AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24080.t1 MTR_1g026550 89.021 337 32 3 1 336 1 333 0.0 556
MS.gene24080.t1 MTR_1g026550 84.681 235 31 3 1 234 1 231 1.69e-120 347
MS.gene24080.t1 MTR_6g011870 44.856 243 119 8 85 325 24 253 7.86e-55 180
MS.gene24080.t1 MTR_6g012080 48.387 217 99 7 109 325 50 253 1.23e-54 180
MS.gene24080.t1 MTR_6g011880 44.444 243 120 8 85 325 24 253 1.67e-54 179
MS.gene24080.t1 MTR_6g012110 48.387 217 99 7 109 325 50 253 2.62e-54 179
MS.gene24080.t1 MTR_6g011890 47.926 217 100 7 109 325 50 253 4.88e-54 178
MS.gene24080.t1 MTR_4g094605 44.309 246 111 8 80 325 35 254 1.05e-53 177
MS.gene24080.t1 MTR_5g097280 49.490 196 83 5 133 325 71 253 1.57e-52 174
MS.gene24080.t1 MTR_2g081090 43.779 217 111 4 109 325 20 225 5.28e-51 169
MS.gene24080.t1 MTR_2g081090 43.779 217 111 4 109 325 47 252 5.60e-51 170
MS.gene24080.t1 MTR_6g060175 47.692 195 88 3 133 327 96 276 1.05e-45 157
MS.gene24080.t1 MTR_6g043600 42.857 217 91 7 109 325 34 217 4.45e-43 149
MS.gene24080.t1 MTR_6g060175 45.128 195 83 4 133 327 96 266 3.77e-38 137
MS.gene24080.t1 MTR_3g101670 40.000 215 91 6 133 332 73 264 6.68e-37 134
MS.gene24080.t1 MTR_6g033320 38.462 195 98 7 133 326 61 234 7.52e-33 122
MS.gene24080.t1 MTR_8g023790 34.135 208 109 4 133 331 78 266 1.50e-32 122
MS.gene24080.t1 MTR_3g435460 37.681 207 97 8 133 331 68 250 7.37e-32 120
MS.gene24080.t1 MTR_2g042720 36.842 209 104 5 133 332 77 266 7.54e-32 120
MS.gene24080.t1 MTR_5g098785 35.556 225 105 8 133 336 72 277 3.64e-31 119
MS.gene24080.t1 MTR_3g435460 37.561 205 96 8 135 331 9 189 4.00e-31 116
MS.gene24080.t1 MTR_5g098780 35.556 225 105 8 133 336 70 275 4.25e-31 118
MS.gene24080.t1 MTR_4g015570 39.227 181 85 7 153 332 132 288 1.18e-27 109
MS.gene24080.t1 MTR_5g098770 53.333 75 35 0 256 330 17 91 1.86e-22 90.5
MS.gene24080.t1 MTR_2g436960 48.684 76 34 2 256 331 29 99 9.14e-18 77.8
MS.gene24080.t1 MTR_3g070340 33.750 160 81 4 153 311 135 270 4.12e-17 80.5
MS.gene24080.t1 MTR_0003s0060 45.333 75 36 2 256 330 22 91 6.62e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24080.t1 AT1G76570 71.287 303 77 4 37 332 28 327 1.61e-157 444
MS.gene24080.t1 AT3G27690 51.020 196 80 5 133 325 72 254 5.76e-55 181
MS.gene24080.t1 AT3G27690 51.020 196 80 5 133 325 104 286 7.26e-55 181
MS.gene24080.t1 AT1G29930 47.005 217 103 7 109 325 51 255 7.87e-54 177
MS.gene24080.t1 AT1G29920 47.005 217 103 7 109 325 51 255 9.05e-54 177
MS.gene24080.t1 AT1G29910 47.005 217 103 7 109 325 51 255 9.05e-54 177
MS.gene24080.t1 AT2G05100 50.000 196 82 5 133 325 71 253 2.87e-53 176
MS.gene24080.t1 AT2G05070 50.000 196 82 5 133 325 71 253 3.76e-53 176
MS.gene24080.t1 AT2G34430 47.005 217 103 7 109 325 50 254 3.95e-53 176
MS.gene24080.t1 AT2G34420 47.005 217 103 7 109 325 49 253 4.56e-53 176
MS.gene24080.t1 AT5G54270 43.318 217 112 4 109 325 48 253 2.59e-51 171
MS.gene24080.t1 AT4G10340 48.731 197 83 4 133 327 87 267 1.59e-44 154
MS.gene24080.t1 AT2G05100 48.889 180 76 5 133 309 71 237 9.25e-42 148
MS.gene24080.t1 AT1G45474 37.615 218 89 5 133 330 61 251 2.57e-37 134
MS.gene24080.t1 AT1G45474 37.615 218 89 5 133 330 61 251 2.57e-37 134
MS.gene24080.t1 AT3G54890 39.726 219 104 8 113 326 38 233 7.40e-36 130
MS.gene24080.t1 AT1G19150 36.190 210 104 5 133 332 80 269 8.36e-33 123
MS.gene24080.t1 AT3G47470 33.588 262 126 10 78 331 30 251 9.17e-32 120
MS.gene24080.t1 AT3G61470 34.135 208 109 4 133 331 67 255 1.50e-31 119
MS.gene24080.t1 AT1G61520 36.000 225 104 8 133 336 68 273 5.81e-31 118
MS.gene24080.t1 AT1G61520 36.000 225 104 8 133 336 68 273 5.81e-31 118
MS.gene24080.t1 AT1G61520 35.874 223 103 8 135 336 15 218 8.09e-30 114
MS.gene24080.t1 AT5G01530 38.333 180 88 6 153 332 133 289 7.32e-27 107
MS.gene24080.t1 AT3G08940 37.222 180 90 6 153 332 130 286 1.03e-25 104
MS.gene24080.t1 AT3G54890 33.641 217 86 7 113 326 38 199 1.33e-22 94.4
MS.gene24080.t1 AT3G54890 38.122 181 85 7 114 290 39 196 1.21e-21 91.7
MS.gene24080.t1 AT2G40100 36.875 160 75 7 153 311 134 268 3.34e-16 77.8
MS.gene24080.t1 AT5G28450 47.368 76 39 1 257 331 96 171 6.15e-16 75.1
MS.gene24080.t1 AT3G54890 37.255 102 55 3 113 212 38 132 8.75e-11 60.5

Find 0 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG + 6094:17062-17081 None:intergenic 10.0%
!! AAAGTGAAAGAAATAAAAAA+TGG - 6094:19805-19824 MS.gene24080:CDS 15.0%
!! TTAATGGTAAATTAAATGAA+AGG + 6094:17387-17406 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG - 6094:17879-17898 MS.gene24080:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG + 6094:18186-18205 None:intergenic 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG - 6094:17880-17899 MS.gene24080:intron 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG - 6094:19391-19410 MS.gene24080:intron 15.0%
!! AAATAAAAAGTTTCAGTAGT+TGG - 6094:19539-19558 MS.gene24080:intron 20.0%
!! AACCAAGTTATTAGATAAAT+AGG - 6094:18855-18874 MS.gene24080:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG + 6094:18774-18793 None:intergenic 20.0%
!! ACCAAGTTATTAGATAAATA+GGG - 6094:18856-18875 MS.gene24080:intron 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG - 6094:18798-18817 MS.gene24080:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - 6094:18057-18076 MS.gene24080:intron 20.0%
!! ATAACATAACATAACCATAA+TGG + 6094:17314-17333 None:intergenic 20.0%
!! CAATTAATAAAGTGCAATAA+TGG + 6094:19005-19024 None:intergenic 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG - 6094:18799-18818 MS.gene24080:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG - 6094:18800-18819 MS.gene24080:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG - 6094:19570-19589 MS.gene24080:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG - 6094:18609-18628 MS.gene24080:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG - 6094:18152-18171 MS.gene24080:intron 20.0%
! AAAAAATTCCTTATTCATGC+CGG + 6094:17870-17889 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG + 6094:17579-17598 None:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG + 6094:18965-18984 None:intergenic 25.0%
! ACGGTAATATTATTTAAGAG+TGG + 6094:18375-18394 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - 6094:17848-17867 MS.gene24080:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG - 6094:19513-19532 MS.gene24080:CDS 25.0%
! GAAAATGTTTAAGGAATGAT+AGG + 6094:17126-17145 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG - 6094:18770-18789 MS.gene24080:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG + 6094:19575-19594 None:intergenic 25.0%
! TAAGTTTCAAACCTGTTATA+TGG - 6094:18281-18300 MS.gene24080:intron 25.0%
! TCCCTATTTATCTAATAACT+TGG + 6094:18860-18879 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG + 6094:18101-18120 None:intergenic 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG + 6094:17631-17650 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG - 6094:17622-17641 MS.gene24080:intron 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG - 6094:19088-19107 MS.gene24080:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG - 6094:19397-19416 MS.gene24080:intron 25.0%
ACAAAACTCCTCTAAATTCA+AGG - 6094:16999-17018 MS.gene24080:CDS 30.0%
ACATAGATGCCAAATATCAT+CGG - 6094:17988-18007 MS.gene24080:intron 30.0%
ACATCATCACTAACATCATA+TGG + 6094:19355-19374 None:intergenic 30.0%
AGAAATAAAAAATGGACGCT+TGG - 6094:19813-19832 MS.gene24080:CDS 30.0%
AGCTAAATTTATTCTCATGC+AGG + 6094:19049-19068 None:intergenic 30.0%
AGCTACTGTTACTACTAATT+TGG - 6094:19620-19639 MS.gene24080:intron 30.0%
ATAACATAACCATAATGGCT+TGG + 6094:17309-17328 None:intergenic 30.0%
CATCATCACTAACATCATAT+GGG + 6094:19354-19373 None:intergenic 30.0%
CATCTTGTAATGAGAAAGAA+AGG + 6094:17928-17947 None:intergenic 30.0%
CCAAAAGCTGAAAATGTTTA+AGG + 6094:17135-17154 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG + 6094:17624-17643 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG + 6094:18445-18464 None:intergenic 30.0%
GAATTATTGGTATAGGGATA+AGG + 6094:18966-18985 None:intergenic 30.0%
GATCTTATCATAAAACAGGT+TGG - 6094:19643-19662 MS.gene24080:intron 30.0%
GCCAAAGAATTATTGGTATA+GGG + 6094:18972-18991 None:intergenic 30.0%
GCTACTGTTACTACTAATTT+GGG - 6094:19621-19640 MS.gene24080:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG - 6094:19512-19531 MS.gene24080:CDS 30.0%
TAACATAACCATAATGGCTT+GGG + 6094:17308-17327 None:intergenic 30.0%
TACAAATCGAACATTTCTCA+TGG - 6094:19442-19461 MS.gene24080:CDS 30.0%
TAGATAAATAGGGATGCTAA+AGG - 6094:18866-18885 MS.gene24080:intron 30.0%
TCCCTATACCAATAATTCTT+TGG - 6094:18968-18987 MS.gene24080:intron 30.0%
TGCAATATCTCAAAGCTTAA+TGG + 6094:17403-17422 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG + 6094:18973-18992 None:intergenic 30.0%
TTGGGATCTTATCATAAAAC+AGG - 6094:19639-19658 MS.gene24080:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG - 6094:18285-18304 MS.gene24080:intron 30.0%
! AAACATACGAAAGCATATCA+CGG + 6094:18394-18413 None:intergenic 30.0%
! AACATTTTCAGCTTTTGGTA+TGG - 6094:17137-17156 MS.gene24080:intron 30.0%
! ATATGATGTTAGTGATGATG+TGG - 6094:19354-19373 MS.gene24080:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG - 6094:18223-18242 MS.gene24080:intron 30.0%
! CATGAGAATAAATTTAGCTC+AGG - 6094:19050-19069 MS.gene24080:intron 30.0%
! CCATTTTCCACTAATTAGAA+AGG - 6094:17621-17640 MS.gene24080:intron 30.0%
! CCTTAAACATTTTCAGCTTT+TGG - 6094:17132-17151 MS.gene24080:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG - 6094:18224-18243 MS.gene24080:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG - 6094:19407-19426 MS.gene24080:CDS 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG + 6094:18979-18998 None:intergenic 30.0%
AAACAAGATGAAGAAGAGGA+AGG + 6094:16766-16785 None:intergenic 35.0%
AAAGTTTACCGGCATGAATA+AGG - 6094:17859-17878 MS.gene24080:intron 35.0%
AACGAAACAAGATGAAGAAG+AGG + 6094:16770-16789 None:intergenic 35.0%
AAGTCCCACATTGGAAATAT+AGG + 6094:18129-18148 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG + 6094:18514-18533 None:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG - 6094:18066-18085 MS.gene24080:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG - 6094:18121-18140 MS.gene24080:intron 35.0%
AGGATCTTTGGACAGATTTA+AGG + 6094:19767-19786 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG + 6094:19293-19312 None:intergenic 35.0%
ATAGATGCCAAATATCATCG+GGG - 6094:17990-18009 MS.gene24080:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG - 6094:18129-18148 MS.gene24080:intron 35.0%
CATAGATGCCAAATATCATC+GGG - 6094:17989-18008 MS.gene24080:intron 35.0%
CATATTTCCCCGATGATATT+TGG + 6094:18000-18019 None:intergenic 35.0%
CCTCTTTATAAGACTTAGAG+TGG + 6094:18446-18465 None:intergenic 35.0%
CCTGAGTTATTAGACCTATT+GGG - 6094:17463-17482 MS.gene24080:CDS 35.0%
CTACCCATCATATCTCATTT+GGG - 6094:17202-17221 MS.gene24080:intron 35.0%
CTATAGCTAACAGTCCATTA+GGG - 6094:16932-16951 MS.gene24080:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG - 6094:17822-17841 MS.gene24080:intron 35.0%
CTTATCAGTTAGTTATGCAG+TGG + 6094:18037-18056 None:intergenic 35.0%
GAGTCCTATATTTCCAATGT+GGG - 6094:18122-18141 MS.gene24080:intron 35.0%
GGAGTCACTTCAAAGAAAAA+TGG - 6094:16954-16973 MS.gene24080:CDS 35.0%
GGATCTTTGGACAGATTTAA+GGG + 6094:19766-19785 None:intergenic 35.0%
GTAGTACCGTTGACAAATAT+TGG + 6094:18161-18180 None:intergenic 35.0%
GTATCAAGCTTAAGCTACAA+GGG - 6094:18743-18762 MS.gene24080:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG - 6094:18807-18826 MS.gene24080:intron 35.0%
GTTTCAAACCTGTTATATGG+TGG - 6094:18284-18303 MS.gene24080:intron 35.0%
TACCCATCATATCTCATTTG+GGG - 6094:17203-17222 MS.gene24080:intron 35.0%
TATAGCTAACAGTCCATTAG+GGG - 6094:16933-16952 MS.gene24080:CDS 35.0%
TATATTTCCAATGTGGGACT+TGG - 6094:18128-18147 MS.gene24080:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG - 6094:18744-18763 MS.gene24080:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG - 6094:19239-19258 MS.gene24080:CDS 35.0%
TCCTGAGTTATTAGACCTAT+TGG - 6094:17462-17481 MS.gene24080:CDS 35.0%
TCGACAACACTACATAGAAT+TGG - 6094:18349-18368 MS.gene24080:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG - 6094:17821-17840 MS.gene24080:intron 35.0%
TGGATACAAGCATTACCATA+AGG + 6094:19257-19276 None:intergenic 35.0%
TGGGAGATGCAAATATAACA+TGG - 6094:17899-17918 MS.gene24080:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG - 6094:18742-18761 MS.gene24080:intron 35.0%
TTCAAAAGCTTCAGGATCTT+TGG + 6094:19779-19798 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG - 6094:18286-18305 MS.gene24080:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG - 6094:17491-17510 MS.gene24080:CDS 35.0%
TTCCCCAAATGAGATATGAT+GGG + 6094:17208-17227 None:intergenic 35.0%
! AAATATTTCTGCAGTTCCAC+TGG + 6094:17276-17295 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG - 6094:18443-18462 MS.gene24080:intron 35.0%
! CTTAGTGGTATTGGATGTAT+TGG - 6094:19406-19425 MS.gene24080:CDS 35.0%
! GTTCGATTTGTAGAATCGAA+AGG + 6094:19434-19453 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG - 6094:16772-16791 MS.gene24080:CDS 35.0%
! TGATCCACAATGTTTTGTAC+AGG + 6094:19892-19911 None:intergenic 35.0%
! TGTTATATGGTGGGGAAAAA+GGG - 6094:18294-18313 MS.gene24080:intron 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG - 6094:18624-18643 MS.gene24080:intron 35.0%
AAAAAACCCAAGTCCCACAT+TGG + 6094:18138-18157 None:intergenic 40.0%
AAAGCAGTTTACAGAGGAGA+GGG + 6094:16812-16831 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG + 6094:18710-18729 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG - 6094:17494-17513 MS.gene24080:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG + 6094:17540-17559 None:intergenic 40.0%
AGGAATACAGATGTCCACAA+GGG + 6094:18641-18660 None:intergenic 40.0%
AGGTCCTGTACAAAACATTG+TGG - 6094:19885-19904 MS.gene24080:CDS 40.0%
AGTCTTCCAATTTCTGACAG+GGG - 6094:19148-19167 MS.gene24080:intron 40.0%
ATATTGTGGGATTGAAGCAC+TGG - 6094:19681-19700 MS.gene24080:CDS 40.0%
ATCAGAAAACTGCACTCTCA+GGG + 6094:18709-18728 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG - 6094:16854-16873 MS.gene24080:CDS 40.0%
ATTGATAGGCTCATAAGGTG+AGG - 6094:18071-18090 MS.gene24080:intron 40.0%
CAAAGTGAAAGACTCCCAAT+AGG + 6094:17480-17499 None:intergenic 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG + 6094:19920-19939 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG - 6094:19668-19687 MS.gene24080:CDS 40.0%
CAGATGAGATGTTGTGTTCT+GGG + 6094:16844-16863 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG - 6094:18648-18667 MS.gene24080:intron 40.0%
CCCAATAGGTCTAATAACTC+AGG + 6094:17466-17485 None:intergenic 40.0%
GAAAGGACAAGAGAGAAAGA+CGG + 6094:18943-18962 None:intergenic 40.0%
GAAGCTATTCAGTTCACTTC+TGG - 6094:18418-18437 MS.gene24080:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG - 6094:19147-19166 MS.gene24080:intron 40.0%
GCTACCCATCATATCTCATT+TGG - 6094:17201-17220 MS.gene24080:intron 40.0%
GCTATAGCTAACAGTCCATT+AGG - 6094:16931-16950 MS.gene24080:CDS 40.0%
GGTAGCCATCATACGAAATA+GGG + 6094:17187-17206 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG - 6094:19849-19868 MS.gene24080:CDS 40.0%
GTTCCCCAAATGAGATATGA+TGG + 6094:17209-17228 None:intergenic 40.0%
TCAGTTAGTTATGCAGTGGT+AGG + 6094:18033-18052 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG - 6094:19146-19165 MS.gene24080:intron 40.0%
TGCTTCAATCCCACAATATC+TGG + 6094:19680-19699 None:intergenic 40.0%
TGTGAACAGTACACATACCT+GGG + 6094:18481-18500 None:intergenic 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG + 6094:19787-19806 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG + 6094:18960-18979 None:intergenic 40.0%
TTGTGAACAGTACACATACC+TGG + 6094:18482-18501 None:intergenic 40.0%
TTTCAAGAGAACACCTACGA+AGG + 6094:19476-19495 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG - 6094:19460-19479 MS.gene24080:CDS 40.0%
! CTGTTATATGGTGGGGAAAA+AGG - 6094:18293-18312 MS.gene24080:intron 40.0%
! CTTTCCACAACAACTTGCTT+GGG - 6094:19923-19942 MS.gene24080:CDS 40.0%
! CTTTTTCCCCACCATATAAC+AGG + 6094:18295-18314 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG + 6094:18680-18699 None:intergenic 40.0%
! TTCAGCTTTTGGTATGGACA+AGG - 6094:17143-17162 MS.gene24080:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG + 6094:18677-18696 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG + 6094:17722-17741 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG + 6094:16838-16857 None:intergenic 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG + 6094:16916-16935 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG + 6094:16836-16855 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG - 6094:17725-17744 MS.gene24080:intron 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG + 6094:16837-16856 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG - 6094:17237-17256 MS.gene24080:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG + 6094:19248-19267 None:intergenic 40.0%
AAACTGCACTCTCAGGGAAT+CGG + 6094:18703-18722 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG - 6094:19822-19841 MS.gene24080:CDS 45.0%
AAGTACCACCCAAGCCATTA+TGG - 6094:17297-17316 MS.gene24080:intron 45.0%
AGCCTGAGCCTTGAATTTAG+AGG + 6094:17010-17029 None:intergenic 45.0%
AGTATCCCCCTGTCAGAAAT+TGG + 6094:19157-19176 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG + 6094:18685-18704 None:intergenic 45.0%
ATGTCAAAGCCATAATCCCC+AGG + 6094:17234-17253 None:intergenic 45.0%
CAAAGCAGTTTACAGAGGAG+AGG + 6094:16813-16832 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG + 6094:18642-18661 None:intergenic 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG + 6094:19925-19944 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG + 6094:19670-19689 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG - 6094:19667-19686 MS.gene24080:CDS 45.0%
CCAGGCAGATATATTCCTAG+AGG + 6094:19709-19728 None:intergenic 45.0%
CCAGGGTAGTTTATATCACC+AGG + 6094:19727-19746 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG - 6094:19724-19743 MS.gene24080:CDS 45.0%
CTCCTCTAAATTCAAGGCTC+AGG - 6094:17005-17024 MS.gene24080:CDS 45.0%
CTTGGCCCTATTTCGTATGA+TGG - 6094:17179-17198 MS.gene24080:intron 45.0%
GATCAAACAATGCTCCTCCA+GGG + 6094:19744-19763 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG + 6094:16845-16864 None:intergenic 45.0%
GGGGATACTCTAGATTACCT+TGG - 6094:19168-19187 MS.gene24080:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG + 6094:17188-17207 None:intergenic 45.0%
GGTGATATAAACTACCCTGG+AGG - 6094:19727-19746 MS.gene24080:CDS 45.0%
GTCTTCCAATTTCTGACAGG+GGG - 6094:19149-19168 MS.gene24080:intron 45.0%
GTTAGTTATGCAGTGGTAGG+CGG + 6094:18030-18049 None:intergenic 45.0%
TCACAGGACAAGGTGGATAA+TGG + 6094:19277-19296 None:intergenic 45.0%
TGAGATATTGCATGCTCGCT+GGG - 6094:17411-17430 MS.gene24080:intron 45.0%
TTGAGATATTGCATGCTCGC+TGG - 6094:17410-17429 MS.gene24080:intron 45.0%
! CATAACCATAATGGCTTGGG+TGG + 6094:17305-17324 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG + 6094:19339-19358 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG - 6094:19706-19725 MS.gene24080:CDS 45.0%
! CCTTTCCACAACAACTTGCT+TGG - 6094:19922-19941 MS.gene24080:CDS 45.0%
! GAACTCCCATGACACTTTTC+AGG + 6094:17733-17752 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG - 6094:17147-17166 MS.gene24080:intron 45.0%
! GTCACTACCTCTGTTTTCTC+TGG + 6094:17040-17059 None:intergenic 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG + 6094:16949-16968 None:intergenic 45.0%
!! GACACTTTTCAGGATCAGCA+TGG + 6094:17723-17742 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG - 6094:17724-17743 MS.gene24080:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG - 6094:18814-18833 MS.gene24080:intron 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG - 6094:18813-18832 MS.gene24080:intron 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG - 6094:19832-19851 MS.gene24080:CDS 45.0%
AACTGCACTCTCAGGGAATC+GGG + 6094:18702-18721 None:intergenic 50.0%
ATCTCATTTGGGGAACTGCC+TGG - 6094:17213-17232 MS.gene24080:intron 50.0%
CAGTCATTTGCGTCTGCAGA+TGG - 6094:19594-19613 MS.gene24080:intron 50.0%
CTAGATTACCTTGGCATCCC+AGG - 6094:19177-19196 MS.gene24080:CDS 50.0%
CTTCACTTAGCTGGAAGCCA+GGG - 6094:19201-19220 MS.gene24080:CDS 50.0%
GAACAGTACACATACCTGGG+AGG + 6094:18478-18497 None:intergenic 50.0%
GAACATGCTAACCTGGAGCT+TGG + 6094:17533-17552 None:intergenic 50.0%
GGATCAAACAATGCTCCTCC+AGG + 6094:19745-19764 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG + 6094:19930-19949 None:intergenic 50.0%
TAGCAATCACAACCACTCCC+TGG + 6094:19221-19240 None:intergenic 50.0%
TCTCATTTGGGGAACTGCCT+GGG - 6094:17214-17233 MS.gene24080:intron 50.0%
TGGGCTATGCTTGCATCTGT+TGG - 6094:17430-17449 MS.gene24080:intron 50.0%
TGGGGCAAAGCAGTTTACAG+AGG + 6094:16818-16837 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG + 6094:19287-19306 None:intergenic 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG + 6094:19197-19216 None:intergenic 50.0%
! ACCTCTGTTTTCTCTGGCCT+TGG + 6094:17034-17053 None:intergenic 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG - 6094:17519-17538 MS.gene24080:intron 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG - 6094:19691-19710 MS.gene24080:CDS 50.0%
ACTGCACTCTCAGGGAATCG+GGG + 6094:18701-18720 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG - 6094:18461-18480 MS.gene24080:intron 55.0%
ATCCCAGGCCTTCACTTAGC+TGG - 6094:19192-19211 MS.gene24080:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG - 6094:17014-17033 MS.gene24080:CDS 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG + 6094:19203-19222 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG - 6094:19200-19219 MS.gene24080:CDS 55.0%
CTCATTTGGGGAACTGCCTG+GGG - 6094:17215-17234 MS.gene24080:intron 55.0%
CTGCAGTTCCACTGGATCCT+TGG + 6094:17268-17287 None:intergenic 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG + 6094:19198-19217 None:intergenic 55.0%
GAAATAGGGCCAAGCCAACG+AGG + 6094:17173-17192 None:intergenic 55.0%
GACGCTTGGCAATGATGGCT+TGG - 6094:19827-19846 MS.gene24080:CDS 55.0%
GCCAAGGCCAGAGAAAACAG+AGG - 6094:17030-17049 MS.gene24080:intron 55.0%
GCTTCATGGCAAGAGCTTGC+TGG - 6094:16868-16887 MS.gene24080:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG + 6094:17263-17282 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG + 6094:17508-17527 None:intergenic 55.0%
TAGGAGGTCGCCTTACACAC+AGG + 6094:18661-18680 None:intergenic 55.0%
! CTTCACACAAGCGGCACTGA+CGG - 6094:19858-19877 MS.gene24080:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG - 6094:17248-17267 MS.gene24080:intron 55.0%
!! TTCACACAAGCGGCACTGAC+GGG - 6094:19859-19878 MS.gene24080:CDS 55.0%
AGTGAAGGCCTGGGATGCCA+AGG + 6094:19188-19207 None:intergenic 60.0%
ATGGACAAGGTCGGCCTCGT+TGG - 6094:17156-17175 MS.gene24080:intron 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG - 6094:19206-19225 MS.gene24080:CDS 60.0%
GCAGAGCTCACAGGACAAGG+TGG + 6094:19284-19303 None:intergenic 60.0%
GGGGAACTGCCTGGGGATTA+TGG - 6094:17222-17241 MS.gene24080:intron 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG - 6094:17257-17276 MS.gene24080:intron 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG - 6094:19865-19884 MS.gene24080:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG - 6094:17502-17521 MS.gene24080:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG - 6094:17161-17180 MS.gene24080:intron 65.0%


Chromosome Type Strat End Strand Name
6094 gene 16730 19972 16730 ID=MS.gene24080
6094 mRNA 16730 19972 16730 ID=MS.gene24080.t1;Parent=MS.gene24080
6094 exon 19651 19972 19651 ID=MS.gene24080.t1.exon1;Parent=MS.gene24080.t1
6094 CDS 19651 19972 19651 ID=cds.MS.gene24080.t1;Parent=MS.gene24080.t1
6094 exon 19404 19554 19404 ID=MS.gene24080.t1.exon2;Parent=MS.gene24080.t1
6094 CDS 19404 19554 19404 ID=cds.MS.gene24080.t1;Parent=MS.gene24080.t1
6094 exon 19162 19294 19162 ID=MS.gene24080.t1.exon3;Parent=MS.gene24080.t1
6094 CDS 19162 19294 19162 ID=cds.MS.gene24080.t1;Parent=MS.gene24080.t1
6094 exon 17442 17534 17442 ID=MS.gene24080.t1.exon4;Parent=MS.gene24080.t1
6094 CDS 17442 17534 17442 ID=cds.MS.gene24080.t1;Parent=MS.gene24080.t1
6094 exon 16730 17041 16730 ID=MS.gene24080.t1.exon5;Parent=MS.gene24080.t1
6094 CDS 16730 17041 16730 ID=cds.MS.gene24080.t1;Parent=MS.gene24080.t1
Gene Sequence

>MS.gene24080

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAGAAAACAGAGGTAGTGACCGATTTCAATTATTTTTATTCTCATTGCTGCTGCTGCTGCTGCATCAATGAATTGTGCTCATTCCTATCATTCCTTAAACATTTTCAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAAGTACCACCCAAGCCATTATGGTTATGTTATGTTATTATTATTGCTTCTTGAATTTTTCATTTAAATAGTTAAATAGTTAACTTGTCCTTTCATTTAATTTACCATTAAGCTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGTTAGCATGTTCTATCTCTCTTATCTATTTGTTCACCTTTATCTTACACAAGTTTGTTCAATTAATAATATAATTACAGTCCATTTTCCACTAATTAGAAAGGGAAAATTGTGTCTTGTTTAACAATTTCAGAAAGCTACAAATGCTCTATGACATTGCTAGTTTGCAAATGAGTATTCCCATGCTGATCCTGAAAAGTGTCATGGGAGTTCAAAAATTAATTGTAGTTTTTCACTTCTTGTGTCTTGTAGTAGTTTGTTTGATCATATTGTTGTTTTTATCTCTCATTTCATCGACAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATAAGGAATTTTTTTAATGATTATGGGAGATGCAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCGGGGAAATATGTCTTTGTCCGCCTACCACTGCATAACTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAAACTCATATCAAGAGTCCTATATTTCCAATGTGGGACTTGGGTTTTTTCCAATATTTGTCAACGGTACTACGACCATTTGAAGAAATTAAGAAAATAGTAATCAGTTTTGATTATCAATTGTGTGCTTTGTTATGGGCAGCATTTTGAACACAACATCTTAGCAAACATAATAAGTTTCAAACCTGTTATATGGTGGGGAAAAAGGGTCAAAGTGTCTTTGCTAACGATATTCAAAAGTTCGACAACACTACATAGAATTGGCCACTCTTAAATAATATTACCGTGATATGCTTTCGTATGTTTCTAAGAAGCTATTCAGTTCACTTCTGGTCCCACTCTAAGTCTTATAAAGAGGTTGTTTGCTCCTCCCAGGTATGTGTACTGTTCACAATACTGTTATCCTGTCGAAATTGTCACTAACTTGAGTGTCAAAGTGTATCTTATCGAAATTCTCACAAACTTGAGTATCAAAGTGTATCTTATCGAAATTCTCACTAACTTGAATTTAAAGTGTATTTTGGTATTCACCCTTGTGGACATCTGTATTCCTGTGTGTAAGGCGACCTCCTAACCAACAGATGTTCAAACCCCGATTCCCTGAGAGTGCAGTTTTCTGATTGACTTTGATGCTTGTATCAAGCTTAAGCTACAAGGGGAGTGCCACAATATTAGAATTATTTGGTTATTACTCTTATTGTTAAATGTTAAGGGGCTAATGGACTTGGGCTTATAGTACTAGCACTTAACCAAGTTATTAGATAAATAGGGATGCTAAAGGTTAGTGTTTTGTTTCACATTACATCTTTCATTATACTTTCAGCATACTGAACCGTCTTTCTCTCTTGTCCTTTCCCTTATCCCTATACCAATAATTCTTTGGCACTTTCTTTTCCATTATTGCACTTTATTAATTGAAACTAGTTGATAAATTTTTACCTGCATGAGAATAAATTTAGCTCAGGCTGATGTTGTATACTTTTTTACGAAGCAAATAAACTGGTGAGTTGTAATAATGCAATTGACACTTATTACTTATGAGTCTTCCAATTTCTGACAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTAATGCTTGTATCCATTATCCACCTTGTCCTGTGAGCTCTGCTAATATTATTTATATCTTGTGACACTTGTCTTCCAGTACTCTTTGAGCCCATATGATGTTAGTGATGATGTGGCGTAGCACTACTAATTATTAGATTTTTAACTTAGTGGTATTGGATGTATTGGGACCTTTCGATTCTACAAATCGAACATTTCTCATGGCTTTTAATCCTTCGTAGGTGTTCTCTTGAAATTAAAGAAGTTAATTTGCTTTCATAACTCATTTGTTTGGGCTAAAATAAAAAGTTTCAGTAGTTGGAGCTGCTTAACCATAAATTTGTTTCTTTTGGACAGTCATTTGCGTCTGCAGATGGATTAGCTACTGTTACTACTAATTTGGGATCTTATCATAAAACAGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>MS.gene24080.t1

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARENRAFGMDKVGLVGLALFRMMATHHISFGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH