AlfalfaGEDB | MS.gene50765

M. sativa cultivar XinJiangDaYe / MS.gene50765

KEGG: -
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50765.t1	XP_003607146.1	95.3	86	3	1	1	86	1	85	3.80E-37	163.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50765.t1	P33080	68.9	90	24	1	1	86	1	90	6.6e-30	131.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50765.t1	G7JMA0	95.3	86	3	1	1	86	1	85	2.7e-37	163.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003576	MS.gene50765	PPI
MS.gene003579	MS.gene50765	PPI
MS.gene003580	MS.gene50765	PPI
MS.gene003581	MS.gene50765	PPI
MS.gene003582	MS.gene50765	PPI
MS.gene003584	MS.gene50765	PPI
MS.gene003585	MS.gene50765	PPI
MS.gene003593	MS.gene50765	PPI
MS.gene003597	MS.gene50765	PPI
MS.gene003598	MS.gene50765	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50765.t1	MTR_4g072740	95.349	86	3	1	1	86	1	85	5.65e-56	167
MS.gene50765.t1	MTR_4g072490	89.535	86	8	1	1	86	1	85	1.86e-53	161
MS.gene50765.t1	MTR_4g072630	86.047	86	12	0	1	86	1	86	7.01e-53	159
MS.gene50765.t1	MTR_4g072465	83.721	86	14	0	1	86	1	86	9.99e-52	156
MS.gene50765.t1	MTR_4g072470	86.047	86	11	1	1	86	1	85	2.03e-50	153
MS.gene50765.t1	MTR_4g072370	81.818	88	14	1	1	86	1	88	1.82e-48	148
MS.gene50765.t1	MTR_4g072580	82.558	86	14	1	1	86	1	85	1.96e-48	148
MS.gene50765.t1	MTR_4g072670	89.535	86	9	0	1	86	1	86	8.03e-48	147
MS.gene50765.t1	MTR_4g072830	82.759	87	13	1	1	85	1	87	1.67e-47	146
MS.gene50765.t1	MTR_4g072330	78.652	89	15	2	1	86	1	88	6.97e-47	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50765.t1	AT4G38840	55.556	99	31	2	1	86	1	99	3.87e-33	110
MS.gene50765.t1	AT4G34800	58.537	82	31	1	1	79	1	82	8.87e-31	104
MS.gene50765.t1	AT5G18080	62.821	78	27	2	9	85	13	89	1.01e-30	103
MS.gene50765.t1	AT2G21210	55.556	81	34	1	8	86	15	95	1.88e-30	103
MS.gene50765.t1	AT5G18060	60.759	79	29	2	9	86	13	90	2.10e-30	103
MS.gene50765.t1	AT5G18050	60.256	78	29	2	9	85	13	89	2.79e-30	102
MS.gene50765.t1	AT5G18020	60.256	78	29	2	9	85	13	89	3.61e-30	102
MS.gene50765.t1	AT4G38825	58.750	80	29	2	8	86	13	89	9.26e-30	101
MS.gene50765.t1	AT2G21210	55.556	81	34	1	8	86	82	162	9.35e-30	103
MS.gene50765.t1	AT2G21200	63.889	72	25	1	15	85	15	86	1.47e-29	100

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Find 16 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTGGACGTTCCAAA+GGG	0.591452	4.1:+30839143	MS.gene50765:CDS
AAGAAAACGTCTTCTCTGCA+AGG	0.585314	4.1:-30839308	None:intergenic
ACAATTCTTGGAATGAGGTT+TGG	0.397053	4.1:-30839229	None:intergenic
ACCAAGTATCATCAGATCAA+GGG	0.600732	4.1:+30839109	MS.gene50765:CDS
AGAATTGTTAAGCCAAGCTG+AGG	0.653696	4.1:+30839244	MS.gene50765:CDS
ATTCAAATTGTTCCTCAGCT+TGG	0.480012	4.1:-30839256	None:intergenic
CAGCTTGGCTTAACAATTCT+TGG	0.200185	4.1:-30839241	None:intergenic
GAATATGATCATCCAACAGG+TGG	0.648722	4.1:+30839275	MS.gene50765:CDS
GCCCTTGATCTGATGATACT+TGG	0.512708	4.1:-30839110	None:intergenic
GCTTAACAATTCTTGGAATG+AGG	0.457370	4.1:-30839234	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAATATGATCATCCAAC+AGG	+	chr4.1:30839272-30839291	MS.gene50765:CDS	30.0%
ACAATTCTTGGAATGAGGTT+TGG	-	chr4.1:30839232-30839251	None:intergenic	35.0%
ACCAAGTATCATCAGATCAA+GGG	+	chr4.1:30839109-30839128	MS.gene50765:CDS	35.0%
ATTCAAATTGTTCCTCAGCT+TGG	-	chr4.1:30839259-30839278	None:intergenic	35.0%
GCTTAACAATTCTTGGAATG+AGG	-	chr4.1:30839237-30839256	None:intergenic	35.0%
TACCAAGTATCATCAGATCA+AGG	+	chr4.1:30839108-30839127	MS.gene50765:CDS	35.0%
AAAAACTGTGGACGTTCCAA+AGG	+	chr4.1:30839142-30839161	MS.gene50765:CDS	40.0%
AAAACTGTGGACGTTCCAAA+GGG	+	chr4.1:30839143-30839162	MS.gene50765:CDS	40.0%
AAGAAAACGTCTTCTCTGCA+AGG	-	chr4.1:30839311-30839330	None:intergenic	40.0%
AGAATTGTTAAGCCAAGCTG+AGG	+	chr4.1:30839244-30839263	MS.gene50765:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	30839095	30839355	30839095	ID=MS.gene50765
chr4.1	mRNA	30839095	30839355	30839095	ID=MS.gene50765.t1;Parent=MS.gene50765
chr4.1	exon	30839095	30839355	30839095	ID=MS.gene50765.t1.exon1;Parent=MS.gene50765.t1
chr4.1	CDS	30839095	30839355	30839095	ID=cds.MS.gene50765.t1;Parent=MS.gene50765.t1

Gene Sequence	>MS.gene50765 ATGGGTTTTCGTTTACCAAGTATCATCAGATCAAGGGCATCATCTTCAAAAACTGTGGACGTTCCAAAGGGATATCTAGCTGTGTATGTAGGAGAGCAAATGAAGCGATTTGTGATTCCTGTATCATACTTGAACCAAACCTCATTCCAAGAATTGTTAAGCCAAGCTGAGGAACAATTTGAATATGATCATCCAACAGGTGGTCTCACTATTCCTTGCAGAGAAGACGTTTTCTTAGAGATCACTTCTCGTTTGAATTGA
Protein sequence	>MS.gene50765.t1 MGFRLPSIIRSRASSSKTVDVPKGYLAVYVGEQMKRFVIPVSYLNQTSFQELLSQAEEQFEYDHPTGGLTIPCREDVFLEITSRLN