AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003623

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003623.t1 MTR_4g072220 96.774 93 3 0 1 93 1 93 1.63e-63 187
MS.gene003623.t1 MTR_4g072240 89.011 91 10 0 1 91 1 91 1.54e-58 174
MS.gene003623.t1 MTR_4g072300 86.813 91 12 0 1 91 1 91 1.54e-57 172
MS.gene003623.t1 MTR_4g072890 89.011 91 10 0 1 91 1 91 2.10e-57 171
MS.gene003623.t1 MTR_4g072260 87.097 93 12 0 1 93 1 93 3.31e-57 171
MS.gene003623.t1 MTR_4g072870 83.516 91 15 0 1 91 1 91 4.38e-53 160
MS.gene003623.t1 MTR_4g072310 67.742 93 30 0 1 93 1 93 4.19e-45 140
MS.gene003623.t1 MTR_4g072500 69.892 93 27 1 1 93 1 92 7.60e-45 140
MS.gene003623.t1 MTR_4g072640 69.565 92 27 1 1 92 1 91 5.92e-44 137
MS.gene003623.t1 MTR_4g072530 68.132 91 28 1 1 91 1 90 4.95e-43 135
MS.gene003623.t1 MTR_4g072570 67.742 93 29 1 1 93 1 92 1.20e-42 134
MS.gene003623.t1 MTR_4g072880 65.591 93 32 0 1 93 1 93 1.27e-42 134
MS.gene003623.t1 MTR_4g072230 66.667 93 29 1 1 93 1 91 1.68e-42 134
MS.gene003623.t1 MTR_4g072280 82.667 75 13 0 1 75 1 75 5.80e-42 132
MS.gene003623.t1 MTR_4g072250 66.667 93 30 1 1 93 1 92 8.33e-42 132
MS.gene003623.t1 MTR_3g084150 67.742 93 29 1 1 93 1 92 9.19e-42 132
MS.gene003623.t1 MTR_3g110038 69.892 93 27 1 1 93 1 92 1.10e-41 132
MS.gene003623.t1 MTR_4g072370 68.132 91 26 1 1 91 1 88 1.48e-41 131
MS.gene003623.t1 MTR_3g084240 67.742 93 29 1 1 93 1 92 2.69e-41 130
MS.gene003623.t1 MTR_4g072480 65.591 93 31 1 1 93 1 92 4.41e-41 130
MS.gene003623.t1 MTR_3g084180 66.667 93 30 1 1 93 1 92 5.38e-41 130
MS.gene003623.t1 MTR_4g072850 70.213 94 27 1 1 93 1 94 5.58e-41 130
MS.gene003623.t1 MTR_3g117630 66.667 90 30 0 4 93 3 92 9.72e-41 129
MS.gene003623.t1 MTR_4g072330 68.132 91 26 1 1 91 1 88 1.19e-40 129
MS.gene003623.t1 MTR_3g084170 67.742 93 29 1 1 93 1 92 1.37e-40 129
MS.gene003623.t1 MTR_4g072730 63.736 91 32 1 1 91 1 90 2.34e-40 128
MS.gene003623.t1 MTR_4g072580 68.132 91 23 1 1 91 1 85 2.46e-40 128
MS.gene003623.t1 MTR_4g072860 64.516 93 33 0 1 93 1 93 2.54e-40 128
MS.gene003623.t1 MTR_8g461410 65.591 93 31 1 1 93 1 92 2.58e-40 128
MS.gene003623.t1 MTR_4g072270 63.441 93 34 0 1 93 1 93 2.75e-40 128
MS.gene003623.t1 MTR_4g050700 65.591 93 32 0 1 93 1 93 7.29e-40 127
MS.gene003623.t1 MTR_2g012410 65.591 93 32 0 1 93 1 93 7.29e-40 127
MS.gene003623.t1 MTR_4g072620 62.366 93 34 1 1 93 1 92 8.43e-40 127
MS.gene003623.t1 MTR_4g072830 68.132 91 26 1 1 91 1 88 8.49e-40 127
