AlfalfaGEDB | MS.gene003610

M. sativa cultivar XinJiangDaYe / MS.gene003610

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003610.t1	XP_003607123.1	93.5	92	6	0	1	92	1	92	3.00E-40	174.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003610.t1	P33080	67.4	92	30	0	1	92	1	92	6.4e-31	134.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003610.t1	G7JL45	93.5	92	6	0	1	92	1	92	2.2e-40	174.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene003610	MS.gene23371	PPI
MS.gene003610	MS.gene75672	PPI
MS.gene003610	MS.gene50654	PPI
MS.gene003610	MS.gene062974	PPI
MS.gene003610	MS.gene003583	PPI
MS.gene003610	MS.gene062951	PPI
MS.gene003610	MS.gene057801	PPI
MS.gene003610	MS.gene77527	PPI
MS.gene003610	MS.gene77524	PPI
MS.gene003610	MS.gene057795	PPI
MS.gene003610	MS.gene68162	PPI
MS.gene057778	MS.gene003610	PPI
MS.gene003610	MS.gene045363	PPI
MS.gene003610	MS.gene75675	PPI
MS.gene045366	MS.gene003610	PPI
MS.gene003610	MS.gene79887	PPI
MS.gene062963	MS.gene003610	PPI
MS.gene003610	MS.gene50652	PPI
MS.gene003610	MS.gene68761	PPI
MS.gene75674	MS.gene003610	PPI
MS.gene79890	MS.gene003610	PPI
MS.gene003610	MS.gene68165	PPI
MS.gene003615	MS.gene003610	PPI
MS.gene062973	MS.gene003610	PPI
MS.gene003602	MS.gene003610	PPI
MS.gene23372	MS.gene003610	PPI
MS.gene003610	MS.gene50684	PPI
MS.gene003627	MS.gene003610	PPI
MS.gene003610	MS.gene014668	PPI
MS.gene062984	MS.gene003610	PPI
MS.gene003610	MS.gene79886	PPI
MS.gene003610	MS.gene50765	PPI
MS.gene40327	MS.gene003610	PPI
MS.gene045362	MS.gene003610	PPI
MS.gene003610	MS.gene79891	PPI
MS.gene003610	MS.gene045367	PPI
MS.gene003610	MS.gene045364	PPI
MS.gene77523	MS.gene003610	PPI
MS.gene003587	MS.gene003610	PPI
MS.gene003590	MS.gene003610	PPI
MS.gene063112	MS.gene003610	PPI
MS.gene003610	MS.gene014669	PPI
MS.gene003610	MS.gene057808	PPI
MS.gene003610	MS.gene002380	PPI
MS.gene77526	MS.gene003610	PPI
MS.gene047517	MS.gene003610	PPI
MS.gene045360	MS.gene003610	PPI
MS.gene003610	MS.gene68163	PPI
MS.gene003610	MS.gene75315	PPI
MS.gene003610	MS.gene057818	PPI
MS.gene003610	MS.gene68164	PPI
MS.gene75677	MS.gene003610	PPI
MS.gene003610	MS.gene68759	PPI
MS.gene003610	MS.gene79889	PPI
MS.gene003610	MS.gene045368	PPI
MS.gene003625	MS.gene003610	PPI
MS.gene003610	MS.gene031200	PPI
MS.gene003610	MS.gene014222	PPI
MS.gene003610	MS.gene79888	PPI
MS.gene003610	MS.gene75676	PPI
MS.gene045361	MS.gene003610	PPI
