AlfalfaGEDB | MS.gene003590

M. sativa cultivar XinJiangDaYe / MS.gene003590

KEGG: -
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003590.t1	XP_003607146.1	95.3	86	3	1	1	86	1	85	3.80E-37	163.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003590.t1	P33080	68.9	90	24	1	1	86	1	90	6.6e-30	131.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003590.t1	G7JMA0	95.3	86	3	1	1	86	1	85	2.7e-37	163.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003590	MS.gene23368	PPI
MS.gene003590	MS.gene062987	PPI
MS.gene003590	MS.gene50670	PPI
MS.gene003590	MS.gene057817	PPI
MS.gene003590	MS.gene70684	PPI
MS.gene003590	MS.gene062964	PPI
MS.gene003590	MS.gene062958	PPI
MS.gene003590	MS.gene057798	PPI
MS.gene003590	MS.gene003612	PPI
MS.gene003590	MS.gene062983	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003590.t1	MTR_4g072740	95.349	86	3	1	1	86	1	85	5.65e-56	167
MS.gene003590.t1	MTR_4g072490	89.535	86	8	1	1	86	1	85	1.86e-53	161
MS.gene003590.t1	MTR_4g072630	86.047	86	12	0	1	86	1	86	7.01e-53	159
MS.gene003590.t1	MTR_4g072465	83.721	86	14	0	1	86	1	86	9.99e-52	156
MS.gene003590.t1	MTR_4g072470	86.047	86	11	1	1	86	1	85	2.03e-50	153
MS.gene003590.t1	MTR_4g072370	81.818	88	14	1	1	86	1	88	1.82e-48	148
MS.gene003590.t1	MTR_4g072580	82.558	86	14	1	1	86	1	85	1.96e-48	148
MS.gene003590.t1	MTR_4g072670	89.535	86	9	0	1	86	1	86	8.03e-48	147
MS.gene003590.t1	MTR_4g072830	82.759	87	13	1	1	85	1	87	1.67e-47	146
MS.gene003590.t1	MTR_4g072330	78.652	89	15	2	1	86	1	88	6.97e-47	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003590.t1	AT4G38840	55.556	99	31	2	1	86	1	99	3.87e-33	110
MS.gene003590.t1	AT4G34800	58.537	82	31	1	1	79	1	82	8.87e-31	104
MS.gene003590.t1	AT5G18080	62.821	78	27	2	9	85	13	89	1.01e-30	103
MS.gene003590.t1	AT2G21210	55.556	81	34	1	8	86	15	95	1.88e-30	103
MS.gene003590.t1	AT5G18060	60.759	79	29	2	9	86	13	90	2.10e-30	103
MS.gene003590.t1	AT5G18050	60.256	78	29	2	9	85	13	89	2.79e-30	102
MS.gene003590.t1	AT5G18020	60.256	78	29	2	9	85	13	89	3.61e-30	102
MS.gene003590.t1	AT4G38825	58.750	80	29	2	8	86	13	89	9.26e-30	101
MS.gene003590.t1	AT2G21210	55.556	81	34	1	8	86	82	162	9.35e-30	103
MS.gene003590.t1	AT2G21200	63.889	72	25	1	15	85	15	86	1.47e-29	100

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Find 16 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTGGACGTTCCAAA+GGG	0.591452	4.1:+30773726	MS.gene003590:CDS
AAGAAAACGTCTTCTCTGCA+AGG	0.585314	4.1:-30773891	None:intergenic
ACAATTCTTGGAATGAGGTT+TGG	0.397053	4.1:-30773812	None:intergenic
ACCAAGTATCATCAGATCAA+GGG	0.600732	4.1:+30773692	MS.gene003590:CDS
AGAATTGTTAAGCCAAGCTG+AGG	0.653696	4.1:+30773827	MS.gene003590:CDS
ATTCAAATTGTTCCTCAGCT+TGG	0.480012	4.1:-30773839	None:intergenic
CAGCTTGGCTTAACAATTCT+TGG	0.200185	4.1:-30773824	None:intergenic
GAATATGATCATCCAACAGG+TGG	0.648722	4.1:+30773858	MS.gene003590:CDS
GCCCTTGATCTGATGATACT+TGG	0.512708	4.1:-30773693	None:intergenic
GCTTAACAATTCTTGGAATG+AGG	0.457370	4.1:-30773817	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAATATGATCATCCAAC+AGG	+	chr4.1:30773855-30773874	MS.gene003590:CDS	30.0%
ACAATTCTTGGAATGAGGTT+TGG	-	chr4.1:30773815-30773834	None:intergenic	35.0%
ACCAAGTATCATCAGATCAA+GGG	+	chr4.1:30773692-30773711	MS.gene003590:CDS	35.0%
ATTCAAATTGTTCCTCAGCT+TGG	-	chr4.1:30773842-30773861	None:intergenic	35.0%
GCTTAACAATTCTTGGAATG+AGG	-	chr4.1:30773820-30773839	None:intergenic	35.0%
TACCAAGTATCATCAGATCA+AGG	+	chr4.1:30773691-30773710	MS.gene003590:CDS	35.0%
AAAAACTGTGGACGTTCCAA+AGG	+	chr4.1:30773725-30773744	MS.gene003590:CDS	40.0%
AAAACTGTGGACGTTCCAAA+GGG	+	chr4.1:30773726-30773745	MS.gene003590:CDS	40.0%
AAGAAAACGTCTTCTCTGCA+AGG	-	chr4.1:30773894-30773913	None:intergenic	40.0%
AGAATTGTTAAGCCAAGCTG+AGG	+	chr4.1:30773827-30773846	MS.gene003590:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	30773678	30773938	30773678	ID=MS.gene003590
chr4.1	mRNA	30773678	30773938	30773678	ID=MS.gene003590.t1;Parent=MS.gene003590
chr4.1	exon	30773678	30773938	30773678	ID=MS.gene003590.t1.exon1;Parent=MS.gene003590.t1
chr4.1	CDS	30773678	30773938	30773678	ID=cds.MS.gene003590.t1;Parent=MS.gene003590.t1

Gene Sequence	>MS.gene003590 ATGGGTTTTCGTTTACCAAGTATCATCAGATCAAGGGCATCATCTTCAAAAACTGTGGACGTTCCAAAGGGATATCTAGCTGTGTATGTAGGAGAGCAAATGAAGCGATTTGTGATTCCTGTATCATACTTGAACCAAACCTCATTCCAAGAATTGTTAAGCCAAGCTGAGGAACAATTTGAATATGATCATCCAACAGGTGGTCTCACTATTCCTTGCAGAGAAGACGTTTTCTTAGAGATCACTTCTCGTTTGAATTGA
Protein sequence	>MS.gene003590.t1 MGFRLPSIIRSRASSSKTVDVPKGYLAVYVGEQMKRFVIPVSYLNQTSFQELLSQAEEQFEYDHPTGGLTIPCREDVFLEITSRLN