AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003580.t1 MTR_4g072860 95.699 93 4 0 1 93 1 93 2.91e-63 186
MS.gene003580.t1 MTR_4g072310 81.720 93 17 0 1 93 1 93 5.93e-53 160
MS.gene003580.t1 MTR_4g072880 79.570 93 19 0 1 93 1 93 2.52e-52 159
MS.gene003580.t1 MTR_4g072270 78.495 93 20 0 1 93 1 93 4.67e-52 158
MS.gene003580.t1 MTR_4g072230 83.871 93 13 1 1 93 1 91 6.66e-52 157
MS.gene003580.t1 MTR_4g072500 77.419 93 20 1 1 93 1 92 1.02e-49 152
MS.gene003580.t1 MTR_4g072250 78.495 93 19 1 1 93 1 92 1.54e-49 151
MS.gene003580.t1 MTR_4g072640 76.923 91 20 1 1 91 1 90 4.43e-47 145
MS.gene003580.t1 MTR_4g072530 74.725 91 22 1 1 91 1 90 8.23e-47 144
MS.gene003580.t1 MTR_4g072480 72.043 93 25 1 1 93 1 92 3.73e-45 140
MS.gene003580.t1 MTR_3g084170 72.043 93 25 1 1 93 1 92 9.57e-45 139
MS.gene003580.t1 MTR_3g084150 70.968 93 26 1 1 93 1 92 3.31e-44 138
MS.gene003580.t1 MTR_4g072620 70.968 93 26 1 1 93 1 92 3.86e-44 138
MS.gene003580.t1 MTR_3g084240 70.968 93 26 1 1 93 1 92 6.11e-44 137
MS.gene003580.t1 MTR_8g461410 68.817 93 28 1 1 93 1 92 7.29e-44 137
MS.gene003580.t1 MTR_4g072850 75.532 94 22 1 1 93 1 94 8.92e-44 137
MS.gene003580.t1 MTR_4g072730 71.739 92 25 1 1 92 1 91 2.41e-43 136
MS.gene003580.t1 MTR_4g072570 73.118 93 24 1 1 93 1 92 2.44e-43 136
MS.gene003580.t1 MTR_3g084180 69.892 93 27 1 1 93 1 92 4.50e-43 135
MS.gene003580.t1 MTR_4g050700 66.667 93 31 0 1 93 1 93 5.35e-43 135
MS.gene003580.t1 MTR_2g012410 66.667 93 31 0 1 93 1 93 5.35e-43 135
MS.gene003580.t1 MTR_4g072680 69.892 93 27 1 1 93 1 92 3.04e-42 133
MS.gene003580.t1 MTR_3g084220 68.817 93 28 1 1 93 1 92 3.46e-42 133
MS.gene003580.t1 MTR_3g110032 67.742 93 30 0 1 93 1 93 4.96e-42 132
MS.gene003580.t1 MTR_4g072460 69.892 93 27 1 1 93 1 92 5.08e-42 132
MS.gene003580.t1 MTR_3g117630 71.111 90 26 0 4 93 3 92 2.31e-41 131
MS.gene003580.t1 MTR_4g072870 68.132 91 29 0 1 91 1 91 2.34e-41 131
MS.gene003580.t1 MTR_3g110042 72.727 88 23 1 1 88 1 87 2.88e-41 130
MS.gene003580.t1 MTR_4g072240 65.934 91 31 0 1 91 1 91 3.22e-41 130
MS.gene003580.t1 MTR_4g072370 72.527 91 22 1 1 91 1 88 7.60e-41 129
MS.gene003580.t1 MTR_3g110038 67.742 93 29 1 1 93 1 92 7.72e-41 129
MS.gene003580.t1 MTR_3g084250 66.667 93 30 1 1 93 1 92 1.49e-40 129
MS.gene003580.t1 MTR_4g072580 72.527 91 19 1 1 91 1 85 1.62e-40 129
MS.gene003580.t1 MTR_4g072330 70.330 91 24 1 1 91 1 88 2.96e-40 128
