AlfalfaGEDB | MS.gene003577

M. sativa cultivar XinJiangDaYe / MS.gene003577

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003577.t1	RHN61450.1	95.7	93	4	0	1	93	1	93	7.70E-44	186

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003577.t1	P33083	79.1	91	18	1	1	91	1	90	1.9e-35	149.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003577.t1	A0A396I775	95.7	93	4	0	1	93	1	93	5.6e-44	186.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene003628	MS.gene003577	PPI
MS.gene003577	MS.gene50664	PPI
MS.gene003577	MS.gene057785	PPI
MS.gene003607	MS.gene003577	PPI
MS.gene003577	MS.gene50670	PPI
MS.gene003585	MS.gene003577	PPI
MS.gene003577	MS.gene70685	PPI
MS.gene003581	MS.gene003577	PPI
MS.gene003577	MS.gene062941	PPI
MS.gene50653	MS.gene003577	PPI
MS.gene057816	MS.gene003577	PPI
MS.gene003603	MS.gene003577	PPI
MS.gene003577	MS.gene50660	PPI
MS.gene003577	MS.gene057799	PPI
MS.gene003577	MS.gene057794	PPI
MS.gene003577	MS.gene003630	PPI
MS.gene057780	MS.gene003577	PPI
MS.gene057788	MS.gene003577	PPI
MS.gene50773	MS.gene003577	PPI
MS.gene50657	MS.gene003577	PPI
MS.gene003577	MS.gene062980	PPI
MS.gene003577	MS.gene23367	PPI
MS.gene50651	MS.gene003577	PPI
MS.gene50685	MS.gene003577	PPI
MS.gene062962	MS.gene003577	PPI
MS.gene50683	MS.gene003577	PPI
MS.gene003577	MS.gene057802	PPI
MS.gene77525	MS.gene003577	PPI
MS.gene057807	MS.gene003577	PPI
MS.gene003577	MS.gene057796	PPI
MS.gene003577	MS.gene50682	PPI
MS.gene062969	MS.gene003577	PPI
MS.gene23369	MS.gene003577	PPI
MS.gene003577	MS.gene003598	PPI
MS.gene003577	MS.gene50690	PPI
MS.gene003626	MS.gene003577	PPI
MS.gene062946	MS.gene003577	PPI
MS.gene062967	MS.gene003577	PPI
MS.gene003577	MS.gene50655	PPI
MS.gene057805	MS.gene003577	PPI
MS.gene003577	MS.gene003613	PPI
MS.gene003577	MS.gene003584	PPI
MS.gene003605	MS.gene003577	PPI
MS.gene003577	MS.gene057791	PPI
MS.gene062944	MS.gene003577	PPI
MS.gene057798	MS.gene003577	PPI
MS.gene062971	MS.gene003577	PPI
MS.gene23373	MS.gene003577	PPI
MS.gene062954	MS.gene003577	PPI
MS.gene062975	MS.gene003577	PPI
MS.gene003577	MS.gene062965	PPI
MS.gene003577	MS.gene50771	PPI
MS.gene50689	MS.gene003577	PPI
MS.gene003577	MS.gene022358	PPI
MS.gene003576	MS.gene003577	PPI
MS.gene50674	MS.gene003577	PPI
MS.gene057782	MS.gene003577	PPI
MS.gene003577	MS.gene062986	PPI
MS.gene003606	MS.gene003577	PPI
MS.gene003577	MS.gene50770	PPI
MS.gene003577	MS.gene062987	PPI
MS.gene003577	MS.gene057811	PPI
MS.gene057806	MS.gene003577	PPI
MS.gene003577	MS.gene062964	PPI
MS.gene50673	MS.gene003577	PPI
MS.gene062970	MS.gene003577	PPI
MS.gene003577	MS.gene50658	PPI
