AlfalfaGEDB | MS.gene062980

M. sativa cultivar XinJiangDaYe / MS.gene062980

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062980.t1	RHN53459.1	93.5	92	6	0	3	94	5	96	1.80E-40	174.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062980.t1	P33083	78.3	92	18	1	1	92	1	90	4.1e-33	141.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062980.t1	A0A396HJG4	93.5	92	6	0	3	94	5	96	1.3e-40	174.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003577	MS.gene062980	PPI
MS.gene003586	MS.gene062980	PPI
MS.gene003587	MS.gene062980	PPI
MS.gene003590	MS.gene062980	PPI
MS.gene003591	MS.gene062980	PPI
MS.gene003594	MS.gene062980	PPI
MS.gene003602	MS.gene062980	PPI
MS.gene003608	MS.gene062980	PPI
MS.gene003615	MS.gene062980	PPI
MS.gene003624	MS.gene062980	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062980.t1	MTR_4g072500	85.106	94	12	1	1	94	1	92	1.37e-55	167
MS.gene062980.t1	MTR_4g072530	83.696	92	13	1	1	92	1	90	3.40e-53	160
MS.gene062980.t1	MTR_4g072480	79.787	94	17	1	1	94	1	92	4.00e-52	158
MS.gene062980.t1	MTR_4g072640	82.609	92	14	1	1	92	1	90	8.07e-52	157
MS.gene062980.t1	MTR_4g072620	77.660	94	19	1	1	94	1	92	3.40e-51	155
MS.gene062980.t1	MTR_4g072730	77.419	93	19	1	1	93	1	91	1.03e-50	154
MS.gene062980.t1	MTR_4g072680	78.723	94	18	1	1	94	1	92	3.05e-50	153
MS.gene062980.t1	MTR_4g072570	79.787	94	17	1	1	94	1	92	4.58e-50	153
MS.gene062980.t1	MTR_4g072460	76.596	94	20	1	1	94	1	92	1.23e-48	149
MS.gene062980.t1	MTR_3g084150	77.660	94	19	1	1	94	1	92	1.77e-48	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062980.t1	AT5G18020	65.753	73	24	1	18	89	15	87	2.78e-32	108
MS.gene062980.t1	AT4G34770	62.069	87	31	1	9	93	17	103	3.75e-32	108
MS.gene062980.t1	AT5G18060	64.474	76	26	1	18	92	15	90	5.22e-32	107
MS.gene062980.t1	AT4G38840	70.588	68	19	1	26	92	32	99	8.14e-32	107
MS.gene062980.t1	AT5G18080	63.158	76	27	1	18	92	15	90	9.75e-32	107
MS.gene062980.t1	AT4G38825	55.056	89	39	1	5	92	1	89	2.04e-31	106
MS.gene062980.t1	AT5G18050	61.842	76	28	1	18	92	15	90	3.22e-31	105
MS.gene062980.t1	AT5G18030	58.333	84	34	1	10	92	5	88	4.04e-31	105
MS.gene062980.t1	AT4G34800	62.821	78	26	1	10	84	4	81	6.17e-31	105
MS.gene062980.t1	AT2G21200	66.197	71	23	1	22	91	16	86	1.26e-30	103

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Find 26 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCAGAAGTACCAA+AGG	0.569679	4.2:-35431144	MS.gene062980:CDS
AAATCATCAGAAGTACCAAA+GGG	0.583576	4.2:-35431143	MS.gene062980:CDS
AATATGTTGGAAGGCATCTT+CGG	0.510466	4.2:+35430971	None:intergenic
AGTCAAGCTGAGGAAGAGTT+TGG	0.376098	4.2:-35431032	MS.gene062980:CDS
ATACTTGTTGAGTCAAGCTG+AGG	0.622437	4.2:-35431042	MS.gene062980:CDS
ATATTACCTCTTGCTTGAAT+GGG	0.458776	4.2:-35430953	MS.gene062980:CDS
ATGTTGGCGAGAAAATGAAG+CGG	0.743921	4.2:-35431106	MS.gene062980:CDS
CATATTACCTCTTGCTTGAA+TGG	0.296831	4.2:-35430954	MS.gene062980:CDS
CCCGTCGAATAACGTTTAAA+CGG	0.487929	4.2:+35431201	None:intergenic
CCGTTTAAACGTTATTCGAC+GGG	0.508828	4.2:-35431201	MS.gene062980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTACCTCTTGCTTGAAT+GGG	-	chr4.2:35431203-35431222	MS.gene062980:CDS	30.0%
TTTGGATATGATCATCCTAT+GGG	-	chr4.2:35431142-35431161	MS.gene062980:CDS	30.0%
CATATTACCTCTTGCTTGAA+TGG	-	chr4.2:35431202-35431221	MS.gene062980:CDS	35.0%
GTTTGGATATGATCATCCTA+TGG	-	chr4.2:35431141-35431160	MS.gene062980:CDS	35.0%
TCAAGCAAGAGGTAATATGT+TGG	+	chr4.2:35431201-35431220	None:intergenic	35.0%
TCCGTTTAAACGTTATTCGA+CGG	-	chr4.2:35430954-35430973	MS.gene062980:CDS	35.0%
ATGTTGGCGAGAAAATGAAG+CGG	-	chr4.2:35431050-35431069	MS.gene062980:CDS	40.0%
CCCGTCGAATAACGTTTAAA+CGG	+	chr4.2:35430958-35430977	None:intergenic	40.0%
CCGTTTAAACGTTATTCGAC+GGG	-	chr4.2:35430955-35430974	MS.gene062980:CDS	40.0%
GCAAGAGGTAATATGTTGGA+AGG	+	chr4.2:35431197-35431216	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35430947	35431231	35430947	ID=MS.gene062980
chr4.2	mRNA	35430947	35431231	35430947	ID=MS.gene062980.t1;Parent=MS.gene062980
chr4.2	exon	35430947	35431231	35430947	ID=MS.gene062980.t1.exon1;Parent=MS.gene062980.t1
chr4.2	CDS	35430947	35431231	35430947	ID=cds.MS.gene062980.t1;Parent=MS.gene062980.t1

Gene Sequence	>MS.gene062980 ATGGGTTTCCGTTTAAACGTTATTCGACGGGCATCAGTAAGTGCTACTGCAAGCCAAGCAGCTTCAAAATCATCAGAAGTACCAAAGGGATATCTTGCAGTGTATGTTGGCGAGAAAATGAAGCGGTTTGTGATCCCAATATCATACTTGAACAAACCATCGTTTCAATACTTGTTGAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCTATGGGTGGCCTCACCATTCCTTGCACCGAAGATGCCTTCCAACATATTACCTCTTGCTTGAATGGGCTATGA
Protein sequence	>MS.gene062980.t1 MGFRLNVIRRASVSATASQAASKSSEVPKGYLAVYVGEKMKRFVIPISYLNKPSFQYLLSQAEEEFGYDHPMGGLTIPCTEDAFQHITSCLNGL