MS.gene003610	MS.gene75678	PPI
MS.gene50675	MS.gene003610	PPI
MS.gene003610	MS.gene031199	PPI
MS.gene003591	MS.gene003610	PPI
MS.gene003610	MS.gene50687	PPI
MS.gene003610	MS.gene014223	PPI
MS.gene062979	MS.gene003610	PPI
MS.gene003610	MS.gene79885	PPI
MS.gene062943	MS.gene003610	PPI
MS.gene01358	MS.gene003610	PPI
MS.gene003608	MS.gene003610	PPI
MS.gene003610	MS.gene50764	PPI
MS.gene40326	MS.gene003610	PPI
MS.gene062952	MS.gene003610	PPI
MS.gene50676	MS.gene003610	PPI
MS.gene23370	MS.gene003610	PPI
MS.gene50766	MS.gene003610	PPI
MS.gene77529	MS.gene003610	PPI
MS.gene014667	MS.gene003610	PPI
MS.gene003594	MS.gene003610	PPI
MS.gene50665	MS.gene003610	PPI
MS.gene003610	MS.gene014670	PPI
MS.gene50677	MS.gene003610	PPI
MS.gene003586	MS.gene003610	PPI
MS.gene062988	MS.gene003610	PPI
MS.gene75673	MS.gene003610	PPI
MS.gene003610	MS.gene75314	PPI
MS.gene003610	MS.gene01764	PPI
MS.gene003610	MS.gene75679	PPI
MS.gene50763	MS.gene003610	PPI
MS.gene003610	MS.gene40325	PPI
MS.gene045365	MS.gene003610	PPI
MS.gene50659	MS.gene003610	PPI
MS.gene003610	MS.gene68760	PPI
MS.gene003610	MS.gene031198	PPI
MS.gene75316	MS.gene003610	PPI
MS.gene003610	MS.gene057797	PPI
MS.gene003610	MS.gene003614	PPI
MS.gene057790	MS.gene003610	PPI
MS.gene003610	MS.gene77528	PPI
MS.gene003610	MS.gene014671	PPI
MS.gene003624	MS.gene003610	PPI
MS.gene003610	MS.gene003596	PPI
MS.gene031201	MS.gene003610	PPI
MS.gene003610	MS.gene003577	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003610.t1	MTR_4g072500	93.478	92	6	0	1	92	1	92	2.37e-60	179
MS.gene003610.t1	MTR_4g072530	93.333	90	6	0	1	90	1	90	4.09e-59	176
MS.gene003610.t1	MTR_4g072640	87.912	91	11	0	1	91	1	91	3.02e-56	168
MS.gene003610.t1	MTR_4g072570	78.261	92	20	0	1	92	1	92	6.28e-49	150
MS.gene003610.t1	MTR_4g072310	73.118	93	24	1	1	92	1	93	3.71e-48	148
MS.gene003610.t1	MTR_3g084150	72.826	92	25	0	1	92	1	92	2.96e-47	145
MS.gene003610.t1	MTR_4g072480	76.087	92	22	0	1	92	1	92	4.69e-47	145
MS.gene003610.t1	MTR_4g072230	74.194	93	21	2	1	92	1	91	8.89e-47	144
MS.gene003610.t1	MTR_4g072680	76.087	92	22	0	1	92	1	92	9.89e-47	144
MS.gene003610.t1	MTR_4g072730	75.556	90	22	0	1	90	1	90	1.45e-46	144
MS.gene003610.t1	MTR_4g072880	68.817	93	28	1	1	92	1	93	1.65e-46	144
MS.gene003610.t1	MTR_3g084180	71.739	92	26	0	1	92	1	92	4.26e-46	143
MS.gene003610.t1	MTR_4g072620	73.913	92	24	0	1	92	1	92	6.67e-46	142
MS.gene003610.t1	MTR_8g461410	70.652	92	27	0	1	92	1	92	1.01e-45	142