MS.gene003577	MS.gene057777	PPI
MS.gene003577	MS.gene28863	PPI
MS.gene062942	MS.gene003577	PPI
MS.gene003577	MS.gene062945	PPI
MS.gene057779	MS.gene003577	PPI
MS.gene003629	MS.gene003577	PPI
MS.gene003577	MS.gene057804	PPI
MS.gene003597	MS.gene003577	PPI
MS.gene003577	MS.gene50656	PPI
MS.gene062972	MS.gene003577	PPI
MS.gene003577	MS.gene50686	PPI
MS.gene003577	MS.gene70683	PPI
MS.gene003580	MS.gene003577	PPI
MS.gene003577	MS.gene50666	PPI
MS.gene003577	MS.gene062985	PPI
MS.gene003582	MS.gene003577	PPI
MS.gene003577	MS.gene062953	PPI
MS.gene057800	MS.gene003577	PPI
MS.gene003577	MS.gene003622	PPI
MS.gene003577	MS.gene003599	PPI
MS.gene003577	MS.gene23368	PPI
MS.gene50772	MS.gene003577	PPI
MS.gene003577	MS.gene003623	PPI
MS.gene003577	MS.gene057817	PPI
MS.gene057809	MS.gene003577	PPI
MS.gene003577	MS.gene50668	PPI
MS.gene003577	MS.gene70684	PPI
MS.gene062966	MS.gene003577	PPI
MS.gene003577	MS.gene062958	PPI
MS.gene003577	MS.gene003612	PPI
MS.gene057784	MS.gene003577	PPI
MS.gene003577	MS.gene062983	PPI
MS.gene057783	MS.gene003577	PPI
MS.gene062978	MS.gene003577	PPI
MS.gene50688	MS.gene003577	PPI
MS.gene50669	MS.gene003577	PPI
MS.gene003577	MS.gene062940	PPI
MS.gene003577	MS.gene062989	PPI
MS.gene003577	MS.gene003595	PPI
MS.gene003593	MS.gene003577	PPI
MS.gene003577	MS.gene062959	PPI
MS.gene003579	MS.gene003577	PPI
MS.gene50662	MS.gene003577	PPI
MS.gene003610	MS.gene003577	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003577.t1	MTR_4g072880	94.624	93	5	0	1	93	1	93	9.46e-62	182
MS.gene003577.t1	MTR_4g072310	88.172	93	11	0	1	93	1	93	4.94e-59	176
MS.gene003577.t1	MTR_4g072270	88.172	93	11	0	1	93	1	93	3.69e-58	173
MS.gene003577.t1	MTR_4g072230	83.871	93	13	1	1	93	1	91	4.18e-54	163
MS.gene003577.t1	MTR_4g072860	80.645	93	18	0	1	93	1	93	3.58e-53	160
MS.gene003577.t1	MTR_4g072250	79.570	93	18	1	1	93	1	92	1.14e-51	157
MS.gene003577.t1	MTR_3g084170	76.344	93	21	1	1	93	1	92	3.86e-49	150
MS.gene003577.t1	MTR_3g084150	76.344	93	21	1	1	93	1	92	5.20e-49	150
MS.gene003577.t1	MTR_3g084240	75.269	93	22	1	1	93	1	92	3.14e-48	148
MS.gene003577.t1	MTR_4g072500	72.043	93	25	1	1	93	1	92	4.88e-48	148
MS.gene003577.t1	MTR_3g084180	75.269	93	22	1	1	93	1	92	5.21e-48	147
MS.gene003577.t1	MTR_4g072640	74.725	91	22	1	1	91	1	90	2.01e-47	146
MS.gene003577.t1	MTR_8g461410	73.118	93	24	1	1	93	1	92	2.22e-47	146
MS.gene003577.t1	MTR_3g084220	73.118	93	24	1	1	93	1	92	1.08e-46	144
MS.gene003577.t1	MTR_4g072870	71.429	91	26	0	1	91	1	91	1.93e-46	144
MS.gene003577.t1	MTR_4g072480	72.043	93	25	1	1	93	1	92	3.12e-46	143
