AlfalfaGEDB | MS.gene062988

M. sativa cultivar XinJiangDaYe / MS.gene062988

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062988.t1	RHN61450.1	95.7	93	4	0	1	93	1	93	1.00E-43	185.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062988.t1	P33083	76.9	91	20	1	1	91	1	90	1.1e-33	143.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062988.t1	A0A396I775	95.7	93	4	0	1	93	1	93	7.3e-44	185.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene062988	MS.gene003613	PPI
MS.gene003580	MS.gene062988	PPI
MS.gene062988	MS.gene057799	PPI
MS.gene003582	MS.gene062988	PPI
MS.gene062988	MS.gene003630	PPI
MS.gene057800	MS.gene062988	PPI
MS.gene062988	MS.gene057779	PPI
MS.gene062988	MS.gene062965	PPI
MS.gene062988	MS.gene50771	PPI
MS.gene50772	MS.gene062988	PPI
MS.gene057809	MS.gene062988	PPI
MS.gene062988	MS.gene022358	PPI
MS.gene062988	MS.gene057802	PPI
MS.gene062966	MS.gene062988	PPI
MS.gene062988	MS.gene057796	PPI
MS.gene062988	MS.gene23369	PPI
MS.gene057783	MS.gene062988	PPI
MS.gene062978	MS.gene062988	PPI
MS.gene062988	MS.gene062986	PPI
MS.gene062988	MS.gene50770	PPI
MS.gene062988	MS.gene057811	PPI
MS.gene003593	MS.gene062988	PPI
MS.gene062988	MS.gene062944	PPI
MS.gene062988	MS.gene50658	PPI
MS.gene062988	MS.gene50651	PPI
MS.gene50662	MS.gene062988	PPI
MS.gene062988	MS.gene50655	PPI
MS.gene062988	MS.gene28863	PPI
MS.gene062988	MS.gene003584	PPI
MS.gene003628	MS.gene062988	PPI
MS.gene062988	MS.gene057791	PPI
MS.gene062988	MS.gene057804	PPI
MS.gene003585	MS.gene062988	PPI
MS.gene062988	MS.gene50666	PPI
MS.gene057816	MS.gene062988	PPI
MS.gene003603	MS.gene062988	PPI
MS.gene062988	MS.gene062985	PPI
MS.gene062988	MS.gene057784	PPI
MS.gene062988	MS.gene062953	PPI
MS.gene062988	MS.gene23368	PPI
MS.gene062988	MS.gene062987	PPI
MS.gene50657	MS.gene062988	PPI
MS.gene062988	MS.gene057817	PPI
MS.gene062988	MS.gene70684	PPI
MS.gene062988	MS.gene062964	PPI
MS.gene062962	MS.gene062988	PPI
MS.gene062988	MS.gene062958	PPI
MS.gene062988	MS.gene057798	PPI
MS.gene062988	MS.gene003612	PPI
MS.gene062988	MS.gene057777	PPI
MS.gene50683	MS.gene062988	PPI
MS.gene062988	MS.gene062945	PPI
MS.gene77525	MS.gene062988	PPI
MS.gene057807	MS.gene062988	PPI
MS.gene062988	MS.gene062967	PPI
MS.gene062988	MS.gene003579	PPI
MS.gene062969	MS.gene062988	PPI
MS.gene062988	MS.gene062989	PPI
MS.gene062988	MS.gene003595	PPI
MS.gene062988	MS.gene003607	PPI
MS.gene062988	MS.gene50656	PPI
MS.gene062988	MS.gene50686	PPI
MS.gene003626	MS.gene062988	PPI
MS.gene062988	MS.gene057785	PPI
MS.gene062988	MS.gene70683	PPI