MS.gene003623.t1 MTR_3g110032 64.516 93 33 0 1 93 1 93 1.14e-39 127
MS.gene003623.t1 MTR_3g084250 67.742 93 29 1 1 93 1 92 1.90e-39 126
MS.gene003623.t1 MTR_4g072680 62.366 93 34 1 1 93 1 92 2.73e-39 125
MS.gene003623.t1 MTR_4g072740 67.033 91 24 1 1 91 1 85 6.03e-39 124
MS.gene003623.t1 MTR_4g072630 65.934 91 26 1 1 91 1 86 1.01e-38 124
MS.gene003623.t1 MTR_4g072600 67.033 91 24 1 1 91 1 85 1.26e-38 124
MS.gene003623.t1 MTR_3g110042 66.667 90 29 1 1 90 1 89 2.50e-38 123
MS.gene003623.t1 MTR_4g072460 61.290 93 35 1 1 93 1 92 3.43e-38 123
MS.gene003623.t1 MTR_3g084220 64.516 93 32 1 1 93 1 92 5.15e-38 122
MS.gene003623.t1 MTR_4g072610 64.835 91 25 1 1 91 1 84 8.35e-38 122
MS.gene003623.t1 MTR_4g072490 64.835 91 26 1 1 91 1 85 8.95e-38 122
MS.gene003623.t1 MTR_4g072820 65.556 90 25 1 1 90 1 84 1.02e-37 121
MS.gene003623.t1 MTR_4g072940 75.000 72 18 0 22 93 53 124 1.89e-37 122
MS.gene003623.t1 MTR_4g072660 62.366 93 29 1 1 93 1 87 2.46e-37 120
MS.gene003623.t1 MTR_4g072470 63.736 91 27 1 1 91 1 85 1.14e-36 119
MS.gene003623.t1 MTR_3g084260 62.637 91 34 0 1 91 1 91 1.52e-36 119
MS.gene003623.t1 MTR_3g084190 69.892 93 27 1 1 93 1 92 1.74e-36 119
MS.gene003623.t1 MTR_4g072540 63.736 91 28 1 1 91 1 86 3.59e-36 117
MS.gene003623.t1 MTR_4g072650 63.736 91 26 1 1 91 1 84 3.84e-36 117
MS.gene003623.t1 MTR_8g461420 67.742 93 29 1 1 93 1 92 8.72e-36 117
MS.gene003623.t1 MTR_3g084160 67.742 93 29 1 1 93 1 92 1.17e-35 116
MS.gene003623.t1 MTR_3g084210 67.742 93 29 1 1 93 1 92 1.52e-35 116
MS.gene003623.t1 MTR_3g084230 66.667 93 30 1 1 93 1 92 3.71e-35 115
MS.gene003623.t1 MTR_5g008360 67.105 76 25 0 18 93 8 83 5.46e-35 114
MS.gene003623.t1 MTR_4g072670 61.538 91 30 1 1 91 1 86 9.64e-35 114
MS.gene003623.t1 MTR_4g072510 62.637 91 29 1 1 91 1 86 1.20e-34 114
MS.gene003623.t1 MTR_4g072720 61.538 91 30 1 1 91 1 86 2.32e-34 113
MS.gene003623.t1 MTR_3g110045 72.222 72 20 0 22 93 80 151 2.67e-34 115
MS.gene003623.t1 MTR_4g072465 59.341 91 32 1 1 91 1 86 2.92e-34 113
MS.gene003623.t1 MTR_5g008370 76.119 67 16 0 25 91 24 90 3.34e-34 114
MS.gene003623.t1 MTR_4g072550 68.493 73 23 0 21 93 31 103 1.29e-33 112
MS.gene003623.t1 MTR_4g072590 63.736 91 27 1 1 91 1 85 1.91e-33 110
MS.gene003623.t1 MTR_4g072380 63.636 88 27 1 1 88 1 83 7.52e-33 109
MS.gene003623.t1 MTR_5g008350 66.250 80 21 1 1 80 1 74 2.05e-32 108
MS.gene003623.t1 MTR_4g072690 63.736 91 27 1 1 91 1 85 5.35e-32 107
MS.gene003623.t1 MTR_4g072910 68.657 67 21 0 25 91 34 100 1.03e-31 107
MS.gene003623.t1 MTR_4g072450 62.637 91 28 1 1 91 1 85 1.31e-31 106
MS.gene003623.t1 MTR_4g072770 70.769 65 19 0 26 90 15 79 7.81e-31 104
MS.gene003623.t1 MTR_3g084200 67.123 73 23 1 1 73 1 72 2.54e-30 103
MS.gene003623.t1 MTR_4g072980 53.261 92 41 2 1 90 1 92 3.05e-30 103
MS.gene003623.t1 MTR_3g117640 67.164 67 21 1 25 90 33 99 2.50e-29 101
MS.gene003623.t1 MTR_4g072560 65.152 66 22 1 26 90 32 97 3.29e-29 100
MS.gene003623.t1 MTR_4g072930 48.039 102 42 2 1 91 9 110 1.26e-28 99.8
MS.gene003623.t1 MTR_4g072290 51.613 93 31 1 1 93 1 79 1.23e-27 96.3
MS.gene003623.t1 MTR_4g072750 72.881 59 16 0 15 73 16 74 1.39e-27 96.3
MS.gene003623.t1 MTR_3g113310 48.864 88 39 2 8 90 19 105 1.30e-24 89.4
MS.gene003623.t1 MTR_3g110035 63.636 66 24 0 28 93 73 138 1.23e-23 87.8
MS.gene003623.t1 MTR_3g117610 60.938 64 24 1 25 88 44 106 1.40e-23 87.0
MS.gene003623.t1 MTR_6g077850 52.239 67 32 0 25 91 33 99 2.13e-23 85.9
MS.gene003623.t1 MTR_4g072190 51.807 83 36 2 8 90 21 99 2.65e-23 85.9
MS.gene003623.t1 MTR_5g021820 50.000 84 38 2 10 90 21 103 1.35e-21 81.6
MS.gene003623.t1 MTR_8g076040 50.000 84 38 2 8 88 20 102 3.18e-21 80.9
MS.gene003623.t1 MTR_4g124750 48.837 86 42 2 4 88 46 130 1.70e-20 80.1
MS.gene003623.t1 MTR_4g025830 51.389 72 31 2 23 91 76 146 7.07e-20 79.0
MS.gene003623.t1 MTR_2g043960 59.677 62 24 1 25 86 75 135 9.89e-20 78.6
MS.gene003623.t1 MTR_3g092220 42.353 85 46 2 9 91 16 99 2.47e-19 76.3
MS.gene003623.t1 MTR_4g072160 45.783 83 44 1 4 86 15 96 4.65e-19 76.3
MS.gene003623.t1 MTR_7g118010 55.556 63 25 2 26 86 23 84 1.70e-18 73.9
MS.gene003623.t1 MTR_8g461400 46.237 93 23 2 1 93 1 66 2.45e-18 72.4
MS.gene003623.t1 MTR_4g005310 53.968 63 28 1 25 86 61 123 4.97e-18 73.9
MS.gene003623.t1 MTR_0388s0020 42.045 88 46 3 7 91 57 142 6.02e-18 73.6
MS.gene003623.t1 MTR_8g026730 52.381 63 27 2 26 86 27 88 3.57e-17 70.5
MS.gene003623.t1 MTR_4g072840 47.778 90 16 3 1 90 1 59 1.06e-16 67.8
MS.gene003623.t1 MTR_1g024085 45.679 81 32 2 4 84 26 94 2.98e-16 68.9
MS.gene003623.t1 MTR_1g009150 48.571 70 35 1 17 86 62 130 3.10e-16 69.7
MS.gene003623.t1 MTR_1g094750 41.379 87 47 2 9 92 30 115 4.40e-16 67.8
MS.gene003623.t1 MTR_1g061570 51.613 62 29 1 25 86 18 78 1.03e-15 67.0
MS.gene003623.t1 MTR_3g097120 42.683 82 38 2 19 92 2 82 6.13e-15 64.7
MS.gene003623.t1 MTR_4g005320 49.180 61 30 1 26 86 70 129 2.19e-14 64.7