MS.gene003577.t1	MTR_4g072240	71.429	91	26	0	1	91	1	91	4.03e-46	143
MS.gene003577.t1	MTR_4g050700	69.892	93	28	0	1	93	1	93	6.35e-46	142
MS.gene003577.t1	MTR_2g012410	69.892	93	28	0	1	93	1	93	6.35e-46	142
MS.gene003577.t1	MTR_3g110038	72.043	93	25	1	1	93	1	92	7.76e-46	142
MS.gene003577.t1	MTR_4g072620	70.968	93	26	1	1	93	1	92	1.01e-45	142
MS.gene003577.t1	MTR_4g072530	70.330	91	26	1	1	91	1	90	1.08e-45	142
MS.gene003577.t1	MTR_4g072680	70.968	93	26	1	1	93	1	92	1.69e-45	141
MS.gene003577.t1	MTR_3g110032	69.892	93	28	0	1	93	1	93	2.92e-45	140
MS.gene003577.t1	MTR_4g072460	70.968	93	26	1	1	93	1	92	2.93e-45	140
MS.gene003577.t1	MTR_3g117630	73.333	90	24	0	4	93	3	92	3.89e-45	140
MS.gene003577.t1	MTR_4g072570	69.892	93	27	1	1	93	1	92	4.80e-45	140
MS.gene003577.t1	MTR_4g072730	70.652	92	26	1	1	92	1	91	6.31e-45	140
MS.gene003577.t1	MTR_4g072490	73.626	91	18	1	1	91	1	85	1.32e-44	139
MS.gene003577.t1	MTR_4g072370	71.429	91	23	1	1	91	1	88	1.51e-44	139
MS.gene003577.t1	MTR_4g072220	67.742	93	30	0	1	93	1	93	2.68e-44	138
MS.gene003577.t1	MTR_4g072850	76.596	94	21	1	1	93	1	94	6.01e-44	137
MS.gene003577.t1	MTR_4g072300	68.132	91	29	0	1	91	1	91	9.30e-44	137
MS.gene003577.t1	MTR_3g110042	72.222	90	24	1	1	90	1	89	1.06e-43	137
MS.gene003577.t1	MTR_3g084250	67.742	93	29	1	1	93	1	92	2.44e-43	136
MS.gene003577.t1	MTR_4g072740	72.527	91	19	1	1	91	1	85	2.84e-43	135
MS.gene003577.t1	MTR_3g084260	66.667	93	31	0	1	93	1	93	3.27e-43	135
MS.gene003577.t1	MTR_4g072580	71.429	91	20	1	1	91	1	85	3.37e-43	135
MS.gene003577.t1	MTR_4g072290	69.892	93	14	1	1	93	1	79	5.50e-43	134
MS.gene003577.t1	MTR_4g072830	71.111	90	23	1	1	90	1	87	2.10e-42	133
MS.gene003577.t1	MTR_4g072330	65.934	91	28	1	1	91	1	88	5.71e-42	132
MS.gene003577.t1	MTR_5g008360	74.684	79	20	0	15	93	5	83	1.11e-41	131
MS.gene003577.t1	MTR_4g072260	64.516	93	33	0	1	93	1	93	1.25e-41	132
MS.gene003577.t1	MTR_4g072630	69.231	91	23	1	1	91	1	86	1.75e-41	131
MS.gene003577.t1	MTR_4g072890	65.934	91	31	0	1	91	1	91	1.82e-41	131
MS.gene003577.t1	MTR_4g072660	67.742	93	24	1	1	93	1	87	1.87e-41	131
MS.gene003577.t1	MTR_4g072465	69.231	91	23	1	1	91	1	86	3.99e-41	130
MS.gene003577.t1	MTR_4g072470	68.132	91	23	1	1	91	1	85	9.75e-41	129
MS.gene003577.t1	MTR_4g072540	71.429	91	21	1	1	91	1	86	1.86e-40	128
MS.gene003577.t1	MTR_4g072610	70.330	91	20	1	1	91	1	84	3.18e-40	128
MS.gene003577.t1	MTR_4g072940	71.739	92	25	1	3	93	33	124	1.21e-39	127
MS.gene003577.t1	MTR_4g072600	67.033	91	24	1	1	91	1	85	1.36e-39	126
MS.gene003577.t1	MTR_5g008370	69.474	95	22	2	1	92	1	91	4.25e-39	127
MS.gene003577.t1	MTR_4g072720	82.857	70	12	0	22	91	17	86	8.35e-39	124
