AlfalfaGEDB | MS.gene045360

M. sativa cultivar XinJiangDaYe / MS.gene045360

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045360.t1	XP_003601677.1	95.7	92	4	0	1	92	1	92	3.80E-43	183.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045360.t1	P33080	75.0	92	23	0	1	92	1	92	2.5e-35	149.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045360.t1	G7JAR1	95.7	92	4	0	1	92	1	92	2.7e-43	183.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003576	MS.gene045360	PPI
MS.gene003580	MS.gene045360	PPI
MS.gene003582	MS.gene045360	PPI
MS.gene003585	MS.gene045360	PPI
MS.gene003593	MS.gene045360	PPI
MS.gene003597	MS.gene045360	PPI
MS.gene003603	MS.gene045360	PPI
MS.gene003605	MS.gene045360	PPI
MS.gene003606	MS.gene045360	PPI
MS.gene003626	MS.gene045360	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045360.t1	MTR_3g084250	95.652	92	4	1	92	1	92	1.76e-61	182
MS.gene045360.t1	MTR_3g084190	86.957	92	12	1	92	1	92	3.91e-50	153
MS.gene045360.t1	MTR_3g084150	75.000	92	23	1	92	1	92	6.27e-50	152
MS.gene045360.t1	MTR_3g084210	84.783	92	14	1	92	1	92	7.00e-50	152
MS.gene045360.t1	MTR_8g461420	86.667	90	12	1	90	1	90	1.88e-49	151
MS.gene045360.t1	MTR_8g461410	73.913	92	24	1	92	1	92	3.11e-49	150
MS.gene045360.t1	MTR_3g084180	73.913	92	24	1	92	1	92	3.55e-49	150
MS.gene045360.t1	MTR_3g084230	86.667	90	12	1	90	1	90	6.08e-49	150
MS.gene045360.t1	MTR_3g084160	84.783	92	14	1	92	1	92	3.97e-48	148
MS.gene045360.t1	MTR_3g110045	86.667	90	12	3	92	62	151	6.53e-48	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045360.t1	AT4G38840	52.525	99	38	2	1	90	1	99	2.03e-30	103
MS.gene045360.t1	AT2G21200	63.889	72	25	1	19	89	15	86	2.48e-29	100
MS.gene045360.t1	AT2G21210	51.579	95	41	2	1	90	1	95	2.92e-29	100
MS.gene045360.t1	AT5G18080	61.333	75	28	1	17	90	16	90	4.30e-29	100
MS.gene045360.t1	AT3G03840	63.014	73	25	1	21	91	23	95	5.29e-29	100
MS.gene045360.t1	AT5G18020	58.667	75	30	1	17	90	16	90	6.01e-29	99.8
MS.gene045360.t1	AT3G03820	60.526	76	27	1	19	91	21	96	6.14e-29	100
MS.gene045360.t1	AT5G18050	59.459	74	29	1	17	89	16	89	7.27e-29	99.8
MS.gene045360.t1	AT5G18060	66.667	66	21	1	26	90	25	90	9.78e-29	99.4
MS.gene045360.t1	AT2G21210	51.579	95	41	2	1	90	68	162	1.04e-28	101

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Find 23 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGAATTCCTCTTCAGCT+TGG	0.531525	3.4:-78929159	None:intergenic
AAGCAAGTGGAAGTCCCAAA+AGG	0.556539	3.4:+78929046	MS.gene045360:CDS
AATGATGATCGTCTAATACC+AGG	0.609196	3.4:-78929001	None:intergenic
AGACGATCATCATTTACTGC+AGG	0.545214	3.4:+78929010	MS.gene045360:CDS
AGCCAAGCTGAAGAGGAATT+CGG	0.465601	3.4:+78929157	MS.gene045360:CDS
AGTCCCAAAAGGCTATTTGG+CGG	0.628040	3.4:+78929057	MS.gene045360:CDS
ATGTTGGCGAGGAAATGAAG+AGG	0.714833	3.4:+78929083	MS.gene045360:CDS
ATTCGGTTACTGTCATCCAA+TGG	0.545501	3.4:+78929174	MS.gene045360:CDS
ATTGTTGAGCCAAGCTGAAG+AGG	0.511575	3.4:+78929150	MS.gene045360:CDS
CAAACAACTTCCCGCTTGAA+CGG	0.502878	3.4:+78929235	MS.gene045360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAAATCTTCCTTGCA+CGG	-	chr3.4:78929214-78929233	None:intergenic	30.0%
CTCAACAATTCTTGAAACAA+AGG	-	chr3.4:78929139-78929158	None:intergenic	30.0%
AATGATGATCGTCTAATACC+AGG	-	chr3.4:78929004-78929023	None:intergenic	35.0%
AGACGATCATCATTTACTGC+AGG	+	chr3.4:78929010-78929029	MS.gene045360:CDS	40.0%
ATTCGGTTACTGTCATCCAA+TGG	+	chr3.4:78929174-78929193	MS.gene045360:CDS	40.0%
TTCGGTTACTGTCATCCAAT+GGG	+	chr3.4:78929175-78929194	MS.gene045360:CDS	40.0%
AACCGAATTCCTCTTCAGCT+TGG	-	chr3.4:78929162-78929181	None:intergenic	45.0%
AAGCAAGTGGAAGTCCCAAA+AGG	+	chr3.4:78929046-78929065	MS.gene045360:CDS	45.0%
AGCCAAGCTGAAGAGGAATT+CGG	+	chr3.4:78929157-78929176	MS.gene045360:CDS	45.0%
AGTCCCAAAAGGCTATTTGG+CGG	+	chr3.4:78929057-78929076	MS.gene045360:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	78928986	78929264	78928986	ID=MS.gene045360
chr3.4	mRNA	78928986	78929264	78928986	ID=MS.gene045360.t1;Parent=MS.gene045360
chr3.4	exon	78928986	78929264	78928986	ID=MS.gene045360.t1.exon1;Parent=MS.gene045360.t1
chr3.4	CDS	78928986	78929264	78928986	ID=cds.MS.gene045360.t1;Parent=MS.gene045360.t1

Gene Sequence	>MS.gene045360 ATGGGTTTTCGCTTACCTGGTATTAGACGATCATCATTTACTGCAGGTCAGTCATCTAGCAAGCAAGTGGAAGTCCCAAAAGGCTATTTGGCGGTGTATGTTGGCGAGGAAATGAAGAGGTTCTTGATTCCAGTAGCATTCTTGAATGAGCCTTTGTTTCAAGAATTGTTGAGCCAAGCTGAAGAGGAATTCGGTTACTGTCATCCAATGGGTGGTCTTACAATTCCGTGCAAGGAAGATTTGTTTTTACAAACAACTTCCCGCTTGAACGGCCTATAA
Protein sequence	>MS.gene045360.t1 MGFRLPGIRRSSFTAGQSSSKQVEVPKGYLAVYVGEEMKRFLIPVAFLNEPLFQELLSQAEEEFGYCHPMGGLTIPCKEDLFLQTTSRLNGL