AlfalfaGEDB | MS.gene003629

M. sativa cultivar XinJiangDaYe / MS.gene003629

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003629.t1	AES89296.1	91.2	91	8	0	1	91	1	91	7.80E-41	176

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003629.t1	P33083	81.1	90	14	2	1	88	1	89	1.6e-34	146.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003629.t1	G7JL21	91.2	91	8	0	1	91	1	91	5.6e-41	176.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene003629	MS.gene003583	PPI
MS.gene003629	MS.gene062951	PPI
MS.gene003629	MS.gene057801	PPI
MS.gene003629	MS.gene77527	PPI
MS.gene003629	MS.gene79891	PPI
MS.gene003629	MS.gene057795	PPI
MS.gene045362	MS.gene003629	PPI
MS.gene003629	MS.gene045367	PPI
MS.gene003629	MS.gene045364	PPI
MS.gene77523	MS.gene003629	PPI
MS.gene003629	MS.gene045363	PPI
MS.gene003629	MS.gene50652	PPI
MS.gene003629	MS.gene002380	PPI
MS.gene003629	MS.gene68165	PPI
MS.gene75674	MS.gene003629	PPI
MS.gene79890	MS.gene003629	PPI
MS.gene003615	MS.gene003629	PPI
MS.gene062973	MS.gene003629	PPI
MS.gene003602	MS.gene003629	PPI
MS.gene047517	MS.gene003629	PPI
MS.gene003627	MS.gene003629	PPI
MS.gene003629	MS.gene75315	PPI
MS.gene062984	MS.gene003629	PPI
MS.gene003629	MS.gene057818	PPI
MS.gene003629	MS.gene68164	PPI
MS.gene40327	MS.gene003629	PPI
MS.gene003629	MS.gene68759	PPI
MS.gene003629	MS.gene031200	PPI
MS.gene003629	MS.gene79888	PPI
MS.gene003629	MS.gene75676	PPI
MS.gene003629	MS.gene50687	PPI
MS.gene003591	MS.gene003629	PPI
MS.gene003587	MS.gene003629	PPI
MS.gene003629	MS.gene014223	PPI
MS.gene003629	MS.gene79885	PPI
MS.gene003590	MS.gene003629	PPI
MS.gene062943	MS.gene003629	PPI
MS.gene063112	MS.gene003629	PPI
MS.gene003629	MS.gene014669	PPI
MS.gene003629	MS.gene057808	PPI
MS.gene003608	MS.gene003629	PPI
MS.gene77526	MS.gene003629	PPI
MS.gene045360	MS.gene003629	PPI
MS.gene003629	MS.gene68163	PPI
MS.gene50766	MS.gene003629	PPI
MS.gene75677	MS.gene003629	PPI
MS.gene003629	MS.gene79889	PPI
MS.gene003629	MS.gene045368	PPI
MS.gene50677	MS.gene003629	PPI
MS.gene003625	MS.gene003629	PPI
MS.gene003629	MS.gene014222	PPI
MS.gene003629	MS.gene75678	PPI
MS.gene003629	MS.gene75314	PPI
MS.gene045361	MS.gene003629	PPI
MS.gene003629	MS.gene01764	PPI
MS.gene003629	MS.gene031199	PPI
MS.gene50675	MS.gene003629	PPI
MS.gene062979	MS.gene003629	PPI
MS.gene01358	MS.gene003629	PPI
MS.gene003629	MS.gene68760	PPI
MS.gene003629	MS.gene031198	PPI
MS.gene003629	MS.gene50764	PPI
MS.gene057790	MS.gene003629	PPI
MS.gene003629	MS.gene77528	PPI
MS.gene40326	MS.gene003629	PPI
