AlfalfaGEDB | MS.gene44058

M. sativa cultivar XinJiangDaYe / MS.gene44058

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44058.t1	RHN80725.1	99	104	1	0	1	104	803	906	1.40E-49	205.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44058.t1	A0A396JX23	99.0	104	1	0	1	104	803	906	9.9e-50	205.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene44058	0.81069	1.02E-50	-1.69E-46
MS.gene049159	MS.gene44058	0.819232	1.29E-52	-1.69E-46
MS.gene04918	MS.gene44058	0.836391	9.62E-57	-1.69E-46
MS.gene04920	MS.gene44058	0.80768	4.49E-50	-1.69E-46
MS.gene049254	MS.gene44058	0.865037	7.90E-65	-1.69E-46
MS.gene049283	MS.gene44058	0.813491	2.49E-51	-1.69E-46
MS.gene049343	MS.gene44058	0.830174	3.41E-55	-1.69E-46
MS.gene049368	MS.gene44058	0.814422	1.55E-51	-1.69E-46
MS.gene049452	MS.gene44058	0.840904	6.56E-58	-1.69E-46
MS.gene049499	MS.gene44058	0.817435	3.30E-52	-1.69E-46
MS.gene049711	MS.gene44058	0.810254	1.26E-50	-1.69E-46
MS.gene049850	MS.gene44058	0.815432	9.27E-52	-1.69E-46
MS.gene049873	MS.gene44058	0.809871	1.53E-50	-1.69E-46
MS.gene049983	MS.gene44058	0.872316	3.49E-67	-1.69E-46
MS.gene050026	MS.gene44058	0.807945	3.94E-50	-1.69E-46
MS.gene050355	MS.gene44058	0.817925	2.56E-52	-1.69E-46
MS.gene050559	MS.gene44058	0.838938	2.14E-57	-1.69E-46
MS.gene050561	MS.gene44058	0.830372	3.05E-55	-1.69E-46
MS.gene050562	MS.gene44058	0.822725	2.03E-53	-1.69E-46
MS.gene050759	MS.gene44058	0.81986	9.30E-53	-1.69E-46
MS.gene050941	MS.gene44058	0.800036	1.74E-48	-1.69E-46
MS.gene050962	MS.gene44058	0.807118	5.91E-50	-1.69E-46
MS.gene051181	MS.gene44058	0.812904	3.35E-51	-1.69E-46
MS.gene051279	MS.gene44058	0.809778	1.60E-50	-1.69E-46
MS.gene051594	MS.gene44058	0.806367	8.51E-50	-1.69E-46
MS.gene051719	MS.gene44058	0.803631	3.18E-49	-1.69E-46
MS.gene051720	MS.gene44058	0.80518	1.51E-49	-1.69E-46
MS.gene051744	MS.gene44058	0.836261	1.04E-56	-1.69E-46
MS.gene051975	MS.gene44058	0.803486	3.41E-49	-1.69E-46
MS.gene052108	MS.gene44058	0.809526	1.81E-50	-1.69E-46
MS.gene052463	MS.gene44058	0.834677	2.61E-56	-1.69E-46
MS.gene052516	MS.gene44058	0.810492	1.12E-50	-1.69E-46
MS.gene052518	MS.gene44058	0.818439	1.96E-52	-1.69E-46
MS.gene052519	MS.gene44058	0.872633	2.74E-67	-1.69E-46
MS.gene052533	MS.gene44058	0.801561	8.50E-49	-1.69E-46
MS.gene052534	MS.gene44058	0.815376	9.54E-52	-1.69E-46
MS.gene052582	MS.gene44058	0.822568	2.21E-53	-1.69E-46
MS.gene052584	MS.gene44058	0.824531	7.68E-54	-1.69E-46
MS.gene052685	MS.gene44058	0.824708	6.97E-54	-1.69E-46
MS.gene052773	MS.gene44058	0.824707	6.98E-54	-1.69E-46
MS.gene052863	MS.gene44058	0.814798	1.28E-51	-1.69E-46
MS.gene053006	MS.gene44058	0.812259	4.64E-51	-1.69E-46
MS.gene053079	MS.gene44058	0.827302	1.69E-54	-1.69E-46
MS.gene053146	MS.gene44058	0.801628	8.23E-49	-1.69E-46
MS.gene053226	MS.gene44058	0.842713	2.19E-58	-1.69E-46
MS.gene053272	MS.gene44058	-0.806635	7.48E-50	-1.69E-46
MS.gene053296	MS.gene44058	0.803459	3.45E-49	-1.69E-46
MS.gene05350	MS.gene44058	0.801901	7.24E-49	-1.69E-46
MS.gene053575	MS.gene44058	0.813443	2.55E-51	-1.69E-46
MS.gene05364	MS.gene44058	0.806252	9.00E-50	-1.69E-46
MS.gene053931	MS.gene44058	0.822976	1.78E-53	-1.69E-46
MS.gene053963	MS.gene44058	0.811012	8.66E-51	-1.69E-46
MS.gene05415	MS.gene44058	0.830074	3.60E-55	-1.69E-46
MS.gene054236	MS.gene44058	0.818462	1.94E-52	-1.69E-46
MS.gene05423	MS.gene44058	0.83838	2.98E-57	-1.69E-46
MS.gene054479	MS.gene44058	0.820456	6.79E-53	-1.69E-46
MS.gene054582	MS.gene44058	0.804057	2.59E-49	-1.69E-46
MS.gene05458	MS.gene44058	0.817718	2.85E-52	-1.69E-46
MS.gene054651	MS.gene44058	0.86943	3.11E-66	-1.69E-46
MS.gene055222	MS.gene44058	0.802473	5.52E-49	-1.69E-46
MS.gene055228	MS.gene44058	0.806766	7.01E-50	-1.69E-46
MS.gene055513	MS.gene44058	0.808417	3.13E-50	-1.69E-46
MS.gene055586	MS.gene44058	0.803525	3.34E-49	-1.69E-46
MS.gene055589	MS.gene44058	0.805697	1.18E-49	-1.69E-46
MS.gene055818	MS.gene44058	0.836609	8.47E-57	-1.69E-46
MS.gene055841	MS.gene44058	0.834901	2.29E-56	-1.69E-46
MS.gene056050	MS.gene44058	0.804544	2.05E-49	-1.69E-46
MS.gene056174	MS.gene44058	0.858119	1.03E-62	-1.69E-46
MS.gene056215	MS.gene44058	0.819039	1.43E-52	-1.69E-46
MS.gene056272	MS.gene44058	0.812993	3.21E-51	-1.69E-46
MS.gene056506	MS.gene44058	0.806489	8.03E-50	-1.69E-46
MS.gene056595	MS.gene44058	0.807402	5.14E-50	-1.69E-46
MS.gene056699	MS.gene44058	0.820187	7.83E-53	-1.69E-46
MS.gene056776	MS.gene44058	0.846928	1.60E-59	-1.69E-46
MS.gene056779	MS.gene44058	0.814257	1.69E-51	-1.69E-46
MS.gene05686	MS.gene44058	0.865904	4.21E-65	-1.69E-46
MS.gene05690	MS.gene44058	0.839987	1.14E-57	-1.69E-46
MS.gene057026	MS.gene44058	0.804955	1.68E-49	-1.69E-46
MS.gene057034	MS.gene44058	0.809119	2.22E-50	-1.69E-46
MS.gene057102	MS.gene44058	0.83463	2.68E-56	-1.69E-46
MS.gene057155	MS.gene44058	0.803102	4.09E-49	-1.69E-46
MS.gene057208	MS.gene44058	0.846351	2.29E-59	-1.69E-46
MS.gene057598	MS.gene44058	0.822255	2.61E-53	-1.69E-46
MS.gene057693	MS.gene44058	0.818598	1.80E-52	-1.69E-46
MS.gene057855	MS.gene44058	0.810917	9.08E-51	-1.69E-46
MS.gene057915	MS.gene44058	0.809308	2.02E-50	-1.69E-46
MS.gene058008	MS.gene44058	0.842554	2.41E-58	-1.69E-46
MS.gene058009	MS.gene44058	0.871827	5.08E-67	-1.69E-46
MS.gene058010	MS.gene44058	0.82354	1.31E-53	-1.69E-46
MS.gene058037	MS.gene44058	0.846303	2.36E-59	-1.69E-46
MS.gene058159	MS.gene44058	0.810918	9.08E-51	-1.69E-46
MS.gene058279	MS.gene44058	0.803226	3.86E-49	-1.69E-46
MS.gene058625	MS.gene44058	0.835782	1.37E-56	-1.69E-46
MS.gene058781	MS.gene44058	0.837186	6.03E-57	-1.69E-46
MS.gene058783	MS.gene44058	0.8626	4.52E-64	-1.69E-46
MS.gene058979	MS.gene44058	0.840742	7.24E-58	-1.69E-46
MS.gene059272	MS.gene44058	0.810232	1.28E-50	-1.69E-46
MS.gene05952	MS.gene44058	0.811088	8.34E-51	-1.69E-46
MS.gene05954	MS.gene44058	0.802329	5.91E-49	-1.69E-46
MS.gene059625	MS.gene44058	0.832771	7.81E-56	-1.69E-46
MS.gene059842	MS.gene44058	0.814271	1.68E-51	-1.69E-46
MS.gene05985	MS.gene44058	-0.835616	1.51E-56	-1.69E-46
MS.gene060258	MS.gene44058	0.81174	6.02E-51	-1.69E-46
MS.gene060310	MS.gene44058	0.800971	1.12E-48	-1.69E-46
MS.gene060322	MS.gene44058	0.813264	2.80E-51	-1.69E-46
MS.gene060435	MS.gene44058	0.80197	7.00E-49	-1.69E-46
MS.gene060521	MS.gene44058	0.809589	1.76E-50	-1.69E-46
MS.gene06052	MS.gene44058	0.808379	3.19E-50	-1.69E-46
MS.gene060840	MS.gene44058	0.812137	4.93E-51	-1.69E-46
MS.gene060932	MS.gene44058	0.816664	4.92E-52	-1.69E-46
MS.gene060935	MS.gene44058	0.850923	1.24E-60	-1.69E-46
MS.gene060937	MS.gene44058	0.84663	1.93E-59	-1.69E-46
MS.gene061100	MS.gene44058	0.815808	7.65E-52	-1.69E-46
MS.gene061160	MS.gene44058	0.803178	3.95E-49	-1.69E-46
MS.gene061188	MS.gene44058	0.802657	5.06E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 16 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTGTAGCAGTCCCTCTGGC+AGG	0.468310	1.3:-57947055	MS.gene44058:CDS
TTTCAGATTCGTACCTTCCT+CGG	0.487984	1.3:+57946974	None:intergenic
CTCTGATGGTATAGCTACAA+AGG	0.532244	1.3:-57947267	MS.gene44058:CDS
ATATTTGACTTCTCCGAGGA+AGG	0.549457	1.3:-57946987	None:intergenic
GTGGATTGTAGCAGTCCCTC+TGG	0.554454	1.3:-57947059	MS.gene44058:CDS
GGTGCCTCAAATTTCTCTGA+TGG	0.559962	1.3:-57947281	MS.gene44058:CDS
TATACCATCAGAGAAATTTG+AGG	0.562160	1.3:+57947277	None:intergenic
ATCAGATTTCTCCCTGCCAG+AGG	0.577582	1.3:+57947043	None:intergenic
TCAGATTTCTCCCTGCCAGA+GGG	0.589490	1.3:+57947044	None:intergenic
AGCAGAAGTTACTACTGATG+TGG	0.591016	1.3:-57947078	MS.gene44058:CDS
TTGTAGCAGTCCCTCTGGCA+GGG	0.602924	1.3:-57947054	MS.gene44058:CDS
GGTGATAATGATGACATGCT+TGG	0.621093	1.3:-57947014	MS.gene44058:CDS
AGGGAGAAATCTGATGAAGA+TGG	0.631588	1.3:-57947035	MS.gene44058:CDS
AAGGTTAAATCATCAGAACA+TGG	0.666854	1.3:-57947248	MS.gene44058:CDS
GAATATGCATGTTACTTGTG+AGG	0.697394	1.3:-57947180	MS.gene44058:CDS
TGATATATTTGACTTCTCCG+AGG	0.718503	1.3:-57946991	MS.gene44058:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTCAATTCAAGTTTTAG+TGG	-	chr1.3:57947056-57947075	MS.gene44058:CDS	20.0%
!!!	TATGATCAATTTTTTCAAGA+GGG	-	chr1.3:57947134-57947153	MS.gene44058:CDS	20.0%
!	TGAAAAAATTGATCATAGTC+TGG	+	chr1.3:57947131-57947150	None:intergenic	25.0%
!!!	CTATGATCAATTTTTTCAAG+AGG	-	chr1.3:57947133-57947152	MS.gene44058:CDS	25.0%
	AAGGTTAAATCATCAGAACA+TGG	-	chr1.3:57947020-57947039	MS.gene44058:CDS	30.0%
	TATACCATCAGAGAAATTTG+AGG	+	chr1.3:57946994-57947013	None:intergenic	30.0%
!	GAATATGCATGTTACTTGTG+AGG	-	chr1.3:57947088-57947107	MS.gene44058:CDS	35.0%
!	TGATATATTTGACTTCTCCG+AGG	-	chr1.3:57947277-57947296	MS.gene44058:CDS	35.0%
	AGCAGAAGTTACTACTGATG+TGG	-	chr1.3:57947190-57947209	MS.gene44058:CDS	40.0%
	AGGGAGAAATCTGATGAAGA+TGG	-	chr1.3:57947233-57947252	MS.gene44058:CDS	40.0%
	CTCTGATGGTATAGCTACAA+AGG	-	chr1.3:57947001-57947020	MS.gene44058:CDS	40.0%
!	ATATTTGACTTCTCCGAGGA+AGG	-	chr1.3:57947281-57947300	MS.gene44058:CDS	40.0%
!	GGTGATAATGATGACATGCT+TGG	-	chr1.3:57947254-57947273	MS.gene44058:CDS	40.0%
	ATCAGATTTCTCCCTGCCAG+AGG	+	chr1.3:57947228-57947247	None:intergenic	50.0%
	TCAGATTTCTCCCTGCCAGA+GGG	+	chr1.3:57947227-57947246	None:intergenic	50.0%
	ATTGTAGCAGTCCCTCTGGC+AGG	-	chr1.3:57947213-57947232	MS.gene44058:CDS	55.0%
	TTGTAGCAGTCCCTCTGGCA+GGG	-	chr1.3:57947214-57947233	MS.gene44058:CDS	55.0%
!	GTGGATTGTAGCAGTCCCTC+TGG	-	chr1.3:57947209-57947228	MS.gene44058:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	57946988	57947302	57946988	ID=MS.gene44058
chr1.3	mRNA	57946988	57947302	57946988	ID=MS.gene44058.t1;Parent=MS.gene44058
chr1.3	exon	57946988	57947302	57946988	ID=MS.gene44058.t1.exon1;Parent=MS.gene44058.t1
chr1.3	CDS	57946988	57947302	57946988	ID=cds.MS.gene44058.t1;Parent=MS.gene44058.t1

Gene Sequence	>MS.gene44058 GTGCCTCAAATTTCTCTGATGGTATAGCTACAAAGGTTAAATCATCAGAACATGGAAAAGTCAGTGACAATTTCAATTCAAGTTTTAGTGGTTCAGATATGAATATGCATGTTACTTGTGAGGAGTCAATACGTGACTCGCCAGACTATGATCAATTTTTTCAAGAGGGTTATTGTAAAGCATCAGTTGACTGTCATGAATCAGCAGAAGTTACTACTGATGTGGATTGTAGCAGTCCCTCTGGCAGGGAGAAATCTGATGAAGATGGTGATAATGATGACATGCTTGGTGATATATTTGACTTCTCCGAGGAAG
Protein sequence	>MS.gene44058.t1 VPQISLMVULQRLNHQNMEKSVTISIQVLVVQIUICMLLVRSQYVTRQTMINFFKRVIVKHQLTVMNQQKLLLMWIVAVPLAGRNLMKMVIMMTCLVIYLTSPRK