MS.gene003580.t1 MTR_4g072660 67.742 93 24 1 1 93 1 87 3.65e-40 128
MS.gene003580.t1 MTR_4g072490 70.330 91 21 1 1 91 1 85 4.24e-40 127
MS.gene003580.t1 MTR_4g072300 63.736 91 33 0 1 91 1 91 6.23e-40 127
MS.gene003580.t1 MTR_4g072740 72.527 91 19 1 1 91 1 85 6.50e-40 127
MS.gene003580.t1 MTR_3g084260 64.516 93 33 0 1 93 1 93 1.13e-39 127
MS.gene003580.t1 MTR_4g072220 63.441 93 34 0 1 93 1 93 1.79e-39 126
MS.gene003580.t1 MTR_4g072600 70.330 91 21 1 1 91 1 85 1.93e-39 126
MS.gene003580.t1 MTR_5g008370 71.277 94 22 2 1 92 1 91 3.57e-39 127
MS.gene003580.t1 MTR_5g008360 74.684 79 20 0 15 93 5 83 4.28e-39 125
MS.gene003580.t1 MTR_4g072470 71.429 91 20 1 1 91 1 85 6.03e-39 124
MS.gene003580.t1 MTR_4g072830 72.222 90 22 1 1 90 1 87 7.05e-39 124
MS.gene003580.t1 MTR_4g072940 70.652 92 26 1 3 93 33 124 1.36e-38 125
MS.gene003580.t1 MTR_4g072260 61.290 93 36 0 1 93 1 93 2.14e-38 123
MS.gene003580.t1 MTR_4g072890 62.637 91 34 0 1 91 1 91 2.22e-38 123
MS.gene003580.t1 MTR_3g084210 67.742 93 29 1 1 93 1 92 7.24e-38 122
MS.gene003580.t1 MTR_3g084190 66.667 93 30 1 1 93 1 92 1.61e-37 121
MS.gene003580.t1 MTR_8g461420 68.132 91 28 1 1 91 1 90 5.62e-37 120
MS.gene003580.t1 MTR_3g084230 68.132 91 28 1 1 91 1 90 2.01e-36 118
MS.gene003580.t1 MTR_4g072290 64.516 93 19 1 1 93 1 79 2.05e-36 118
MS.gene003580.t1 MTR_4g072380 67.391 92 23 2 1 91 1 86 2.60e-36 118
MS.gene003580.t1 MTR_4g072610 68.132 91 22 1 1 91 1 84 4.19e-36 117
MS.gene003580.t1 MTR_3g084160 63.441 93 33 1 1 93 1 92 9.41e-36 117
MS.gene003580.t1 MTR_4g072540 69.231 91 23 1 1 91 1 86 2.92e-35 115
MS.gene003580.t1 MTR_4g072630 63.736 91 28 1 1 91 1 86 3.48e-35 115
MS.gene003580.t1 MTR_3g110045 69.231 91 27 1 3 93 62 151 4.92e-35 117
MS.gene003580.t1 MTR_4g072590 70.330 91 21 1 1 91 1 85 5.84e-35 114
MS.gene003580.t1 MTR_4g072670 69.231 91 23 1 1 91 1 86 9.74e-35 114
MS.gene003580.t1 MTR_4g072465 62.637 91 29 1 1 91 1 86 1.24e-34 114
MS.gene003580.t1 MTR_4g072820 66.304 92 23 2 1 91 1 85 1.53e-34 114
MS.gene003580.t1 MTR_4g072550 70.270 74 22 0 20 93 30 103 1.68e-33 111
MS.gene003580.t1 MTR_4g072650 65.934 91 24 2 1 91 1 84 2.08e-33 110
MS.gene003580.t1 MTR_4g072720 75.714 70 17 0 22 91 17 86 2.08e-33 110
MS.gene003580.t1 MTR_4g072510 65.934 91 26 1 1 91 1 86 3.92e-32 107
MS.gene003580.t1 MTR_4g072910 67.568 74 24 0 18 91 27 100 1.12e-31 107
MS.gene003580.t1 MTR_4g072450 67.033 91 24 1 1 91 1 85 7.50e-31 104
MS.gene003580.t1 MTR_3g084200 67.123 73 23 1 1 73 1 72 8.14e-31 105
MS.gene003580.t1 MTR_5g008350 66.250 80 21 1 1 80 1 74 1.68e-30 103
MS.gene003580.t1 MTR_4g072690 67.033 91 24 1 1 91 1 85 1.16e-29 101
MS.gene003580.t1 MTR_4g072560 51.020 98 41 2 1 91 1 98 1.20e-29 101
MS.gene003580.t1 MTR_4g072980 53.684 95 42 2 1 93 1 95 8.98e-29 99.4
MS.gene003580.t1 MTR_4g072750 65.333 75 23 2 1 73 1 74 3.86e-27 95.1
MS.gene003580.t1 MTR_4g072770 69.697 66 20 0 26 91 15 80 5.12e-27 94.7
MS.gene003580.t1 MTR_3g117640 65.217 69 23 1 25 92 33 101 2.38e-26 93.6
MS.gene003580.t1 MTR_4g072280 59.459 74 30 0 1 74 1 74 2.72e-26 92.8
MS.gene003580.t1 MTR_3g110035 58.442 77 31 1 17 93 63 138 3.73e-25 91.7
MS.gene003580.t1 MTR_3g113310 48.889 90 39 2 8 91 18 106 6.54e-25 90.1
MS.gene003580.t1 MTR_4g072190 54.217 83 35 2 8 90 20 99 4.99e-24 87.8
MS.gene003580.t1 MTR_6g077850 56.716 67 29 0 25 91 33 99 6.07e-24 87.4
MS.gene003580.t1 MTR_3g117610 59.701 67 26 1 24 90 43 108 3.28e-23 85.9
MS.gene003580.t1 MTR_8g461400 50.538 93 19 2 1 93 1 66 5.67e-23 84.0
MS.gene003580.t1 MTR_5g021820 48.276 87 40 2 8 90 18 103 7.83e-21 79.7
MS.gene003580.t1 MTR_4g072930 55.072 69 27 1 27 91 42 110 2.69e-20 78.6
MS.gene003580.t1 MTR_8g076040 48.276 87 40 2 8 90 19 104 4.22e-20 77.8
MS.gene003580.t1 MTR_2g043960 53.030 66 30 1 25 90 75 139 6.89e-18 73.6
MS.gene003580.t1 MTR_4g124750 53.030 66 30 1 25 90 68 132 7.66e-18 73.6
MS.gene003580.t1 MTR_1g024085 52.174 69 29 2 16 84 30 94 5.91e-17 70.9
MS.gene003580.t1 MTR_4g072840 45.652 92 17 3 1 91 1 60 1.08e-16 67.8
MS.gene003580.t1 MTR_4g072160 55.556 63 25 2 25 86 36 96 5.14e-16 68.2
MS.gene003580.t1 MTR_4g005310 49.315 73 33 2 15 86 54 123 5.87e-16 68.6
MS.gene003580.t1 MTR_1g061570 51.471 68 32 1 25 92 18 84 8.40e-16 67.4
MS.gene003580.t1 MTR_7g118010 50.000 68 31 2 26 91 23 89 1.07e-15 66.6
MS.gene003580.t1 MTR_3g092220 53.030 66 28 2 21 84 28 92 3.83e-15 65.5
MS.gene003580.t1 MTR_8g461210 42.529 87 48 2 4 90 14 98 6.20e-15 65.1
MS.gene003580.t1 MTR_1g063950 47.059 68 35 1 25 92 47 113 8.03e-15 64.7
MS.gene003580.t1 MTR_8g026730 45.588 68 34 2 26 91 27 93 1.30e-14 63.9
MS.gene003580.t1 MTR_7g101740 53.125 64 29 1 25 88 39 101 1.99e-14 63.5
MS.gene003580.t1 MTR_4g025830 46.970 66 31 2 26 88 79 143 2.04e-14 64.7