MS.gene003623.t1 MTR_3g109160 45.570 79 42 1 8 86 51 128 3.28e-14 64.3
MS.gene003623.t1 MTR_1g059770 40.789 76 37 2 22 90 38 112 3.70e-14 63.2
MS.gene003623.t1 MTR_7g405740 43.056 72 40 1 12 83 53 123 3.87e-14 63.9
MS.gene003623.t1 MTR_8g461210 48.333 60 30 1 25 84 34 92 8.42e-14 62.0
MS.gene003623.t1 MTR_7g101740 46.875 64 33 1 25 88 39 101 9.46e-14 62.0
MS.gene003623.t1 MTR_1g063950 45.763 59 31 1 25 83 47 104 1.39e-13 61.6
MS.gene003623.t1 MTR_2g066830 40.580 69 39 2 10 78 43 109 4.92e-13 60.8
MS.gene003623.t1 MTR_7g104950 40.323 62 36 1 29 90 53 113 2.58e-12 58.5
MS.gene003623.t1 MTR_8g094980 40.741 81 34 2 25 92 2 81 3.02e-12 57.8
MS.gene003623.t1 MTR_8g101520 43.939 66 36 1 27 92 51 115 4.07e-12 58.5
MS.gene003623.t1 MTR_7g104940 40.323 62 36 1 29 90 53 113 5.83e-12 57.8
MS.gene003623.t1 MTR_8g096440 45.070 71 36 2 13 83 34 101 9.42e-12 57.4
MS.gene003623.t1 MTR_4g021810 45.070 71 36 3 17 86 18 86 1.41e-11 56.2
MS.gene003623.t1 MTR_3g105900 66.667 36 12 0 25 60 1171 1206 2.09e-11 58.5
MS.gene003623.t1 MTR_2g095430 42.424 66 33 2 25 86 44 108 2.23e-11 56.2
MS.gene003623.t1 MTR_7g101890 36.145 83 49 3 6 86 33 113 3.42e-11 55.5
MS.gene003623.t1 MTR_1g063310 38.462 78 45 2 17 92 17 93 7.87e-11 53.9
MS.gene003623.t1 MTR_8g096470 45.614 57 30 1 27 83 47 102 8.59e-11 54.3
MS.gene003623.t1 MTR_3g098970 31.818 88 57 2 8 93 33 119 9.43e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003623.t1 AT2G21210 53.684 95 40 2 1 91 1 95 2.18e-32 108
MS.gene003623.t1 AT4G38840 72.059 68 18 1 25 91 32 99 7.66e-32 107
MS.gene003623.t1 AT2G21210 53.684 95 40 2 1 91 68 162 1.25e-31 108
MS.gene003623.t1 AT5G18080 62.667 75 27 1 17 90 15 89 1.57e-31 106
MS.gene003623.t1 AT4G34770 63.095 84 26 2 10 91 22 102 3.75e-31 105
MS.gene003623.t1 AT5G18020 60.000 75 29 1 17 90 15 89 5.04e-31 105
MS.gene003623.t1 AT3G03820 57.609 92 33 2 2 90 6 94 2.26e-30 103
MS.gene003623.t1 AT5G18060 69.231 65 19 1 27 90 25 89 3.02e-30 103
MS.gene003623.t1 AT5G18050 66.667 66 21 1 26 90 24 89 4.89e-30 102
MS.gene003623.t1 AT5G18010 58.667 75 30 1 17 90 15 89 1.27e-29 101
MS.gene003623.t1 AT5G18030 66.667 66 21 1 26 90 22 87 1.38e-29 101
MS.gene003623.t1 AT2G21200 61.111 72 27 1 20 90 15 86 4.76e-29 100
MS.gene003623.t1 AT4G38825 59.459 74 29 1 18 90 15 88 5.97e-29 99.8
MS.gene003623.t1 AT3G03840 61.972 71 25 1 22 90 23 93 1.15e-28 99.4
MS.gene003623.t1 AT4G38850 63.235 68 22 1 26 90 21 88 1.23e-28 99.0
MS.gene003623.t1 AT3G03850 66.667 66 20 1 27 90 26 91 3.45e-28 98.2
MS.gene003623.t1 AT4G34800 51.685 89 35 2 1 86 1 84 3.17e-27 95.5
MS.gene003623.t1 AT4G34810 51.087 92 39 3 4 90 27 117 9.20e-26 92.8
MS.gene003623.t1 AT4G34790 63.077 65 22 1 26 88 39 103 1.52e-25 91.7
MS.gene003623.t1 AT3G03830 59.420 69 25 1 25 90 23 91 2.85e-25 90.5
MS.gene003623.t1 AT4G13790 50.685 73 34 1 20 90 19 91 5.34e-24 87.4
MS.gene003623.t1 AT4G34780 60.870 69 24 2 26 91 28 96 9.63e-24 87.0
MS.gene003623.t1 AT1G75580 51.111 90 36 2 8 90 19 107 3.45e-23 85.9
MS.gene003623.t1 AT4G38860 50.000 86 40 1 8 90 19 104 1.14e-22 84.3
MS.gene003623.t1 AT2G21220 48.837 86 40 2 8 90 19 103 1.51e-22 84.0
MS.gene003623.t1 AT4G34760 57.576 66 27 1 25 90 42 106 2.20e-22 83.6
MS.gene003623.t1 AT1G19830 56.061 66 28 1 25 90 47 111 9.58e-21 79.7
MS.gene003623.t1 AT3G43120 58.065 62 25 1 25 86 78 138 4.90e-20 79.3
MS.gene003623.t1 AT2G16580 56.061 66 28 1 25 90 43 107 5.81e-20 77.8
MS.gene003623.t1 AT5G20810 58.730 63 25 1 24 86 77 138 1.82e-19 77.8
MS.gene003623.t1 AT4G36110 47.561 82 41 2 8 88 21 101 2.96e-19 75.9
MS.gene003623.t1 AT2G18010 51.389 72 34 1 17 88 39 109 3.34e-19 75.9
MS.gene003623.t1 AT5G20810 58.730 63 25 1 24 86 77 138 4.84e-19 77.4
MS.gene003623.t1 AT5G66260 53.030 66 30 1 26 91 34 98 9.49e-18 71.6
MS.gene003623.t1 AT2G45210 41.558 77 41 2 19 92 72 147 4.35e-17 71.6
MS.gene003623.t1 AT3G20220 52.308 65 29 2 26 89 47 110 1.27e-16 69.3
MS.gene003623.t1 AT1G75590 50.000 72 31 2 13 84 33 99 2.16e-16 69.7
MS.gene003623.t1 AT3G60690 47.059 68 32 2 26 90 88 154 2.18e-16 70.1
MS.gene003623.t1 AT4G12410 49.275 69 31 2 26 91 76 143 2.38e-16 69.7
MS.gene003623.t1 AT2G46690 47.143 70 33 2 18 84 16 84 3.83e-16 68.2
MS.gene003623.t1 AT1G19840 48.000 75 34 2 10 84 29 98 9.65e-16 68.2
MS.gene003623.t1 AT5G10990 51.667 60 28 1 25 84 40 98 1.31e-15 67.4
MS.gene003623.t1 AT4G00880 56.452 62 24 2 25 84 27 87 2.37e-15 66.2
MS.gene003623.t1 AT3G51200 50.794 63 29 2 25 86 38 99 6.08e-15 64.7
MS.gene003623.t1 AT4G22620 39.759 83 46 2 12 91 65 146 6.61e-15 65.9
MS.gene003623.t1 AT4G34750 43.750 64 35 1 25 88 36 98 7.61e-15 65.5
MS.gene003623.t1 AT4G34750 43.750 64 35 1 25 88 36 98 7.61e-15 65.5
MS.gene003623.t1 AT5G53590 42.466 73 36 2 25 92 45 116 7.72e-15 65.5
MS.gene003623.t1 AT2G37030 46.032 63 33 1 25 87 48 109 1.13e-14 64.7
MS.gene003623.t1 AT3G61900 40.909 88 45 3 12 93 16 102 3.41e-14 63.5
MS.gene003623.t1 AT4G09530 41.096 73 40 2 17 86 19 91 1.60e-13 61.2
MS.gene003623.t1 AT3G12830 43.421 76 38 2 15 90 43 113 2.02e-13 61.6
MS.gene003623.t1 AT3G53250 40.541 74 39 2 14 87 41 109 4.53e-13 60.5
MS.gene003623.t1 AT3G53250 42.857 63 32 1 25 87 82 140 6.77e-13 60.8
MS.gene003623.t1 AT3G03847 58.000 50 19 2 34 83 80 127 1.31e-12 59.3
MS.gene003623.t1 AT1G56150 38.667 75 45 1 16 90 28 101 1.54e-12 58.9
MS.gene003623.t1 AT2G24400 46.269 67 35 1 26 92 64 129 1.73e-12 60.1
MS.gene003623.t1 AT3G09870 46.875 64 31 2 25 86 44 106 1.87e-12 58.5
MS.gene003623.t1 AT4G31320 45.455 66 35 1 21 86 75 139 1.92e-12 60.1
MS.gene003623.t1 AT1G16510 41.538 65 37 1 26 90 54 117 1.79e-11 57.0
MS.gene003623.t1 AT2G36210 39.394 66 40 0 25 90 53 118 6.26e-11 55.1

Find 21 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTAGATTCTTGTGTTT+TGG 0.227199 4.1:-31057976 None:intergenic
AATCAAGCAGAAGAAGAATT+TGG 0.271748 4.1:+31058107 MS.gene003623:CDS
AATGAGACGGTTTGTGATTC+CGG 0.276123 4.1:+31058046 MS.gene003623:CDS
TTCTGATAAGCTTTGCTATT+CGG 0.319452 4.1:-31057941 None:intergenic
TCAAGCGAGATGTGAGGTTT+TGG 0.324425 4.1:-31058181 None:intergenic
TAGACTGCAAGATAGCCTTT+TGG 0.407054 4.1:-31058011 None:intergenic
ATTTGGATATGATCATCCTA+TGG 0.456415 4.1:+31058124 MS.gene003623:CDS
GGCTATCTTGCAGTCTATGT+TGG 0.480274 4.1:+31058017 MS.gene003623:CDS
TTTAGTAATTCTTGAAACAA+TGG 0.528370 4.1:-31058086 None:intergenic
GGTTGGTTCAAGTATGATAC+CGG 0.535378 4.1:-31058065 None:intergenic
GTAATTCTTGAAACAATGGT+TGG 0.547064 4.1:-31058082 None:intergenic
TGGAATTCATCCTCACTGCA+AGG 0.572164 4.1:-31058161 None:intergenic
AAGGGATATGAAGTCCCAAA+AGG 0.574049 4.1:+31057996 MS.gene003623:CDS
TTTGGATATGATCATCCTAT+GGG 0.586077 4.1:+31058125 MS.gene003623:CDS
GGATATGATCATCCTATGGG+TGG 0.645721 4.1:+31058128 MS.gene003623:CDS
CAAAACACAAGAATCTACCA+AGG 0.648832 4.1:+31057977 MS.gene003623:CDS
GGAATTGTGAGACCACCCAT+AGG 0.657747 4.1:-31058140 None:intergenic
GTTCACTCAAGCGAGATGTG+AGG 0.677051 4.1:-31058187 None:intergenic
AAAACACAAGAATCTACCAA+GGG 0.683751 4.1:+31057978 MS.gene003623:CDS
ATGTTGGAGATAGAATGAGA+CGG 0.701447 4.1:+31058033 MS.gene003623:CDS
TCTCACAATTCCTTGCAGTG+AGG 0.728110 4.1:+31058151 MS.gene003623:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGTAATTCTTGAAACAA+TGG - chr4.1:31058089-31058108 None:intergenic 20.0%
AAAACACAAGAATCTACCAA+GGG + chr4.1:31057978-31057997 MS.gene003623:CDS 30.0%
AATCAAGCAGAAGAAGAATT+TGG + chr4.1:31058107-31058126 MS.gene003623:CDS 30.0%