MS.gene062988	MS.gene50670	PPI
MS.gene062946	MS.gene062988	PPI
MS.gene057805	MS.gene062988	PPI
MS.gene062988	MS.gene50669	PPI
MS.gene003605	MS.gene062988	PPI
MS.gene062988	MS.gene70685	PPI
MS.gene062988	MS.gene003622	PPI
MS.gene062971	MS.gene062988	PPI
MS.gene23373	MS.gene062988	PPI
MS.gene062988	MS.gene003599	PPI
MS.gene062954	MS.gene062988	PPI
MS.gene062988	MS.gene50660	PPI
MS.gene062988	MS.gene003623	PPI
MS.gene062988	MS.gene50668	PPI
MS.gene062988	MS.gene003581	PPI
MS.gene062975	MS.gene062988	PPI
MS.gene062988	MS.gene057794	PPI
MS.gene062988	MS.gene50688	PPI
MS.gene062988	MS.gene003629	PPI
MS.gene062988	MS.gene062983	PPI
MS.gene50689	MS.gene062988	PPI
MS.gene003576	MS.gene062988	PPI
MS.gene50674	MS.gene062988	PPI
MS.gene062988	MS.gene062980	PPI
MS.gene062988	MS.gene23367	PPI
MS.gene062988	MS.gene062940	PPI
MS.gene062988	MS.gene003610	PPI
MS.gene057782	MS.gene062988	PPI
MS.gene003606	MS.gene062988	PPI
MS.gene062988	MS.gene062959	PPI
MS.gene057806	MS.gene062988	PPI
MS.gene062988	MS.gene50664	PPI
MS.gene062988	MS.gene50773	PPI
MS.gene50673	MS.gene062988	PPI
MS.gene062988	MS.gene50682	PPI
MS.gene062970	MS.gene062988	PPI
MS.gene062988	MS.gene50653	PPI
MS.gene062942	MS.gene062988	PPI
MS.gene062988	MS.gene003598	PPI
MS.gene062988	MS.gene50690	PPI
MS.gene003597	MS.gene062988	PPI
MS.gene062988	MS.gene062941	PPI
MS.gene062988	MS.gene057780	PPI
MS.gene062988	MS.gene057788	PPI
MS.gene062972	MS.gene062988	PPI
MS.gene062988	MS.gene50685	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062988.t1	MTR_4g072880	94.624	93	5	0	1	93	1	93	8.11e-62	182
MS.gene062988.t1	MTR_4g072310	88.172	93	11	0	1	93	1	93	2.82e-59	176
MS.gene062988.t1	MTR_4g072270	89.247	93	10	0	1	93	1	93	1.02e-58	175
MS.gene062988.t1	MTR_4g072230	82.796	93	14	1	1	93	1	91	4.48e-53	160
MS.gene062988.t1	MTR_4g072860	79.570	93	19	0	1	93	1	93	1.20e-52	159
MS.gene062988.t1	MTR_4g072250	78.495	93	19	1	1	93	1	92	1.62e-50	154
MS.gene062988.t1	MTR_3g084150	74.194	93	23	1	1	93	1	92	1.28e-47	147
MS.gene062988.t1	MTR_3g084180	73.118	93	24	1	1	93	1	92	7.17e-47	145
MS.gene062988.t1	MTR_4g072500	69.892	93	27	1	1	93	1	92	3.02e-46	143
MS.gene062988.t1	MTR_3g084170	73.118	93	24	1	1	93	1	92	3.56e-46	143
MS.gene062988.t1	MTR_3g110038	72.043	93	25	1	1	93	1	92	5.34e-46	142
MS.gene062988.t1	MTR_8g461410	70.968	93	26	1	1	93	1	92	5.71e-46	142
MS.gene062988.t1	MTR_4g072240	71.429	91	26	0	1	91	1	91	9.69e-46	142
MS.gene062988.t1	MTR_4g072640	72.527	91	24	1	1	91	1	90	1.05e-45	142
MS.gene062988.t1	MTR_3g084240	72.043	93	25	1	1	93	1	92	3.77e-45	140