MS.gene062952	MS.gene003629	PPI
MS.gene003629	MS.gene003577	PPI
MS.gene003629	MS.gene75672	PPI
MS.gene50676	MS.gene003629	PPI
MS.gene23370	MS.gene003629	PPI
MS.gene003629	MS.gene50654	PPI
MS.gene77529	MS.gene003629	PPI
MS.gene014667	MS.gene003629	PPI
MS.gene003629	MS.gene062974	PPI
MS.gene003594	MS.gene003629	PPI
MS.gene50665	MS.gene003629	PPI
MS.gene003629	MS.gene014670	PPI
MS.gene003629	MS.gene77524	PPI
MS.gene003629	MS.gene68162	PPI
MS.gene003586	MS.gene003629	PPI
MS.gene003629	MS.gene75675	PPI
MS.gene057778	MS.gene003629	PPI
MS.gene062988	MS.gene003629	PPI
MS.gene75673	MS.gene003629	PPI
MS.gene003629	MS.gene79887	PPI
MS.gene045366	MS.gene003629	PPI
MS.gene062963	MS.gene003629	PPI
MS.gene003629	MS.gene75679	PPI
MS.gene003629	MS.gene68761	PPI
MS.gene50763	MS.gene003629	PPI
MS.gene003629	MS.gene40325	PPI
MS.gene045365	MS.gene003629	PPI
MS.gene23372	MS.gene003629	PPI
MS.gene50659	MS.gene003629	PPI
MS.gene003629	MS.gene50684	PPI
MS.gene75316	MS.gene003629	PPI
MS.gene003629	MS.gene057797	PPI
MS.gene003629	MS.gene003614	PPI
MS.gene003629	MS.gene014668	PPI
MS.gene003629	MS.gene79886	PPI
MS.gene003629	MS.gene014671	PPI
MS.gene003629	MS.gene50765	PPI
MS.gene003629	MS.gene003596	PPI
MS.gene003624	MS.gene003629	PPI
MS.gene031201	MS.gene003629	PPI
MS.gene003629	MS.gene23371	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003629.t1	MTR_4g072230	91.209	91	8	0	1	91	1	91	4.47e-59	176
MS.gene003629.t1	MTR_4g072310	86.022	93	11	1	1	91	1	93	9.19e-55	165
MS.gene003629.t1	MTR_4g072270	82.796	93	14	1	1	91	1	93	1.64e-54	164
MS.gene003629.t1	MTR_4g072880	80.645	93	16	1	1	91	1	93	6.43e-53	160
MS.gene003629.t1	MTR_4g072860	82.796	93	14	1	1	91	1	93	7.18e-53	160
MS.gene003629.t1	MTR_4g072250	82.609	92	15	1	1	91	1	92	1.41e-52	159
MS.gene003629.t1	MTR_4g072500	74.194	93	21	2	1	91	1	92	3.73e-48	148
MS.gene003629.t1	MTR_4g072640	75.824	91	19	2	1	89	1	90	4.45e-47	145
MS.gene003629.t1	MTR_4g072480	74.194	93	21	2	1	91	1	92	4.65e-47	145
MS.gene003629.t1	MTR_4g072620	74.194	93	21	2	1	91	1	92	9.81e-47	144
MS.gene003629.t1	MTR_3g084170	75.269	93	20	2	1	91	1	92	5.49e-46	142
MS.gene003629.t1	MTR_4g072530	72.527	91	22	2	1	89	1	90	7.60e-46	142
MS.gene003629.t1	MTR_3g084240	74.194	93	21	2	1	91	1	92	5.15e-45	140
MS.gene003629.t1	MTR_4g050700	70.968	93	25	1	1	91	1	93	9.40e-45	139
MS.gene003629.t1	MTR_2g012410	70.968	93	25	1	1	91	1	93	9.40e-45	139
MS.gene003629.t1	MTR_3g084150	72.043	93	23	2	1	91	1	92	2.10e-44	139
MS.gene003629.t1	MTR_4g072680	70.968	93	24	2	1	91	1	92	4.43e-44	137
MS.gene003629.t1	MTR_4g072730	70.652	92	24	2	1	90	1	91	5.39e-44	137
MS.gene003629.t1	MTR_4g072460	70.968	93	24	2	1	91	1	92	7.33e-44	137
MS.gene003629.t1	MTR_3g084220	72.043	93	23	2	1	91	1	92	1.43e-43	136
MS.gene003629.t1	MTR_3g084180	70.968	93	24	2	1	91	1	92	1.93e-43	136
MS.gene003629.t1	MTR_3g110032	69.892	93	26	1	1	91	1	93	7.16e-43	135
MS.gene003629.t1	MTR_8g461410	68.817	93	26	2	1	91	1	92	9.55e-43	134
MS.gene003629.t1	MTR_4g072570	72.043	93	23	2	1	91	1	92	1.14e-42	134
MS.gene003629.t1	MTR_4g072850	74.468	94	21	2	1	91	1	94	1.35e-42	134
MS.gene003629.t1	MTR_3g110038	69.892	93	25	2	1	91	1	92	2.54e-42	133
MS.gene003629.t1	MTR_3g117630	75.294	85	19	1	4	86	3	87	8.76e-42	132
MS.gene003629.t1	MTR_4g072240	67.033	91	28	1	1	89	1	91	8.79e-42	132
MS.gene003629.t1	MTR_4g072370	73.626	91	19	2	1	89	1	88	1.27e-41	131
MS.gene003629.t1	MTR_4g072220	65.591	93	30	1	1	91	1	93	5.40e-41	130
MS.gene003629.t1	MTR_4g072580	74.444	90	15	2	1	88	1	84	7.17e-41	129
MS.gene003629.t1	MTR_3g084250	67.742	93	27	2	1	91	1	92	9.06e-41	129
MS.gene003629.t1	MTR_4g072870	65.934	91	29	1	1	89	1	91	2.16e-40	128
MS.gene003629.t1	MTR_4g072660	65.591	93	24	2	1	91	1	87	5.34e-40	127
MS.gene003629.t1	MTR_3g110042	71.591	88	22	2	1	86	1	87	5.54e-40	127
MS.gene003629.t1	MTR_4g072600	71.111	90	18	2	1	88	1	84	8.27e-40	127
MS.gene003629.t1	MTR_4g072290	68.132	91	17	1	1	91	1	79	1.10e-39	126
MS.gene003629.t1	MTR_3g084260	65.591	93	30	1	1	91	1	93	1.82e-39	126
MS.gene003629.t1	MTR_4g072300	62.637	91	32	1	1	89	1	91	2.98e-39	125
MS.gene003629.t1	MTR_4g072830	71.111	90	21	2	1	88	1	87	4.89e-39	125
MS.gene003629.t1	MTR_4g072260	62.366	93	33	1	1	91	1	93	1.87e-38	124
MS.gene003629.t1	MTR_4g072740	69.231	91	20	2	1	89	1	85	3.05e-38	123
MS.gene003629.t1	MTR_4g072330	65.934	91	26	2	1	89	1	88	5.71e-38	122
MS.gene003629.t1	MTR_5g008370	68.421	95	21	3	1	90	1	91	7.27e-38	124
MS.gene003629.t1	MTR_4g072490	67.033	91	22	2	1	89	1	85	8.08e-38	122
MS.gene003629.t1	MTR_3g084210	69.892	93	25	2	1	91	1	92	8.60e-38	122
MS.gene003629.t1	MTR_4g072890	62.637	91	32	1	1	89	1	91	9.73e-38	122
MS.gene003629.t1	MTR_4g072940	73.256	86	20	2	3	85	33	118	1.67e-37	122
MS.gene003629.t1	MTR_3g084190	68.817	93	26	2	1	91	1	92	3.62e-37	120
MS.gene003629.t1	MTR_8g461420	70.330	91	24	2	1	89	1	90	8.05e-37	119
MS.gene003629.t1	MTR_4g072610	70.000	90	18	2	1	88	1	83	9.82e-37	119
MS.gene003629.t1	MTR_4g072470	68.889	90	20	2	1	88	1	84	1.72e-36	118
MS.gene003629.t1	MTR_3g084230	70.330	91	24	2	1	89	1	90	2.21e-36	118
MS.gene003629.t1	MTR_5g008360	70.886	79	21	1	15	91	5	83	4.72e-36	117