ATTTGGATATGATCATCCTA+TGG + chr4.1:31058124-31058143 MS.gene003623:CDS 30.0%
GTAATTCTTGAAACAATGGT+TGG - chr4.1:31058085-31058104 None:intergenic 30.0%
TTTGGATATGATCATCCTAT+GGG + chr4.1:31058125-31058144 MS.gene003623:CDS 30.0%
!! TTCTGATAAGCTTTGCTATT+CGG - chr4.1:31057944-31057963 None:intergenic 30.0%
!!! CTTGTGTTTTGGAAAATGAT+GGG - chr4.1:31057968-31057987 None:intergenic 30.0%
!!! TCTTGTGTTTTGGAAAATGA+TGG - chr4.1:31057969-31057988 None:intergenic 30.0%
ATGTTGGAGATAGAATGAGA+CGG + chr4.1:31058033-31058052 MS.gene003623:CDS 35.0%
CAAAACACAAGAATCTACCA+AGG + chr4.1:31057977-31057996 MS.gene003623:CDS 35.0%
! CTTGGTAGATTCTTGTGTTT+TGG - chr4.1:31057979-31057998 None:intergenic 35.0%
AAGGGATATGAAGTCCCAAA+AGG + chr4.1:31057996-31058015 MS.gene003623:CDS 40.0%
AATGAGACGGTTTGTGATTC+CGG + chr4.1:31058046-31058065 MS.gene003623:CDS 40.0%
! AGACTGCAAGATAGCCTTTT+GGG - chr4.1:31058013-31058032 None:intergenic 40.0%
! GGTTGGTTCAAGTATGATAC+CGG - chr4.1:31058068-31058087 None:intergenic 40.0%
! TAGACTGCAAGATAGCCTTT+TGG - chr4.1:31058014-31058033 None:intergenic 40.0%
!!! TTTTGGGACTTCATATCCCT+TGG - chr4.1:31057997-31058016 None:intergenic 40.0%
GGATATGATCATCCTATGGG+TGG + chr4.1:31058128-31058147 MS.gene003623:CDS 45.0%
GGCTATCTTGCAGTCTATGT+TGG + chr4.1:31058017-31058036 MS.gene003623:CDS 45.0%
TCTCACAATTCCTTGCAGTG+AGG + chr4.1:31058151-31058170 MS.gene003623:CDS 45.0%
TGGAATTCATCCTCACTGCA+AGG - chr4.1:31058164-31058183 None:intergenic 45.0%
! TCAAGCGAGATGTGAGGTTT+TGG - chr4.1:31058184-31058203 None:intergenic 45.0%
GGAATTGTGAGACCACCCAT+AGG - chr4.1:31058143-31058162 None:intergenic 50.0%
GTTCACTCAAGCGAGATGTG+AGG - chr4.1:31058190-31058209 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 31057933 31058214 31057933 ID=MS.gene003623
chr4.1 mRNA 31057933 31058214 31057933 ID=MS.gene003623.t1;Parent=MS.gene003623
chr4.1 exon 31057933 31058214 31057933 ID=MS.gene003623.t1.exon1;Parent=MS.gene003623.t1
chr4.1 CDS 31057933 31058214 31057933 ID=cds.MS.gene003623.t1;Parent=MS.gene003623.t1
Gene Sequence

>MS.gene003623

ATGGGTTTCCGAATAGCAAAGCTTATCAGAATCCCATCATTTTCCAAAACACAAGAATCTACCAAGGGATATGAAGTCCCAAAAGGCTATCTTGCAGTCTATGTTGGAGATAGAATGAGACGGTTTGTGATTCCGGTATCATACTTGAACCAACCATTGTTTCAAGAATTACTAAATCAAGCAGAAGAAGAATTTGGATATGATCATCCTATGGGTGGTCTCACAATTCCTTGCAGTGAGGATGAATTCCAAAACCTCACATCTCGCTTGAGTGAACTGTAA
Protein sequence

>MS.gene003623.t1

MGFRIAKLIRIPSFSKTQESTKGYEVPKGYLAVYVGDRMRRFVIPVSYLNQPLFQELLNQAEEEFGYDHPMGGLTIPCSEDEFQNLTSRLSEL