MS.gene062988.t1	MTR_4g072370	72.527	91	22	1	1	91	1	88	1.21e-44	139
MS.gene062988.t1	MTR_4g072870	69.231	91	28	0	1	91	1	91	2.81e-44	138
MS.gene062988.t1	MTR_3g110032	68.817	93	29	0	1	93	1	93	2.89e-44	138
MS.gene062988.t1	MTR_4g072480	69.892	93	27	1	1	93	1	92	2.96e-44	138
MS.gene062988.t1	MTR_3g117630	72.222	90	25	0	4	93	3	92	4.80e-44	137
MS.gene062988.t1	MTR_4g072570	68.817	93	28	1	1	93	1	92	5.48e-44	137
MS.gene062988.t1	MTR_4g072530	68.132	91	28	1	1	91	1	90	5.70e-44	137
MS.gene062988.t1	MTR_4g050700	67.742	93	30	0	1	93	1	93	6.09e-44	137
MS.gene062988.t1	MTR_2g012410	67.742	93	30	0	1	93	1	93	6.09e-44	137
MS.gene062988.t1	MTR_4g072620	68.817	93	28	1	1	93	1	92	8.68e-44	137
MS.gene062988.t1	MTR_4g072680	69.892	93	27	1	1	93	1	92	9.17e-44	137
MS.gene062988.t1	MTR_4g072460	69.892	93	27	1	1	93	1	92	9.48e-44	137
MS.gene062988.t1	MTR_3g084220	69.892	93	27	1	1	93	1	92	1.23e-43	137
MS.gene062988.t1	MTR_4g072220	66.667	93	31	0	1	93	1	93	1.64e-43	136
MS.gene062988.t1	MTR_4g072850	75.532	94	22	1	1	93	1	94	2.61e-43	136
MS.gene062988.t1	MTR_4g072300	68.132	91	29	0	1	91	1	91	2.91e-43	135
MS.gene062988.t1	MTR_4g072730	68.478	92	28	1	1	92	1	91	4.22e-43	135
MS.gene062988.t1	MTR_4g072580	71.429	91	20	1	1	91	1	85	8.55e-43	134
MS.gene062988.t1	MTR_4g072890	68.132	91	29	0	1	91	1	91	2.73e-42	133
MS.gene062988.t1	MTR_4g072260	66.667	93	31	0	1	93	1	93	3.20e-42	133
MS.gene062988.t1	MTR_3g084260	65.591	93	32	0	1	93	1	93	4.64e-42	132
MS.gene062988.t1	MTR_4g072740	71.429	91	20	1	1	91	1	85	5.09e-42	132
MS.gene062988.t1	MTR_3g084250	66.667	93	30	1	1	93	1	92	5.49e-42	132
MS.gene062988.t1	MTR_3g110042	71.591	88	24	1	1	88	1	87	1.13e-41	132
MS.gene062988.t1	MTR_4g072490	70.330	91	21	1	1	91	1	85	2.45e-41	130
MS.gene062988.t1	MTR_4g072830	70.000	90	24	1	1	90	1	87	4.49e-41	130
MS.gene062988.t1	MTR_4g072330	64.835	91	29	1	1	91	1	88	6.38e-41	130
MS.gene062988.t1	MTR_4g072470	69.231	91	22	1	1	91	1	85	1.95e-40	128
MS.gene062988.t1	MTR_4g072290	66.667	93	17	1	1	93	1	79	4.49e-40	127
MS.gene062988.t1	MTR_5g008360	72.152	79	22	0	15	93	5	83	7.98e-40	127
MS.gene062988.t1	MTR_4g072660	65.591	93	26	1	1	93	1	87	1.29e-39	126
MS.gene062988.t1	MTR_4g072610	69.231	91	21	1	1	91	1	84	2.42e-39	125
MS.gene062988.t1	MTR_4g072940	70.652	92	26	1	3	93	33	124	3.75e-39	126
MS.gene062988.t1	MTR_4g072465	65.934	91	26	1	1	91	1	86	2.58e-38	123
MS.gene062988.t1	MTR_4g072600	65.934	91	25	1	1	91	1	85	2.97e-38	123
MS.gene062988.t1	MTR_4g072630	64.835	91	27	1	1	91	1	86	4.52e-38	122
MS.gene062988.t1	MTR_5g008370	67.368	95	24	2	1	92	1	91	7.38e-38	124
