AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003587

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003587.t1 MTR_4g072370 90.000 90 9 0 79 168 1 90 1.89e-55 169
MS.gene003587.t1 MTR_4g072330 85.556 90 13 0 79 168 1 90 3.87e-53 164
MS.gene003587.t1 MTR_4g072830 90.805 87 8 0 79 165 1 87 1.26e-52 162
MS.gene003587.t1 MTR_4g072580 85.556 90 10 1 79 168 1 87 9.24e-50 155
MS.gene003587.t1 MTR_4g072740 84.091 88 11 1 79 166 1 85 5.32e-48 150
MS.gene003587.t1 MTR_4g072600 83.333 90 12 1 79 168 1 87 3.83e-47 149
MS.gene003587.t1 MTR_4g072490 78.409 88 16 1 79 166 1 85 2.52e-44 141
MS.gene003587.t1 MTR_4g072630 77.273 88 18 1 79 166 1 86 6.44e-44 140
MS.gene003587.t1 MTR_4g072470 80.682 88 14 1 79 166 1 85 6.60e-44 140
MS.gene003587.t1 MTR_3g084150 73.333 90 22 1 79 166 1 90 3.84e-43 139
MS.gene003587.t1 MTR_4g072870 71.429 91 23 1 79 166 1 91 7.18e-43 138
MS.gene003587.t1 MTR_4g072880 71.429 91 23 1 79 166 1 91 1.55e-42 137
MS.gene003587.t1 MTR_4g072310 72.527 91 22 1 79 166 1 91 2.25e-42 137
MS.gene003587.t1 MTR_4g072610 74.444 90 19 1 79 168 1 86 2.62e-42 136
MS.gene003587.t1 MTR_3g084180 72.222 90 23 1 79 166 1 90 3.38e-42 136
MS.gene003587.t1 MTR_4g072240 69.231 91 25 1 79 166 1 91 3.90e-42 136
MS.gene003587.t1 MTR_3g110032 72.527 91 22 1 79 166 1 91 4.62e-42 136
MS.gene003587.t1 MTR_4g072650 76.667 90 17 2 79 168 1 86 6.48e-42 135
MS.gene003587.t1 MTR_8g461410 71.111 90 24 1 79 166 1 90 1.13e-41 135
MS.gene003587.t1 MTR_4g072220 70.330 91 24 1 79 166 1 91 2.35e-41 134
MS.gene003587.t1 MTR_3g110038 73.333 90 22 1 79 166 1 90 3.42e-41 134
MS.gene003587.t1 MTR_4g072300 68.132 91 26 1 79 166 1 91 4.46e-41 133
MS.gene003587.t1 MTR_4g072540 77.273 88 18 1 79 166 1 86 4.53e-41 133
MS.gene003587.t1 MTR_4g072465 76.471 85 18 1 79 163 1 83 5.52e-41 133
MS.gene003587.t1 MTR_3g084170 73.333 90 22 1 79 166 1 90 1.05e-40 132
MS.gene003587.t1 MTR_4g072670 78.409 88 17 1 79 166 1 86 1.16e-40 132
MS.gene003587.t1 MTR_4g072820 78.409 88 14 3 79 165 1 84 1.74e-40 132
MS.gene003587.t1 MTR_4g072260 68.132 91 26 1 79 166 1 91 2.02e-40 132
MS.gene003587.t1 MTR_4g072230 75.281 89 17 2 79 164 1 87 3.92e-40 131
MS.gene003587.t1 MTR_3g084250 70.000 90 25 1 79 166 1 90 7.28e-40 130
MS.gene003587.t1 MTR_4g072890 67.033 91 27 1 79 166 1 91 8.32e-40 130
MS.gene003587.t1 MTR_3g084240 72.222 90 23 1 79 166 1 90 1.31e-39 129
MS.gene003587.t1 MTR_4g072270 70.455 88 23 1 79 163 1 88 1.83e-39 129
MS.gene003587.t1 MTR_4g072250 73.626 91 20 2 79 166 1 90 2.01e-39 129