MS.gene003610.t1	MTR_3g117630	74.713	87	22	0	6	92	6	92	3.42e-45	140
MS.gene003610.t1	MTR_4g072460	73.913	92	24	0	1	92	1	92	5.14e-45	140
MS.gene003610.t1	MTR_4g072860	72.043	93	25	1	1	92	1	93	5.53e-45	140
MS.gene003610.t1	MTR_4g072250	72.043	93	24	2	1	92	1	92	6.40e-45	140
MS.gene003610.t1	MTR_4g072270	68.817	93	28	1	1	92	1	93	1.36e-44	139
MS.gene003610.t1	MTR_4g072240	67.033	91	29	1	1	90	1	91	1.53e-44	139
MS.gene003610.t1	MTR_4g072220	66.667	93	30	1	1	92	1	93	5.60e-44	137
MS.gene003610.t1	MTR_3g084250	69.565	92	28	0	1	92	1	92	9.51e-44	137
MS.gene003610.t1	MTR_4g072300	65.934	91	30	1	1	90	1	91	1.33e-43	136
MS.gene003610.t1	MTR_4g050700	69.892	93	27	1	1	92	1	93	1.66e-43	136
MS.gene003610.t1	MTR_2g012410	69.892	93	27	1	1	92	1	93	1.66e-43	136
MS.gene003610.t1	MTR_3g084240	72.043	93	24	2	1	92	1	92	5.44e-43	135
MS.gene003610.t1	MTR_4g072870	65.934	91	30	1	1	90	1	91	5.71e-43	135
MS.gene003610.t1	MTR_3g110042	71.910	89	25	0	1	89	1	89	1.08e-42	134
MS.gene003610.t1	MTR_3g084170	72.043	93	24	2	1	92	1	92	1.76e-42	134
MS.gene003610.t1	MTR_3g110038	70.968	93	25	2	1	92	1	92	1.86e-42	134
MS.gene003610.t1	MTR_4g072330	71.429	91	22	2	1	90	1	88	3.00e-42	133
MS.gene003610.t1	MTR_4g072370	71.429	91	22	2	1	90	1	88	1.54e-41	131
MS.gene003610.t1	MTR_4g072260	63.441	93	33	1	1	92	1	93	1.94e-41	131
MS.gene003610.t1	MTR_3g110032	67.742	93	29	1	1	92	1	93	3.96e-41	130
MS.gene003610.t1	MTR_4g072850	71.277	94	25	1	1	92	1	94	4.65e-41	130
MS.gene003610.t1	MTR_4g072890	64.835	91	31	1	1	90	1	91	5.91e-41	130
MS.gene003610.t1	MTR_3g084220	70.968	93	25	2	1	92	1	92	1.50e-40	129
MS.gene003610.t1	MTR_3g084190	69.565	92	28	0	1	92	1	92	4.43e-40	127
MS.gene003610.t1	MTR_5g008360	75.949	79	19	0	14	92	5	83	8.56e-40	127
MS.gene003610.t1	MTR_4g072660	68.478	92	24	1	1	92	1	87	1.02e-39	127
MS.gene003610.t1	MTR_8g461420	69.565	92	28	0	1	92	1	92	1.18e-39	127
MS.gene003610.t1	MTR_3g084260	67.033	91	29	1	1	90	1	91	2.82e-39	125
MS.gene003610.t1	MTR_4g072830	71.111	90	22	2	1	89	1	87	3.59e-39	125
MS.gene003610.t1	MTR_3g084210	70.652	92	27	0	1	92	1	92	4.11e-39	125
MS.gene003610.t1	MTR_3g084160	67.391	92	30	0	1	92	1	92	4.20e-39	125
MS.gene003610.t1	MTR_4g072940	76.389	72	17	0	21	92	53	124	6.94e-39	125
MS.gene003610.t1	MTR_4g072740	68.132	91	22	2	1	90	1	85	1.61e-38	123
MS.gene003610.t1	MTR_3g084230	68.478	92	29	0	1	92	1	92	2.65e-38	123
MS.gene003610.t1	MTR_4g072820	68.889	90	23	2	1	90	1	85	2.92e-38	123
MS.gene003610.t1	MTR_4g072580	65.934	91	24	2	1	90	1	85	6.78e-38	122
MS.gene003610.t1	MTR_4g072470	68.132	91	22	2	1	90	1	85	1.03e-37	121
MS.gene003610.t1	MTR_4g072490	64.835	91	25	2	1	90	1	85	1.74e-37	121
MS.gene003610.t1	MTR_5g008370	78.082	73	16	0	18	90	18	90	3.65e-37	122
MS.gene003610.t1	MTR_3g110045	71.111	90	26	0	3	92	62	151	4.05e-37	122
MS.gene003610.t1	MTR_4g072630	65.556	90	27	1	1	90	1	86	7.12e-37	119
MS.gene003610.t1	MTR_4g072540	64.444	90	28	1	1	90	1	86	8.76e-37	119
MS.gene003610.t1	MTR_4g072600	64.835	91	25	2	1	90	1	85	4.99e-36	117
MS.gene003610.t1	MTR_4g072550	76.389	72	17	0	21	92	32	103	5.80e-36	117
MS.gene003610.t1	MTR_4g072610	64.444	90	26	1	1	90	1	84	7.69e-36	117
MS.gene003610.t1	MTR_4g072670	64.444	90	28	1	1	90	1	86	1.03e-35	116
MS.gene003610.t1	MTR_4g072650	64.444	90	26	1	1	90	1	84	2.68e-35	115
MS.gene003610.t1	MTR_4g072720	63.333	90	29	1	1	90	1	86	4.07e-35	115
MS.gene003610.t1	MTR_4g072750	65.882	85	25	2	1	81	1	85	8.24e-35	114
MS.gene003610.t1	MTR_4g072465	61.111	90	31	1	1	90	1	86	2.99e-34	113
MS.gene003610.t1	MTR_4g072590	64.444	90	27	1	1	90	1	85	9.10e-34	111
MS.gene003610.t1	MTR_4g072510	61.111	90	31	1	1	90	1	86	1.27e-33	111
MS.gene003610.t1	MTR_4g072450	62.222	90	29	1	1	90	1	85	7.71e-32	107
MS.gene003610.t1	MTR_4g072380	62.637	91	28	3	1	90	1	86	1.57e-31	106
MS.gene003610.t1	MTR_4g072690	62.222	90	29	1	1	90	1	85	2.21e-31	105
MS.gene003610.t1	MTR_4g072560	53.608	97	37	2	1	89	1	97	4.24e-31	105
MS.gene003610.t1	MTR_4g072290	59.140	93	23	2	1	92	1	79	5.00e-31	104
MS.gene003610.t1	MTR_4g072910	66.176	68	23	0	23	90	33	100	2.48e-30	103
MS.gene003610.t1	MTR_3g084200	67.123	73	22	2	1	72	1	72	1.52e-29	101
MS.gene003610.t1	MTR_4g072980	55.435	92	38	2	1	89	1	92	2.20e-29	100
MS.gene003610.t1	MTR_4g072280	61.333	75	28	1	1	74	1	75	2.41e-29	100
MS.gene003610.t1	MTR_5g008350	60.000	80	25	2	1	79	1	74	9.12e-29	99.0
MS.gene003610.t1	MTR_4g072770	55.556	90	30	1	1	90	1	80	9.33e-29	99.0
MS.gene003610.t1	MTR_3g117640	67.647	68	21	1	24	90	33	100	1.17e-27	97.1
MS.gene003610.t1	MTR_3g110035	62.121	66	25	0	27	92	73	138	3.66e-25	91.7
MS.gene003610.t1	MTR_3g113310	60.606	66	25	1	24	89	41	105	1.68e-24	89.0
MS.gene003610.t1	MTR_6g077850	52.174	69	33	0	22	90	31	99	5.72e-24	87.4
MS.gene003610.t1	MTR_3g117610	64.062	64	22	1	24	87	44	106	7.23e-24	87.4
MS.gene003610.t1	MTR_4g072190	59.091	66	26	1	24	89	35	99	3.48e-22	82.8
MS.gene003610.t1	MTR_4g072930	56.522	69	26	1	26	90	42	110	7.75e-22	82.4
MS.gene003610.t1	MTR_8g461400	50.538	93	18	3	1	92	1	66	9.92e-21	78.2
MS.gene003610.t1	MTR_8g076040	56.250	64	27	1	24	87	40	102	1.25e-19	76.6
MS.gene003610.t1	MTR_5g021820	45.349	86	43	2	7	89	19	103	1.76e-19	76.3
MS.gene003610.t1	MTR_2g043960	45.679	81	42	2	6	85	56	135	3.33e-17	72.0
MS.gene003610.t1	MTR_4g124750	42.045	88	44	3	4	87	46	130	5.19e-17	71.2
MS.gene003610.t1	MTR_7g118010	50.000	68	31	2	25	90	23	89	3.69e-16	67.8
MS.gene003610.t1	MTR_4g072840	42.222	90	22	2	1	90	1	60	6.48e-16	65.9
MS.gene003610.t1	MTR_4g005310	50.000	66	32	1	21	85	58	123	8.42e-16	68.2
MS.gene003610.t1	MTR_1g024085	50.746	67	32	1	16	82	28	93	2.20e-15	67.0
MS.gene003610.t1	MTR_4g025830	45.070	71	35	2	22	89	76	145	3.67e-15	66.6
MS.gene003610.t1	MTR_8g026730	47.059	68	33	2	25	90	27	93	4.29e-15	65.1
MS.gene003610.t1	MTR_3g092220	43.056	72	38	2	21	90	29	99	4.44e-15	65.1
MS.gene003610.t1	MTR_1g094750	41.860	86	45	2	10	91	31	115	1.48e-14	63.9
MS.gene003610.t1	MTR_1g061570	47.619	63	32	1	23	85	17	78	1.89e-14	63.9
MS.gene003610.t1	MTR_4g072160	49.275	69	34	1	17	85	29	96	2.13e-14	64.3
MS.gene003610.t1	MTR_0388s0020	39.773	88	48	3	5	89	56	141	2.46e-14	64.3
MS.gene003610.t1	MTR_8g461210	40.244	82	48	1	4	85	14	94	8.68e-14	62.0
MS.gene003610.t1	MTR_1g009150	48.438	64	32	1	22	85	68	130	4.01e-13	61.6
MS.gene003610.t1	MTR_1g059770	34.247	73	47	1	17	89	41	112	4.90e-12	57.8
MS.gene003610.t1	MTR_7g101740	45.312	64	34	1	24	87	39	101	5.79e-12	57.4
MS.gene003610.t1	MTR_3g097120	40.506	79	38	2	21	91	5	82	5.88e-12	57.0
MS.gene003610.t1	MTR_1g063950	45.000	60	32	1	23	82	46	104	7.25e-12	57.4
MS.gene003610.t1	MTR_4g005320	45.902	61	32	1	25	85	70	129	9.20e-12	57.8
MS.gene003610.t1	MTR_3g105900	64.865	37	13	0	23	59	1170	1206	1.83e-11	58.9
MS.gene003610.t1	MTR_3g109160	41.558	77	44	1	9	85	53	128	2.53e-11	57.0
MS.gene003610.t1	MTR_7g405740	42.623	61	34	1	25	85	67	126	7.24e-11	55.5
MS.gene003610.t1	MTR_8g101520	36.585	82	51	1	10	91	35	115	8.01e-11	55.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003610.t1	AT4G38840	58.140	86	35	1	6	90	14	99	5.54e-32	107
MS.gene003610.t1	AT5G18020	61.333	75	28	1	16	89	15	89	1.47e-30	103
MS.gene003610.t1	AT5G18060	61.842	76	28	1	16	90	15	90	1.77e-30	103
MS.gene003610.t1	AT5G18080	61.333	75	28	1	16	89	15	89	2.81e-30	103
MS.gene003610.t1	AT5G18050	64.000	75	24	2	16	89	17	89	8.13e-30	102