MS.gene062988.t1	MTR_3g084190	69.892	93	27	1	1	93	1	92	1.56e-37	121
MS.gene062988.t1	MTR_4g072820	66.304	92	23	2	1	91	1	85	2.17e-37	120
MS.gene062988.t1	MTR_4g072540	70.330	91	22	1	1	91	1	86	3.36e-37	120
MS.gene062988.t1	MTR_4g072650	67.033	91	23	2	1	91	1	84	4.14e-37	120
MS.gene062988.t1	MTR_3g084160	67.742	93	29	1	1	93	1	92	5.69e-37	120
MS.gene062988.t1	MTR_3g084210	65.591	93	31	1	1	93	1	92	1.07e-36	119
MS.gene062988.t1	MTR_8g461420	68.132	91	28	1	1	91	1	90	1.21e-36	119
MS.gene062988.t1	MTR_4g072380	67.391	92	23	2	1	91	1	86	2.44e-36	118
MS.gene062988.t1	MTR_3g084230	68.132	91	28	1	1	91	1	90	2.91e-36	118
MS.gene062988.t1	MTR_4g072550	72.603	73	20	0	21	93	31	103	7.85e-36	117
MS.gene062988.t1	MTR_4g072670	64.835	91	27	1	1	91	1	86	9.33e-36	117
MS.gene062988.t1	MTR_4g072720	77.143	70	16	0	22	91	17	86	1.60e-35	116
MS.gene062988.t1	MTR_4g072590	68.132	91	23	1	1	91	1	85	3.06e-34	113
MS.gene062988.t1	MTR_3g110045	65.934	91	30	1	3	93	62	151	3.55e-34	115
MS.gene062988.t1	MTR_4g072510	67.033	91	25	1	1	91	1	86	4.23e-34	112
MS.gene062988.t1	MTR_3g084200	69.863	73	21	1	1	73	1	72	2.57e-33	111
MS.gene062988.t1	MTR_5g008350	66.250	80	21	1	1	80	1	74	1.18e-32	108
MS.gene062988.t1	MTR_4g072910	57.447	94	34	1	4	91	7	100	2.27e-32	108
MS.gene062988.t1	MTR_4g072560	52.041	98	40	3	1	91	1	98	3.21e-31	105
MS.gene062988.t1	MTR_4g072690	61.538	91	29	1	1	91	1	85	7.34e-31	104
MS.gene062988.t1	MTR_4g072980	52.632	95	43	2	1	93	1	95	8.74e-31	104
MS.gene062988.t1	MTR_4g072450	61.538	91	29	1	1	91	1	85	4.43e-30	102
MS.gene062988.t1	MTR_4g072770	68.182	66	21	0	26	91	15	80	1.47e-28	98.6
MS.gene062988.t1	MTR_4g072750	62.667	75	25	2	1	73	1	74	4.46e-28	97.4
MS.gene062988.t1	MTR_3g117640	60.870	69	26	1	25	92	33	101	8.39e-28	97.4
MS.gene062988.t1	MTR_3g113310	48.315	89	39	2	8	90	18	105	1.21e-26	94.4
MS.gene062988.t1	MTR_3g110035	58.442	77	31	1	17	93	63	138	2.91e-26	94.4
MS.gene062988.t1	MTR_3g117610	50.549	91	36	2	8	90	19	108	3.60e-26	93.6
MS.gene062988.t1	MTR_4g072190	54.321	81	34	2	8	88	20	97	4.15e-26	92.8
MS.gene062988.t1	MTR_4g072280	56.000	75	33	0	1	75	1	75	4.86e-26	92.0
MS.gene062988.t1	MTR_6g077850	44.318	88	48	1	4	91	13	99	1.72e-25	91.3
MS.gene062988.t1	MTR_5g021820	50.575	87	38	2	8	90	18	103	3.43e-25	90.9
MS.gene062988.t1	MTR_8g461400	52.688	93	17	2	1	93	1	66	7.17e-25	89.0
MS.gene062988.t1	MTR_8g076040	50.588	85	37	2	8	88	19	102	2.19e-24	88.6
MS.gene062988.t1	MTR_4g072930	47.059	85	41	1	11	91	26	110	8.42e-23	84.7
MS.gene062988.t1	MTR_4g072840	48.913	92	14	3	1	91	1	60	2.42e-19	74.7
MS.gene062988.t1	MTR_4g005310	52.857	70	29	2	16	84	55	121	1.66e-17	72.4
MS.gene062988.t1	MTR_4g124750	53.030	66	30	1	25	90	68	132	5.68e-17	71.2
MS.gene062988.t1	MTR_1g024085	50.000	70	31	2	15	84	29	94	1.24e-16	70.1
MS.gene062988.t1	MTR_2g043960	54.839	62	27	1	25	86	75	135	1.73e-16	70.1
MS.gene062988.t1	MTR_3g092220	42.500	80	41	3	9	86	18	94	2.18e-15	66.2
MS.gene062988.t1	MTR_1g009150	47.887	71	36	1	16	86	61	130	4.91e-15	66.6
MS.gene062988.t1	MTR_4g025830	45.588	68	33	2	26	90	79	145	8.76e-15	65.9
MS.gene062988.t1	MTR_0388s0020	43.056	72	37	2	20	88	69	139	1.01e-14	65.1
MS.gene062988.t1	MTR_7g118010	50.794	63	28	2	26	86	23	84	1.02e-14	64.3
MS.gene062988.t1	MTR_1g061570	41.176	85	46	2	8	92	4	84	1.83e-14	63.9
MS.gene062988.t1	MTR_1g063950	44.928	69	37	1	15	83	37	104	3.31e-14	63.2
MS.gene062988.t1	MTR_4g005320	49.180	61	30	1	26	86	70	129	5.77e-14	63.5
MS.gene062988.t1	MTR_1g094750	42.857	77	39	2	11	83	31	106	6.35e-14	62.4
MS.gene062988.t1	MTR_3g109160	47.761	67	34	1	26	92	69	134	1.31e-13	62.8
MS.gene062988.t1	MTR_1g059770	41.538	65	37	1	26	90	49	112	2.58e-13	61.2
MS.gene062988.t1	MTR_4g072160	47.059	68	35	1	23	90	34	100	3.43e-13	61.2
MS.gene062988.t1	MTR_8g026730	47.541	61	29	2	26	84	27	86	3.70e-13	60.1
MS.gene062988.t1	MTR_7g101740	45.312	64	34	1	25	88	39	101	1.40e-12	58.9
MS.gene062988.t1	MTR_8g461210	38.462	91	52	3	4	92	14	102	1.73e-12	58.5
MS.gene062988.t1	MTR_3g105900	72.222	36	10	0	25	60	1171	1206	2.33e-12	61.2
MS.gene062988.t1	MTR_3g098970	34.568	81	51	2	13	93	41	119	2.63e-12	58.9
MS.gene062988.t1	MTR_2g095430	45.588	68	30	3	17	78	34	100	7.95e-12	57.4
MS.gene062988.t1	MTR_7g104940	40.323	62	36	1	29	90	53	113	2.05e-11	56.2
MS.gene062988.t1	MTR_8g101520	35.632	87	51	2	9	91	29	114	2.75e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062988.t1	AT4G38840	63.529	85	30	1	8	91	15	99	5.84e-33	110
MS.gene062988.t1	AT5G18020	65.789	76	25	1	17	91	15	90	4.38e-32	107
MS.gene062988.t1	AT3G03840	62.791	86	27	2	9	92	13	95	6.46e-32	107
MS.gene062988.t1	AT5G18060	65.789	76	25	1	17	91	15	90	6.60e-32	107
MS.gene062988.t1	AT5G18030	68.919	74	22	1	19	91	15	88	9.15e-32	107
MS.gene062988.t1	AT5G18080	65.789	76	25	1	17	91	15	90	1.41e-31	106
MS.gene062988.t1	AT5G18050	63.158	76	27	1	17	91	15	90	5.78e-31	105
MS.gene062988.t1	AT5G18010	64.474	76	26	1	17	91	15	90	5.78e-31	105
MS.gene062988.t1	AT2G21200	67.606	71	22	1	21	90	16	86	1.34e-30	103
MS.gene062988.t1	AT4G38825	65.278	72	24	1	21	91	18	89	9.28e-30	102
MS.gene062988.t1	AT2G21210	60.811	74	27	1	20	91	22	95	3.21e-29	100
MS.gene062988.t1	AT3G03820	54.255	94	37	2	2	92	6	96	3.46e-29	100