MS.gene003577.t1	MTR_3g084210	67.742	93	29	1	1	93	1	92	1.70e-38	124
MS.gene003577.t1	MTR_3g084190	69.892	93	27	1	1	93	1	92	2.17e-38	123
MS.gene003577.t1	MTR_4g072380	68.478	92	22	2	1	91	1	86	3.54e-38	123
MS.gene003577.t1	MTR_4g072820	67.391	92	22	2	1	91	1	85	4.67e-38	122
MS.gene003577.t1	MTR_4g072650	68.132	91	22	2	1	91	1	84	5.15e-38	122
MS.gene003577.t1	MTR_3g084160	67.742	93	29	1	1	93	1	92	8.44e-38	122
MS.gene003577.t1	MTR_8g461420	69.231	91	27	1	1	91	1	90	1.05e-37	122
MS.gene003577.t1	MTR_4g072510	68.132	91	24	1	1	91	1	86	2.24e-37	120
MS.gene003577.t1	MTR_3g110045	69.231	91	27	1	3	93	62	151	2.94e-37	122
MS.gene003577.t1	MTR_3g084230	69.231	91	27	1	1	91	1	90	3.18e-37	120
MS.gene003577.t1	MTR_4g072670	65.934	91	26	1	1	91	1	86	6.42e-37	119
MS.gene003577.t1	MTR_4g072550	73.973	73	19	0	21	93	31	103	1.36e-36	119
MS.gene003577.t1	MTR_4g072590	69.231	91	22	1	1	91	1	85	9.78e-36	116
MS.gene003577.t1	MTR_3g084200	72.603	73	19	1	1	73	1	72	7.98e-35	115
MS.gene003577.t1	MTR_5g008350	67.500	80	20	1	1	80	1	74	3.32e-34	112
MS.gene003577.t1	MTR_4g072560	54.082	98	38	3	1	91	1	98	1.01e-32	109
MS.gene003577.t1	MTR_4g072910	57.447	94	34	1	4	91	7	100	1.77e-32	108
MS.gene003577.t1	MTR_4g072690	62.637	91	28	1	1	91	1	85	2.96e-32	107
MS.gene003577.t1	MTR_4g072450	61.538	91	29	1	1	91	1	85	2.89e-31	105
MS.gene003577.t1	MTR_4g072980	53.684	95	42	2	1	93	1	95	6.79e-31	104
MS.gene003577.t1	MTR_4g072770	71.212	66	19	0	26	91	15	80	6.27e-30	102
MS.gene003577.t1	MTR_4g072750	59.302	86	30	3	1	82	1	85	8.00e-30	102
MS.gene003577.t1	MTR_3g117640	63.768	69	24	1	25	92	33	101	8.07e-29	99.8
MS.gene003577.t1	MTR_4g072280	58.667	75	31	0	1	75	1	75	7.24e-28	96.7
MS.gene003577.t1	MTR_3g110035	59.740	77	30	1	17	93	63	138	2.86e-27	97.1
MS.gene003577.t1	MTR_3g113310	49.425	87	37	2	8	88	18	103	3.41e-27	95.9
MS.gene003577.t1	MTR_3g117610	51.648	91	35	2	8	90	19	108	4.47e-27	95.9
MS.gene003577.t1	MTR_4g072190	55.556	81	33	2	8	88	20	97	4.51e-27	95.5
MS.gene003577.t1	MTR_6g077850	45.455	88	47	1	4	91	13	99	9.08e-27	94.7
MS.gene003577.t1	MTR_8g461400	53.763	93	16	2	1	93	1	66	2.37e-26	92.4
MS.gene003577.t1	MTR_5g021820	51.724	87	37	2	8	90	18	103	1.54e-25	91.7
MS.gene003577.t1	MTR_8g076040	51.765	85	36	2	8	88	19	102	7.33e-25	89.7
MS.gene003577.t1	MTR_4g072930	47.059	85	41	1	11	91	26	110	1.97e-22	84.0
MS.gene003577.t1	MTR_4g072840	48.913	92	14	3	1	91	1	60	4.84e-20	76.3
MS.gene003577.t1	MTR_1g024085	52.857	70	29	2	15	84	29	94	5.62e-18	73.6
MS.gene003577.t1	MTR_4g124750	53.030	66	30	1	25	90	68	132	2.73e-17	72.0
MS.gene003577.t1	MTR_2g043960	54.839	62	27	1	25	86	75	135	6.52e-17	71.2
MS.gene003577.t1	MTR_3g092220	47.222	72	35	2	17	86	24	94	7.37e-17	69.7
MS.gene003577.t1	MTR_1g009150	46.154	78	37	2	16	89	61	137	2.91e-16	69.7
MS.gene003577.t1	MTR_7g118010	53.968	63	26	2	26	86	23	84	4.13e-16	67.8
MS.gene003577.t1	MTR_4g005310	50.000	70	31	2	16	84	55	121	4.48e-16	68.9
MS.gene003577.t1	MTR_1g061570	43.529	85	44	2	8	92	4	84	4.99e-16	68.2
MS.gene003577.t1	MTR_1g094750	45.455	77	37	2	11	83	31	106	1.14e-15	67.0
MS.gene003577.t1	MTR_4g025830	47.059	68	32	2	26	90	79	145	2.32e-15	67.0
MS.gene003577.t1	MTR_1g063950	46.377	69	36	1	15	83	37	104	4.02e-15	65.5
MS.gene003577.t1	MTR_0388s0020	43.243	74	38	2	20	90	69	141	7.42e-15	65.5
MS.gene003577.t1	MTR_4g072160	50.000	68	33	1	23	90	34	100	1.38e-14	64.7
MS.gene003577.t1	MTR_8g026730	50.820	61	27	2	26	84	27	86	1.40e-14	63.9
MS.gene003577.t1	MTR_3g109160	49.254	67	33	1	26	92	69	134	2.44e-14	64.7
MS.gene003577.t1	MTR_4g005320	49.180	61	30	1	26	86	70	129	3.53e-14	64.3
MS.gene003577.t1	MTR_8g461210	40.964	83	47	2	4	86	14	94	6.93e-14	62.4
MS.gene003577.t1	MTR_7g101740	46.875	64	33	1	25	88	39	101	1.77e-13	61.2
MS.gene003577.t1	MTR_3g098970	35.802	81	50	2	13	93	41	119	2.58e-13	61.6
MS.gene003577.t1	MTR_1g059770	41.270	63	36	1	26	88	49	110	3.92e-13	60.8
MS.gene003577.t1	MTR_3g105900	65.854	41	14	0	25	65	1171	1211	1.22e-12	62.4
MS.gene003577.t1	MTR_7g405740	37.931	87	47	3	5	91	52	131	3.54e-12	58.9
MS.gene003577.t1	MTR_7g104940	41.667	60	34	1	29	88	53	111	1.13e-11	57.0
MS.gene003577.t1	MTR_2g095430	45.588	68	30	3	17	78	34	100	1.40e-11	56.6
MS.gene003577.t1	MTR_8g101520	35.632	87	51	2	9	91	29	114	2.87e-11	56.6
MS.gene003577.t1	MTR_7g104950	34.722	72	46	1	17	88	41	111	8.78e-11	54.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003577.t1	AT4G38840	64.706	85	29	1	8	91	15	99	8.87e-34	112
MS.gene003577.t1	AT5G18020	65.789	76	25	1	17	91	15	90	1.26e-32	109
MS.gene003577.t1	AT5G18060	65.789	76	25	1	17	91	15	90	2.36e-32	108
MS.gene003577.t1	AT2G21200	70.423	71	20	1	21	90	16	86	2.50e-32	108
MS.gene003577.t1	AT5G18080	65.789	76	25	1	17	91	15	90	4.03e-32	107
MS.gene003577.t1	AT5G18050	63.158	76	27	1	17	91	15	90	2.04e-31	106
MS.gene003577.t1	AT3G03840	60.465	86	29	2	9	92	13	95	2.63e-31	105
MS.gene003577.t1	AT4G38825	66.667	72	23	1	21	91	18	89	3.87e-31	105
MS.gene003577.t1	AT5G18030	66.216	74	24	1	19	91	15	88	4.63e-31	105
MS.gene003577.t1	AT3G03820	56.383	94	35	2	2	92	6	96	9.63e-31	104
MS.gene003577.t1	AT4G38850	59.770	87	22	2	8	91	13	89	2.26e-30	103
MS.gene003577.t1	AT5G18010	61.842	76	28	1	17	91	15	90	2.96e-30	103
MS.gene003577.t1	AT3G03850	70.588	68	18	1	27	92	26	93	4.83e-30	102
MS.gene003577.t1	AT4G34770	61.842	76	27	1	19	92	28	103	3.64e-29	100
MS.gene003577.t1	AT2G21210	60.811	74	27	1	20	91	22	95	4.46e-29	100
MS.gene003577.t1	AT2G21210	60.811	74	27	1	20	91	89	162	2.53e-28	100
MS.gene003577.t1	AT3G03830	56.818	88	31	2	11	91	5	92	4.87e-28	97.4
MS.gene003577.t1	AT4G34810	57.500	80	28	3	17	90	38	117	1.39e-27	97.4
MS.gene003577.t1	AT4G13790	54.118	85	31	3	8	90	13	91	3.38e-27	95.5
MS.gene003577.t1	AT4G38860	51.136	88	39	1	8	91	18	105	3.83e-27	95.9
MS.gene003577.t1	AT4G34800	52.326	86	33	2	1	83	1	81	6.68e-27	94.7
MS.gene003577.t1	AT4G34760	50.575	87	36	2	8	88	19	104	4.84e-26	93.2
MS.gene003577.t1	AT2G21220	61.538	65	24	1	24	88	38	101	1.43e-25	91.7
MS.gene003577.t1	AT1G75580	48.352	91	38	2	8	90	18	107	1.79e-25	91.7
MS.gene003577.t1	AT4G34790	61.194	67	23	2	26	89	39	105	1.01e-23	87.0
MS.gene003577.t1	AT1G19830	48.454	97	36	3	8	91	18	113	1.80e-23	86.7
MS.gene003577.t1	AT4G36110	48.193	83	40	2	8	88	20	101	9.55e-23	84.7
MS.gene003577.t1	AT2G16580	47.727	88	38	2	8	88	19	105	1.61e-22	84.0
MS.gene003577.t1	AT4G34780	44.681	94	46	2	4	91	3	96	2.90e-22	83.6
MS.gene003577.t1	AT2G18010	56.250	64	27	1	25	88	47	109	9.38e-21	79.7
MS.gene003577.t1	AT5G66260	45.349	86	44	2	8	91	14	98	1.06e-19	76.6
MS.gene003577.t1	AT3G20220	49.315	73	35	2	15	86	36	107	5.28e-19	75.5
MS.gene003577.t1	AT3G43120	55.000	60	26	1	25	84	78	136	3.83e-17	71.6
MS.gene003577.t1	AT5G20810	51.471	68	32	1	25	92	78	144	7.92e-17	71.2
MS.gene003577.t1	AT2G46690	44.048	84	42	3	13	92	10	92	1.11e-16	69.7
MS.gene003577.t1	AT3G51200	51.562	64	29	2	21	83	34	96	1.34e-16	68.9
MS.gene003577.t1	AT1G75590	43.529	85	43	2	4	84	16	99	1.82e-16	70.1
MS.gene003577.t1	AT5G20810	53.030	66	30	1	25	90	78	142	1.85e-16	70.9
MS.gene003577.t1	AT4G34750	48.438	64	32	1	25	88	36	98	3.96e-16	68.9
MS.gene003577.t1	AT4G34750	48.438	64	32	1	25	88	36	98	3.96e-16	68.9
MS.gene003577.t1	AT5G10990	50.000	60	29	1	25	84	40	98	1.21e-15	67.8
MS.gene003577.t1	AT3G61900	45.714	70	34	2	25	91	29	97	1.65e-15	67.0
MS.gene003577.t1	AT1G19840	50.000	68	31	2	19	84	32	98	2.46e-15	67.0
MS.gene003577.t1	AT2G45210	42.466	73	38	2	21	90	74	145	6.44e-15	66.2
MS.gene003577.t1	AT4G31320	49.231	65	32	1	26	90	80	143	1.42e-14	65.9
MS.gene003577.t1	AT4G00880	53.968	63	26	2	26	86	28	89	3.11e-14	63.5
MS.gene003577.t1	AT2G24400	50.000	66	32	1	26	91	64	128	4.28e-14	64.3
MS.gene003577.t1	AT3G60690	43.478	69	35	2	26	91	88	155	9.79e-14	63.2
MS.gene003577.t1	AT2G37030	49.153	59	29	1	25	83	48	105	3.14e-13	60.8
MS.gene003577.t1	AT4G09530	40.244	82	39	4	17	91	22	100	6.34e-13	59.7
MS.gene003577.t1	AT5G53590	34.409	93	55	2	1	88	21	112	2.01e-12	59.3
MS.gene003577.t1	AT4G12410	46.875	64	30	2	26	86	76	138	2.44e-12	59.3
MS.gene003577.t1	AT3G09870	43.243	74	39	2	15	86	34	106	3.82e-12	57.8
MS.gene003577.t1	AT2G36210	39.130	69	42	0	16	84	44	112	4.26e-12	58.2
MS.gene003577.t1	AT3G12830	36.000	75	47	1	17	91	41	114	8.68e-12	57.4
MS.gene003577.t1	AT4G22620	42.647	68	35	2	22	86	75	141	1.73e-11	57.0
MS.gene003577.t1	AT3G03847	36.471	85	51	2	3	86	48	130	1.78e-11	56.6
MS.gene003577.t1	AT1G56150	37.037	81	49	2	7	86	18	97	3.88e-11	55.1

Find 25 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCAGCAAGTCTTGAAATGA+AGG	0.414635	4.1:-30693212	None:intergenic
GGTTGGTTCAAGTATGATAC+AGG	0.420400	4.1:-30693191	None:intergenic
TTATAACATCTCACATGAAC+GGG	0.438316	4.1:+30693312	MS.gene003577:CDS
GTTCGGATATGATCATCCTA+TGG	0.453892	4.1:+30693250	MS.gene003577:CDS
GGATATCTTGCAGTATATGT+TGG	0.514243	4.1:+30693143	MS.gene003577:CDS
AGTCAAGCTGAGGAAGAGTT+CGG	0.527489	4.1:+30693233	MS.gene003577:CDS
GTTTCCCTGGTATCATCAGA+AGG	0.529309	4.1:+30693069	MS.gene003577:CDS
TATAAGTTGAAAGATATCTT+CGG	0.533520	4.1:-30693294	None:intergenic
GCAAGTCTTGAAATGAAGGT+TGG	0.540897	4.1:-30693208	None:intergenic
GATATCTTCGGTGCAAGGAA+TGG	0.544258	4.1:-30693282	None:intergenic
TATACTGCAAGATATCCCTT+TGG	0.554191	4.1:-30693137	None:intergenic
TGAAAGATATCTTCGGTGCA+AGG	0.570557	4.1:-30693287	None:intergenic
GATGCCCTTCTGATGATACC+AGG	0.570722	4.1:-30693074	None:intergenic
AAAAGCTGTTGATGTGCCAA+AGG	0.571530	4.1:+30693121	MS.gene003577:CDS
CTTCGGTGCAAGGAATGGTA+AGG	0.572529	4.1:-30693277	None:intergenic
CTTATAACATCTCACATGAA+CGG	0.579345	4.1:+30693311	MS.gene003577:CDS
AAAGCTGTTGATGTGCCAAA+GGG	0.580562	4.1:+30693122	MS.gene003577:CDS
TTCGGATATGATCATCCTAT+GGG	0.588379	4.1:+30693251	MS.gene003577:CDS
TTTCCCTGGTATCATCAGAA+GGG	0.622803	4.1:+30693070	MS.gene003577:CDS
AGACTTGCTGAGTCAAGCTG+AGG	0.645081	4.1:+30693223	MS.gene003577:CDS
GGATATGATCATCCTATGGG+TGG	0.645829	4.1:+30693254	MS.gene003577:CDS
GGAATGGTAAGGCCACCCAT+AGG	0.649958	4.1:-30693266	None:intergenic
ATGCCCTTCTGATGATACCA+GGG	0.658200	4.1:-30693073	None:intergenic
GTTGGTTCAAGTATGATACA+GGG	0.701547	4.1:-30693190	None:intergenic
ATGTTGGAGAGAAACAGACG+CGG	0.843088	4.1:+30693159	MS.gene003577:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATAAGTTGAAAGATATCTT+CGG	-	chr4.1:30693297-30693316	None:intergenic	20.0%
	CTTATAACATCTCACATGAA+CGG	+	chr4.1:30693311-30693330	MS.gene003577:CDS	30.0%
	TTATAACATCTCACATGAAC+GGG	+	chr4.1:30693312-30693331	MS.gene003577:CDS	30.0%
	GGATATCTTGCAGTATATGT+TGG	+	chr4.1:30693143-30693162	MS.gene003577:CDS	35.0%