MS.gene003587.t1 MTR_4g050700 72.727 88 21 1 79 163 1 88 2.02e-39 129
MS.gene003587.t1 MTR_2g012410 72.727 88 21 1 79 163 1 88 2.02e-39 129
MS.gene003587.t1 MTR_4g072510 75.000 88 20 1 79 166 1 86 2.58e-39 129
MS.gene003587.t1 MTR_4g072570 70.000 90 25 1 79 166 1 90 1.02e-38 127
MS.gene003587.t1 MTR_4g072860 72.527 91 22 1 79 166 1 91 1.15e-38 127
MS.gene003587.t1 MTR_3g084220 70.000 90 25 1 79 166 1 90 1.50e-38 127
MS.gene003587.t1 MTR_4g072380 75.581 86 17 2 79 163 1 83 5.00e-38 125
MS.gene003587.t1 MTR_4g072500 70.330 91 23 2 79 166 1 90 7.20e-38 125
MS.gene003587.t1 MTR_3g110042 70.787 89 24 1 79 165 1 89 1.23e-37 125
MS.gene003587.t1 MTR_4g072720 72.727 88 22 1 79 166 1 86 1.61e-37 124
MS.gene003587.t1 MTR_5g008350 77.922 77 14 1 79 155 1 74 2.70e-37 123
MS.gene003587.t1 MTR_3g084260 68.132 91 26 1 79 166 1 91 2.87e-37 124
MS.gene003587.t1 MTR_4g072730 66.667 90 28 1 79 166 1 90 3.95e-37 123
MS.gene003587.t1 MTR_4g072640 70.330 91 23 2 79 166 1 90 4.08e-37 123
MS.gene003587.t1 MTR_4g072530 68.132 91 25 2 79 166 1 90 1.07e-36 122
MS.gene003587.t1 MTR_4g072480 65.556 90 29 1 79 166 1 90 1.24e-36 122
MS.gene003587.t1 MTR_3g117630 72.289 83 20 1 87 166 8 90 1.42e-36 122
MS.gene003587.t1 MTR_4g072590 72.727 88 21 1 79 166 1 85 2.15e-36 121
MS.gene003587.t1 MTR_4g072690 72.727 88 21 1 79 166 1 85 5.37e-36 120
MS.gene003587.t1 MTR_4g072680 64.444 90 30 1 79 166 1 90 5.53e-36 120
MS.gene003587.t1 MTR_4g072850 69.565 92 24 1 79 166 1 92 1.45e-35 119
MS.gene003587.t1 MTR_4g072660 67.059 85 25 1 79 163 1 82 1.52e-35 119
MS.gene003587.t1 MTR_4g072620 63.333 90 31 1 79 166 1 90 2.00e-35 119
MS.gene003587.t1 MTR_8g461420 66.667 90 28 1 79 166 1 90 2.63e-35 119
MS.gene003587.t1 MTR_3g084190 65.556 90 29 1 79 166 1 90 3.17e-35 118
MS.gene003587.t1 MTR_4g072450 71.591 88 22 1 79 166 1 85 1.40e-34 117
MS.gene003587.t1 MTR_3g084230 65.556 90 29 1 79 166 1 90 1.51e-34 117
MS.gene003587.t1 MTR_3g084210 64.444 90 30 1 79 166 1 90 1.85e-34 116
MS.gene003587.t1 MTR_4g072460 62.222 90 32 1 79 166 1 90 2.09e-34 116
MS.gene003587.t1 MTR_3g110045 67.045 88 27 1 81 166 62 149 1.86e-33 116
MS.gene003587.t1 MTR_3g084160 65.934 91 27 2 79 166 1 90 2.73e-33 114
MS.gene003587.t1 MTR_4g072940 65.000 100 30 2 71 166 24 122 7.83e-33 113
MS.gene003587.t1 MTR_5g008360 65.432 81 28 0 86 166 1 81 1.80e-32 111
MS.gene003587.t1 MTR_5g008370 64.444 90 30 1 79 166 1 90 1.37e-31 110
MS.gene003587.t1 MTR_3g084200 70.833 72 19 1 79 148 1 72 4.46e-30 105
MS.gene003587.t1 MTR_4g072560 51.000 100 37 3 79 167 1 99 1.91e-29 104
MS.gene003587.t1 MTR_4g072770 61.798 89 24 2 79 166 1 80 4.97e-29 102
MS.gene003587.t1 MTR_4g072550 60.241 83 32 1 85 166 19 101 5.39e-29 103
MS.gene003587.t1 MTR_3g117640 50.000 102 39 2 79 168 1 102 1.54e-28 102
MS.gene003587.t1 MTR_4g072980 52.174 92 39 2 79 165 1 92 2.58e-28 101
MS.gene003587.t1 MTR_4g072750 65.714 70 24 0 78 147 4 73 6.35e-27 97.4
MS.gene003587.t1 MTR_4g072910 64.384 73 25 1 94 166 29 100 6.53e-27 97.8
MS.gene003587.t1 MTR_4g072280 62.667 75 25 1 79 150 1 75 1.52e-26 96.3
MS.gene003587.t1 MTR_4g072290 57.143 91 22 2 79 166 1 77 9.98e-26 94.4
MS.gene003587.t1 MTR_3g110035 56.250 80 30 1 87 166 62 136 6.29e-24 91.3
MS.gene003587.t1 MTR_6g077850 58.209 67 28 0 100 166 33 99 1.54e-22 86.7
MS.gene003587.t1 MTR_3g113310 56.716 67 28 1 99 165 40 105 1.25e-21 84.3
MS.gene003587.t1 MTR_3g117610 60.000 65 25 1 99 163 43 106 3.53e-21 83.6
MS.gene003587.t1 MTR_4g072190 50.000 84 40 2 83 165 17 99 4.23e-21 82.8
MS.gene003587.t1 MTR_4g072930 48.780 82 37 2 91 167 30 111 3.27e-19 78.6
MS.gene003587.t1 MTR_8g461400 50.000 90 17 2 79 166 1 64 4.94e-19 76.6
MS.gene003587.t1 MTR_1g094750 56.452 62 26 1 100 161 49 109 2.56e-18 76.3
MS.gene003587.t1 MTR_4g072840 51.136 88 13 3 79 165 1 59 3.57e-18 74.3
MS.gene003587.t1 MTR_5g021820 47.436 78 40 1 88 165 27 103 4.21e-17 72.8
MS.gene003587.t1 MTR_8g076040 45.882 85 38 2 86 163 19 102 9.15e-17 72.0
MS.gene003587.t1 MTR_8g461210 57.627 59 24 1 100 158 34 91 2.07e-16 71.2
MS.gene003587.t1 MTR_2g043960 36.842 114 54 3 62 158 20 132 2.61e-16 72.4
MS.gene003587.t1 MTR_4g005310 39.604 101 54 2 68 161 23 123 1.79e-15 69.7
MS.gene003587.t1 MTR_7g101740 53.125 64 29 1 100 163 39 101 2.52e-15 68.6
MS.gene003587.t1 MTR_1g063950 45.714 70 37 1 92 161 39 107 2.64e-15 68.6
MS.gene003587.t1 MTR_1g061570 54.839 62 27 1 100 161 18 78 4.19e-15 68.2
MS.gene003587.t1 MTR_4g124750 54.237 59 26 1 100 158 68 125 1.15e-14 67.8
MS.gene003587.t1 MTR_1g024085 45.122 82 39 2 82 158 13 93 1.56e-14 67.4
MS.gene003587.t1 MTR_4g025830 41.250 80 43 2 90 166 68 146 2.49e-14 67.0
MS.gene003587.t1 MTR_4g072160 44.706 85 44 2 78 161 14 96 2.77e-14 66.2
MS.gene003587.t1 MTR_1g009150 47.297 74 38 1 88 161 58 130 3.45e-14 67.0
MS.gene003587.t1 MTR_3g092220 39.744 78 44 2 92 167 24 100 5.51e-14 65.1
MS.gene003587.t1 MTR_7g118010 47.692 65 31 2 101 163 23 86 1.68e-13 63.5
MS.gene003587.t1 MTR_2g066830 43.284 67 37 1 101 167 58 123 8.91e-13 62.4