MS.gene003580.t1 MTR_1g094750 53.226 62 28 1 25 86 49 109 3.54e-14 63.2
MS.gene003580.t1 MTR_1g009150 54.839 62 27 1 25 86 70 130 3.78e-14 64.3
MS.gene003580.t1 MTR_0388s0020 43.478 69 35 2 25 90 74 141 4.96e-14 63.5
MS.gene003580.t1 MTR_3g105900 75.000 36 9 0 23 58 1169 1204 6.20e-13 63.2
MS.gene003580.t1 MTR_4g005320 50.820 61 29 1 26 86 70 129 8.55e-13 60.5
MS.gene003580.t1 MTR_1g059770 41.429 70 37 2 26 92 49 117 9.28e-13 59.7
MS.gene003580.t1 MTR_3g109160 50.746 67 32 1 26 92 69 134 2.18e-12 59.7
MS.gene003580.t1 MTR_7g405740 47.541 61 31 1 26 86 67 126 7.06e-12 58.2
MS.gene003580.t1 MTR_3g098970 37.037 81 49 2 13 93 41 119 7.73e-12 57.8
MS.gene003580.t1 MTR_3g097120 45.946 74 31 2 21 86 4 76 3.82e-11 55.1
MS.gene003580.t1 MTR_8g096470 46.667 60 31 1 27 86 47 105 5.95e-11 54.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003580.t1 AT4G38840 58.824 85 34 1 8 91 15 99 7.87e-30 102
MS.gene003580.t1 AT4G34770 65.789 76 24 1 19 92 28 103 5.17e-29 100
MS.gene003580.t1 AT3G03820 55.319 94 36 2 2 92 6 96 6.97e-29 99.8
MS.gene003580.t1 AT3G03840 53.846 91 33 2 11 92 5 95 7.23e-29 99.8
MS.gene003580.t1 AT5G18020 61.644 73 27 1 17 88 15 87 8.22e-29 99.4
MS.gene003580.t1 AT5G18050 57.895 76 31 1 17 91 15 90 1.38e-28 99.0
MS.gene003580.t1 AT5G18060 59.211 76 30 1 17 91 15 90 2.00e-28 98.6
MS.gene003580.t1 AT5G18080 56.471 85 29 2 8 91 13 90 4.76e-28 97.4
MS.gene003580.t1 AT4G38850 56.790 81 30 2 13 88 6 86 8.18e-28 97.1
MS.gene003580.t1 AT2G21200 62.500 72 26 1 20 90 15 86 1.64e-27 96.3
MS.gene003580.t1 AT3G03850 61.250 80 29 1 15 92 14 93 2.65e-27 95.9
MS.gene003580.t1 AT5G18030 55.422 83 33 2 13 91 6 88 5.65e-27 94.7
MS.gene003580.t1 AT5G18010 54.118 85 31 2 8 91 13 90 1.73e-26 93.6
MS.gene003580.t1 AT4G38825 59.722 72 28 1 21 91 18 89 4.35e-26 92.4
MS.gene003580.t1 AT2G21210 57.534 73 29 1 21 91 23 95 1.86e-25 91.3
MS.gene003580.t1 AT4G34780 51.613 93 39 2 4 90 3 95 7.48e-25 90.1
MS.gene003580.t1 AT2G21210 57.534 73 29 1 21 91 90 162 8.15e-25 91.7
MS.gene003580.t1 AT4G34810 59.722 72 24 2 17 83 38 109 9.82e-24 87.4
MS.gene003580.t1 AT4G34800 65.574 61 18 1 26 83 21 81 1.98e-23 85.9
MS.gene003580.t1 AT4G13790 52.113 71 32 1 20 88 19 89 5.13e-23 84.7
MS.gene003580.t1 AT4G38860 50.000 88 40 1 8 91 18 105 5.56e-23 85.1
MS.gene003580.t1 AT3G03830 54.795 73 30 1 19 88 17 89 8.58e-23 84.3
MS.gene003580.t1 AT4G34790 60.000 65 24 1 26 88 39 103 2.81e-22 83.6
MS.gene003580.t1 AT4G34760 50.575 87 36 2 8 88 19 104 3.55e-22 83.2
MS.gene003580.t1 AT1G75580 49.451 91 37 2 8 90 18 107 4.21e-22 83.2
MS.gene003580.t1 AT2G21220 60.000 65 25 1 24 88 38 101 5.72e-22 82.4
MS.gene003580.t1 AT4G36110 49.398 83 39 2 8 88 20 101 1.54e-19 76.3
MS.gene003580.t1 AT2G16580 47.727 88 38 2 8 88 19 105 1.60e-19 76.6
MS.gene003580.t1 AT1G19830 47.423 97 37 3 8 91 18 113 2.23e-19 76.3
MS.gene003580.t1 AT3G43120 51.471 68 32 1 25 92 78 144 4.83e-19 76.6
MS.gene003580.t1 AT5G20810 51.471 68 32 1 25 92 78 144 1.71e-17 72.8
MS.gene003580.t1 AT5G66260 44.186 86 45 2 8 91 14 98 2.15e-17 70.9
MS.gene003580.t1 AT2G18010 53.125 64 29 1 25 88 47 109 5.19e-17 70.1
MS.gene003580.t1 AT5G20810 53.030 66 30 1 25 90 78 142 6.31e-17 72.0
MS.gene003580.t1 AT3G20220 50.000 72 34 2 16 86 37 107 1.23e-16 69.3
MS.gene003580.t1 AT2G46690 44.048 84 42 3 13 92 10 92 1.56e-16 69.3
MS.gene003580.t1 AT3G61900 42.857 84 44 2 11 91 15 97 3.03e-16 68.9
MS.gene003580.t1 AT4G34750 39.241 79 47 1 10 88 21 98 3.96e-16 68.9
MS.gene003580.t1 AT4G34750 39.241 79 47 1 10 88 21 98 3.96e-16 68.9
MS.gene003580.t1 AT1G75590 53.333 60 27 1 25 84 41 99 5.40e-16 68.6
MS.gene003580.t1 AT2G37030 52.308 65 30 1 25 89 48 111 8.23e-16 67.4
MS.gene003580.t1 AT5G10990 51.667 60 28 1 25 84 40 98 1.17e-15 67.8
MS.gene003580.t1 AT1G19840 50.725 69 31 2 19 85 32 99 2.43e-15 67.0
MS.gene003580.t1 AT5G53590 44.444 72 34 2 25 91 45 115 4.70e-14 63.5
MS.gene003580.t1 AT3G51200 47.436 78 35 4 8 83 23 96 7.86e-14 62.0
MS.gene003580.t1 AT3G53250 43.836 73 35 2 17 89 45 111 2.64e-13 61.2
MS.gene003580.t1 AT3G53250 43.836 73 35 2 17 89 76 142 2.76e-13 61.6
MS.gene003580.t1 AT2G45210 45.455 66 32 2 26 88 79 143 4.28e-13 61.2
MS.gene003580.t1 AT4G00880 48.529 68 32 2 26 91 28 94 6.46e-13 60.1
MS.gene003580.t1 AT4G12410 46.875 64 30 2 26 86 76 138 9.27e-13 60.5
MS.gene003580.t1 AT2G24400 47.059 68 35 1 19 86 57 123 1.46e-12 60.5
MS.gene003580.t1 AT4G31320 50.820 61 29 1 26 86 80 139 1.67e-12 60.5
MS.gene003580.t1 AT3G12830 39.241 79 47 1 13 91 37 114 1.79e-12 58.9
MS.gene003580.t1 AT3G60690 45.455 66 32 2 26 88 88 152 3.36e-12 59.3
MS.gene003580.t1 AT1G56150 43.939 66 36 1 26 91 38 102 1.99e-11 55.8
MS.gene003580.t1 AT5G03310 45.205 73 33 3 25 91 38 109 2.01e-11 55.8
MS.gene003580.t1 AT4G22620 42.647 68 35 2 22 86 75 141 3.70e-11 56.2

Find 25 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTGGTTCAAGTATGATA+TGG 0.308404 4.1:-30700249 None:intergenic
CATATAACTTCTTGCTTGAA+TGG 0.323897 4.1:+30700368 MS.gene003580:CDS
ATCAAAAGGGCATCATTTGT+TGG 0.419339 4.1:+30700140 MS.gene003580:CDS
GTTTCCCTGGTATCATCAAA+AGG 0.428658 4.1:+30700126 MS.gene003580:CDS
ACATCTTCGCCACAAGGAAT+GGG 0.431145 4.1:-30700338 None:intergenic
GGTTGGTTCAAGTATGATAT+GGG 0.445606 4.1:-30700248 None:intergenic
GACATCTTCGCCACAAGGAA+TGG 0.460145 4.1:-30700339 None:intergenic
TCAAGCAAGAAGTTATATGC+TGG 0.528561 4.1:-30700364 None:intergenic
GGATATCTTGCAGTGTATGT+TGG 0.530355 4.1:+30700200 MS.gene003580:CDS
TTTCCCTGGTATCATCAAAA+GGG 0.538916 4.1:+30700127 MS.gene003580:CDS
TACACTGCAAGATATCCCTT+TGG 0.539372 4.1:-30700194 None:intergenic
AAAATTGTGGACGTGCCAAA+GGG 0.563213 4.1:+30700179 MS.gene003580:CDS
ATCAGCAAGTCTTGAAACAA+TGG 0.564104 4.1:-30700269 None:intergenic
GGAATGGGGAGGCCACCCAT+TGG 0.568588 4.1:-30700323 None:intergenic
GCATGGATATGATCATCCAA+TGG 0.571869 4.1:+30700307 MS.gene003580:CDS
GCAAGTCTTGAAACAATGGT+TGG 0.573427 4.1:-30700265 None:intergenic
CATGGATATGATCATCCAAT+GGG 0.573610 4.1:+30700308 MS.gene003580:CDS
TGGAAGACATCTTCGCCACA+AGG 0.614387 4.1:-30700344 None:intergenic
GGTGGCCTCCCCATTCCTTG+TGG 0.625214 4.1:+30700329 MS.gene003580:CDS
ATACAAGCTGAGGAAGAGCA+TGG 0.630595 4.1:+30700290 MS.gene003580:CDS
CATCTTCGCCACAAGGAATG+GGG 0.642170 4.1:-30700337 None:intergenic
GGATATGATCATCCAATGGG+TGG 0.655506 4.1:+30700311 MS.gene003580:CDS
GTTGGTTCAAGTATGATATG+GGG 0.673944 4.1:-30700247 None:intergenic
AGACTTGCTGATACAAGCTG+AGG 0.680148 4.1:+30700280 MS.gene003580:CDS
CTTCGCCACAAGGAATGGGG+AGG 0.680657 4.1:-30700334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CATATAACTTCTTGCTTGAA+TGG + chr4.1:30700368-30700387 MS.gene003580:CDS 30.0%
ATCAGCAAGTCTTGAAACAA+TGG - chr4.1:30700272-30700291 None:intergenic 35.0%
CATGGATATGATCATCCAAT+GGG + chr4.1:30700308-30700327 MS.gene003580:CDS 35.0%
TCAAGCAAGAAGTTATATGC+TGG - chr4.1:30700367-30700386 None:intergenic 35.0%
TCGAGCAGTTTCAAAAATTG+TGG + chr4.1:30700166-30700185 MS.gene003580:CDS 35.0%
TTTCCCTGGTATCATCAAAA+GGG + chr4.1:30700127-30700146 MS.gene003580:CDS 35.0%
! GGTTGGTTCAAGTATGATAT+GGG - chr4.1:30700251-30700270 None:intergenic 35.0%
! GTTGGTTCAAGTATGATATG+GGG - chr4.1:30700250-30700269 None:intergenic 35.0%
! TGGTTGGTTCAAGTATGATA+TGG - chr4.1:30700252-30700271 None:intergenic 35.0%
!! ATCAAAAGGGCATCATTTGT+TGG + chr4.1:30700140-30700159 MS.gene003580:CDS 35.0%
AAAAATTGTGGACGTGCCAA+AGG + chr4.1:30700178-30700197 MS.gene003580:CDS 40.0%
AAAATTGTGGACGTGCCAAA+GGG + chr4.1:30700179-30700198 MS.gene003580:CDS 40.0%
GCAAGTCTTGAAACAATGGT+TGG - chr4.1:30700268-30700287 None:intergenic 40.0%
GCATGGATATGATCATCCAA+TGG + chr4.1:30700307-30700326 MS.gene003580:CDS 40.0%
GGATATCTTGCAGTGTATGT+TGG + chr4.1:30700200-30700219 MS.gene003580:CDS 40.0%
GTTTCCCTGGTATCATCAAA+AGG + chr4.1:30700126-30700145 MS.gene003580:CDS 40.0%
TACACTGCAAGATATCCCTT+TGG - chr4.1:30700197-30700216 None:intergenic 40.0%
!! ATGCCCTTTTGATGATACCA+GGG - chr4.1:30700133-30700152 None:intergenic 40.0%
ACATCTTCGCCACAAGGAAT+GGG - chr4.1:30700341-30700360 None:intergenic 45.0%
ATACAAGCTGAGGAAGAGCA+TGG + chr4.1:30700290-30700309 MS.gene003580:CDS 45.0%
GGATATGATCATCCAATGGG+TGG + chr4.1:30700311-30700330 MS.gene003580:CDS 45.0%
!! AGACTTGCTGATACAAGCTG+AGG + chr4.1:30700280-30700299 MS.gene003580:CDS 45.0%
!! GATGCCCTTTTGATGATACC+AGG - chr4.1:30700134-30700153 None:intergenic 45.0%
CATCTTCGCCACAAGGAATG+GGG - chr4.1:30700340-30700359 None:intergenic 50.0%
GACATCTTCGCCACAAGGAA+TGG - chr4.1:30700342-30700361 None:intergenic 50.0%
TGGAAGACATCTTCGCCACA+AGG - chr4.1:30700347-30700366 None:intergenic 50.0%
CTTCGCCACAAGGAATGGGG+AGG - chr4.1:30700337-30700356 None:intergenic 60.0%
GGAATGGGGAGGCCACCCAT+TGG - chr4.1:30700326-30700345 None:intergenic 65.0%
GGTGGCCTCCCCATTCCTTG+TGG + chr4.1:30700329-30700348 MS.gene003580:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 30700116 30700397 30700116 ID=MS.gene003580
chr4.1 mRNA 30700116 30700397 30700116 ID=MS.gene003580.t1;Parent=MS.gene003580
chr4.1 exon 30700116 30700397 30700116 ID=MS.gene003580.t1.exon1;Parent=MS.gene003580.t1
chr4.1 CDS 30700116 30700397 30700116 ID=cds.MS.gene003580.t1;Parent=MS.gene003580.t1
Gene Sequence

>MS.gene003580

ATGGGTTTTCGTTTCCCTGGTATCATCAAAAGGGCATCATTTGTTGGAAATCGAGCAGTTTCAAAAATTGTGGACGTGCCAAAGGGATATCTTGCAGTGTATGTTGGAGAGAAACAAAAGAGATTTGTGATCCCCATATCATACTTGAACCAACCATTGTTTCAAGACTTGCTGATACAAGCTGAGGAAGAGCATGGATATGATCATCCAATGGGTGGCCTCCCCATTCCTTGTGGCGAAGATGTCTTCCAGCATATAACTTCTTGCTTGAATGGACTATGA
Protein sequence

>MS.gene003580.t1

MGFRFPGIIKRASFVGNRAVSKIVDVPKGYLAVYVGEKQKRFVIPISYLNQPLFQDLLIQAEEEHGYDHPMGGLPIPCGEDVFQHITSCLNGL