MS.gene003610.t1	AT4G34770	61.905	84	27	2	9	90	22	102	1.22e-29	102
MS.gene003610.t1	AT4G38850	61.644	73	25	1	21	90	17	89	1.27e-29	101
MS.gene003610.t1	AT3G03840	62.500	72	25	1	21	90	23	94	1.57e-29	101
MS.gene003610.t1	AT5G18030	62.857	70	25	1	22	90	19	88	1.71e-29	101
MS.gene003610.t1	AT2G21200	64.286	70	24	1	21	89	17	86	3.37e-29	100
MS.gene003610.t1	AT5G18010	57.895	76	31	1	16	90	15	90	1.67e-28	98.6
MS.gene003610.t1	AT2G21210	61.765	68	24	1	25	90	28	95	3.58e-28	98.2
MS.gene003610.t1	AT4G38825	61.429	70	26	1	22	90	20	89	3.74e-28	97.8
MS.gene003610.t1	AT3G03850	64.789	71	23	1	22	90	22	92	6.41e-28	97.4
MS.gene003610.t1	AT3G03820	60.274	73	26	1	21	90	23	95	8.13e-28	97.1
MS.gene003610.t1	AT2G21210	61.765	68	24	1	25	90	95	162	1.86e-27	98.2
MS.gene003610.t1	AT3G03830	57.534	73	28	1	21	90	20	92	1.54e-26	94.0
MS.gene003610.t1	AT4G34800	54.118	85	32	2	1	82	1	81	6.05e-26	92.4
MS.gene003610.t1	AT4G34810	65.714	70	19	2	25	89	48	117	1.07e-25	92.4
MS.gene003610.t1	AT4G13790	51.163	86	34	3	6	89	12	91	2.29e-24	88.2
MS.gene003610.t1	AT4G34790	63.077	65	22	1	25	87	39	103	2.29e-23	86.3
MS.gene003610.t1	AT4G34780	64.706	68	21	1	25	89	28	95	3.92e-23	85.5
MS.gene003610.t1	AT1G75580	64.615	65	22	1	25	89	44	107	6.06e-23	85.1
MS.gene003610.t1	AT2G21220	59.091	66	26	1	24	89	39	103	1.62e-22	84.0
MS.gene003610.t1	AT4G38860	58.209	67	28	0	24	90	39	105	2.61e-22	83.6
MS.gene003610.t1	AT4G34760	57.576	66	27	1	24	89	42	106	1.88e-21	81.3
MS.gene003610.t1	AT1G19830	58.209	67	26	2	24	89	47	112	1.39e-18	74.3
MS.gene003610.t1	AT4G36110	56.250	64	27	1	24	87	39	101	1.60e-18	73.9
MS.gene003610.t1	AT2G18010	54.688	64	28	1	24	87	47	109	5.94e-18	72.4
MS.gene003610.t1	AT2G16580	53.030	66	30	1	24	89	43	107	6.53e-18	72.4
MS.gene003610.t1	AT3G43120	44.444	72	39	1	14	85	68	138	1.33e-17	72.8
MS.gene003610.t1	AT5G66260	51.515	66	31	1	25	90	34	98	3.35e-17	70.5
MS.gene003610.t1	AT5G20810	50.000	62	30	1	24	85	78	138	4.39e-16	69.3
MS.gene003610.t1	AT3G20220	44.737	76	40	2	14	88	36	110	5.03e-16	67.8
MS.gene003610.t1	AT5G20810	46.377	69	36	1	17	85	71	138	7.91e-16	68.9
MS.gene003610.t1	AT3G60690	47.222	72	34	2	21	89	84	154	9.82e-16	68.2
MS.gene003610.t1	AT3G61900	40.476	84	46	2	10	90	15	97	2.30e-15	66.6
MS.gene003610.t1	AT1G75590	46.575	73	38	1	10	82	27	98	4.10e-15	66.2
MS.gene003610.t1	AT2G46690	40.260	77	42	2	17	90	16	91	6.96e-15	65.1
MS.gene003610.t1	AT2G45210	44.444	72	36	2	21	89	75	145	1.27e-14	65.5
MS.gene003610.t1	AT5G10990	51.667	60	28	1	23	82	39	97	2.56e-14	64.3
MS.gene003610.t1	AT1G19840	45.946	74	39	1	9	82	25	97	4.99e-14	63.5
MS.gene003610.t1	AT4G34750	44.615	65	35	1	23	87	35	98	5.06e-14	63.5
MS.gene003610.t1	AT4G34750	44.615	65	35	1	23	87	35	98	5.06e-14	63.5
MS.gene003610.t1	AT4G00880	46.377	69	34	2	24	90	27	94	1.13e-13	62.0
MS.gene003610.t1	AT5G53590	42.466	73	36	2	24	91	45	116	5.08e-13	60.8
MS.gene003610.t1	AT2G37030	46.032	63	33	1	24	86	48	109	5.31e-13	60.1
MS.gene003610.t1	AT3G51200	48.333	60	29	2	24	82	38	96	5.40e-13	59.7
MS.gene003610.t1	AT4G12410	45.588	68	33	2	25	89	76	142	2.52e-12	59.3
MS.gene003610.t1	AT4G22620	41.667	72	38	2	21	89	75	145	3.25e-12	58.9
MS.gene003610.t1	AT2G36210	38.356	73	45	0	15	87	44	116	5.32e-12	57.8
MS.gene003610.t1	AT4G31320	42.857	77	37	2	9	85	70	139	6.88e-12	58.5
MS.gene003610.t1	AT3G03847	60.465	43	17	0	43	85	88	130	1.38e-11	56.6
MS.gene003610.t1	AT2G24400	44.776	67	36	1	25	91	64	129	2.91e-11	57.0
MS.gene003610.t1	AT3G12830	38.750	80	47	2	10	89	36	113	6.42e-11	55.1
MS.gene003610.t1	AT4G09530	51.064	47	21	1	22	66	25	71	8.14e-11	53.9

Find 18 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTGGTTCAAGTATGATAT+TGG	0.247037	4.1:-30978180	None:intergenic
GTTGGTTCAAGTATGATATT+GGG	0.382183	4.1:-30978179	None:intergenic
TACACTGCAACATAACCCTT+TGG	0.462446	4.1:-30978126	None:intergenic
CCGTTTAAATGTTATTCGAC+GGG	0.490221	4.1:+30978059	MS.gene003610:CDS
GACATCTTCAGTACAATGAA+TGG	0.503224	4.1:-30978271	None:intergenic
GCAATTCTTGAAACAATGGT+TGG	0.506239	4.1:-30978197	None:intergenic
CCCGTCGAATAACATTTAAA+CGG	0.509917	4.1:-30978059	None:intergenic
GGTTATGTTGCAGTGTATGT+TGG	0.510283	4.1:+30978132	MS.gene003610:CDS
TCCGTTTAAATGTTATTCGA+CGG	0.527380	4.1:+30978058	MS.gene003610:CDS
ATTTGGATATGATCATCCCA+TGG	0.576147	4.1:+30978239	MS.gene003610:CDS
AAAATCAGCAGAAGTTCCAA+AGG	0.578786	4.1:+30978110	MS.gene003610:CDS
ATGAATGGTGAGTCCACCCA+TGG	0.584103	4.1:-30978256	None:intergenic
TGTAGCAATTCTTGAAACAA+TGG	0.591172	4.1:-30978201	None:intergenic
AAATCAGCAGAAGTTCCAAA+GGG	0.600409	4.1:+30978111	MS.gene003610:CDS
TTTGGATATGATCATCCCAT+GGG	0.633975	4.1:+30978240	MS.gene003610:CDS
GGATATGATCATCCCATGGG+TGG	0.643553	4.1:+30978243	MS.gene003610:CDS
TGAATGGTGAGTCCACCCAT+GGG	0.727959	4.1:-30978255	None:intergenic
ATGTTGGAGAGAAACAGAAG+CGG	0.743921	4.1:+30978148	MS.gene003610:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATCATATCCAAATTTTTCTT+CGG	-	chr4.1:30978232-30978251	None:intergenic	20.0%