MS.gene003587.t1 MTR_0388s0020 42.105 76 40 2 94 166 68 142 9.15e-13 62.8
MS.gene003587.t1 MTR_4g005320 49.180 61 30 1 101 161 70 129 3.58e-12 61.6
MS.gene003587.t1 MTR_3g109160 52.459 61 28 1 101 161 69 128 8.21e-12 60.5
MS.gene003587.t1 MTR_8g026730 41.176 68 37 2 101 166 27 93 1.02e-11 58.9
MS.gene003587.t1 MTR_7g405740 38.824 85 48 2 77 161 46 126 1.84e-11 59.3
MS.gene003587.t1 MTR_8g096470 45.000 60 32 1 102 161 47 105 2.79e-11 57.8
MS.gene003587.t1 MTR_7g101890 38.571 70 40 2 87 154 38 106 4.43e-11 57.8
MS.gene003587.t1 MTR_3g105900 72.973 37 10 0 99 135 1170 1206 8.65e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003587.t1 AT4G38840 69.118 68 20 1 100 166 32 99 6.58e-31 108
MS.gene003587.t1 AT5G18080 55.696 79 34 1 88 165 11 89 7.90e-29 102
MS.gene003587.t1 AT2G21210 50.505 99 42 2 75 166 64 162 8.96e-29 104
MS.gene003587.t1 AT5G18020 58.025 81 29 2 86 165 13 89 1.22e-28 102
MS.gene003587.t1 AT2G21210 60.811 74 27 1 95 166 22 95 3.21e-28 101
MS.gene003587.t1 AT5G18060 56.790 81 30 2 86 165 13 89 8.17e-28 99.8
MS.gene003587.t1 AT2G21200 61.111 72 27 1 95 165 15 86 1.07e-27 99.4
MS.gene003587.t1 AT5G18050 55.556 81 31 2 86 165 13 89 1.16e-27 99.4
MS.gene003587.t1 AT4G34810 68.571 70 17 2 101 165 48 117 1.29e-27 100
MS.gene003587.t1 AT4G34800 56.977 86 32 2 79 161 1 84 2.13e-27 99.0
MS.gene003587.t1 AT4G38825 58.108 74 30 1 93 165 15 88 2.57e-27 98.6
MS.gene003587.t1 AT5G18010 53.165 79 36 1 88 165 11 89 4.08e-27 98.2
MS.gene003587.t1 AT5G18030 55.556 81 29 2 86 165 13 87 5.17e-27 97.8
MS.gene003587.t1 AT4G34770 62.963 81 28 1 88 166 22 102 2.30e-26 96.7
MS.gene003587.t1 AT3G03840 59.155 71 27 1 97 165 23 93 1.12e-25 94.7
MS.gene003587.t1 AT4G38850 53.012 83 29 2 86 165 13 88 2.37e-25 93.6
MS.gene003587.t1 AT3G03820 50.562 89 41 1 80 165 6 94 2.90e-24 90.9
MS.gene003587.t1 AT4G13790 44.330 97 40 3 71 165 7 91 5.19e-24 90.1
MS.gene003587.t1 AT4G34780 61.972 71 24 1 99 166 26 96 3.15e-23 88.6
MS.gene003587.t1 AT3G03850 62.121 66 23 1 102 165 26 91 3.70e-23 88.2
MS.gene003587.t1 AT4G34790 61.538 65 23 1 101 163 39 103 1.02e-21 84.7
MS.gene003587.t1 AT3G03830 56.522 69 27 1 100 165 23 91 1.31e-21 84.0
MS.gene003587.t1 AT4G38860 56.716 67 29 0 99 165 38 104 2.23e-21 84.0
MS.gene003587.t1 AT2G21220 46.667 90 40 2 83 165 15 103 3.70e-20 80.9
MS.gene003587.t1 AT1G75580 58.209 67 27 1 99 165 42 107 8.20e-20 80.1
MS.gene003587.t1 AT4G34760 45.652 92 40 2 83 165 16 106 1.06e-19 79.7
MS.gene003587.t1 AT2G37030 57.143 63 26 1 100 162 48 109 4.67e-18 75.9
MS.gene003587.t1 AT1G19830 57.353 68 27 2 99 165 46 112 4.45e-17 73.2
MS.gene003587.t1 AT2G16580 44.318 88 38 2 86 163 19 105 1.02e-16 72.0
MS.gene003587.t1 AT3G43120 51.515 66 31 1 93 158 71 135 1.17e-16 73.2
MS.gene003587.t1 AT4G36110 46.512 86 40 2 83 163 17 101 1.54e-16 71.2
MS.gene003587.t1 AT3G20220 50.725 69 32 2 101 168 47 114 6.06e-16 70.1
MS.gene003587.t1 AT3G12830 46.341 82 39 2 86 167 39 115 1.52e-15 69.7
MS.gene003587.t1 AT2G18010 48.611 72 36 1 92 163 39 109 3.10e-15 68.2
MS.gene003587.t1 AT3G53250 45.946 74 34 2 89 162 42 109 4.02e-15 68.2
MS.gene003587.t1 AT5G20810 55.932 59 25 1 100 158 78 135 4.04e-15 69.3
MS.gene003587.t1 AT3G53250 45.946 74 34 2 89 162 73 140 4.55e-15 68.9
MS.gene003587.t1 AT5G20810 55.932 59 25 1 100 158 78 135 7.45e-15 69.3
MS.gene003587.t1 AT1G75590 46.429 84 37 3 82 158 16 98 1.91e-14 67.4
MS.gene003587.t1 AT4G34750 44.928 69 37 1 100 168 36 103 2.02e-14 67.0
MS.gene003587.t1 AT4G34750 44.928 69 37 1 100 168 36 103 2.02e-14 67.0
MS.gene003587.t1 AT5G66260 42.391 92 47 2 80 166 8 98 2.05e-14 65.9
MS.gene003587.t1 AT1G19840 45.783 83 38 2 82 158 16 97 6.09e-14 65.9
MS.gene003587.t1 AT3G51200 50.794 63 29 2 100 161 38 99 8.92e-14 64.3
MS.gene003587.t1 AT5G10990 42.169 83 41 2 82 158 16 97 2.37e-13 64.3
MS.gene003587.t1 AT1G56150 47.761 67 34 1 101 167 38 103 2.58e-13 63.2
MS.gene003587.t1 AT1G16510 47.761 67 34 1 101 167 54 119 3.26e-13 63.9
MS.gene003587.t1 AT5G03310 50.000 68 27 3 100 161 38 104 3.07e-12 60.5
MS.gene003587.t1 AT3G09870 48.485 66 31 2 91 154 35 99 4.25e-12 60.1
MS.gene003587.t1 AT3G61900 48.387 62 28 2 100 158 29 89 1.01e-11 59.7
MS.gene003587.t1 AT2G46690 43.478 69 35 2 93 158 16 83 2.52e-11 58.2
MS.gene003587.t1 AT1G79130 40.000 80 42 2 86 165 38 111 3.53e-11 58.2
MS.gene003587.t1 AT4G12410 40.964 83 44 3 87 166 63 143 3.58e-11 58.5
MS.gene003587.t1 AT4G31320 49.180 61 30 1 101 161 80 139 4.74e-11 58.9
MS.gene003587.t1 AT3G60690 42.647 68 35 2 101 165 88 154 5.73e-11 58.5
MS.gene003587.t1 AT2G24400 50.820 61 29 1 101 161 64 123 9.24e-11 58.2

Find 35 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCTCCCTTAGGTTCTA+TGG 0.235851 4.1:-30738496 MS.gene003587:intron
TGAATATATATACAGATTAA+TGG 0.291714 4.1:+30738418 None:intergenic
GTTTACCTGGTATCATTAGA+AGG 0.305364 4.1:-30738255 MS.gene003587:CDS
TCACCAAGACATACAAGAAT+GGG 0.446593 4.1:-30738283 MS.gene003587:CDS
TTCACCAAGACATACAAGAA+TGG 0.474153 4.1:-30738284 MS.gene003587:CDS
TCTTGGTGAAAAGAAGATAT+TGG 0.474861 4.1:+30738297 None:intergenic
GATCAGTGACGGAGGGCCAT+TGG 0.491019 4.1:+30738470 None:intergenic
GCAATTCTTGAAAGGATGGT+TGG 0.491633 4.1:+30738125 None:intergenic
AAACCCATTCTTGTATGTCT+TGG 0.497300 4.1:+30738280 None:intergenic
TTGATTCAGCAATTCTTGAA+AGG 0.502538 4.1:+30738117 None:intergenic
TTCGGATATGATCATCCAAC+GGG 0.502747 4.1:-30738082 MS.gene003587:CDS
TTCAGCAATTCTTGAAAGGA+TGG 0.503691 4.1:+30738121 None:intergenic
TAATAATGTTGATGTCCAGC+TGG 0.503762 4.1:-30738746 None:intergenic
AATCAAGCTGAGGAACAATT+CGG 0.516745 4.1:-30738100 MS.gene003587:CDS
TCAAACCAAGCATCTTCAAA+AGG 0.524792 4.1:-30738229 MS.gene003587:CDS
GGATACCTTGCAGTATATGT+TGG 0.528219 4.1:-30738190 MS.gene003587:CDS
AAAAGGCGTGGATGTGCCAA+AGG 0.538107 4.1:-30738212 MS.gene003587:CDS
TTTACCTGGTATCATTAGAA+GGG 0.541489 4.1:-30738254 MS.gene003587:CDS
TATACTGCAAGGTATCCCTT+TGG 0.555072 4.1:+30738196 None:intergenic
TTAGGTTCTATGGATGCCAA+TGG 0.568136 4.1:-30738486 MS.gene003587:intron
CCAAGCATCTTCAAAAGGCG+TGG 0.581649 4.1:-30738224 MS.gene003587:CDS
ATGGATATGTAACAAGTAGT+CGG 0.594511 4.1:+30738437 None:intergenic
AAGAACACGTCTTCTCTACA+AGG 0.596846 4.1:+30738046 None:intergenic
CCTTGCAGTATATGTTGGAG+AGG 0.605007 4.1:-30738185 MS.gene003587:CDS
AAAGGCGTGGATGTGCCAAA+GGG 0.605891 4.1:-30738211 MS.gene003587:CDS
GAGGCCCTTCTAATGATACC+AGG 0.605897 4.1:+30738250 None:intergenic
CCTCTCCAACATATACTGCA+AGG 0.627279 4.1:+30738185 None:intergenic
GCAACTTGAAAGATCAGTGA+CGG 0.640973 4.1:+30738459 None:intergenic
ATTCGGATATGATCATCCAA+CGG 0.644339 4.1:-30738083 MS.gene003587:CDS
GGAATTGTTAGACCACCCGT+TGG 0.644367 4.1:+30738067 None:intergenic
AGAATTGCTGAATCAAGCTG+AGG 0.644376 4.1:-30738110 MS.gene003587:CDS
ATGTTGGAGAGGAAATGAAG+CGG 0.662900 4.1:-30738174 MS.gene003587:CDS
CTTGAAAGATCAGTGACGGA+GGG 0.666191 4.1:+30738463 None:intergenic
GGATATGATCATCCAACGGG+TGG 0.676726 4.1:-30738079 MS.gene003587:CDS
ACTTGAAAGATCAGTGACGG+AGG 0.680261 4.1:+30738462 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATATATATACAGATTAA+TGG + chr4.1:30738341-30738360 None:intergenic 15.0%
!! ATAATCACAAACATATAGAA+TGG + chr4.1:30738095-30738114 None:intergenic 20.0%
AGAGCATATAATAGATCACA+TGG + chr4.1:30738242-30738261 None:intergenic 30.0%
ATGGATATGTAACAAGTAGT+CGG + chr4.1:30738322-30738341 None:intergenic 30.0%
TCTTGGTGAAAAGAAGATAT+TGG + chr4.1:30738462-30738481 None:intergenic 30.0%
TTGATTCAGCAATTCTTGAA+AGG + chr4.1:30738642-30738661 None:intergenic 30.0%
TTTACCTGGTATCATTAGAA+GGG - chr4.1:30738502-30738521 MS.gene003587:intron 30.0%
!!! CTTCACATAGTTTTAGACAT+CGG - chr4.1:30738047-30738066 MS.gene003587:CDS 30.0%
AAACCCATTCTTGTATGTCT+TGG + chr4.1:30738479-30738498 None:intergenic 35.0%
AATCAAGCTGAGGAACAATT+CGG - chr4.1:30738656-30738675 MS.gene003587:intron 35.0%
ATTCGGATATGATCATCCAA+CGG - chr4.1:30738673-30738692 MS.gene003587:intron 35.0%
GTTTACCTGGTATCATTAGA+AGG - chr4.1:30738501-30738520 MS.gene003587:intron 35.0%
TCAAACCAAGCATCTTCAAA+AGG - chr4.1:30738527-30738546 MS.gene003587:intron 35.0%
TCACCAAGACATACAAGAAT+GGG - chr4.1:30738473-30738492 MS.gene003587:CDS 35.0%
TTCACCAAGACATACAAGAA+TGG - chr4.1:30738472-30738491 MS.gene003587:CDS 35.0%
TTCAGCAATTCTTGAAAGGA+TGG + chr4.1:30738638-30738657 None:intergenic 35.0%
! TATTTTCTGTCCTCTACGTA+AGG - chr4.1:30738147-30738166 MS.gene003587:CDS 35.0%
!! CGTTGTGAATGATTTTGAGT+TGG + chr4.1:30738383-30738402 None:intergenic 35.0%
!! TACGTCTGTTTTATTGCAAG+TGG - chr4.1:30738114-30738133 MS.gene003587:CDS 35.0%
!! TTTTGAAGATGCTTGGTTTG+AGG + chr4.1:30738528-30738547 None:intergenic 35.0%
AAGAACACGTCTTCTCTACA+AGG + chr4.1:30738713-30738732 None:intergenic 40.0%
AGAATTGCTGAATCAAGCTG+AGG - chr4.1:30738646-30738665 MS.gene003587:intron 40.0%
ATGTTGGAGAGGAAATGAAG+CGG - chr4.1:30738582-30738601 MS.gene003587:intron 40.0%
ATTGGCATCCATAGAACCTA+AGG + chr4.1:30738271-30738290 None:intergenic 40.0%
GCAACTTGAAAGATCAGTGA+CGG + chr4.1:30738300-30738319 None:intergenic 40.0%
GCAATTCTTGAAAGGATGGT+TGG + chr4.1:30738634-30738653 None:intergenic 40.0%
GGATACCTTGCAGTATATGT+TGG - chr4.1:30738566-30738585 MS.gene003587:intron 40.0%
GTAGATAATGACTTACCAGC+TGG + chr4.1:30738028-30738047 None:intergenic 40.0%
TATATGCTCTTGTCTCCCTT+AGG - chr4.1:30738252-30738271 MS.gene003587:CDS 40.0%
TTAGGTTCTATGGATGCCAA+TGG - chr4.1:30738270-30738289 MS.gene003587:CDS 40.0%
TTCGGATATGATCATCCAAC+GGG - chr4.1:30738674-30738693 MS.gene003587:intron 40.0%
TTGGCATCCATAGAACCTAA+GGG + chr4.1:30738270-30738289 None:intergenic 40.0%
! TATACTGCAAGGTATCCCTT+TGG + chr4.1:30738563-30738582 None:intergenic 40.0%
!! AGAATGGGTTTTCGTTTACC+TGG - chr4.1:30738488-30738507 MS.gene003587:intron 40.0%
ACTTGAAAGATCAGTGACGG+AGG + chr4.1:30738297-30738316 None:intergenic 45.0%
CCTCTCCAACATATACTGCA+AGG + chr4.1:30738574-30738593 None:intergenic 45.0%
CCTTGCAGTATATGTTGGAG+AGG - chr4.1:30738571-30738590 MS.gene003587:intron 45.0%
CTTGTCTCCCTTAGGTTCTA+TGG - chr4.1:30738260-30738279 MS.gene003587:CDS 45.0%
TTTCTGTCCTCTACGTAAGG+AGG - chr4.1:30738150-30738169 MS.gene003587:CDS 45.0%
! CTTGAAAGATCAGTGACGGA+GGG + chr4.1:30738296-30738315 None:intergenic 45.0%
CCAAGCATCTTCAAAAGGCG+TGG - chr4.1:30738532-30738551 MS.gene003587:intron 50.0%
GAGGCCCTTCTAATGATACC+AGG + chr4.1:30738509-30738528 None:intergenic 50.0%
GGAATTGTTAGACCACCCGT+TGG + chr4.1:30738692-30738711 None:intergenic 50.0%
GGATATGATCATCCAACGGG+TGG - chr4.1:30738677-30738696 MS.gene003587:intron 50.0%
TGTCCTCTACGTAAGGAGGT+GGG - chr4.1:30738154-30738173 MS.gene003587:CDS 50.0%
! AAAAGGCGTGGATGTGCCAA+AGG - chr4.1:30738544-30738563 MS.gene003587:intron 50.0%
! AAAGGCGTGGATGTGCCAAA+GGG - chr4.1:30738545-30738564 MS.gene003587:intron 50.0%
!! CCACGCCTTTTGAAGATGCT+TGG + chr4.1:30738535-30738554 None:intergenic 50.0%
CTGTCCTCTACGTAAGGAGG+TGG - chr4.1:30738153-30738172 MS.gene003587:CDS 55.0%
TGTCCCACCTCCTTACGTAG+AGG + chr4.1:30738160-30738179 None:intergenic 55.0%
! GATCAGTGACGGAGGGCCAT+TGG + chr4.1:30738289-30738308 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 30738015 30738763 30738015 ID=MS.gene003587
chr4.1 mRNA 30738015 30738763 30738015 ID=MS.gene003587.t1;Parent=MS.gene003587
chr4.1 exon 30738747 30738763 30738747 ID=MS.gene003587.t1.exon1;Parent=MS.gene003587.t1
chr4.1 CDS 30738747 30738763 30738747 ID=cds.MS.gene003587.t1;Parent=MS.gene003587.t1
chr4.1 exon 30738015 30738504 30738015 ID=MS.gene003587.t1.exon2;Parent=MS.gene003587.t1
chr4.1 CDS 30738015 30738504 30738015 ID=cds.MS.gene003587.t1;Parent=MS.gene003587.t1
Gene Sequence

>MS.gene003587

ATGTTGATGTCCAGCTGGTAAGTCATTATCTACTTCACATAGTTTTAGACATCGGATAAATAGAAATCATACATACACCATTCTATATGTTTGTGATTATACGTCTGTTTTATTGCAAGTGGTTCAATTATATATTTTCTGTCCTCTACGTAAGGAGGTGGGACATGCATTAACTATTTTTATGACATTTGATGTAGAAAATTGAGAAATCATCTAAGACAACACCATGTGATCTATTATATGCTCTTGTCTCCCTTAGGTTCTATGGATGCCAATGGCCCTCCGTCACTGATCTTTCAAGTTGCCGACTACTTGTTACATATCCATTAATCTGTATATATATTCATGACTGCAAGCATTTAGAACCAACTCAAAATCATTCACAACGCAAAGCTTTTGAGATTCAGAAACATTCTTCTTATACGCAAGTCTTTCATTTTTACACCAATATCTTCTTTTCACCAAGACATACAAGAATGGGTTTTCGTTTACCTGGTATCATTAGAAGGGCCTCAAACCAAGCATCTTCAAAAGGCGTGGATGTGCCAAAGGGATACCTTGCAGTATATGTTGGAGAGGAAATGAAGCGGTTTGTGATATCAATTTCTTTGTTGAACCAACCATCCTTTCAAGAATTGCTGAATCAAGCTGAGGAACAATTCGGATATGATCATCCAACGGGTGGTCTAACAATTCCTTGTAGAGAAGACGTGTTCTTAGATATTACTTCTCGTTTGAGTCTGTGCTAA
Protein sequence

>MS.gene003587.t1

MLMSSWFYGCQWPSVTDLSSCRLLVTYPLICIYIHDCKHLEPTQNHSQRKAFEIQKHSSYTQVFHFYTNIFFSPRHTRMGFRLPGIIRRASNQASSKGVDVPKGYLAVYVGEEMKRFVISISLLNQPSFQELLNQAEEQFGYDHPTGGLTIPCREDVFLDITSRLSLC