AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003630.t1 MTR_4g072220 91.398 93 8 0 1 93 1 93 5.87e-60 178
MS.gene003630.t1 MTR_4g072890 91.209 91 8 0 1 91 1 91 3.42e-59 176
MS.gene003630.t1 MTR_4g072260 89.247 93 10 0 1 93 1 93 1.57e-58 174
MS.gene003630.t1 MTR_4g072300 86.813 91 12 0 1 91 1 91 1.18e-56 169
MS.gene003630.t1 MTR_4g072240 85.714 91 13 0 1 91 1 91 1.33e-55 167
MS.gene003630.t1 MTR_4g072870 80.220 91 18 0 1 91 1 91 1.62e-51 156
MS.gene003630.t1 MTR_4g072310 64.516 93 33 0 1 93 1 93 3.93e-43 135
MS.gene003630.t1 MTR_3g084240 67.742 93 29 1 1 93 1 92 4.08e-42 133
MS.gene003630.t1 MTR_4g072500 64.516 93 32 1 1 93 1 92 8.24e-42 132
MS.gene003630.t1 MTR_3g084150 65.591 93 31 1 1 93 1 92 1.28e-41 132
MS.gene003630.t1 MTR_4g072370 65.934 91 28 1 1 91 1 88 1.44e-41 131
MS.gene003630.t1 MTR_4g072580 67.033 91 24 1 1 91 1 85 1.77e-41 131
MS.gene003630.t1 MTR_3g110038 69.892 93 27 1 1 93 1 92 1.92e-41 131
MS.gene003630.t1 MTR_3g084170 67.742 93 29 1 1 93 1 92 1.92e-41 131
MS.gene003630.t1 MTR_4g072280 81.333 75 14 0 1 75 1 75 4.66e-41 130
MS.gene003630.t1 MTR_3g110032 64.516 93 33 0 1 93 1 93 5.54e-41 130
MS.gene003630.t1 MTR_3g084180 64.516 93 32 1 1 93 1 92 8.07e-41 129
MS.gene003630.t1 MTR_4g072330 65.934 91 28 1 1 91 1 88 1.44e-40 129
MS.gene003630.t1 MTR_4g072570 64.516 93 32 1 1 93 1 92 1.76e-40 129
MS.gene003630.t1 MTR_4g072530 64.835 91 31 1 1 91 1 90 2.23e-40 128
MS.gene003630.t1 MTR_4g072640 64.835 91 31 1 1 91 1 90 2.73e-40 128
MS.gene003630.t1 MTR_4g072880 61.290 93 36 0 1 93 1 93 2.81e-40 128
MS.gene003630.t1 MTR_4g072230 62.366 93 33 1 1 93 1 91 3.12e-40 128
MS.gene003630.t1 MTR_8g461410 63.441 93 33 1 1 93 1 92 3.91e-40 128
MS.gene003630.t1 MTR_4g072250 63.441 93 33 1 1 93 1 92 4.56e-40 127
MS.gene003630.t1 MTR_4g072630 68.132 91 24 1 1 91 1 86 8.52e-40 127
MS.gene003630.t1 MTR_4g072830 65.934 91 28 1 1 91 1 88 8.59e-40 127
MS.gene003630.t1 MTR_4g050700 63.441 93 34 0 1 93 1 93 9.69e-40 127
MS.gene003630.t1 MTR_2g012410 63.441 93 34 0 1 93 1 93 9.69e-40 127
MS.gene003630.t1 MTR_3g084220 65.591 93 31 1 1 93 1 92 1.24e-39 126
MS.gene003630.t1 MTR_3g084250 65.591 93 31 1 1 93 1 92 1.38e-39 126
MS.gene003630.t1 MTR_4g072860 62.366 93 35 0 1 93 1 93 1.91e-39 126
MS.gene003630.t1 MTR_3g117630 62.222 90 34 0 4 93 3 92 7.32e-39 124
MS.gene003630.t1 MTR_3g110042 66.667 90 29 1 1 90 1 89 9.84e-39 124
MS.gene003630.t1 MTR_4g072600 64.835 91 26 1 1 91 1 85 1.59e-38 124
MS.gene003630.t1 MTR_4g072470 64.835 91 26 1 1 91 1 85 1.93e-38 123
MS.gene003630.t1 MTR_4g072740 64.835 91 26 1 1 91 1 85 2.01e-38 123
MS.gene003630.t1 MTR_4g072490 64.835 91 26 1 1 91 1 85 4.11e-38 122
MS.gene003630.t1 MTR_4g072480 60.215 93 36 1 1 93 1 92 5.10e-38 122
MS.gene003630.t1 MTR_4g072270 60.215 93 37 0 1 93 1 93 5.86e-38 122
MS.gene003630.t1 MTR_4g072680 61.290 93 35 1 1 93 1 92 1.20e-37 121
MS.gene003630.t1 MTR_4g072730 58.696 92 37 1 1 92 1 91 3.11e-37 120
MS.gene003630.t1 MTR_4g072850 64.894 94 32 1 1 93 1 94 3.93e-37 120
MS.gene003630.t1 MTR_4g072620 58.065 93 38 1 1 93 1 92 5.75e-37 120
MS.gene003630.t1 MTR_4g072610 62.637 91 27 1 1 91 1 84 6.64e-37 119
MS.gene003630.t1 MTR_3g084260 60.215 93 37 0 1 93 1 93 7.62e-37 119
MS.gene003630.t1 MTR_4g072820 63.043 92 28 1 1 92 1 86 9.12e-37 119
MS.gene003630.t1 MTR_4g072460 60.215 93 36 1 1 93 1 92 1.63e-36 119
MS.gene003630.t1 MTR_3g084190 69.892 93 27 1 1 93 1 92 2.12e-36 118
MS.gene003630.t1 MTR_3g084210 66.667 93 30 1 1 93 1 92 8.44e-36 117
MS.gene003630.t1 MTR_3g084160 67.742 93 29 1 1 93 1 92 1.19e-35 116
MS.gene003630.t1 MTR_4g072650 62.637 91 27 1 1 91 1 84 1.49e-35 116
MS.gene003630.t1 MTR_8g461420 66.667 93 30 1 1 93 1 92 1.51e-35 116
MS.gene003630.t1 MTR_4g072540 61.538 91 30 1 1 91 1 86 1.76e-35 116
MS.gene003630.t1 MTR_4g072670 61.538 91 30 1 1 91 1 86 2.45e-35 115
MS.gene003630.t1 MTR_4g072510 62.637 91 29 1 1 91 1 86 5.82e-35 114
MS.gene003630.t1 MTR_3g084230 65.591 93 31 1 1 93 1 92 8.25e-35 114
MS.gene003630.t1 MTR_4g072465 59.341 91 32 1 1 91 1 86 9.74e-35 114
MS.gene003630.t1 MTR_4g072660 56.989 93 34 1 1 93 1 87 1.49e-34 114
MS.gene003630.t1 MTR_4g072940 69.444 72 22 0 22 93 53 124 2.56e-34 114
MS.gene003630.t1 MTR_3g110045 70.833 72 21 0 22 93 80 151 4.47e-34 114
MS.gene003630.t1 MTR_4g072720 59.341 91 32 1 1 91 1 86 1.04e-33 111
MS.gene003630.t1 MTR_4g072590 67.073 82 27 0 10 91 4 85 1.77e-33 111
MS.gene003630.t1 MTR_5g008350 67.500 80 20 1 1 80 1 74 2.52e-33 110
MS.gene003630.t1 MTR_4g072450 68.293 82 26 0 10 91 4 85 3.20e-33 110
MS.gene003630.t1 MTR_4g072690 63.736 91 27 1 1 91 1 85 8.12e-33 109
MS.gene003630.t1 MTR_5g008360 63.158 76 28 0 18 93 8 83 1.71e-32 108
MS.gene003630.t1 MTR_4g072380 62.500 88 28 1 1 88 1 83 1.93e-32 108
MS.gene003630.t1 MTR_3g084200 68.493 73 22 1 1 73 1 72 1.02e-31 107
MS.gene003630.t1 MTR_4g072550 64.384 73 26 0 21 93 31 103 2.15e-31 106
MS.gene003630.t1 MTR_5g008370 69.118 68 21 0 25 92 24 91 7.43e-31 106
MS.gene003630.t1 MTR_4g072910 64.179 67 24 0 25 91 34 100 1.38e-30 104
MS.gene003630.t1 MTR_3g117640 66.667 69 22 1 25 92 33 101 1.55e-30 104
MS.gene003630.t1 MTR_4g072980 51.579 95 44 2 1 93 1 95 1.56e-30 103
MS.gene003630.t1 MTR_4g072770 65.672 67 23 0 26 92 15 81 1.06e-29 101
MS.gene003630.t1 MTR_4g072560 60.606 66 25 1 26 90 32 97 1.47e-27 96.7
MS.gene003630.t1 MTR_4g072750 64.000 75 24 2 1 73 1 74 3.73e-27 95.1
MS.gene003630.t1 MTR_4g072930 49.398 83 38 1 14 92 29 111 3.95e-26 93.2
MS.gene003630.t1 MTR_4g072290 47.312 93 35 1 1 93 1 79 7.89e-25 89.0
MS.gene003630.t1 MTR_3g110035 60.606 66 26 0 28 93 73 138 1.70e-23 87.4
MS.gene003630.t1 MTR_3g117610 58.462 65 26 1 24 88 43 106 8.56e-23 84.7
MS.gene003630.t1 MTR_3g113310 53.731 67 30 1 24 90 40 105 1.66e-22 84.0
MS.gene003630.t1 MTR_4g072190 48.193 83 39 2 8 90 21 99 2.17e-21 80.9
MS.gene003630.t1 MTR_6g077850 49.254 67 34 0 25 91 33 99 2.21e-21 80.9
MS.gene003630.t1 MTR_5g021820 48.810 84 39 3 10 90 21 103 1.77e-20 79.0
MS.gene003630.t1 MTR_8g076040 47.619 84 40 2 8 88 20 102 1.67e-19 76.3
MS.gene003630.t1 MTR_8g461400 46.237 93 23 2 1 93 1 66 3.13e-19 74.3
MS.gene003630.t1 MTR_2g043960 61.017 59 22 1 25 83 75 132 3.27e-19 77.0
MS.gene003630.t1 MTR_4g124750 49.383 81 39 2 4 83 46 125 3.94e-19 76.6
MS.gene003630.t1 MTR_4g025830 49.315 73 33 2 23 92 76 147 1.39e-18 75.5
MS.gene003630.t1 MTR_3g092220 45.455 77 39 2 9 83 16 91 1.81e-18 73.9
MS.gene003630.t1 MTR_7g118010 55.556 63 25 2 26 86 23 84 5.04e-18 72.4
MS.gene003630.t1 MTR_4g072160 46.250 80 42 1 4 83 15 93 1.04e-17 72.8
MS.gene003630.t1 MTR_4g005310 46.753 77 34 2 17 86 47 123 1.83e-17 72.4
MS.gene003630.t1 MTR_0388s0020 41.573 89 47 3 7 92 57 143 4.38e-17 71.2
MS.gene003630.t1 MTR_8g026730 48.529 68 32 2 26 91 27 93 8.16e-17 69.7
MS.gene003630.t1 MTR_1g024085 46.250 80 31 2 4 83 26 93 2.70e-16 69.3
MS.gene003630.t1 MTR_4g072840 45.652 92 19 3 1 92 1 61 4.48e-16 66.2
MS.gene003630.t1 MTR_1g094750 43.590 78 39 2 13 86 33 109 5.29e-16 67.8
MS.gene003630.t1 MTR_1g009150 51.613 62 29 1 17 78 62 122 4.01e-15 67.0
MS.gene003630.t1 MTR_1g061570 53.333 60 25 2 25 84 18 74 7.00e-15 65.1
MS.gene003630.t1 MTR_3g097120 41.250 80 38 2 19 90 2 80 7.05e-15 64.7
MS.gene003630.t1 MTR_7g101740 45.588 68 36 1 25 92 39 105 2.88e-14 63.2
MS.gene003630.t1 MTR_1g063950 43.548 62 34 1 25 86 47 107 2.97e-14 63.5
MS.gene003630.t1 MTR_2g066830 42.029 69 38 2 10 78 43 109 4.21e-14 63.5
MS.gene003630.t1 MTR_4g005320 52.830 53 24 1 26 78 70 121 1.34e-13 62.8
MS.gene003630.t1 MTR_8g461210 50.000 54 26 1 25 78 34 86 1.42e-13 61.6
MS.gene003630.t1 MTR_7g405740 40.000 75 44 1 12 86 53 126 2.25e-13 62.0
MS.gene003630.t1 MTR_3g109160 47.887 71 36 1 8 78 51 120 5.92e-13 61.2
MS.gene003630.t1 MTR_1g059770 44.828 58 31 1 26 83 49 105 2.58e-12 58.5
MS.gene003630.t1 MTR_8g094980 38.750 80 35 2 24 90 1 79 4.86e-12 57.4
MS.gene003630.t1 MTR_8g101520 45.312 64 34 1 27 90 51 113 8.57e-12 57.8
MS.gene003630.t1 MTR_3g105900 66.667 36 12 0 25 60 1171 1206 1.19e-11 59.3
MS.gene003630.t1 MTR_8g096440 43.056 72 38 2 13 84 34 102 3.94e-11 55.8
MS.gene003630.t1 MTR_7g104950 41.818 55 31 1 29 83 53 106 6.94e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003630.t1 AT2G21210 52.083 96 42 2 1 92 1 96 3.66e-33 110
MS.gene003630.t1 AT4G38840 72.059 68 18 1 25 91 32 99 5.47e-33 110
MS.gene003630.t1 AT2G21210 52.083 96 42 2 1 92 68 163 1.54e-32 111
MS.gene003630.t1 AT5G18080 62.667 75 27 1 17 90 15 89 1.10e-31 106
MS.gene003630.t1 AT5G18020 60.000 75 29 1 17 90 15 89 2.03e-31 106
MS.gene003630.t1 AT5G18060 69.231 65 19 1 27 90 25 89 1.33e-30 103
MS.gene003630.t1 AT5G18050 66.667 66 21 1 26 90 24 89 1.69e-30 103
MS.gene003630.t1 AT5G18030 66.667 66 21 1 26 90 22 87 6.21e-30 102
MS.gene003630.t1 AT5G18010 58.667 75 30 1 17 90 15 89 9.65e-30 102
MS.gene003630.t1 AT3G03820 55.435 92 35 2 2 90 6 94 1.89e-29 101
MS.gene003630.t1 AT4G38825 59.459 74 29 1 18 90 15 88 2.87e-29 100
MS.gene003630.t1 AT4G34770 67.143 70 21 1 25 92 34 103 3.16e-29 100
MS.gene003630.t1 AT2G21200 59.722 72 28 1 20 90 15 86 5.03e-29 99.8
MS.gene003630.t1 AT4G38850 63.235 68 22 1 26 90 21 88 8.57e-29 99.4
MS.gene003630.t1 AT3G03840 61.972 71 25 1 22 90 23 93 1.70e-28 99.0
MS.gene003630.t1 AT4G34800 51.685 89 35 2 1 86 1 84 7.48e-28 97.1
MS.gene003630.t1 AT4G34810 61.972 71 22 2 25 90 47 117 2.65e-27 96.7
MS.gene003630.t1 AT3G03850 63.636 66 22 1 27 90 26 91 3.29e-27 95.5
MS.gene003630.t1 AT4G34790 68.254 63 18 1 26 86 39 101 9.98e-27 94.7
MS.gene003630.t1 AT3G03830 57.971 69 26 1 25 90 23 91 3.78e-25 90.1
MS.gene003630.t1 AT4G13790 49.315 73 35 1 20 90 19 91 1.50e-24 89.0
MS.gene003630.t1 AT4G34780 56.338 71 28 2 24 91 26 96 4.89e-24 87.8
MS.gene003630.t1 AT4G38860 51.190 84 38 1 8 88 19 102 7.71e-23 84.7
MS.gene003630.t1 AT1G75580 50.000 90 37 2 8 90 19 107 4.07e-22 83.2
MS.gene003630.t1 AT2G21220 46.512 86 42 2 8 90 19 103 5.54e-21 80.1
MS.gene003630.t1 AT4G34760 53.731 67 30 1 24 90 41 106 5.86e-21 80.1
MS.gene003630.t1 AT1G19830 55.224 67 29 1 24 90 46 111 7.10e-20 77.8
MS.gene003630.t1 AT3G43120 59.322 59 23 1 25 83 78 135 8.59e-20 78.6
MS.gene003630.t1 AT5G20810 61.017 59 22 1 25 83 78 135 8.30e-19 76.3
MS.gene003630.t1 AT2G16580 53.846 65 29 1 24 88 42 105 1.25e-18 74.3
MS.gene003630.t1 AT5G20810 61.017 59 22 1 25 83 78 135 2.01e-18 75.9
MS.gene003630.t1 AT2G18010 50.000 72 35 1 17 88 39 109 3.62e-18 73.2
MS.gene003630.t1 AT4G36110 49.315 73 36 1 16 88 30 101 7.05e-18 72.0
MS.gene003630.t1 AT5G66260 54.545 66 29 1 26 91 34 98 1.89e-17 70.9
MS.gene003630.t1 AT2G46690 49.275 69 31 2 18 83 16 83 1.87e-16 68.9
MS.gene003630.t1 AT4G12410 47.887 71 33 2 26 93 76 145 2.92e-16 69.3
MS.gene003630.t1 AT3G51200 53.968 63 27 2 25 86 38 99 4.20e-16 67.8
MS.gene003630.t1 AT2G45210 40.260 77 42 2 19 92 72 147 4.67e-16 68.9
MS.gene003630.t1 AT3G20220 55.932 59 24 2 26 83 47 104 6.00e-16 67.8
MS.gene003630.t1 AT1G75590 49.296 71 31 2 13 83 33 98 1.24e-15 67.8
MS.gene003630.t1 AT2G37030 46.774 62 32 1 25 86 48 108 1.66e-15 66.6
MS.gene003630.t1 AT3G60690 44.286 70 35 2 26 92 88 156 2.18e-15 67.4
MS.gene003630.t1 AT4G00880 57.377 61 23 2 25 83 27 86 3.17e-15 65.9
MS.gene003630.t1 AT5G10990 41.573 89 41 3 10 92 29 112 3.75e-15 66.2
MS.gene003630.t1 AT1G19840 47.297 74 34 2 10 83 29 97 5.68e-15 65.9
MS.gene003630.t1 AT4G22620 39.286 84 47 2 12 92 65 147 1.59e-14 65.1
MS.gene003630.t1 AT3G12830 50.000 64 27 2 15 78 43 101 4.87e-14 63.2
MS.gene003630.t1 AT3G61900 50.000 62 27 2 25 83 29 89 5.66e-14 63.2
MS.gene003630.t1 AT4G34750 43.548 62 34 1 25 86 36 96 9.36e-14 62.8
MS.gene003630.t1 AT4G34750 43.548 62 34 1 25 86 36 96 9.36e-14 62.8
MS.gene003630.t1 AT3G53250 41.096 73 38 2 14 86 41 108 1.09e-13 62.0
MS.gene003630.t1 AT5G53590 40.278 72 37 2 25 91 45 115 1.12e-13 62.4
MS.gene003630.t1 AT3G53250 41.096 73 38 2 14 86 72 139 1.65e-13 62.4
MS.gene003630.t1 AT1G56150 44.444 63 34 1 16 78 28 89 4.34e-13 60.1
MS.gene003630.t1 AT3G03847 56.604 53 21 2 34 86 80 130 6.45e-13 60.1
MS.gene003630.t1 AT4G09530 39.726 73 41 2 17 86 19 91 1.89e-12 58.2
MS.gene003630.t1 AT4G31320 48.276 58 29 1 21 78 75 131 3.08e-12 59.7
MS.gene003630.t1 AT1G16510 49.057 53 26 1 26 78 54 105 7.16e-12 57.8
MS.gene003630.t1 AT2G24400 52.830 53 24 1 26 78 64 115 1.37e-11 57.8

Find 21 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTAGATTCTTGTGTTT+TGG 0.198943 4.1:-31076242 None:intergenic
AATCAATCTGAAGAAGAATT+TGG 0.255440 4.1:+31076373 MS.gene003630:CDS
TTTAGTAATTCTTGAAATAA+TGG 0.257115 4.1:-31076352 None:intergenic
GGTTGGTTCAAGTATGATAC+TGG 0.408482 4.1:-31076331 None:intergenic
TAGACTGCAAGATAGCCTTT+TGG 0.442040 4.1:-31076277 None:intergenic
GTAATTCTTGAAATAATGGT+TGG 0.504955 4.1:-31076348 None:intergenic
GGCTATCTTGCAGTCTACGT+TGG 0.536328 4.1:+31076283 MS.gene003630:CDS
TTTGGATATGATCATCCAAT+GGG 0.541874 4.1:+31076391 MS.gene003630:CDS
ATTTGGATATGATCATCCAA+TGG 0.556875 4.1:+31076390 MS.gene003630:CDS
AAGGGACTTGAAGTCCCAAA+AGG 0.558728 4.1:+31076262 MS.gene003630:CDS
AAGAATTCTTCCTCGCCACA+AGG 0.598793 4.1:-31076427 None:intergenic
TTCTGATAAGCTTTGCTATG+CGG 0.610874 4.1:-31076207 None:intergenic
GGAATTGTGAGACCACCCAT+TGG 0.611158 4.1:-31076406 None:intergenic
TCTACGTTGGAGATCAAATG+AGG 0.626265 4.1:+31076296 MS.gene003630:CDS
CAAAACACAAGAATCTACCA+AGG 0.648832 4.1:+31076243 MS.gene003630:CDS
GGATATGATCATCCAATGGG+TGG 0.655640 4.1:+31076394 MS.gene003630:CDS
TCTCACAATTCCTTGTGGCG+AGG 0.669649 4.1:+31076417 MS.gene003630:CDS
AAAACACAAGAATCTACCAA+GGG 0.681268 4.1:+31076244 MS.gene003630:CDS
GGTGGTCTCACAATTCCTTG+TGG 0.694357 4.1:+31076412 MS.gene003630:CDS
ACGTTGGAGATCAAATGAGG+CGG 0.704375 4.1:+31076299 MS.gene003630:CDS
GCGCACTCAAGCGAGAACTG+AGG 0.739137 4.1:-31076453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGTAATTCTTGAAATAA+TGG - chr4.1:31076355-31076374 None:intergenic 15.0%
! AATCAATCTGAAGAAGAATT+TGG + chr4.1:31076373-31076392 MS.gene003630:CDS 25.0%
! GTAATTCTTGAAATAATGGT+TGG - chr4.1:31076351-31076370 None:intergenic 25.0%
AAAACACAAGAATCTACCAA+GGG + chr4.1:31076244-31076263 MS.gene003630:CDS 30.0%
ATTTGGATATGATCATCCAA+TGG + chr4.1:31076390-31076409 MS.gene003630:CDS 30.0%
TTTGGATATGATCATCCAAT+GGG + chr4.1:31076391-31076410 MS.gene003630:CDS 30.0%
!!! TCTTGTGTTTTGGAAAATGA+TGG - chr4.1:31076235-31076254 None:intergenic 30.0%
CAAAACACAAGAATCTACCA+AGG + chr4.1:31076243-31076262 MS.gene003630:CDS 35.0%
! CTTGGTAGATTCTTGTGTTT+TGG - chr4.1:31076245-31076264 None:intergenic 35.0%
! TTCTGATAAGCTTTGCTATG+CGG - chr4.1:31076210-31076229 None:intergenic 35.0%
TCTACGTTGGAGATCAAATG+AGG + chr4.1:31076296-31076315 MS.gene003630:CDS 40.0%
! AGACTGCAAGATAGCCTTTT+GGG - chr4.1:31076279-31076298 None:intergenic 40.0%
! GGTTGGTTCAAGTATGATAC+TGG - chr4.1:31076334-31076353 None:intergenic 40.0%
! TAGACTGCAAGATAGCCTTT+TGG - chr4.1:31076280-31076299 None:intergenic 40.0%
AAGAATTCTTCCTCGCCACA+AGG - chr4.1:31076430-31076449 None:intergenic 45.0%
AAGGGACTTGAAGTCCCAAA+AGG + chr4.1:31076262-31076281 MS.gene003630:CDS 45.0%
ACGTTGGAGATCAAATGAGG+CGG + chr4.1:31076299-31076318 MS.gene003630:CDS 45.0%
GGATATGATCATCCAATGGG+TGG + chr4.1:31076394-31076413 MS.gene003630:CDS 45.0%
!!! TTTTGGGACTTCAAGTCCCT+TGG - chr4.1:31076263-31076282 None:intergenic 45.0%
GGAATTGTGAGACCACCCAT+TGG - chr4.1:31076409-31076428 None:intergenic 50.0%
GGCTATCTTGCAGTCTACGT+TGG + chr4.1:31076283-31076302 MS.gene003630:CDS 50.0%
GGTGGTCTCACAATTCCTTG+TGG + chr4.1:31076412-31076431 MS.gene003630:CDS 50.0%
TCTCACAATTCCTTGTGGCG+AGG + chr4.1:31076417-31076436 MS.gene003630:CDS 50.0%
GCGCACTCAAGCGAGAACTG+AGG - chr4.1:31076456-31076475 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 31076199 31076480 31076199 ID=MS.gene003630
chr4.1 mRNA 31076199 31076480 31076199 ID=MS.gene003630.t1;Parent=MS.gene003630
chr4.1 exon 31076199 31076480 31076199 ID=MS.gene003630.t1.exon1;Parent=MS.gene003630.t1
chr4.1 CDS 31076199 31076480 31076199 ID=cds.MS.gene003630.t1;Parent=MS.gene003630.t1
Gene Sequence

>MS.gene003630

ATGGGTTTCCGCATAGCAAAGCTTATCAGAATGCCATCATTTTCCAAAACACAAGAATCTACCAAGGGACTTGAAGTCCCAAAAGGCTATCTTGCAGTCTACGTTGGAGATCAAATGAGGCGGTTTGTGATTCCAGTATCATACTTGAACCAACCATTATTTCAAGAATTACTAAATCAATCTGAAGAAGAATTTGGATATGATCATCCAATGGGTGGTCTCACAATTCCTTGTGGCGAGGAAGAATTCTTAAACCTCAGTTCTCGCTTGAGTGCGCTGTAA
Protein sequence

>MS.gene003630.t1

MGFRIAKLIRMPSFSKTQESTKGLEVPKGYLAVYVGDQMRRFVIPVSYLNQPLFQELLNQSEEEFGYDHPMGGLTIPCGEEEFLNLSSRLSAL