	TCCGTTTAAATGTTATTCGA+CGG	+	chr4.1:30978058-30978077	MS.gene003610:CDS	30.0%
	TGTAGCAATTCTTGAAACAA+TGG	-	chr4.1:30978204-30978223	None:intergenic	30.0%
!	GTTGGTTCAAGTATGATATT+GGG	-	chr4.1:30978182-30978201	None:intergenic	30.0%
	AAAATCAGCAGAAGTTCCAA+AGG	+	chr4.1:30978110-30978129	MS.gene003610:CDS	35.0%
	AAATCAGCAGAAGTTCCAAA+GGG	+	chr4.1:30978111-30978130	MS.gene003610:CDS	35.0%
	ATTTGGATATGATCATCCCA+TGG	+	chr4.1:30978239-30978258	MS.gene003610:CDS	35.0%
	CATCAAGCCGAAGAAAAATT+TGG	+	chr4.1:30978222-30978241	MS.gene003610:CDS	35.0%
	CCCGTCGAATAACATTTAAA+CGG	-	chr4.1:30978062-30978081	None:intergenic	35.0%
	CCGTTTAAATGTTATTCGAC+GGG	+	chr4.1:30978059-30978078	MS.gene003610:CDS	35.0%
	GACATCTTCAGTACAATGAA+TGG	-	chr4.1:30978274-30978293	None:intergenic	35.0%
	GCAATTCTTGAAACAATGGT+TGG	-	chr4.1:30978200-30978219	None:intergenic	35.0%
	TTTGGATATGATCATCCCAT+GGG	+	chr4.1:30978240-30978259	MS.gene003610:CDS	35.0%
!	GGTTGGTTCAAGTATGATAT+TGG	-	chr4.1:30978183-30978202	None:intergenic	35.0%
	ATGTTGGAGAGAAACAGAAG+CGG	+	chr4.1:30978148-30978167	MS.gene003610:CDS	40.0%
	GGTTATGTTGCAGTGTATGT+TGG	+	chr4.1:30978132-30978151	MS.gene003610:CDS	40.0%
	TACACTGCAACATAACCCTT+TGG	-	chr4.1:30978129-30978148	None:intergenic	40.0%
!!!	CTGCTGATTTTAGTGCTGCT+TGG	-	chr4.1:30978101-30978120	None:intergenic	45.0%
	ATGAATGGTGAGTCCACCCA+TGG	-	chr4.1:30978259-30978278	None:intergenic	50.0%
	GGATATGATCATCCCATGGG+TGG	+	chr4.1:30978243-30978262	MS.gene003610:CDS	50.0%
	TGAATGGTGAGTCCACCCAT+GGG	-	chr4.1:30978258-30978277	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	30978051	30978329	30978051	ID=MS.gene003610
chr4.1	mRNA	30978051	30978329	30978051	ID=MS.gene003610.t1;Parent=MS.gene003610
chr4.1	exon	30978051	30978329	30978051	ID=MS.gene003610.t1.exon1;Parent=MS.gene003610.t1
chr4.1	CDS	30978051	30978329	30978051	ID=cds.MS.gene003610.t1;Parent=MS.gene003610.t1

Gene Sequence	>MS.gene003610 ATGGGTTTCCGTTTAAATGTTATTCGACGGGCATCATTCACAGCTAGCCAAGCAGCACTAAAATCAGCAGAAGTTCCAAAGGGTTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTTGTCCCAATATCATACTTGAACCAACCATTGTTTCAAGAATTGCTACATCAAGCCGAAGAAAAATTTGGATATGATCATCCCATGGGTGGACTCACCATTCATTGTACTGAAGATGTCTTTCGACACATAACTTCTCGCTTGAATGAGCTATGA
Protein sequence	>MS.gene003610.t1 MGFRLNVIRRASFTASQAALKSAEVPKGYVAVYVGEKQKRFVVPISYLNQPLFQELLHQAEEKFGYDHPMGGLTIHCTEDVFRHITSRLNEL