MS.gene062988.t1	AT3G03850	69.118	68	19	1	27	92	26	93	3.74e-29	100
MS.gene062988.t1	AT4G38850	58.621	87	23	2	8	91	13	89	5.29e-29	100
MS.gene062988.t1	AT3G03830	57.955	88	30	2	11	91	5	92	1.41e-28	99.0
MS.gene062988.t1	AT2G21210	60.811	74	27	1	20	91	89	162	1.81e-28	100
MS.gene062988.t1	AT4G34770	59.211	76	29	1	19	92	28	103	5.74e-28	97.8
MS.gene062988.t1	AT4G34810	56.250	80	29	3	17	90	38	117	1.05e-26	95.1
MS.gene062988.t1	AT4G38860	51.765	85	37	1	8	88	18	102	4.43e-26	93.2
MS.gene062988.t1	AT4G13790	51.765	85	33	3	8	90	13	91	1.38e-25	91.3
MS.gene062988.t1	AT4G34800	50.000	86	35	2	1	83	1	81	2.58e-25	90.9
MS.gene062988.t1	AT4G34760	49.425	87	37	2	8	88	19	104	4.21e-25	90.5
MS.gene062988.t1	AT2G21220	60.000	65	25	1	24	88	38	101	1.38e-24	89.4
MS.gene062988.t1	AT1G75580	47.253	91	39	2	8	90	18	107	1.96e-24	89.0
MS.gene062988.t1	AT1G19830	47.917	96	36	3	8	90	18	112	6.73e-23	85.5
MS.gene062988.t1	AT2G16580	46.591	88	39	2	8	88	19	105	5.65e-22	82.8
MS.gene062988.t1	AT4G36110	46.988	83	41	2	8	88	20	101	1.96e-21	81.3
MS.gene062988.t1	AT4G34790	56.716	67	26	2	26	89	39	105	3.45e-21	80.9
MS.gene062988.t1	AT4G34780	43.617	94	47	2	4	91	3	96	3.53e-21	80.5
MS.gene062988.t1	AT2G18010	54.688	64	28	1	25	88	47	109	9.76e-20	77.0
MS.gene062988.t1	AT5G66260	45.349	86	44	2	8	91	14	98	1.32e-19	76.6
MS.gene062988.t1	AT3G20220	48.684	76	37	2	15	89	36	110	1.72e-19	76.6
MS.gene062988.t1	AT3G43120	55.000	60	26	1	25	84	78	136	6.28e-17	71.2
MS.gene062988.t1	AT5G20810	51.471	68	32	1	25	92	78	144	1.89e-16	70.1
MS.gene062988.t1	AT5G20810	53.030	66	30	1	25	90	78	142	4.07e-16	69.7
MS.gene062988.t1	AT2G46690	41.667	84	44	3	13	92	10	92	1.71e-15	66.6
MS.gene062988.t1	AT3G51200	50.000	64	30	2	21	83	34	96	3.13e-15	65.5
MS.gene062988.t1	AT4G34750	45.312	64	34	1	25	88	36	98	7.69e-15	65.5
MS.gene062988.t1	AT4G34750	45.312	64	34	1	25	88	36	98	7.69e-15	65.5
MS.gene062988.t1	AT1G75590	41.176	85	45	2	4	84	16	99	2.31e-14	64.3
MS.gene062988.t1	AT2G45210	41.096	73	39	2	21	90	74	145	3.04e-14	64.3
MS.gene062988.t1	AT4G31320	49.231	65	32	1	26	90	80	143	5.31e-14	64.3
MS.gene062988.t1	AT5G10990	46.667	60	31	1	25	84	40	98	9.80e-14	62.8
MS.gene062988.t1	AT3G61900	42.857	70	36	2	25	91	29	97	1.20e-13	62.4
MS.gene062988.t1	AT1G19840	47.059	68	33	2	19	84	32	98	1.79e-13	62.0
MS.gene062988.t1	AT2G24400	50.000	66	32	1	26	91	64	128	2.06e-13	62.4
MS.gene062988.t1	AT3G60690	41.096	73	39	2	22	91	84	155	7.86e-13	60.8
MS.gene062988.t1	AT4G00880	50.794	63	28	2	26	86	28	89	8.64e-13	59.7
MS.gene062988.t1	AT2G37030	47.458	59	30	1	25	83	48	105	1.50e-12	58.9
MS.gene062988.t1	AT5G53590	33.333	96	58	2	1	91	21	115	2.24e-12	58.9
MS.gene062988.t1	AT4G09530	40.845	71	36	3	17	84	22	89	3.33e-11	55.1

Find 27 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTCAAATTGAGGAAGAGTT+TGG	0.355201	4.2:+35380211	MS.gene062988:CDS
CTCAGCAAATCTTGAAATGA+AGG	0.381225	4.2:-35380190	None:intergenic
TTATAACATCTCGCATGAAC+GGG	0.462448	4.2:+35380290	MS.gene062988:CDS
GCAAATCTTGAAATGAAGGT+TGG	0.509792	4.2:-35380186	None:intergenic
GGATATCTTGCAGTATATGT+TGG	0.514243	4.2:+35380121	MS.gene062988:CDS
AGATTTGCTGAGTCAAATTG+AGG	0.517425	4.2:+35380201	MS.gene062988:CDS
TATAAGTTGAAACATATCTT+CGG	0.520039	4.2:-35380272	None:intergenic
CATATCTTCGGTGCAAGGAA+TGG	0.521275	4.2:-35380260	None:intergenic
GGTTGGCTCAAGTATGATAC+GGG	0.521678	4.2:-35380169	None:intergenic
GTTTCCCTGGTATCATCAGA+AGG	0.529309	4.2:+35380047	MS.gene062988:CDS
AGGTTGGCTCAAGTATGATA+CGG	0.529579	4.2:-35380170	None:intergenic
CTTATAACATCTCGCATGAA+CGG	0.530410	4.2:+35380289	MS.gene062988:CDS
TATACTGCAAGATATCCCTT+TGG	0.554191	4.2:-35380115	None:intergenic
AGGAATGGTAAGGCCACCCA+TGG	0.560219	4.2:-35380245	None:intergenic
TGAAACATATCTTCGGTGCA+AGG	0.560974	4.2:-35380265	None:intergenic
GTTTGGATATGATCATCCCA+TGG	0.570301	4.2:+35380228	MS.gene062988:CDS
GATGCCCTTCTGATGATACC+AGG	0.570722	4.2:-35380052	None:intergenic
AAAAGCTGTTGATGTGCCAA+AGG	0.571530	4.2:+35380099	MS.gene062988:CDS
CTTCGGTGCAAGGAATGGTA+AGG	0.572529	4.2:-35380255	None:intergenic
AAAGCTGTTGATGTGCCAAA+GGG	0.580562	4.2:+35380100	MS.gene062988:CDS
GGATATGATCATCCCATGGG+TGG	0.600402	4.2:+35380232	MS.gene062988:CDS
TTTCCCTGGTATCATCAGAA+GGG	0.622803	4.2:+35380048	MS.gene062988:CDS
TTTGGATATGATCATCCCAT+GGG	0.641263	4.2:+35380229	MS.gene062988:CDS
ATGCCCTTCTGATGATACCA+GGG	0.658200	4.2:-35380051	None:intergenic
GGAATGGTAAGGCCACCCAT+GGG	0.680903	4.2:-35380244	None:intergenic
GTTGGCTCAAGTATGATACG+GGG	0.770839	4.2:-35380168	None:intergenic
ATGTTGGAGAGAAACAGACG+CGG	0.843088	4.2:+35380137	MS.gene062988:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATAAGTTGAAACATATCTT+CGG	-	chr4.2:35380275-35380294	None:intergenic	20.0%
	AGTCAAATTGAGGAAGAGTT+TGG	+	chr4.2:35380211-35380230	MS.gene062988:CDS	35.0%
	CTCAGCAAATCTTGAAATGA+AGG	-	chr4.2:35380193-35380212	None:intergenic	35.0%
	CTTATAACATCTCGCATGAA+CGG	+	chr4.2:35380289-35380308	MS.gene062988:CDS	35.0%
	GCAAATCTTGAAATGAAGGT+TGG	-	chr4.2:35380189-35380208	None:intergenic	35.0%
	GGATATCTTGCAGTATATGT+TGG	+	chr4.2:35380121-35380140	MS.gene062988:CDS	35.0%
	TATACTGCAAGATATCCCTT+TGG	-	chr4.2:35380118-35380137	None:intergenic	35.0%
	TTATAACATCTCGCATGAAC+GGG	+	chr4.2:35380290-35380309	MS.gene062988:CDS	35.0%
	TTTGGATATGATCATCCCAT+GGG	+	chr4.2:35380229-35380248	MS.gene062988:CDS	35.0%
!!	AGATTTGCTGAGTCAAATTG+AGG	+	chr4.2:35380201-35380220	MS.gene062988:CDS	35.0%
	AAAAGCTGTTGATGTGCCAA+AGG	+	chr4.2:35380099-35380118	MS.gene062988:CDS	40.0%
	AAAGCTGTTGATGTGCCAAA+GGG	+	chr4.2:35380100-35380119	MS.gene062988:CDS	40.0%
	GTTTGGATATGATCATCCCA+TGG	+	chr4.2:35380228-35380247	MS.gene062988:CDS	40.0%
	TTTCCCTGGTATCATCAGAA+GGG	+	chr4.2:35380048-35380067	MS.gene062988:CDS	40.0%
!	AGGTTGGCTCAAGTATGATA+CGG	-	chr4.2:35380173-35380192	None:intergenic	40.0%
!	TGAAACATATCTTCGGTGCA+AGG	-	chr4.2:35380268-35380287	None:intergenic	40.0%
!!!	ATCAGAAGGGCATCTTTTTC+TGG	+	chr4.2:35380061-35380080	MS.gene062988:CDS	40.0%
!!!	CAACAGCTTTTGAAGCTGAT+CGG	-	chr4.2:35380090-35380109	None:intergenic	40.0%
	ATGCCCTTCTGATGATACCA+GGG	-	chr4.2:35380054-35380073	None:intergenic	45.0%
	ATGTTGGAGAGAAACAGACG+CGG	+	chr4.2:35380137-35380156	MS.gene062988:CDS	45.0%
	GTTTCCCTGGTATCATCAGA+AGG	+	chr4.2:35380047-35380066	MS.gene062988:CDS	45.0%
!	CATATCTTCGGTGCAAGGAA+TGG	-	chr4.2:35380263-35380282	None:intergenic	45.0%
!	GGTTGGCTCAAGTATGATAC+GGG	-	chr4.2:35380172-35380191	None:intergenic	45.0%
!	GTTGGCTCAAGTATGATACG+GGG	-	chr4.2:35380171-35380190	None:intergenic	45.0%
	GATGCCCTTCTGATGATACC+AGG	-	chr4.2:35380055-35380074	None:intergenic	50.0%
	GGATATGATCATCCCATGGG+TGG	+	chr4.2:35380232-35380251	MS.gene062988:CDS	50.0%
!	CTTCGGTGCAAGGAATGGTA+AGG	-	chr4.2:35380258-35380277	None:intergenic	50.0%
	AGGAATGGTAAGGCCACCCA+TGG	-	chr4.2:35380248-35380267	None:intergenic	55.0%
	GGAATGGTAAGGCCACCCAT+GGG	-	chr4.2:35380247-35380266	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35380037	35380318	35380037	ID=MS.gene062988
chr4.2	mRNA	35380037	35380318	35380037	ID=MS.gene062988.t1;Parent=MS.gene062988
chr4.2	exon	35380037	35380318	35380037	ID=MS.gene062988.t1.exon1;Parent=MS.gene062988.t1
chr4.2	CDS	35380037	35380318	35380037	ID=cds.MS.gene062988.t1;Parent=MS.gene062988.t1

Gene Sequence	>MS.gene062988 ATGGGTTTTCGTTTCCCTGGTATCATCAGAAGGGCATCTTTTTCTGGAAACCGATCAGCTTCAAAAGCTGTTGATGTGCCAAAGGGATATCTTGCAGTATATGTTGGAGAGAAACAGACGCGGTATGTGATCCCCGTATCATACTTGAGCCAACCTTCATTTCAAGATTTGCTGAGTCAAATTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTTACCATTCCTTGCACCGAAGATATGTTTCAACTTATAACATCTCGCATGAACGGGCTATGA
Protein sequence	>MS.gene062988.t1 MGFRFPGIIRRASFSGNRSASKAVDVPKGYLAVYVGEKQTRYVIPVSYLSQPSFQDLLSQIEEEFGYDHPMGGLTIPCTEDMFQLITSRMNGL