AlfalfaGEDB | MS.gene29992

M. sativa cultivar XinJiangDaYe / MS.gene29992

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0097159 GO:1901363
PFAM: PF01300.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29992.t1	RHN45233.1	94	302	14	2	1	299	42	342	4.10E-163	583.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29992.t1	P0AFR5	27.4	215	139	3	66	280	9	206	1.6e-22	108.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29992.t1	A0A396GXK8	94.0	302	14	2	1	299	42	342	3.0e-163	583.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene29992	0.847857	8.87E-60	-1.69E-46
MS.gene049171	MS.gene29992	0.902064	1.42E-78	-1.69E-46
MS.gene049173	MS.gene29992	0.822088	2.86E-53	-1.69E-46
MS.gene049217	MS.gene29992	0.872314	3.50E-67	-1.69E-46
MS.gene049222	MS.gene29992	0.917051	8.50E-86	-1.69E-46
MS.gene049232	MS.gene29992	0.85147	8.69E-61	-1.69E-46
MS.gene049285	MS.gene29992	0.893734	4.77E-75	-1.69E-46
MS.gene049320	MS.gene29992	0.893327	6.97E-75	-1.69E-46
MS.gene049427	MS.gene29992	0.819361	1.21E-52	-1.69E-46
MS.gene049609	MS.gene29992	0.918392	1.65E-86	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29992.t1	MTR_7g034590	88.757	169	15	2	1	166	1	168	4.18e-107	309
MS.gene29992.t1	MTR_7g034590	90.854	164	11	2	1	161	1	163	3.51e-106	307
MS.gene29992.t1	MTR_7g034590	78.107	169	15	3	1	166	1	150	3.30e-88	260
MS.gene29992.t1	MTR_6g045617	79.808	104	17	2	1	101	1	103	3.73e-52	167
MS.gene29992.t1	MTR_6g045607	93.590	78	5	0	167	244	1	78	8.54e-47	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29992.t1	AT3G01920	64.875	279	92	2	10	288	25	297	7.61e-134	382
MS.gene29992.t1	AT3G01920	59.150	306	92	3	10	288	25	324	2.06e-127	366

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Find 79 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGTCGAAAAGCCATGG+AGG	0.697341	7.1:-61042644	None:intergenic
AAATGGCATCGTCAGGCATA+CGG	0.567821	7.1:-61045850	None:intergenic
AAGGGTGATTAACATTCAAA+TGG	0.488049	7.1:-61048390	None:intergenic
AATACCATCCAGTCTGAAAT+TGG	0.281224	7.1:-61048320	None:intergenic
AATATTATATTACAGGATGG+TGG	0.590435	7.1:+61042841	MS.gene29992:intron
AATTGCCTCCCAGAGTCCTA+CGG	0.550070	7.1:+61047430	MS.gene29992:CDS
AATTTCAGACTGGATGGTAT+TGG	0.403596	7.1:+61048322	MS.gene29992:CDS
ACAGTACACGTTCATCTTAA+TGG	0.283468	7.1:+61045748	MS.gene29992:intron
ACATACCTTGTACATATTAA+TGG	0.203028	7.1:-61045902	None:intergenic
ACATAGATAAGTACACATCT+GGG	0.647148	7.1:+61044542	MS.gene29992:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCTGCATCACTTCAT+TGG	-	chr7.1:61046068-61046087	None:intergenic	30.0%
AAGTTTACAAATTCTTGCGT+TGG	+	chr7.1:61047481-61047500	MS.gene29992:intron	30.0%
AATAGGAAATTTCATGTTCG+CGG	+	chr7.1:61047107-61047126	MS.gene29992:intron	30.0%
AATTGCACACAATAAGTAAG+TGG	-	chr7.1:61047849-61047868	None:intergenic	30.0%
ACATAGATAAGTACACATCT+GGG	+	chr7.1:61044542-61044561	MS.gene29992:CDS	30.0%
AGATAATAATCGCTTCAACA+AGG	+	chr7.1:61042754-61042773	MS.gene29992:CDS	30.0%
ATACAGCATGAACACTAAAT+TGG	-	chr7.1:61045680-61045699	None:intergenic	30.0%
ATCTAACAACTTCGATGTAA+AGG	-	chr7.1:61045023-61045042	None:intergenic	30.0%
ATTCAGTAACCTTGTACATT+AGG	+	chr7.1:61045968-61045987	MS.gene29992:intron	30.0%
CAAATTGCAAACTTTCCTTA+TGG	+	chr7.1:61048197-61048216	MS.gene29992:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	61042611	61048397	61042611	ID=MS.gene29992
chr7.1	mRNA	61042611	61048397	61042611	ID=MS.gene29992.t1;Parent=MS.gene29992
chr7.1	exon	61042611	61042775	61042611	ID=MS.gene29992.t1.exon1;Parent=MS.gene29992.t1
chr7.1	CDS	61042611	61042775	61042611	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61042856	61042971	61042856	ID=MS.gene29992.t1.exon2;Parent=MS.gene29992.t1
chr7.1	CDS	61042856	61042971	61042856	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61044125	61044178	61044125	ID=MS.gene29992.t1.exon3;Parent=MS.gene29992.t1
chr7.1	CDS	61044125	61044178	61044125	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61044271	61044295	61044271	ID=MS.gene29992.t1.exon4;Parent=MS.gene29992.t1
chr7.1	CDS	61044271	61044295	61044271	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61044511	61044633	61044511	ID=MS.gene29992.t1.exon5;Parent=MS.gene29992.t1
chr7.1	CDS	61044511	61044633	61044511	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61045752	61045918	61045752	ID=MS.gene29992.t1.exon6;Parent=MS.gene29992.t1
chr7.1	CDS	61045752	61045918	61045752	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61046888	61046957	61046888	ID=MS.gene29992.t1.exon7;Parent=MS.gene29992.t1
chr7.1	CDS	61046888	61046957	61046888	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61047363	61047461	61047363	ID=MS.gene29992.t1.exon8;Parent=MS.gene29992.t1
chr7.1	CDS	61047363	61047461	61047363	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1
chr7.1	exon	61048317	61048397	61048317	ID=MS.gene29992.t1.exon9;Parent=MS.gene29992.t1
chr7.1	CDS	61048317	61048397	61048317	ID=cds.MS.gene29992.t1;Parent=MS.gene29992.t1

Gene Sequence

>MS.gene29992

ATGGAAATGGCAGCTTGTATTTGTGGCCATAAACCTCCATGGCTTTTCGACGCTTTCTCTCATTCAAAACCACGAAGCCACAAATCCCGAGGAGTAGTAGTATCAATGGTTATTAAACGAAGCCCAAAGCGTCTCAAATACACAGATAATAATCGCTTCAACAAGGTCATTCATTCATTACTCTTTTTCCTCTTCTTCCCTTTACACTTTCAACTCAATTCAACTGAACCAATATTATATTACAGGATGGTGGTTTGGTTTACATTGAAGCTGACCCATCTGGTTCTGACTCATGGAAATTGGAATCAGTTGTTAATCTTTTCAAACAAGGTGCTGTTGGAGTCATCCCTACTGATACACTGTCAGTGCTATCTATCTATCTATTTTCCTTACTTCCTTCTTTTCTTGCTTGAAATTTCATAATGTTTCTTTTTTATTTGTTATCATTTCTTGTTTTGTAAAAATAAAAATAAAAAGGAAATATAATATCCAAGTAAACTGTCATTTTAGTCTCTACACGTGTGAGACAATGTGTCACACTATCTATGAAGCGCACTGACACGTCAAAACTGGTAATAATTTGAGAAAATGAATTATTTCAACGTAATCACATTTGTCGGTATCGGTATCAGACATCAGACTCGTTTTTTTTTATCAGAGGTATGGGTTGTAACCGATAATAAGTTGAGAAAATGAAAAAAATCAATGTAATAAATAAAATGTGTCAGTGCTGGACACCAAACATGCATTCGATGAGAAGTTTGGTGTTGGACACCAAACATGCATTCGATGAGAAGTTTGGTGGTCAGGTCATATAGTCTCTAAATGTATCAAAAATAAAACTTAATGCATCTTTGTTGAGTATGGCTCATAGGTACCTGAGAAGTGGGTAGGGTTGAACAAACAGAGCCATTGGGGTTATGTTACAATCTGGACCGTAATATTTAAATACAAGTTGTACAGTGTAAATCATAATCATTCACTGATAATAAAAAGGAACTGCAACTGCTCTGCTGTTGGAGAATTAGGCACAATTAGCCGAACTTCATTAACAAACATTCTGTGTTGGGCCAGTCCATGCATGGTTTTGCTCTTGTTTCAATTGGTCCCTCAGATTAGTCACTCATTGGGTCGGATACCAAGTTTTAAAAATATAAAAAATTGTGAGTTTATTGTTTCTTTAATCTTTTCTACCGGGCTGTCATTCTAACAATCTTCTAGTAGCAATTTGACGTGCCAAACTGAACTAATGCAAGACCCATTCAAGGACCAATGTAACTAGCGAAAGACATATTCGAGGGCAAAATTAAATTATGAAGAGACACATTCAAGAATATTTTTGTAACTTCGACTAATGCAGGGCCTATAGTGATAACACTCTACACATTGAGAGACTAAAATGACCGTTAACTCCATATTATCCATTTATTTATGAGCAAGTAGGAGAGGATTAGTTTTCTTCTAATCTCTATATGTTAACAAATTCATTGATGTCATTGTTTTTTTTTTAATAGATATGCGATAGCATGTGACCTAACAAACAACTCAGCCATTGAACGGCTACGTAGGTATAATACAAGTTTGTTAGTCTCAATTAAACCACGTTTTACCCCCCCTAAATCACTGCATTAACCAGGAGTATATTTGTGTTGTGTTACAGAATCAAGAATATAGACGGTTCAAAGGTGAGGAACACAGCTATCTTGTCTTTATTCAGCTGTTCTTGCGCTTCCAATTGGATTTCTATGTAGTGGTGCTTGTCACACGTGTCCAATTACTTTACGTTTTATTTAGATTAAATGTGTTGATCACATCATCAAAATTTTCTTCATGTATGTTTGTATTCAGTAATGCTACTTGTTGAAGTCATTGATGATTATGGTACCTCTGTTACTTGTAGCCGCTTAGCATCATATGCCACTCATTTAGCGACATAGATAAGTACACATCTGGGTTTCCGTGTGGTGATGGTCAAGGCCATGCAAATTTATTCAAAGCTGTTAAGCATTGCTTACCTGGTCCTGTAAGTATTCTCTCAAAAGTTAATTAATGAATTTGTGAGCATATTAATGATTTTTGGTGGAGGGAAATTACATATGTGTGACAAGCTGAGCTATTTTTTATACAGACCATGAACTATCAAGTAGCTTGACATCTATTTCATGGTGATTTTTGCCAAGTTGAATAACGCTGCTAAGAATGATGTGTGTGTGTATAGAAAAAACAAAATAATAGCTAAAATTTCAACACGCCTGTTTGCCAAAAATTGCTAAGTACTAATGATTTAACCATGAAGTTCAGAGTTCAATCCCTGAAAACTAACATAATTTCTAACTTACTAATATTTGTCTATCCAAAGAAAAAATTCAAAAATACTATGGGTATCATGCGAAATATCAAGACATAGGACCTTTACATCGAAGTTGTTAGATGAATGGATGTCAGTTCATTTATATTTAGTTGTTGTTGATGTGTATCTAAGCCATTAAGACTACGTCCGAATAATTACTATGTTGTTAGTCTGCGATAGCCGAGTAGAACTTGGGTTTAGTGCAGAGCTAAACACAGGTGCAGTATGTTTTGTGCTAACTGATTTAGTGGCCGCAAATAGCAGTGGAATAGAGGCTGAATGGCCCTGTAGCAGCCGGCTATTTACAAAGACAGAGACTGTGATGTTCAGGTTCTCTGAATAGCCCTGTAGGAGGATTCTCATCTGTTCTGATCACCTCTATTTTCTGGCTATGGCGACGATGAAAGTCTCCCGCTTCTTGCCTCTGTTTTCTTTAATTTTTCATCTCTGTTTCTGCGCAGATTTAGAATTTATGTTTAGTGGTATACTTTTCTCTAGTCTTCACAATAGTGGTCATCCCATTAACTGCTATTCCGCTTTAGCAGTTTCGGGTTTGGGCACGTCTAGCCCCTTTTCGAGATTAATAACATATTTGTTATGTTATTCAGTCATTCTTATTCATCAATTGGTTTTTCTCGTTTAAACATGTTATTCTCTCCATTTACTGCAATTTGCAATATCATGTCTTTATGTGGGTGAATCCTATTGTTTTGTTACCAATTTAGTGTTCATGCTGTATAGATATTGACAATTACAGTTACTTGCTAACACTAGTCATGTTTGAGTGACAGTACACGTTCATCTTAATGGCTAGCAAAGCATTACCAAAACAGTGCATAAGGTTTGGGACTACTGCTGCCAAATATGCATCACGGAAAAATGTGGGTGTCCGTATGCCTGACGATGCCATTTGTCAAGCAATACTAAAGGAGATGAGTACACCATTAATATGTACAAGGTATGTTTAATTTGTTGGATCATTTTTTGTCTTGGAAAAATGATATTTTATTCAGTAACCTTGTACATTAGGCCAAAAGTAGGTTGAGGAGACCACCCTGAAAAACACATCACTTTGAAATGGCAAGATAAGATGGCACTGTCACACCAATGAAGTGATGCAGATATTTAAAAATGAAATGGTTAATATGATATGATGACAAATCAGACCAAGATAATATTAAGTTAAGCTGATGCACTGTTATACCCCTTTAAGGTTTTGTTTGCGAGTTAGGTTTCGAAGGGGAGGGGAGGAGAGGACTTACTTTTCTTTTTTGAATTAAAGACACTATAAAATGTTTTTAAAAATAAATCAAGTGTGATTGAAGTGTGATTAAAGACACTATGCACTGTTATACCCCTTGTATCATTTTTATGTTGTTCTTTCAATTTTTGCAAAATATCAAATATATATCGACATACGGACTTAGCCCTCCAAAATGCTCTAAAACCCAACTCACAAACAAAGCCCAAGTGTATATACCCATTCGCATTAGCTTCAGAGCAAAGTTCTAAATGAGGGTAAATAAGTTGGCGGAAAATGCATGATGCAGAAGCAAACACTTGGTCTTGATGTGGCTACATCATCTAACCATTTTTACATCAGCCTATCTCAGGCAATGAGGCATTTTTCCACCCCCACCTCAGTGCCTCGGCAACCATTTGTGATGGATGTGAACGGGTGGATTTAGTCCCACATTGCCTAAAGACATGGTTCTCAACATACAAGCCGGTTTCGTAAGGTTGAGTTAGATCCAACCAAAATTGTAAGAATTGTCTATCCAATTTCTTTTCAGTATACCTGCCTATAACCTTTAATGTCATTAGGGCATTGGACCCTTATTTTCCATAATTGTTCACAAGAGTATGGAGCATAATAGTTGATGCTTGTACCTAAATCTTACCTTGGAATTTTTCTTCTTTATGTTAGCATCAAGTTCCTGAACGAAGACGAATGGATGATTGATCCAGTTATGATAGCTGATACATATGGACCAGAGGTATCACCGTTTCTATTGCATGGTTATTTTTCCAGTGTAAATAATTATAAAATATAATGATTTTAGCCCCTTCCCAAACAAAAGGGAAAATATGTGTTGCATTTTATTATTTTTATATGTGTTAGAAATAGGCTGTAAAAAAAACAAGAAATAGGAAATTTCATGTTCGCGGCACATTCTATTTACACAGTCATTTTTCTTTACCGATAAGAATTTTCCAGTTACATTTTACACATGAAGAATGTGCTTAAAATTGAATACATGATTTTTAGACTATTTATCACAAATCTACTTGGTATGCTTGGCTCTACCGAACCAAAAAAGTTTGCTAATTTATTATATTCTCTACTAATAAGTTTTATAGGTTTTACAAAAGATATTAAAACCATTACTTTGGTTTTTCAGGGTCTTGATTTTGTTGTTGATGGTGGTGTAAGAGTGGCTCAGTCGTCCACTGTGGTTGACATGACCAAATTGCCTCCCAGAGTCCTACGGGAAGGAAAGGTAGTTATCTATCAATTTGAAGTTTACAAATTCTTGCGTTGGTTTTTATATGCAAGACCCATTTTTTACCCATTGTGCCATTGGAGACCGCTAATATGGATGGTACACTTGAAAACTGATATATATAAAAACCCATTCATAAATTTCAAGTTCTTAAGAGTTCTATCATCAAAATGAAATTGTTTTGGGTCTATAAATCCTACTCCCTCCGGTCACTATTATAAGCAAAGGAACACTTTAGGTTCATTGAATAATTAATATAGCTGGTCTATATTATAGACTAAAGACTAGATACATCAATTGTTCAATGAATCTAAAAAGTGGTTTTGTGTTTATAACCAGATGTGATCAATACTTTATTATTAGCATATGTAGAAAGTGATGCCACTTACTTATTGTGTGCAATTCAGTAAGAGCTGTCCAAATGGCTTTTGACCCATTAGCTAACCCGGCTCACAGGTGGGTTGGATTGCAAAACATTTAGGTCACTTATACAACGAGATATTTGGGCCATACTACTCAACCCACGAGCTAACATGATTTTGTTATAACCCATGTGAGGTCAAGTTCACACCGCTTCTTTGAAATGCCCCATCTTACATGGTGTCTCGCCACACTCCGCCATCGAGCGGTGGCACCACATTTCCCACAATTGATTTCCATAATGTTGCAATGTTTTGTAAGAGTATGAGCAACAAGAATATAATTTTTGTTACGTTTAGTAGCATTTCTATTCAAATTGCAAACTTTCCTTATGGTGCTAAGTAGTGGTAGTATGCAATATCCTATGTTCAAATATAATTCATGCTTGTTGCAGTGAACTCAGAAAAGTTACTTAGAGTCATGTGATTTCAGGGTCCAATTTCAGACTGGATGGTATTGGAAGATAATCAGCAAACTGATGGTGAAGAGGATCTGATCCCTGCTGCCATTTGA

Protein sequence

>MS.gene29992.t1

MEMAACICGHKPPWLFDAFSHSKPRSHKSRGVVVSMVIKRSPKRLKYTDNNRFNKDGGLVYIEADPSGSDSWKLESVVNLFKQGAVGVIPTDTLYAIACDLTNNSAIERLRRIKNIDGSKPLSIICHSFSDIDKYTSGFPCGDGQGHANLFKAVKHCLPGPYTFILMASKALPKQCIRFGTTAAKYASRKNVGVRMPDDAICQAILKEMSTPLICTSIKFLNEDEWMIDPVMIADTYGPEGLDFVVDGGVRVAQSSTVVDMTKLPPRVLREGKGPISDWMVLEDNQQTDGEEDLIPAAI