MS.gene003629.t1	MTR_4g072820	67.391	92	20	3	1	89	1	85	1.68e-35	116
MS.gene003629.t1	MTR_3g084160	65.591	93	29	2	1	91	1	92	2.44e-35	115
MS.gene003629.t1	MTR_4g072650	67.778	90	20	2	1	88	1	83	2.55e-35	115
MS.gene003629.t1	MTR_4g072630	63.736	91	26	2	1	89	1	86	3.32e-35	115
MS.gene003629.t1	MTR_4g072380	66.304	92	22	3	1	89	1	86	3.72e-35	115
MS.gene003629.t1	MTR_4g072465	65.909	88	23	2	1	86	1	83	3.83e-35	115
MS.gene003629.t1	MTR_4g072540	65.934	91	24	2	1	89	1	86	7.23e-35	114
MS.gene003629.t1	MTR_3g110045	70.330	91	24	2	3	91	62	151	1.32e-34	115
MS.gene003629.t1	MTR_4g072590	65.934	91	23	2	1	89	1	85	7.50e-34	112
MS.gene003629.t1	MTR_4g072720	77.143	70	14	1	22	89	17	86	2.31e-33	110
MS.gene003629.t1	MTR_4g072670	64.835	91	25	2	1	89	1	86	3.00e-33	110
MS.gene003629.t1	MTR_4g072560	57.143	98	33	3	1	89	1	98	1.47e-32	108
MS.gene003629.t1	MTR_3g084200	71.233	73	18	2	1	71	1	72	2.50e-32	108
MS.gene003629.t1	MTR_4g072910	60.000	95	28	3	4	89	7	100	2.95e-32	108
MS.gene003629.t1	MTR_4g072550	65.000	80	25	2	15	91	24	103	5.46e-32	107
MS.gene003629.t1	MTR_4g072980	56.250	96	36	3	1	91	1	95	6.57e-32	107
MS.gene003629.t1	MTR_5g008350	67.500	80	18	2	1	78	1	74	7.78e-32	106
MS.gene003629.t1	MTR_4g072510	61.538	91	28	2	1	89	1	86	1.35e-31	106
MS.gene003629.t1	MTR_4g072450	64.444	90	24	2	1	88	1	84	1.92e-30	103
MS.gene003629.t1	MTR_4g072690	62.637	91	26	2	1	89	1	85	3.28e-29	100
MS.gene003629.t1	MTR_4g072770	77.778	63	12	1	26	86	15	77	1.15e-28	98.6
MS.gene003629.t1	MTR_3g117640	65.217	69	21	1	25	90	33	101	3.57e-28	98.2
MS.gene003629.t1	MTR_4g072280	58.667	75	29	1	1	73	1	75	1.98e-26	93.2
MS.gene003629.t1	MTR_8g461400	54.945	91	16	3	1	91	1	66	3.12e-25	89.7
MS.gene003629.t1	MTR_4g072750	62.667	75	23	3	1	71	1	74	3.18e-25	90.1
MS.gene003629.t1	MTR_6g077850	49.425	87	41	2	4	88	13	98	6.90e-25	89.7
MS.gene003629.t1	MTR_3g110035	56.962	79	31	2	15	91	61	138	3.99e-24	89.0
MS.gene003629.t1	MTR_3g113310	57.353	68	26	2	24	89	40	106	7.64e-24	87.4
MS.gene003629.t1	MTR_3g117610	59.701	67	24	2	24	88	43	108	8.20e-23	84.7
MS.gene003629.t1	MTR_4g072190	57.143	70	27	2	22	89	32	100	1.03e-22	84.3
MS.gene003629.t1	MTR_4g072930	50.000	82	35	1	11	86	26	107	6.69e-22	82.4
MS.gene003629.t1	MTR_5g021820	55.224	67	27	2	25	89	39	104	1.25e-20	79.0
MS.gene003629.t1	MTR_8g076040	55.224	67	27	2	25	89	40	105	2.06e-20	78.6
MS.gene003629.t1	MTR_4g072840	48.889	90	15	3	1	89	1	60	1.18e-19	75.5
MS.gene003629.t1	MTR_2g043960	55.224	67	27	2	25	89	75	140	5.80e-19	76.3
MS.gene003629.t1	MTR_4g124750	55.224	67	27	2	25	89	68	133	6.35e-19	76.3
MS.gene003629.t1	MTR_7g118010	47.761	67	30	2	26	88	23	88	1.27e-15	66.2
MS.gene003629.t1	MTR_1g024085	51.429	70	28	3	15	82	29	94	1.77e-15	67.0
MS.gene003629.t1	MTR_3g092220	50.000	66	28	2	21	82	28	92	1.78e-15	66.2
MS.gene003629.t1	MTR_4g025830	46.970	66	29	2	26	86	79	143	2.76e-15	67.0
MS.gene003629.t1	MTR_8g461210	42.045	88	47	3	4	89	14	99	3.15e-15	65.9
MS.gene003629.t1	MTR_0388s0020	42.466	73	36	2	21	88	70	141	9.03e-15	65.5
MS.gene003629.t1	MTR_4g005310	49.296	71	30	3	17	84	56	123	1.81e-14	64.7
MS.gene003629.t1	MTR_1g094750	53.226	62	26	2	25	84	49	109	3.63e-14	62.8
MS.gene003629.t1	MTR_8g026730	43.284	67	33	2	26	88	27	92	4.36e-14	62.4
MS.gene003629.t1	MTR_1g061570	43.529	85	42	3	8	90	4	84	5.84e-14	62.8
MS.gene003629.t1	MTR_1g009150	54.839	62	25	2	25	84	70	130	6.80e-14	63.5
MS.gene003629.t1	MTR_1g063950	42.667	75	40	2	15	87	37	110	2.18e-13	61.2
MS.gene003629.t1	MTR_4g072160	50.769	65	27	3	23	84	34	96	2.96e-13	61.2
MS.gene003629.t1	MTR_1g059770	43.077	65	34	2	27	89	50	113	5.27e-13	60.1
MS.gene003629.t1	MTR_3g109160	39.216	102	40	3	10	90	34	134	6.33e-13	60.8
MS.gene003629.t1	MTR_7g101740	50.000	64	29	2	25	86	39	101	9.31e-13	59.3
MS.gene003629.t1	MTR_4g005320	50.820	61	27	2	26	84	70	129	1.73e-12	59.7
MS.gene003629.t1	MTR_3g097120	43.243	74	31	2	21	84	4	76	8.67e-12	56.6
MS.gene003629.t1	MTR_7g104940	42.857	63	33	2	29	89	53	114	1.12e-11	57.0
MS.gene003629.t1	MTR_7g104950	36.000	75	45	2	17	89	41	114	3.83e-11	55.5
MS.gene003629.t1	MTR_2g095430	42.667	75	34	3	10	76	27	100	5.45e-11	55.1
MS.gene003629.t1	MTR_3g105900	68.293	41	11	1	25	63	1171	1211	5.56e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003629.t1	AT4G38840	63.415	82	27	1	8	86	15	96	1.38e-32	109
MS.gene003629.t1	AT5G18020	67.123	73	21	1	17	86	15	87	7.32e-32	107
MS.gene003629.t1	AT4G34770	61.905	84	28	1	11	90	20	103	2.42e-31	106
MS.gene003629.t1	AT5G18080	63.158	76	25	1	17	89	15	90	4.58e-31	105
MS.gene003629.t1	AT5G18050	61.842	76	26	1	17	89	15	90	1.34e-30	103
MS.gene003629.t1	AT5G18060	64.000	75	24	1	17	88	15	89	1.55e-30	103
MS.gene003629.t1	AT3G03840	64.384	73	22	1	22	90	23	95	1.65e-30	103
MS.gene003629.t1	AT5G18030	66.667	72	21	1	21	89	17	88	3.75e-30	102
MS.gene003629.t1	AT2G21200	66.667	72	21	1	20	88	15	86	5.43e-30	102
MS.gene003629.t1	AT4G38850	58.621	87	21	2	8	89	13	89	5.72e-30	102
MS.gene003629.t1	AT3G03850	72.059	68	15	1	27	90	26	93	6.62e-30	102
MS.gene003629.t1	AT3G03820	55.319	94	34	2	2	90	6	96	1.75e-29	101
MS.gene003629.t1	AT5G18010	60.526	76	27	1	17	89	15	90	2.05e-29	100
MS.gene003629.t1	AT4G38825	66.197	71	21	1	21	88	18	88	3.06e-29	100
MS.gene003629.t1	AT2G21210	63.889	72	22	1	21	88	23	94	7.20e-29	99.8
MS.gene003629.t1	AT2G21210	63.889	72	22	1	21	88	90	161	3.28e-28	100
MS.gene003629.t1	AT4G34810	62.162	74	21	2	15	81	36	109	4.00e-27	95.9
MS.gene003629.t1	AT4G34800	52.326	86	31	2	1	81	1	81	1.93e-26	93.6
MS.gene003629.t1	AT4G34780	52.128	94	37	2	4	89	3	96	5.36e-26	92.8
MS.gene003629.t1	AT3G03830	54.118	85	30	2	11	86	5	89	2.29e-25	90.9
MS.gene003629.t1	AT4G13790	51.351	74	32	1	20	89	19	92	3.80e-24	87.8
MS.gene003629.t1	AT4G34790	60.000	65	22	1	26	86	39	103	1.68e-23	86.7
MS.gene003629.t1	AT4G34760	58.824	68	25	2	24	89	41	107	2.18e-22	83.6
MS.gene003629.t1	AT4G38860	57.353	68	27	1	24	89	38	105	5.21e-22	82.8
MS.gene003629.t1	AT1G75580	58.824	68	25	2	24	89	42	108	5.77e-22	82.8
MS.gene003629.t1	AT2G21220	51.220	82	34	3	10	86	21	101	1.48e-21	81.6
MS.gene003629.t1	AT3G43120	52.941	68	29	2	25	90	78	144	2.61e-19	77.4
MS.gene003629.t1	AT2G16580	52.778	72	31	2	20	89	38	108	6.83e-19	74.7
MS.gene003629.t1	AT5G20810	54.412	68	28	2	25	90	78	144	9.06e-19	75.9
MS.gene003629.t1	AT1G19830	56.944	72	27	3	21	89	43	113	1.12e-18	74.7
MS.gene003629.t1	AT4G36110	53.731	67	28	2	25	89	39	104	2.20e-18	73.6
MS.gene003629.t1	AT5G20810	54.412	68	28	2	25	90	78	144	2.80e-18	75.5
MS.gene003629.t1	AT2G18010	52.239	67	29	2	25	89	47	112	2.43e-17	70.9
MS.gene003629.t1	AT3G20220	53.226	62	25	2	26	84	47	107	1.35e-16	69.3
MS.gene003629.t1	AT2G46690	41.667	84	42	3	13	90	10	92	3.64e-16	68.2
MS.gene003629.t1	AT5G10990	50.000	74	33	3	11	82	27	98	7.99e-16	68.2
MS.gene003629.t1	AT2G45210	45.070	71	33	2	21	86	74	143	3.02e-15	67.0
MS.gene003629.t1	AT3G61900	46.377	69	31	2	25	88	29	96	5.73e-15	65.5
MS.gene003629.t1	AT5G66260	50.000	66	30	2	26	89	34	98	7.05e-15	64.3
MS.gene003629.t1	AT1G75590	44.595	74	38	2	11	82	27	99	7.68e-15	65.5
MS.gene003629.t1	AT3G03847	40.000	80	47	1	3	81	48	127	8.89e-15	65.1
MS.gene003629.t1	AT1G19840	50.000	68	29	3	19	82	32	98	1.05e-14	65.1
MS.gene003629.t1	AT3G51200	53.125	64	26	3	21	81	34	96	1.09e-14	63.9
MS.gene003629.t1	AT5G53590	35.789	95	53	2	1	88	21	114	4.11e-14	63.5
MS.gene003629.t1	AT3G60690	46.970	66	29	2	26	86	88	152	4.24e-14	63.9
MS.gene003629.t1	AT2G37030	49.231	65	30	2	25	87	48	111	4.57e-14	62.8
MS.gene003629.t1	AT4G34750	45.312	64	32	2	25	86	36	98	6.89e-14	63.2
MS.gene003629.t1	AT4G34750	45.312	64	32	2	25	86	36	98	6.89e-14	63.2
MS.gene003629.t1	AT4G00880	40.909	88	44	3	8	88	7	93	2.54e-13	60.8
MS.gene003629.t1	AT4G31320	54.098	61	25	2	26	84	80	139	1.79e-12	60.1
MS.gene003629.t1	AT4G12410	43.750	64	30	2	26	84	76	138	1.92e-12	59.3
MS.gene003629.t1	AT2G36210	40.789	76	43	1	16	89	44	119	3.10e-12	58.5
MS.gene003629.t1	AT2G24400	52.459	61	26	2	26	84	64	123	6.36e-12	58.5
MS.gene003629.t1	AT1G76190	50.000	58	27	2	28	84	23	79	7.66e-12	57.0
MS.gene003629.t1	AT4G22620	39.706	68	35	2	22	84	75	141	1.03e-11	57.8
MS.gene003629.t1	AT3G12830	36.842	76	45	2	16	89	40	114	2.84e-11	55.8
MS.gene003629.t1	AT3G53250	41.538	65	32	2	25	87	51	111	3.00e-11	55.8
MS.gene003629.t1	AT1G20470	46.875	64	32	2	28	90	25	87	3.29e-11	56.2
MS.gene003629.t1	AT3G53250	41.538	65	32	2	25	87	82	142	5.12e-11	55.8

Find 24 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTGGTTCAAGTATGATAT+TGG	0.247037	4.1:+31075149	None:intergenic
AGTAAAGCTGAAGAAGAGTT+TGG	0.322754	4.1:-31075107	MS.gene003629:CDS
GTTGGTTCAAGTATGATATT+GGG	0.382183	4.1:+31075150	None:intergenic
CTCAATAAGTCTTGAAACAA+TGG	0.448732	4.1:+31075128	None:intergenic
CACATAACATCTTGCTTGAA+AGG	0.452058	4.1:-31075029	MS.gene003629:CDS
CCGTGTATGTTGGAGAGAAA+CGG	0.463852	4.1:-31075181	MS.gene003629:CDS
GGATATCTTGCCGTGTATGT+TGG	0.488056	4.1:-31075191	MS.gene003629:CDS
ATAAGTCTTGAAACAATGGT+TGG	0.525954	4.1:+31075132	None:intergenic
GACATCTTCGGTGCAAGGAA+TGG	0.540062	4.1:+31075058	None:intergenic
TTTCCCTGGTATCATCAGAA+AGG	0.541055	4.1:-31075264	MS.gene003629:CDS
TTTGGATATGATCATCCAAT+GGG	0.545525	4.1:-31075089	MS.gene003629:CDS
TACACGGCAAGATATCCCTT+TGG	0.549081	4.1:+31075197	None:intergenic
GGAATGGTGAGGCCACCCAT+TGG	0.562484	4.1:+31075074	None:intergenic
AAAAGCTGTGGACATGCCAA+AGG	0.562774	4.1:-31075213	MS.gene003629:CDS
GATGCCTTTCTGATGATACC+AGG	0.565258	4.1:+31075260	None:intergenic
GTTTGGATATGATCATCCAA+TGG	0.573812	4.1:-31075090	MS.gene003629:CDS
TGAAAGACATCTTCGGTGCA+AGG	0.581063	4.1:+31075053	None:intergenic
CCGTTTCTCTCCAACATACA+CGG	0.600066	4.1:+31075181	None:intergenic
AAAGCTGTGGACATGCCAAA+GGG	0.601702	4.1:-31075212	MS.gene003629:CDS
CCGAACAGTTTCAAAAGCTG+TGG	0.607200	4.1:-31075225	MS.gene003629:CDS
GGATATGATCATCCAATGGG+TGG	0.648071	4.1:-31075086	MS.gene003629:CDS
ATGCCTTTCTGATGATACCA+GGG	0.648151	4.1:+31075261	None:intergenic
TATGTGTTGAAAGACATCTT+CGG	0.670451	4.1:+31075046	None:intergenic
CTTCGGTGCAAGGAATGGTG+AGG	0.671810	4.1:+31075063	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATAAGTCTTGAAACAATGGT+TGG	+	chr4.1:31075168-31075187	None:intergenic	30.0%
	CTCAATAAGTCTTGAAACAA+TGG	+	chr4.1:31075172-31075191	None:intergenic	30.0%
	TATGTGTTGAAAGACATCTT+CGG	+	chr4.1:31075254-31075273	None:intergenic	30.0%
	TTTGGATATGATCATCCAAT+GGG	-	chr4.1:31075208-31075227	MS.gene003629:CDS	30.0%
!	GTTGGTTCAAGTATGATATT+GGG	+	chr4.1:31075150-31075169	None:intergenic	30.0%
	AGTAAAGCTGAAGAAGAGTT+TGG	-	chr4.1:31075190-31075209	MS.gene003629:CDS	35.0%
	CACATAACATCTTGCTTGAA+AGG	-	chr4.1:31075268-31075287	MS.gene003629:CDS	35.0%
	GTTTGGATATGATCATCCAA+TGG	-	chr4.1:31075207-31075226	MS.gene003629:CDS	35.0%
!	GGTTGGTTCAAGTATGATAT+TGG	+	chr4.1:31075151-31075170	None:intergenic	35.0%
	ATGCCTTTCTGATGATACCA+GGG	+	chr4.1:31075039-31075058	None:intergenic	40.0%
	TTTCCCTGGTATCATCAGAA+AGG	-	chr4.1:31075033-31075052	MS.gene003629:CDS	40.0%
!!!	CCACAGCTTTTGAAACTGTT+CGG	+	chr4.1:31075075-31075094	None:intergenic	40.0%
	AAAAGCTGTGGACATGCCAA+AGG	-	chr4.1:31075084-31075103	MS.gene003629:CDS	45.0%
	AAAGCTGTGGACATGCCAAA+GGG	-	chr4.1:31075085-31075104	MS.gene003629:CDS	45.0%
	CCGAACAGTTTCAAAAGCTG+TGG	-	chr4.1:31075072-31075091	MS.gene003629:CDS	45.0%
	CCGTGTATGTTGGAGAGAAA+CGG	-	chr4.1:31075116-31075135	MS.gene003629:CDS	45.0%
	CCGTTTCTCTCCAACATACA+CGG	+	chr4.1:31075119-31075138	None:intergenic	45.0%
	GATGCCTTTCTGATGATACC+AGG	+	chr4.1:31075040-31075059	None:intergenic	45.0%
	GGATATCTTGCCGTGTATGT+TGG	-	chr4.1:31075106-31075125	MS.gene003629:CDS	45.0%
	GGATATGATCATCCAATGGG+TGG	-	chr4.1:31075211-31075230	MS.gene003629:CDS	45.0%
	TACACGGCAAGATATCCCTT+TGG	+	chr4.1:31075103-31075122	None:intergenic	45.0%
!	TGAAAGACATCTTCGGTGCA+AGG	+	chr4.1:31075247-31075266	None:intergenic	45.0%
!	GACATCTTCGGTGCAAGGAA+TGG	+	chr4.1:31075242-31075261	None:intergenic	50.0%
!	CTTCGGTGCAAGGAATGGTG+AGG	+	chr4.1:31075237-31075256	None:intergenic	55.0%
	GGAATGGTGAGGCCACCCAT+TGG	+	chr4.1:31075226-31075245	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	31075022	31075297	31075022	ID=MS.gene003629
chr4.1	mRNA	31075022	31075297	31075022	ID=MS.gene003629.t1;Parent=MS.gene003629
chr4.1	exon	31075022	31075297	31075022	ID=MS.gene003629.t1.exon1;Parent=MS.gene003629.t1
chr4.1	CDS	31075022	31075297	31075022	ID=cds.MS.gene003629.t1;Parent=MS.gene003629.t1

Gene Sequence	>MS.gene003629 ATGGGTTTTCGTTTCCCTGGTATCATCAGAAAGGCATCATTTTCTGCAAACCGAACAGTTTCAAAAGCTGTGGACATGCCAAAGGGATATCTTGCCGTGTATGTTGGAGAGAAACGGTTTGTGATCCCAATATCATACTTGAACCAACCATTGTTTCAAGACTTATTGAGTAAAGCTGAAGAAGAGTTTGGATATGATCATCCAATGGGTGGCCTCACCATTCCTTGCACCGAAGATGTCTTTCAACACATAACATCTTGCTTGAAAGGACTATGA
Protein sequence	>MS.gene003629.t1 MGFRFPGIIRKASFSANRTVSKAVDMPKGYLAVYVGEKRFVIPISYLNQPLFQDLLSKAEEEFGYDHPMGGLTIPCTEDVFQHITSCLKGL