AlfalfaGEDB | MS.gene062979

M. sativa cultivar XinJiangDaYe / MS.gene062979

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062979.t1	XP_003607146.1	91.8	85	7	0	1	85	1	85	6.40E-37	162.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062979.t1	P33079	69.2	91	22	1	1	85	1	91	2.0e-31	136.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062979.t1	G7JMA0	91.8	85	7	0	1	85	1	85	4.6e-37	162.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003576	MS.gene062979	PPI
MS.gene003580	MS.gene062979	PPI
MS.gene003582	MS.gene062979	PPI
MS.gene003593	MS.gene062979	PPI
MS.gene003605	MS.gene062979	PPI
MS.gene003626	MS.gene062979	PPI
MS.gene057805	MS.gene062979	PPI
MS.gene057807	MS.gene062979	PPI
MS.gene057809	MS.gene062979	PPI
MS.gene057816	MS.gene062979	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062979.t1	MTR_4g072740	91.765	85	7	0	1	85	1	85	1.67e-54	163
MS.gene062979.t1	MTR_4g072490	87.059	85	11	0	1	85	1	85	5.41e-53	160
MS.gene062979.t1	MTR_4g072580	89.412	85	9	0	1	85	1	85	6.21e-53	159
MS.gene062979.t1	MTR_4g072600	87.059	85	11	0	1	85	1	85	7.53e-51	154
MS.gene062979.t1	MTR_4g072470	87.059	85	11	0	1	85	1	85	1.88e-50	153
MS.gene062979.t1	MTR_4g072370	85.227	88	10	1	1	85	1	88	1.90e-49	151
MS.gene062979.t1	MTR_4g072830	86.207	87	9	1	1	84	1	87	6.30e-49	149
MS.gene062979.t1	MTR_4g072330	81.818	88	13	1	1	85	1	88	6.95e-49	149
MS.gene062979.t1	MTR_4g072465	81.395	86	15	1	1	85	1	86	2.05e-47	145
MS.gene062979.t1	MTR_4g072630	80.233	86	16	1	1	85	1	86	4.56e-47	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062979.t1	AT4G38840	70.588	68	19	1	19	85	32	99	4.38e-33	110
MS.gene062979.t1	AT5G18050	60.256	78	30	1	9	85	13	90	1.47e-31	106
MS.gene062979.t1	AT5G18060	61.538	78	29	1	9	85	13	90	3.77e-31	105
MS.gene062979.t1	AT5G18020	62.162	74	27	1	13	85	17	90	1.11e-30	103
MS.gene062979.t1	AT2G21200	60.526	76	29	1	10	84	11	86	1.37e-30	103
MS.gene062979.t1	AT5G18080	59.494	79	30	2	8	85	13	90	1.53e-30	103
MS.gene062979.t1	AT5G18030	58.537	82	33	1	5	85	7	88	3.19e-30	102
MS.gene062979.t1	AT4G38825	61.111	72	27	1	15	85	18	89	5.03e-30	102
MS.gene062979.t1	AT4G34800	62.195	82	27	2	1	78	1	82	7.38e-30	102
MS.gene062979.t1	AT4G38850	59.259	81	26	2	8	85	13	89	1.03e-29	101

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Find 20 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGTGGACGTGCCAA+AGG	0.525848	4.2:+35432060	MS.gene062979:CDS
AAAGTTGTGGACGTGCCAAA+GGG	0.566864	4.2:+35432061	MS.gene062979:CDS
AAGAAAACGTCTTCTCTGCA+AGG	0.585314	4.2:-35432226	None:intergenic
ACAATTCTTGGAATGATGGT+TGG	0.495577	4.2:-35432147	None:intergenic
AGAATTGTTAAGCCAAGCTG+AGG	0.653696	4.2:+35432162	MS.gene062979:CDS
ATGTTGGAGAAGAAATGAAA+CGG	0.571742	4.2:+35432098	MS.gene062979:CDS
ATTCAAATTGTTCCTCAGCT+TGG	0.480012	4.2:-35432174	None:intergenic
ATTTGAATATGATCATCCAA+CGG	0.606980	4.2:+35432189	MS.gene062979:CDS
CAGCTTGGCTTAACAATTCT+TGG	0.200185	4.2:-35432159	None:intergenic
CTTAACAATTCTTGGAATGA+TGG	0.439859	4.2:-35432151	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTGGAGAAGAAATGAAA+CGG	+	chr4.2:35432098-35432117	MS.gene062979:CDS	30.0%
CTTAACAATTCTTGGAATGA+TGG	-	chr4.2:35432154-35432173	None:intergenic	30.0%
TTTGAATATGATCATCCAAC+GGG	+	chr4.2:35432190-35432209	MS.gene062979:CDS	30.0%
ACAATTCTTGGAATGATGGT+TGG	-	chr4.2:35432150-35432169	None:intergenic	35.0%
ATTCAAATTGTTCCTCAGCT+TGG	-	chr4.2:35432177-35432196	None:intergenic	35.0%
GGATATCTTGCAGTATATGT+TGG	+	chr4.2:35432082-35432101	MS.gene062979:CDS	35.0%
TATACTGCAAGATATCCCTT+TGG	-	chr4.2:35432079-35432098	None:intergenic	35.0%
AAGAAAACGTCTTCTCTGCA+AGG	-	chr4.2:35432229-35432248	None:intergenic	40.0%
AGAATTGTTAAGCCAAGCTG+AGG	+	chr4.2:35432162-35432181	MS.gene062979:CDS	40.0%
CAGCTTGGCTTAACAATTCT+TGG	-	chr4.2:35432162-35432181	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35432016	35432273	35432016	ID=MS.gene062979
chr4.2	mRNA	35432016	35432273	35432016	ID=MS.gene062979.t1;Parent=MS.gene062979
chr4.2	exon	35432016	35432273	35432016	ID=MS.gene062979.t1.exon1;Parent=MS.gene062979.t1
chr4.2	CDS	35432016	35432273	35432016	ID=cds.MS.gene062979.t1;Parent=MS.gene062979.t1

Gene Sequence	>MS.gene062979 ATGGGTTTTCGTTTACCTGGTATCATCAGAAGGACATCGTCTTCAAAAGTTGTGGACGTGCCAAAGGGATATCTTGCAGTATATGTTGGAGAAGAAATGAAACGGTTTGTGATCCCTATATCATACTTGAACCAACCATCATTCCAAGAATTGTTAAGCCAAGCTGAGGAACAATTTGAATATGATCATCCAACGGGTGGTCTCACTATTCCTTGCAGAGAAGACGTTTTCTTAGAGATCACTTCTCGTTTGAATTGA
Protein sequence	>MS.gene062979.t1 MGFRLPGIIRRTSSSKVVDVPKGYLAVYVGEEMKRFVIPISYLNQPSFQELLSQAEEQFEYDHPTGGLTIPCREDVFLEITSRLN