	TATACTGCAAGATATCCCTT+TGG	-	chr4.1:30693140-30693159	None:intergenic	35.0%
	TTCGGATATGATCATCCTAT+GGG	+	chr4.1:30693251-30693270	MS.gene003577:CDS	35.0%
!	GTTGGTTCAAGTATGATACA+GGG	-	chr4.1:30693193-30693212	None:intergenic	35.0%
	AAAAGCTGTTGATGTGCCAA+AGG	+	chr4.1:30693121-30693140	MS.gene003577:CDS	40.0%
	AAAGCTGTTGATGTGCCAAA+GGG	+	chr4.1:30693122-30693141	MS.gene003577:CDS	40.0%
	CTCAGCAAGTCTTGAAATGA+AGG	-	chr4.1:30693215-30693234	None:intergenic	40.0%
	GCAAGTCTTGAAATGAAGGT+TGG	-	chr4.1:30693211-30693230	None:intergenic	40.0%
	GTTCGGATATGATCATCCTA+TGG	+	chr4.1:30693250-30693269	MS.gene003577:CDS	40.0%
	TTTCCCTGGTATCATCAGAA+GGG	+	chr4.1:30693070-30693089	MS.gene003577:CDS	40.0%
!	GGTTGGTTCAAGTATGATAC+AGG	-	chr4.1:30693194-30693213	None:intergenic	40.0%
!	TGAAAGATATCTTCGGTGCA+AGG	-	chr4.1:30693290-30693309	None:intergenic	40.0%
!!!	ATCAGAAGGGCATCTTTTTC+TGG	+	chr4.1:30693083-30693102	MS.gene003577:CDS	40.0%
!!!	CAACAGCTTTTGAAGCTGAT+CGG	-	chr4.1:30693112-30693131	None:intergenic	40.0%
	AGTCAAGCTGAGGAAGAGTT+CGG	+	chr4.1:30693233-30693252	MS.gene003577:CDS	45.0%
	ATGCCCTTCTGATGATACCA+GGG	-	chr4.1:30693076-30693095	None:intergenic	45.0%
	ATGTTGGAGAGAAACAGACG+CGG	+	chr4.1:30693159-30693178	MS.gene003577:CDS	45.0%
	GGATATGATCATCCTATGGG+TGG	+	chr4.1:30693254-30693273	MS.gene003577:CDS	45.0%
	GTTTCCCTGGTATCATCAGA+AGG	+	chr4.1:30693069-30693088	MS.gene003577:CDS	45.0%
!	GATATCTTCGGTGCAAGGAA+TGG	-	chr4.1:30693285-30693304	None:intergenic	45.0%
	GATGCCCTTCTGATGATACC+AGG	-	chr4.1:30693077-30693096	None:intergenic	50.0%
!	CTTCGGTGCAAGGAATGGTA+AGG	-	chr4.1:30693280-30693299	None:intergenic	50.0%
!!	AGACTTGCTGAGTCAAGCTG+AGG	+	chr4.1:30693223-30693242	MS.gene003577:CDS	50.0%
	GGAATGGTAAGGCCACCCAT+AGG	-	chr4.1:30693269-30693288	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	30693059	30693340	30693059	ID=MS.gene003577
chr4.1	mRNA	30693059	30693340	30693059	ID=MS.gene003577.t1;Parent=MS.gene003577
chr4.1	exon	30693059	30693340	30693059	ID=MS.gene003577.t1.exon1;Parent=MS.gene003577.t1
chr4.1	CDS	30693059	30693340	30693059	ID=cds.MS.gene003577.t1;Parent=MS.gene003577.t1

Gene Sequence	>MS.gene003577 ATGGGTTTTCGTTTCCCTGGTATCATCAGAAGGGCATCTTTTTCTGGAAACCGATCAGCTTCAAAAGCTGTTGATGTGCCAAAGGGATATCTTGCAGTATATGTTGGAGAGAAACAGACGCGGTATGTGATCCCTGTATCATACTTGAACCAACCTTCATTTCAAGACTTGCTGAGTCAAGCTGAGGAAGAGTTCGGATATGATCATCCTATGGGTGGCCTTACCATTCCTTGCACCGAAGATATCTTTCAACTTATAACATCTCACATGAACGGGCTATGA
Protein sequence	>MS.gene003577.t1 MGFRFPGIIRRASFSGNRSASKAVDVPKGYLAVYVGEKQTRYVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCTEDIFQLITSHMNGL