AlfalfaGEDB | MS.gene062945

M. sativa cultivar XinJiangDaYe / MS.gene062945

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062945.t1	AES89295.1	97.8	93	2	0	1	93	1	93	2.00E-44	188

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062945.t1	P33079	72.0	93	26	0	1	93	1	93	2.8e-34	145.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062945.t1	G7JL20	97.8	93	2	0	1	93	1	93	1.5e-44	188.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene68165	MS.gene062945	PPI
MS.gene045361	MS.gene062945	PPI
MS.gene50675	MS.gene062945	PPI
MS.gene003591	MS.gene062945	PPI
MS.gene062979	MS.gene062945	PPI
MS.gene003590	MS.gene062945	PPI
MS.gene062943	MS.gene062945	PPI
MS.gene014668	MS.gene062945	PPI
MS.gene062945	MS.gene50764	PPI
MS.gene003608	MS.gene062945	PPI
MS.gene79888	MS.gene062945	PPI
MS.gene40326	MS.gene062945	PPI
MS.gene062945	MS.gene75672	PPI
MS.gene77527	MS.gene062945	PPI
MS.gene50654	MS.gene062945	PPI
MS.gene062945	MS.gene062974	PPI
MS.gene50676	MS.gene062945	PPI
MS.gene003614	MS.gene062945	PPI
MS.gene057818	MS.gene062945	PPI
MS.gene50652	MS.gene062945	PPI
MS.gene50766	MS.gene062945	PPI
MS.gene062945	MS.gene014670	PPI
MS.gene003594	MS.gene062945	PPI
MS.gene79889	MS.gene062945	PPI
MS.gene50677	MS.gene062945	PPI
MS.gene003625	MS.gene062945	PPI
MS.gene68759	MS.gene062945	PPI
MS.gene01764	MS.gene062945	PPI
MS.gene062945	MS.gene75679	PPI
MS.gene50763	MS.gene062945	PPI
MS.gene40325	MS.gene062945	PPI
MS.gene062945	MS.gene50684	PPI
MS.gene79885	MS.gene062945	PPI
MS.gene01358	MS.gene062945	PPI
MS.gene50659	MS.gene062945	PPI
MS.gene75675	MS.gene062945	PPI
MS.gene003583	MS.gene062945	PPI
MS.gene062945	MS.gene79886	PPI
MS.gene062945	MS.gene014671	PPI
MS.gene062945	MS.gene50765	PPI
MS.gene057790	MS.gene062945	PPI
MS.gene062952	MS.gene062945	PPI
MS.gene045363	MS.gene062945	PPI
MS.gene003624	MS.gene062945	PPI
MS.gene031199	MS.gene062945	PPI
MS.gene75314	MS.gene062945	PPI
MS.gene057797	MS.gene062945	PPI
MS.gene23370	MS.gene062945	PPI
MS.gene77529	MS.gene062945	PPI
MS.gene68761	MS.gene062945	PPI
MS.gene014667	MS.gene062945	PPI
MS.gene68760	MS.gene062945	PPI
MS.gene003596	MS.gene062945	PPI
MS.gene75676	MS.gene062945	PPI
MS.gene062945	MS.gene045367	PPI
MS.gene50665	MS.gene062945	PPI
MS.gene003586	MS.gene062945	PPI
MS.gene057778	MS.gene062945	PPI
MS.gene062988	MS.gene062945	PPI
MS.gene75673	MS.gene062945	PPI
MS.gene045366	MS.gene062945	PPI
MS.gene062945	MS.gene002380	PPI
MS.gene062963	MS.gene062945	PPI
MS.gene77528	MS.gene062945	PPI
MS.gene68164	MS.gene062945	PPI
MS.gene031198	MS.gene062945	PPI
MS.gene75674	MS.gene062945	PPI
MS.gene031200	MS.gene062945	PPI
MS.gene045365	MS.gene062945	PPI
MS.gene045364	MS.gene062945	PPI
MS.gene003602	MS.gene062945	PPI
MS.gene23372	MS.gene062945	PPI
MS.gene75316	MS.gene062945	PPI
MS.gene003627	MS.gene062945	PPI
MS.gene062945	MS.gene75315	PPI
MS.gene003577	MS.gene062945	PPI
MS.gene77524	MS.gene062945	PPI
MS.gene062984	MS.gene062945	PPI
MS.gene014222	MS.gene062945	PPI
MS.gene23371	MS.gene062945	PPI
MS.gene031201	MS.gene062945	PPI
MS.gene062951	MS.gene062945	PPI
MS.gene045362	MS.gene062945	PPI
MS.gene77523	MS.gene062945	PPI
MS.gene003587	MS.gene062945	PPI
MS.gene062945	MS.gene057808	PPI
MS.gene045368	MS.gene062945	PPI
MS.gene063112	MS.gene062945	PPI
MS.gene79891	MS.gene062945	PPI
MS.gene79890	MS.gene062945	PPI
MS.gene003615	MS.gene062945	PPI
MS.gene79887	MS.gene062945	PPI
MS.gene062973	MS.gene062945	PPI
MS.gene77526	MS.gene062945	PPI
MS.gene047517	MS.gene062945	PPI
MS.gene062945	MS.gene68163	PPI
MS.gene045360	MS.gene062945	PPI
MS.gene014669	MS.gene062945	PPI
MS.gene057801	MS.gene062945	PPI
MS.gene68162	MS.gene062945	PPI
MS.gene014223	MS.gene062945	PPI
MS.gene50687	MS.gene062945	PPI
MS.gene40327	MS.gene062945	PPI
MS.gene75677	MS.gene062945	PPI
MS.gene057795	MS.gene062945	PPI
MS.gene062945	MS.gene75678	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062945.t1	MTR_4g072220	97.849	93	2	0	1	93	1	93	1.60e-64	189
MS.gene062945.t1	MTR_4g072890	90.110	91	9	0	1	91	1	91	2.00e-58	174
MS.gene062945.t1	MTR_4g072260	88.172	93	11	0	1	93	1	93	4.25e-58	173
MS.gene062945.t1	MTR_4g072240	87.912	91	11	0	1	91	1	91	9.84e-58	172
MS.gene062945.t1	MTR_4g072300	86.813	91	12	0	1	91	1	91	2.76e-57	171
MS.gene062945.t1	MTR_4g072870	82.418	91	16	0	1	91	1	91	2.51e-52	159
MS.gene062945.t1	MTR_4g072310	66.667	93	31	0	1	93	1	93	3.88e-45	140
MS.gene062945.t1	MTR_3g110038	70.968	93	26	1	1	93	1	92	9.07e-44	137
MS.gene062945.t1	MTR_4g072370	69.231	91	25	1	1	91	1	88	1.46e-43	136
MS.gene062945.t1	MTR_3g084150	67.742	93	29	1	1	93	1	92	2.87e-43	135
MS.gene062945.t1	MTR_3g084240	68.817	93	28	1	1	93	1	92	3.46e-43	135
MS.gene062945.t1	MTR_4g072880	64.516	93	33	0	1	93	1	93	8.12e-43	134
MS.gene062945.t1	MTR_4g072500	66.667	93	30	1	1	93	1	92	9.39e-43	134
MS.gene062945.t1	MTR_3g084170	68.817	93	28	1	1	93	1	92	1.09e-42	134
MS.gene062945.t1	MTR_3g084180	66.667	93	30	1	1	93	1	92	1.75e-42	134
MS.gene062945.t1	MTR_4g072640	66.304	92	30	1	1	92	1	91	5.20e-42	132
MS.gene062945.t1	MTR_4g072250	65.591	93	31	1	1	93	1	92	5.93e-42	132
MS.gene062945.t1	MTR_8g461410	65.591	93	31	1	1	93	1	92	8.15e-42	132
MS.gene062945.t1	MTR_4g050700	65.591	93	32	0	1	93	1	93	2.06e-41	131
MS.gene062945.t1	MTR_2g012410	65.591	93	32	0	1	93	1	93	2.06e-41	131
MS.gene062945.t1	MTR_4g072270	63.441	93	34	0	1	93	1	93	4.60e-41	130
MS.gene062945.t1	MTR_4g072530	64.835	91	31	1	1	91	1	90	6.31e-41	130
MS.gene062945.t1	MTR_3g110032	64.516	93	33	0	1	93	1	93	7.13e-41	130
MS.gene062945.t1	MTR_4g072850	68.085	94	29	1	1	93	1	94	7.67e-41	130
MS.gene062945.t1	MTR_4g072480	64.516	93	32	1	1	93	1	92	8.16e-41	129
MS.gene062945.t1	MTR_4g072630	67.033	91	25	1	1	91	1	86	8.33e-41	129
MS.gene062945.t1	MTR_4g072330	67.033	91	27	1	1	91	1	88	1.13e-40	129
MS.gene062945.t1	MTR_4g072740	67.033	91	24	1	1	91	1	85	1.34e-40	129
MS.gene062945.t1	MTR_4g072570	64.516	93	32	1	1	93	1	92	1.35e-40	129
MS.gene062945.t1	MTR_3g117630	65.556	90	31	0	4	93	3	92	1.61e-40	129
MS.gene062945.t1	MTR_4g072230	63.441	93	32	1	1	93	1	91	1.69e-40	129
MS.gene062945.t1	MTR_4g072580	67.033	91	24	1	1	91	1	85	2.09e-40	128
MS.gene062945.t1	MTR_4g072730	63.736	91	32	1	1	91	1	90	2.36e-40	128
MS.gene062945.t1	MTR_3g084220	65.591	93	31	1	1	93	1	92	3.59e-40	128
MS.gene062945.t1	MTR_4g072830	65.591	93	29	1	1	93	1	90	5.98e-40	127
MS.gene062945.t1	MTR_3g110042	66.667	90	29	1	1	90	1	89	6.08e-40	127
MS.gene062945.t1	MTR_4g072610	65.934	91	24	1	1	91	1	84	1.03e-39	127
MS.gene062945.t1	MTR_4g072620	61.290	93	35	1	1	93	1	92	1.61e-39	126
MS.gene062945.t1	MTR_4g072280	80.000	75	15	0	1	75	1	75	1.67e-39	126
MS.gene062945.t1	MTR_4g072490	64.835	91	26	1	1	91	1	85	2.40e-39	125
MS.gene062945.t1	MTR_4g072680	61.290	93	35	1	1	93	1	92	5.50e-39	125
MS.gene062945.t1	MTR_4g072860	61.290	93	36	0	1	93	1	93	1.02e-38	124
MS.gene062945.t1	MTR_3g084250	65.591	93	31	1	1	93	1	92	4.18e-38	122
MS.gene062945.t1	MTR_4g072650	64.835	91	25	1	1	91	1	84	5.15e-38	122
MS.gene062945.t1	MTR_4g072470	63.736	91	27	1	1	91	1	85	6.10e-38	122
MS.gene062945.t1	MTR_4g072460	60.215	93	36	1	1	93	1	92	6.35e-38	122
MS.gene062945.t1	MTR_3g084260	62.637	91	34	0	1	91	1	91	7.87e-38	122
MS.gene062945.t1	MTR_4g072660	61.290	93	30	1	1	93	1	87	2.46e-37	120
MS.gene062945.t1	MTR_4g072820	64.444	90	26	1	1	90	1	84	6.49e-37	119
MS.gene062945.t1	MTR_4g072510	63.736	91	28	1	1	91	1	86	6.64e-37	119
MS.gene062945.t1	MTR_4g072600	63.736	91	27	1	1	91	1	85	1.13e-36	119
MS.gene062945.t1	MTR_4g072670	61.538	91	30	1	1	91	1	86	1.40e-36	119
MS.gene062945.t1	MTR_4g072540	62.637	91	29	1	1	91	1	86	2.34e-36	118
MS.gene062945.t1	MTR_4g072720	61.538	91	30	1	1	91	1	86	4.94e-36	117
MS.gene062945.t1	MTR_3g084190	68.817	93	28	1	1	93	1	92	8.53e-36	117
MS.gene062945.t1	MTR_4g072465	59.341	91	32	1	1	91	1	86	9.33e-36	117
MS.gene062945.t1	MTR_4g072940	70.833	72	21	0	22	93	53	124	1.18e-35	117
MS.gene062945.t1	MTR_4g072590	68.293	82	26	0	10	91	4	85	1.91e-35	115
MS.gene062945.t1	MTR_8g461420	66.667	93	30	1	1	93	1	92	3.55e-35	115
MS.gene062945.t1	MTR_3g084160	66.667	93	30	1	1	93	1	92	5.38e-35	115
MS.gene062945.t1	MTR_3g084210	66.667	93	30	1	1	93	1	92	6.77e-35	114
MS.gene062945.t1	MTR_5g008360	65.789	76	26	0	18	93	8	83	8.94e-35	114
MS.gene062945.t1	MTR_3g084230	65.591	93	31	1	1	93	1	92	2.00e-34	113
MS.gene062945.t1	MTR_5g008350	67.500	80	20	1	1	80	1	74	2.19e-34	113
MS.gene062945.t1	MTR_5g008370	74.627	67	17	0	25	91	24	90	8.08e-34	113
MS.gene062945.t1	MTR_4g072690	63.736	91	27	1	1	91	1	85	1.33e-33	111
MS.gene062945.t1	MTR_4g072550	67.123	73	24	0	21	93	31	103	2.12e-33	111
MS.gene062945.t1	MTR_3g110045	69.444	72	22	0	22	93	80	151	5.99e-33	111
MS.gene062945.t1	MTR_3g084200	68.493	73	22	1	1	73	1	72	2.48e-32	108
MS.gene062945.t1	MTR_4g072380	62.500	88	28	1	1	88	1	83	3.56e-32	107
MS.gene062945.t1	MTR_4g072450	60.440	91	30	1	1	91	1	85	4.68e-31	105
MS.gene062945.t1	MTR_4g072770	69.231	65	20	0	26	90	15	79	2.42e-30	103
MS.gene062945.t1	MTR_4g072910	64.179	67	24	0	25	91	34	100	3.76e-29	100
MS.gene062945.t1	MTR_3g117640	65.672	67	22	1	25	90	33	99	5.15e-29	100
MS.gene062945.t1	MTR_4g072980	51.087	92	43	2	1	90	1	92	5.19e-29	100
MS.gene062945.t1	MTR_4g072560	62.121	66	24	1	26	90	32	97	1.98e-28	98.6
MS.gene062945.t1	MTR_4g072290	50.538	93	32	1	1	93	1	79	5.35e-27	94.4
MS.gene062945.t1	MTR_4g072750	64.000	75	24	2	1	73	1	74	6.52e-27	94.4
MS.gene062945.t1	MTR_4g072930	52.439	82	35	1	14	91	29	110	8.58e-26	92.4
MS.gene062945.t1	MTR_3g113310	56.716	67	28	1	24	90	40	105	5.39e-24	87.8
MS.gene062945.t1	MTR_3g110035	63.636	66	24	0	28	93	73	138	1.25e-23	87.8
MS.gene062945.t1	MTR_3g117610	60.000	65	25	1	24	88	43	106	3.95e-23	85.9
MS.gene062945.t1	MTR_4g072190	50.602	83	37	2	8	90	21	99	9.43e-23	84.3
MS.gene062945.t1	MTR_6g077850	49.254	67	34	0	25	91	33	99	1.94e-21	81.3
MS.gene062945.t1	MTR_5g021820	50.000	84	38	3	10	90	21	103	5.23e-21	80.1
MS.gene062945.t1	MTR_8g076040	48.810	84	39	2	8	88	20	102	3.14e-20	78.2
MS.gene062945.t1	MTR_8g461400	47.312	93	22	2	1	93	1	66	1.57e-19	75.1
MS.gene062945.t1	MTR_2g043960	59.677	62	24	1	25	86	75	135	1.97e-19	77.8
MS.gene062945.t1	MTR_4g124750	48.837	86	42	2	4	88	46	130	2.53e-19	77.4
MS.gene062945.t1	MTR_4g005310	46.753	77	34	2	17	86	47	123	1.11e-18	75.5
MS.gene062945.t1	MTR_4g025830	48.611	72	33	2	23	91	76	146	3.86e-18	74.3
MS.gene062945.t1	MTR_4g072840	47.778	90	16	3	1	90	1	59	7.55e-17	68.2
MS.gene062945.t1	MTR_0388s0020	40.909	88	47	3	7	91	57	142	1.33e-16	70.1
MS.gene062945.t1	MTR_1g009150	48.571	70	35	1	17	86	62	130	2.09e-16	70.1
MS.gene062945.t1	MTR_3g092220	37.647	85	50	2	9	91	16	99	2.33e-16	68.6
MS.gene062945.t1	MTR_4g072160	43.373	83	46	1	4	86	15	96	2.49e-16	69.3
MS.gene062945.t1	MTR_7g118010	50.794	63	28	2	26	86	23	84	5.19e-16	67.4
MS.gene062945.t1	MTR_4g005320	49.180	61	30	1	26	86	70	129	5.93e-15	66.2
MS.gene062945.t1	MTR_8g026730	47.619	63	30	2	26	86	27	88	9.20e-15	64.3
MS.gene062945.t1	MTR_1g094750	44.118	68	37	1	25	92	49	115	1.77e-14	63.9
MS.gene062945.t1	MTR_3g109160	43.902	82	45	1	5	86	48	128	4.33e-14	63.9
MS.gene062945.t1	MTR_1g024085	43.210	81	34	2	4	84	26	94	4.47e-14	63.5
MS.gene062945.t1	MTR_1g061570	48.387	62	31	1	25	86	18	78	9.55e-14	62.0
MS.gene062945.t1	MTR_3g097120	39.024	82	41	2	19	92	2	82	4.49e-13	60.1
MS.gene062945.t1	MTR_3g105900	66.667	36	12	0	25	60	1171	1206	4.44e-12	60.5
MS.gene062945.t1	MTR_8g461210	45.000	60	32	1	25	84	34	92	5.62e-12	57.4
MS.gene062945.t1	MTR_7g405740	38.889	72	43	1	12	83	53	123	1.69e-11	57.0
MS.gene062945.t1	MTR_2g066830	37.681	69	41	2	10	78	43	109	1.85e-11	56.6
MS.gene062945.t1	MTR_4g021810	46.774	62	31	2	26	86	26	86	2.22e-11	55.5
MS.gene062945.t1	MTR_7g101740	42.188	64	36	1	25	88	39	101	3.74e-11	55.1
MS.gene062945.t1	MTR_1g059770	36.923	65	40	1	26	90	49	112	5.55e-11	55.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062945.t1	AT5G18080	62.667	75	27	1	17	90	15	89	1.55e-31	106
MS.gene062945.t1	AT4G38840	70.588	68	19	1	25	91	32	99	1.58e-31	106
MS.gene062945.t1	AT2G21210	51.579	95	42	2	1	91	1	95	4.79e-31	105
MS.gene062945.t1	AT5G18020	60.000	75	29	1	17	90	15	89	5.27e-31	105
MS.gene062945.t1	AT5G18060	69.231	65	19	1	27	90	25	89	1.48e-30	103
MS.gene062945.t1	AT2G21210	51.579	95	42	2	1	91	68	162	2.87e-30	105
MS.gene062945.t1	AT5G18050	66.667	66	21	1	26	90	24	89	3.48e-30	102
MS.gene062945.t1	AT5G18030	66.667	66	21	1	26	90	22	87	8.92e-30	102
MS.gene062945.t1	AT2G21200	62.500	72	26	1	20	90	15	86	1.03e-29	101
MS.gene062945.t1	AT5G18010	58.667	75	30	1	17	90	15	89	1.46e-29	101
MS.gene062945.t1	AT4G38825	59.459	74	29	1	18	90	15	88	1.07e-28	99.4
MS.gene062945.t1	AT3G03820	55.435	92	35	2	2	90	6	94	1.24e-28	99.4
MS.gene062945.t1	AT4G34770	66.667	69	21	1	25	91	34	102	2.58e-28	98.6
MS.gene062945.t1	AT4G34800	50.562	89	36	2	1	86	1	84	9.69e-27	94.4
MS.gene062945.t1	AT3G03840	59.155	71	27	1	22	90	23	93	1.16e-26	94.4
MS.gene062945.t1	AT3G03850	55.172	87	32	2	6	90	10	91	1.65e-26	94.0
MS.gene062945.t1	AT4G38850	58.824	68	25	1	26	90	21	88	4.50e-26	92.4
MS.gene062945.t1	AT3G03830	59.420	69	25	1	25	90	23	91	2.31e-25	90.9
MS.gene062945.t1	AT4G34810	57.746	71	25	2	25	90	47	117	3.93e-25	90.9
MS.gene062945.t1	AT4G13790	52.055	73	33	1	20	90	19	91	4.86e-25	90.1
MS.gene062945.t1	AT4G34790	58.462	65	25	1	26	88	39	103	5.46e-23	85.5
MS.gene062945.t1	AT1G75580	50.000	90	37	2	8	90	19	107	1.43e-22	84.3
MS.gene062945.t1	AT4G38860	50.000	86	40	1	8	90	19	104	1.52e-22	84.0
MS.gene062945.t1	AT4G34760	56.716	67	28	1	24	90	41	106	3.79e-22	83.2
MS.gene062945.t1	AT2G21220	47.674	86	41	2	8	90	19	103	8.38e-22	82.0
MS.gene062945.t1	AT4G34780	54.930	71	29	2	24	91	26	96	2.33e-21	81.3
MS.gene062945.t1	AT2G16580	58.462	65	26	1	24	88	42	105	3.27e-21	80.9
MS.gene062945.t1	AT2G18010	52.778	72	33	1	17	88	39	109	2.58e-20	78.6
MS.gene062945.t1	AT1G19830	53.731	67	30	1	24	90	46	111	3.11e-20	78.6
MS.gene062945.t1	AT3G43120	58.065	62	25	1	25	86	78	138	5.17e-20	79.3
MS.gene062945.t1	AT4G36110	49.315	73	36	1	16	88	30	101	2.38e-19	75.9
MS.gene062945.t1	AT5G20810	59.677	62	24	1	25	86	78	138	6.21e-19	76.6
MS.gene062945.t1	AT5G20810	59.677	62	24	1	25	86	78	138	1.27e-18	76.3
MS.gene062945.t1	AT3G20220	49.231	65	31	2	26	89	47	110	1.76e-15	66.6
MS.gene062945.t1	AT5G66260	50.000	66	32	1	26	91	34	98	1.76e-15	65.9
MS.gene062945.t1	AT2G45210	39.474	76	42	2	19	91	72	146	2.07e-15	67.4
MS.gene062945.t1	AT3G60690	44.118	68	34	2	26	90	88	154	9.70e-15	65.9
MS.gene062945.t1	AT1G75590	47.222	72	33	2	13	84	33	99	1.51e-14	65.1
MS.gene062945.t1	AT4G12410	44.928	69	34	2	26	91	76	143	4.71e-14	63.9
MS.gene062945.t1	AT2G46690	41.892	74	39	2	18	88	16	88	8.48e-14	62.4
MS.gene062945.t1	AT1G19840	45.333	75	36	2	10	84	29	98	1.18e-13	62.8
MS.gene062945.t1	AT5G10990	44.000	75	37	2	10	84	29	98	1.37e-13	62.4
MS.gene062945.t1	AT3G51200	47.619	63	31	2	25	86	38	99	1.72e-13	61.2
MS.gene062945.t1	AT4G31320	45.455	66	35	1	21	86	75	139	1.91e-13	62.8
MS.gene062945.t1	AT2G24400	46.269	67	35	1	26	92	64	129	4.06e-13	61.6
MS.gene062945.t1	AT4G00880	50.000	70	29	3	25	89	27	95	7.20e-13	59.7
MS.gene062945.t1	AT4G34750	40.625	64	37	1	25	88	36	98	9.34e-13	60.1
MS.gene062945.t1	AT4G34750	40.625	64	37	1	25	88	36	98	9.34e-13	60.1
MS.gene062945.t1	AT4G09530	39.726	73	41	2	17	86	19	91	1.28e-12	58.9
MS.gene062945.t1	AT4G22620	36.145	83	49	2	12	91	65	146	1.29e-12	60.1
MS.gene062945.t1	AT5G53590	38.356	73	39	2	25	92	45	116	1.67e-12	59.3
MS.gene062945.t1	AT2G37030	41.270	63	36	1	25	87	48	109	5.33e-12	57.8
MS.gene062945.t1	AT3G61900	44.444	63	31	2	25	84	29	90	1.88e-11	56.6
MS.gene062945.t1	AT3G12830	40.789	76	40	2	15	90	43	113	2.00e-11	56.2
MS.gene062945.t1	AT3G09870	43.750	64	33	2	25	86	44	106	2.17e-11	55.8

Find 19 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGTAGATTCTTGTGTTT+TGG	0.198943	4.2:-35647875	None:intergenic
AATCAAGCAGAAGAAGAATT+TGG	0.271748	4.2:+35648006	MS.gene062945:CDS
TCAAGCGAGATGTGAGGTTT+TGG	0.324425	4.2:-35648080	None:intergenic
GTAATTCTTGAAATGATGAT+TGG	0.400311	4.2:-35647981	None:intergenic
TAGACTGCAAGATAGCCTTT+TGG	0.407054	4.2:-35647910	None:intergenic
GATTGGTTCAAATATGATAC+TGG	0.417426	4.2:-35647964	None:intergenic
ATTTGGATATGATCATCCTA+TGG	0.456415	4.2:+35648023	MS.gene062945:CDS
GGCTATCTTGCAGTCTATGT+TGG	0.480274	4.2:+35647916	MS.gene062945:CDS
AAGGGACTTGAAGTCCCAAA+AGG	0.558728	4.2:+35647895	MS.gene062945:CDS
TGGAATTCATCCTCGCTGCA+AGG	0.585771	4.2:-35648060	None:intergenic
TTTGGATATGATCATCCTAT+GGG	0.586077	4.2:+35648024	MS.gene062945:CDS
TTCTGATAAGCTTTGCTATG+CGG	0.610874	4.2:-35647840	None:intergenic
GGATATGATCATCCTATGGG+TGG	0.645721	4.2:+35648027	MS.gene062945:CDS
CAAAACACAAGAATCTACCA+AGG	0.648832	4.2:+35647876	MS.gene062945:CDS
GGAATTGTGAGACCACCCAT+AGG	0.657747	4.2:-35648039	None:intergenic
GTTCACTCAAGCGAGATGTG+AGG	0.677051	4.2:-35648086	None:intergenic
AAAACACAAGAATCTACCAA+GGG	0.681268	4.2:+35647877	MS.gene062945:CDS
ATGTTGGAGACAGAATGAGA+CGG	0.718062	4.2:+35647932	MS.gene062945:CDS
TCTCACAATTCCTTGCAGCG+AGG	0.736678	4.2:+35648050	MS.gene062945:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GTAATTCTTGAAATGATGAT+TGG	-	chr4.2:35647984-35648003	None:intergenic	25.0%
	AAAACACAAGAATCTACCAA+GGG	+	chr4.2:35647877-35647896	MS.gene062945:CDS	30.0%
	AATCAAGCAGAAGAAGAATT+TGG	+	chr4.2:35648006-35648025	MS.gene062945:CDS	30.0%
	ATTTGGATATGATCATCCTA+TGG	+	chr4.2:35648023-35648042	MS.gene062945:CDS	30.0%
	TTTGGATATGATCATCCTAT+GGG	+	chr4.2:35648024-35648043	MS.gene062945:CDS	30.0%
!	GATTGGTTCAAATATGATAC+TGG	-	chr4.2:35647967-35647986	None:intergenic	30.0%
!!!	TCTTGTGTTTTGGAAAATGA+TGG	-	chr4.2:35647868-35647887	None:intergenic	30.0%
	CAAAACACAAGAATCTACCA+AGG	+	chr4.2:35647876-35647895	MS.gene062945:CDS	35.0%
!	CTTGGTAGATTCTTGTGTTT+TGG	-	chr4.2:35647878-35647897	None:intergenic	35.0%
!	TTCTGATAAGCTTTGCTATG+CGG	-	chr4.2:35647843-35647862	None:intergenic	35.0%
	ATGTTGGAGACAGAATGAGA+CGG	+	chr4.2:35647932-35647951	MS.gene062945:CDS	40.0%
!	AGACTGCAAGATAGCCTTTT+GGG	-	chr4.2:35647912-35647931	None:intergenic	40.0%
!	TAGACTGCAAGATAGCCTTT+TGG	-	chr4.2:35647913-35647932	None:intergenic	40.0%
	AAGGGACTTGAAGTCCCAAA+AGG	+	chr4.2:35647895-35647914	MS.gene062945:CDS	45.0%
	GGATATGATCATCCTATGGG+TGG	+	chr4.2:35648027-35648046	MS.gene062945:CDS	45.0%
	GGCTATCTTGCAGTCTATGT+TGG	+	chr4.2:35647916-35647935	MS.gene062945:CDS	45.0%
!	TCAAGCGAGATGTGAGGTTT+TGG	-	chr4.2:35648083-35648102	None:intergenic	45.0%
!!!	TTTTGGGACTTCAAGTCCCT+TGG	-	chr4.2:35647896-35647915	None:intergenic	45.0%
	GGAATTGTGAGACCACCCAT+AGG	-	chr4.2:35648042-35648061	None:intergenic	50.0%
	GTTCACTCAAGCGAGATGTG+AGG	-	chr4.2:35648089-35648108	None:intergenic	50.0%
	TCTCACAATTCCTTGCAGCG+AGG	+	chr4.2:35648050-35648069	MS.gene062945:CDS	50.0%
	TGGAATTCATCCTCGCTGCA+AGG	-	chr4.2:35648063-35648082	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35647832	35648113	35647832	ID=MS.gene062945
chr4.2	mRNA	35647832	35648113	35647832	ID=MS.gene062945.t1;Parent=MS.gene062945
chr4.2	exon	35647832	35648113	35647832	ID=MS.gene062945.t1.exon1;Parent=MS.gene062945.t1
chr4.2	CDS	35647832	35648113	35647832	ID=cds.MS.gene062945.t1;Parent=MS.gene062945.t1

Gene Sequence	>MS.gene062945 ATGGGTTTCCGCATAGCAAAGCTTATCAGAATGCCATCATTTTCCAAAACACAAGAATCTACCAAGGGACTTGAAGTCCCAAAAGGCTATCTTGCAGTCTATGTTGGAGACAGAATGAGACGGTTTATGATTCCAGTATCATATTTGAACCAATCATCATTTCAAGAATTACTAAATCAAGCAGAAGAAGAATTTGGATATGATCATCCTATGGGTGGTCTCACAATTCCTTGCAGCGAGGATGAATTCCAAAACCTCACATCTCGCTTGAGTGAACTGTAA
Protein sequence	>MS.gene062945.t1 MGFRIAKLIRMPSFSKTQESTKGLEVPKGYLAVYVGDRMRRFMIPVSYLNQSSFQELLNQAEEEFGYDHPMGGLTIPCSEDEFQNLTSRLSEL