AlfalfaGEDB | MS.gene50687

M. sativa cultivar XinJiangDaYe / MS.gene50687

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50687.t1	AES89298.1	93.5	93	5	1	1	93	1	92	3.00E-40	174.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50687.t1	P33083	81.3	91	16	1	1	91	1	90	5.1e-36	151.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50687.t1	G7JL23	93.5	93	5	1	1	93	1	92	2.2e-40	174.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene003576	MS.gene50687	PPI
MS.gene003579	MS.gene50687	PPI
MS.gene003580	MS.gene50687	PPI
MS.gene003581	MS.gene50687	PPI
MS.gene003582	MS.gene50687	PPI
MS.gene003585	MS.gene50687	PPI
MS.gene003593	MS.gene50687	PPI
MS.gene003597	MS.gene50687	PPI
MS.gene003603	MS.gene50687	PPI
MS.gene003605	MS.gene50687	PPI

Showing 1 to 10 of 111 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50687.t1	MTR_4g072250	93.548	93	5	1	1	93	1	92	3.93e-59	176
MS.gene50687.t1	MTR_4g072310	86.022	93	13	0	1	93	1	93	1.83e-57	171
MS.gene50687.t1	MTR_4g072880	83.871	93	15	0	1	93	1	93	1.78e-56	169
MS.gene50687.t1	MTR_4g072230	82.796	93	14	1	1	93	1	91	5.04e-54	163
MS.gene50687.t1	MTR_4g072270	81.720	93	17	0	1	93	1	93	1.77e-53	161
MS.gene50687.t1	MTR_4g072860	80.645	93	18	0	1	93	1	93	2.58e-52	159
MS.gene50687.t1	MTR_3g084150	77.419	93	20	1	1	93	1	92	9.89e-51	154
MS.gene50687.t1	MTR_8g461410	76.344	93	21	1	1	93	1	92	1.95e-50	154
MS.gene50687.t1	MTR_3g084170	77.419	93	20	1	1	93	1	92	4.70e-50	153
MS.gene50687.t1	MTR_3g084180	76.344	93	21	1	1	93	1	92	9.28e-50	152

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50687.t1	AT4G38840	57.576	99	34	2	1	91	1	99	3.00e-34	113
MS.gene50687.t1	AT5G18050	65.789	76	25	1	17	91	15	90	1.77e-33	111
MS.gene50687.t1	AT5G18060	67.105	76	24	1	17	91	15	90	2.16e-33	110
MS.gene50687.t1	AT5G18020	64.474	76	26	1	17	91	15	90	1.37e-32	108
MS.gene50687.t1	AT5G18080	65.789	76	25	1	17	91	15	90	3.24e-32	108
MS.gene50687.t1	AT5G18030	66.667	72	23	1	21	91	17	88	2.27e-31	105
MS.gene50687.t1	AT5G18010	63.158	76	27	1	17	91	15	90	5.07e-31	105
MS.gene50687.t1	AT2G21200	65.385	78	24	2	16	90	9	86	6.64e-31	104
MS.gene50687.t1	AT3G03840	61.842	76	27	1	19	92	20	95	3.41e-30	103
MS.gene50687.t1	AT4G34770	65.789	76	24	1	19	92	28	103	4.60e-30	103

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Find 24 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGTGGACGTGCCAA+AGG	0.522509	4.3:-33558403	MS.gene50687:CDS
AAAGTTGTGGACGTGCCAAA+GGG	0.566864	4.3:-33558402	MS.gene50687:CDS
ACAAGTCTTGAAACGATGGT+TGG	0.594658	4.3:+33558316	None:intergenic
AGACTTGTTGAGTCAAGCCG+AGG	0.633253	4.3:-33558301	MS.gene50687:CDS
AGTCAAGCCGAGGAAGAGTT+TGG	0.367159	4.3:-33558291	MS.gene50687:CDS
ATCATATCCAAACTCTTCCT+CGG	0.532636	4.3:+33558284	None:intergenic
ATGACTTTCTGATGATACCA+GGG	0.664611	4.3:+33558451	None:intergenic
CACATAACATCTCGCTTGAA+CGG	0.512733	4.3:-33558213	MS.gene50687:CDS
CCGAGCAATTTCAAAAGTTG+TGG	0.513570	4.3:-33558415	MS.gene50687:CDS
CTCAACAAGTCTTGAAACGA+TGG	0.576425	4.3:+33558312	None:intergenic

Showing 1 to 10 of 24 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGATATGATCATCCAAT+GGG	-	chr4.3:33558398-33558417	MS.gene50687:CDS	30.0%
ATCATATCCAAACTCTTCCT+CGG	+	chr4.3:33558390-33558409	None:intergenic	35.0%
ATGACTTTCTGATGATACCA+GGG	+	chr4.3:33558223-33558242	None:intergenic	35.0%
GTTTGGATATGATCATCCAA+TGG	-	chr4.3:33558397-33558416	MS.gene50687:CDS	35.0%
ACAAGTCTTGAAACGATGGT+TGG	+	chr4.3:33558358-33558377	None:intergenic	40.0%
CACATAACATCTCGCTTGAA+CGG	-	chr4.3:33558458-33558477	MS.gene50687:CDS	40.0%
CCGAGCAATTTCAAAAGTTG+TGG	-	chr4.3:33558256-33558275	MS.gene50687:CDS	40.0%
CTCAACAAGTCTTGAAACGA+TGG	+	chr4.3:33558362-33558381	None:intergenic	40.0%
GATGACTTTCTGATGATACC+AGG	+	chr4.3:33558224-33558243	None:intergenic	40.0%
GGATATCTTGCAGTGTATGT+TGG	-	chr4.3:33558290-33558309	MS.gene50687:CDS	40.0%

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	33558206	33558487	33558206	ID=MS.gene50687
chr4.3	mRNA	33558206	33558487	33558206	ID=MS.gene50687.t1;Parent=MS.gene50687
chr4.3	exon	33558206	33558487	33558206	ID=MS.gene50687.t1.exon1;Parent=MS.gene50687.t1
chr4.3	CDS	33558206	33558487	33558206	ID=cds.MS.gene50687.t1;Parent=MS.gene50687.t1

Gene Sequence	>MS.gene50687 ATGGGTTTTCGTGTCCCTGGTATCATCAGAAAGTCATCATTTTCTGCAAGCCGAGCAATTTCAAAAGTTGTGGACGTGCCAAAGGGATATCTTGCAGTGTATGTTGGAGAGAAACAAAAGCCATTTGTGATCCCCATGTCATACTTGAACCAACCATCGTTTCAAGACTTGTTGAGTCAAGCCGAGGAAGAGTTTGGATATGATCATCCAATGGGTGGCCTCACCATTCCTTGCACTGAAGATGTCTTTCAACACATAACATCTCGCTTGAACGGAATATGA
Protein sequence	>MS.gene50687.t1 MGFRVPGIIRKSSFSASRAISKVVDVPKGYLAVYVGEKQKPFVIPMSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCTEDVFQHITSRLNGI