AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062989.t1 MTR_4g072220 91.398 93 8 0 1 93 1 93 2.40e-58 174
MS.gene062989.t1 MTR_4g072300 85.714 91 13 0 1 91 1 91 8.14e-55 165
MS.gene062989.t1 MTR_4g072890 85.714 91 13 0 1 91 1 91 3.47e-54 163
MS.gene062989.t1 MTR_4g072260 83.871 93 15 0 1 93 1 93 7.28e-54 162
MS.gene062989.t1 MTR_4g072240 84.615 91 14 0 1 91 1 91 1.16e-53 162
MS.gene062989.t1 MTR_4g072870 80.220 91 18 0 1 91 1 91 1.61e-49 151
MS.gene062989.t1 MTR_4g072280 82.667 75 13 0 1 75 1 75 2.04e-42 133
MS.gene062989.t1 MTR_4g072530 67.033 91 29 1 1 91 1 90 3.98e-41 130
MS.gene062989.t1 MTR_4g072500 66.667 93 30 1 1 93 1 92 7.89e-41 129
MS.gene062989.t1 MTR_4g072310 63.441 93 34 0 1 93 1 93 3.57e-40 128
MS.gene062989.t1 MTR_4g072640 66.304 92 30 1 1 92 1 91 3.96e-40 128
MS.gene062989.t1 MTR_4g072830 67.033 91 27 1 1 91 1 88 1.38e-39 126
MS.gene062989.t1 MTR_3g110038 67.742 93 29 1 1 93 1 92 2.67e-39 125
MS.gene062989.t1 MTR_3g084150 65.591 93 31 1 1 93 1 92 3.36e-39 125
MS.gene062989.t1 MTR_3g084240 66.667 93 30 1 1 93 1 92 3.51e-39 125
MS.gene062989.t1 MTR_4g072370 64.835 91 29 1 1 91 1 88 6.82e-39 124
MS.gene062989.t1 MTR_3g084250 66.667 93 30 1 1 93 1 92 1.46e-38 124
MS.gene062989.t1 MTR_3g084170 66.667 93 30 1 1 93 1 92 1.49e-38 124
MS.gene062989.t1 MTR_3g110042 67.778 90 28 1 1 90 1 89 1.96e-38 124
MS.gene062989.t1 MTR_4g072570 64.516 93 32 1 1 93 1 92 2.12e-38 123
MS.gene062989.t1 MTR_3g084180 64.516 93 32 1 1 93 1 92 2.67e-38 123
MS.gene062989.t1 MTR_4g072330 64.835 91 29 1 1 91 1 88 3.46e-38 123
MS.gene062989.t1 MTR_4g072880 62.637 91 34 0 1 91 1 91 8.41e-38 122
MS.gene062989.t1 MTR_8g461410 63.441 93 33 1 1 93 1 92 9.11e-38 122
MS.gene062989.t1 MTR_4g072580 64.835 91 26 1 1 91 1 85 1.00e-37 122
MS.gene062989.t1 MTR_4g072230 62.366 93 33 1 1 93 1 91 1.13e-37 122
MS.gene062989.t1 MTR_3g110032 63.441 93 34 0 1 93 1 93 1.22e-37 121
MS.gene062989.t1 MTR_3g117630 63.333 90 33 0 4 93 3 92 1.27e-37 121
MS.gene062989.t1 MTR_4g072250 64.835 91 31 1 1 91 1 90 1.31e-37 121
MS.gene062989.t1 MTR_4g050700 63.441 93 34 0 1 93 1 93 2.63e-37 120
MS.gene062989.t1 MTR_2g012410 63.441 93 34 0 1 93 1 93 2.63e-37 120
MS.gene062989.t1 MTR_3g084220 64.516 93 32 1 1 93 1 92 6.85e-37 119
MS.gene062989.t1 MTR_4g072740 64.835 91 26 1 1 91 1 85 2.40e-36 118
MS.gene062989.t1 MTR_4g072630 64.835 91 27 1 1 91 1 86 2.76e-36 118
MS.gene062989.t1 MTR_4g072820 69.136 81 25 0 10 90 4 84 3.01e-36 118
MS.gene062989.t1 MTR_3g084260 62.637 91 34 0 1 91 1 91 3.90e-36 118
MS.gene062989.t1 MTR_4g072850 65.957 94 31 1 1 93 1 94 5.06e-36 117
MS.gene062989.t1 MTR_4g072600 63.736 91 27 1 1 91 1 85 5.67e-36 117
MS.gene062989.t1 MTR_4g072480 61.290 93 35 1 1 93 1 92 8.81e-36 117
MS.gene062989.t1 MTR_4g072860 60.215 93 37 0 1 93 1 93 2.28e-35 116
MS.gene062989.t1 MTR_8g461420 67.742 93 29 1 1 93 1 92 3.18e-35 115
MS.gene062989.t1 MTR_4g072490 62.637 91 28 1 1 91 1 85 3.85e-35 115
MS.gene062989.t1 MTR_4g072270 59.140 93 38 0 1 93 1 93 4.50e-35 115
MS.gene062989.t1 MTR_3g084190 68.817 93 28 1 1 93 1 92 5.94e-35 115
MS.gene062989.t1 MTR_3g084210 67.742 93 29 1 1 93 1 92 6.48e-35 115
MS.gene062989.t1 MTR_3g084230 66.667 93 30 1 1 93 1 92 1.59e-34 114
MS.gene062989.t1 MTR_4g072610 69.737 76 23 0 16 91 9 84 1.65e-34 113
MS.gene062989.t1 MTR_4g072730 58.242 91 37 1 1 91 1 90 1.90e-34 113
MS.gene062989.t1 MTR_4g072680 59.140 93 37 1 1 93 1 92 1.90e-34 113
MS.gene062989.t1 MTR_4g072620 58.065 93 38 1 1 93 1 92 2.61e-34 113
MS.gene062989.t1 MTR_3g084160 66.667 93 30 1 1 93 1 92 2.85e-34 113
MS.gene062989.t1 MTR_4g072470 64.634 82 29 0 10 91 4 85 3.85e-34 112
MS.gene062989.t1 MTR_3g110045 72.222 72 20 0 22 93 80 151 7.71e-34 114
MS.gene062989.t1 MTR_4g072460 58.065 93 38 1 1 93 1 92 3.50e-33 110
MS.gene062989.t1 MTR_4g072940 70.833 72 21 0 22 93 53 124 3.89e-33 111
MS.gene062989.t1 MTR_4g072650 61.538 91 28 1 1 91 1 84 4.01e-33 110
MS.gene062989.t1 MTR_4g072540 60.440 91 31 1 1 91 1 86 8.82e-33 109
MS.gene062989.t1 MTR_4g072465 59.341 91 32 1 1 91 1 86 1.49e-32 108
MS.gene062989.t1 MTR_4g072510 60.440 91 31 1 1 91 1 86 2.53e-32 108
MS.gene062989.t1 MTR_4g072670 70.000 70 21 0 22 91 17 86 4.52e-32 107
MS.gene062989.t1 MTR_4g072660 56.989 93 34 1 1 93 1 87 1.71e-31 106
MS.gene062989.t1 MTR_4g072720 59.341 91 32 1 1 91 1 86 1.90e-31 105
MS.gene062989.t1 MTR_5g008350 67.606 71 23 0 10 80 4 74 1.22e-30 103
MS.gene062989.t1 MTR_4g072590 64.634 82 29 0 10 91 4 85 1.74e-30 103
MS.gene062989.t1 MTR_4g072380 61.364 88 29 1 1 88 1 83 2.39e-30 103
MS.gene062989.t1 MTR_5g008360 63.158 76 28 0 18 93 8 83 4.32e-30 102
MS.gene062989.t1 MTR_3g084200 67.123 73 23 1 1 73 1 72 7.85e-30 102
MS.gene062989.t1 MTR_4g072450 64.634 82 29 0 10 91 4 85 1.72e-29 100
MS.gene062989.t1 MTR_4g072910 65.672 67 23 0 25 91 34 100 1.91e-29 101
MS.gene062989.t1 MTR_4g072690 64.634 82 29 0 10 91 4 85 1.94e-29 100
MS.gene062989.t1 MTR_5g008370 70.149 67 20 0 25 91 24 90 2.75e-29 102
MS.gene062989.t1 MTR_4g072770 69.697 66 20 0 26 91 15 80 2.84e-29 100
MS.gene062989.t1 MTR_4g072550 63.014 73 27 0 21 93 31 103 1.16e-28 99.4
MS.gene062989.t1 MTR_4g072980 52.174 92 42 2 1 90 1 92 2.65e-28 98.2
MS.gene062989.t1 MTR_3g117640 65.672 67 22 1 25 90 33 99 3.88e-27 95.5
MS.gene062989.t1 MTR_4g072750 64.000 75 24 2 1 73 1 74 5.05e-26 92.4
MS.gene062989.t1 MTR_4g072560 61.194 67 25 1 25 90 31 97 5.79e-26 92.4
MS.gene062989.t1 MTR_4g072930 52.439 82 35 1 14 91 29 110 1.91e-25 91.7
MS.gene062989.t1 MTR_3g110035 62.121 66 25 0 28 93 73 138 1.93e-23 87.4
MS.gene062989.t1 MTR_4g072290 48.387 93 34 1 1 93 1 79 3.97e-23 84.7
MS.gene062989.t1 MTR_3g113310 53.731 67 30 1 24 90 40 105 2.93e-21 80.9
MS.gene062989.t1 MTR_3g117610 56.923 65 27 1 24 88 43 106 5.34e-21 80.1
MS.gene062989.t1 MTR_6g077850 49.254 67 34 0 25 91 33 99 3.62e-20 77.8
MS.gene062989.t1 MTR_4g072190 48.193 83 39 2 8 90 21 99 8.29e-20 77.0
MS.gene062989.t1 MTR_5g021820 48.810 84 39 3 10 90 21 103 2.20e-19 75.9
MS.gene062989.t1 MTR_4g124750 51.316 76 35 2 4 78 46 120 3.74e-19 76.6
MS.gene062989.t1 MTR_4g072160 47.500 80 41 1 4 83 15 93 4.00e-19 76.3
MS.gene062989.t1 MTR_8g076040 48.810 84 39 2 8 88 20 102 6.50e-19 74.7
MS.gene062989.t1 MTR_4g025830 51.389 72 31 2 23 91 76 146 1.70e-18 75.1
MS.gene062989.t1 MTR_2g043960 51.316 76 35 2 4 78 53 127 7.28e-18 73.6
MS.gene062989.t1 MTR_0388s0020 43.182 88 45 3 7 91 57 142 7.67e-17 70.9
MS.gene062989.t1 MTR_1g094750 51.613 62 29 1 25 86 49 109 3.70e-16 68.2
MS.gene062989.t1 MTR_8g461400 44.086 93 25 2 1 93 1 66 4.21e-16 66.6
MS.gene062989.t1 MTR_7g118010 53.968 63 26 2 26 86 23 84 6.66e-16 67.0
MS.gene062989.t1 MTR_3g092220 44.156 77 40 2 9 83 16 91 7.53e-16 67.4
MS.gene062989.t1 MTR_1g009150 50.746 67 32 1 17 83 62 127 1.47e-15 68.2
MS.gene062989.t1 MTR_1g024085 46.753 77 29 2 4 80 26 90 1.80e-15 67.0
MS.gene062989.t1 MTR_4g005310 45.455 77 35 2 17 86 47 123 2.70e-15 66.6
MS.gene062989.t1 MTR_7g101740 48.438 64 32 1 25 88 39 101 4.92e-15 65.1
MS.gene062989.t1 MTR_1g061570 55.357 56 24 1 25 80 18 72 5.64e-15 65.5
MS.gene062989.t1 MTR_8g026730 50.794 63 28 2 26 86 27 88 1.15e-14 63.9
MS.gene062989.t1 MTR_3g097120 42.683 82 38 2 19 92 2 82 1.61e-14 63.5
MS.gene062989.t1 MTR_1g063950 45.161 62 33 1 25 86 47 107 2.29e-14 63.5
MS.gene062989.t1 MTR_4g072840 45.556 90 18 3 1 90 1 59 1.18e-13 60.1
MS.gene062989.t1 MTR_4g005320 51.724 58 27 1 26 83 70 126 1.21e-13 62.8
MS.gene062989.t1 MTR_7g405740 44.118 68 37 1 12 79 53 119 2.56e-13 62.0
MS.gene062989.t1 MTR_8g461210 47.458 59 30 1 25 83 34 91 5.35e-13 60.1
MS.gene062989.t1 MTR_3g109160 49.296 71 35 1 8 78 51 120 7.63e-13 60.8
MS.gene062989.t1 MTR_2g066830 39.130 69 40 2 10 78 43 109 7.55e-12 57.8
MS.gene062989.t1 MTR_1g059770 44.828 58 31 1 26 83 49 105 7.88e-12 57.4
MS.gene062989.t1 MTR_8g094980 40.741 81 34 2 25 92 2 81 1.49e-11 56.2
MS.gene062989.t1 MTR_3g105900 66.667 36 12 0 25 60 1171 1206 1.55e-11 58.9
MS.gene062989.t1 MTR_7g104950 45.455 55 29 1 29 83 53 106 1.56e-11 56.6
MS.gene062989.t1 MTR_8g096440 44.776 67 34 2 13 79 34 97 3.66e-11 55.8
MS.gene062989.t1 MTR_8g101520 45.312 64 34 1 27 90 51 113 4.78e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062989.t1 AT4G38840 72.059 68 18 1 25 91 32 99 1.61e-31 106
MS.gene062989.t1 AT2G21210 52.632 95 41 2 1 91 1 95 2.06e-31 106
MS.gene062989.t1 AT2G21210 52.632 95 41 2 1 91 68 162 1.15e-30 106
MS.gene062989.t1 AT5G18080 60.000 75 29 1 17 90 15 89 1.06e-28 99.4
MS.gene062989.t1 AT5G18020 57.333 75 31 1 17 90 15 89 1.81e-28 98.6
MS.gene062989.t1 AT5G18010 57.333 75 31 1 17 90 15 89 2.24e-28 98.6
MS.gene062989.t1 AT3G03820 56.522 92 34 2 2 90 6 94 5.00e-28 97.8
MS.gene062989.t1 AT5G18060 66.154 65 21 1 27 90 25 89 1.39e-27 96.3
MS.gene062989.t1 AT5G18050 63.636 66 23 1 26 90 24 89 1.75e-27 96.3
MS.gene062989.t1 AT2G21200 59.722 72 28 1 20 90 15 86 5.06e-27 94.7
MS.gene062989.t1 AT5G18030 63.636 66 23 1 26 90 22 87 5.59e-27 94.7
MS.gene062989.t1 AT4G34770 66.667 69 21 1 25 91 34 102 9.53e-27 94.7
MS.gene062989.t1 AT4G38850 60.294 68 24 1 26 90 21 88 3.17e-26 92.8
MS.gene062989.t1 AT4G34800 51.685 89 35 2 1 86 1 84 3.64e-26 92.8
MS.gene062989.t1 AT4G38825 61.194 67 25 1 25 90 22 88 5.85e-26 92.4
MS.gene062989.t1 AT4G34810 62.857 70 21 2 26 90 48 117 1.71e-25 92.0
MS.gene062989.t1 AT3G03840 59.155 71 27 1 22 90 23 93 1.73e-25 91.3
MS.gene062989.t1 AT3G03850 62.121 66 23 1 27 90 26 91 1.16e-24 89.0
MS.gene062989.t1 AT4G34790 66.667 63 19 1 26 86 39 101 1.26e-24 89.4
MS.gene062989.t1 AT4G13790 49.315 73 35 1 20 90 19 91 2.26e-23 85.9
MS.gene062989.t1 AT3G03830 56.522 69 27 1 25 90 23 91 8.21e-23 84.3
MS.gene062989.t1 AT4G38860 51.190 84 38 1 8 88 19 102 3.63e-22 83.2
MS.gene062989.t1 AT4G34780 57.971 69 26 2 26 91 28 96 5.47e-22 82.8
MS.gene062989.t1 AT1G75580 48.889 90 38 2 8 90 19 107 2.40e-20 78.6
MS.gene062989.t1 AT2G21220 47.674 86 41 2 8 90 19 103 3.14e-20 78.2
MS.gene062989.t1 AT4G34760 49.315 73 36 1 18 90 35 106 4.64e-19 75.5
MS.gene062989.t1 AT1G19830 57.143 63 26 1 24 86 46 107 1.94e-18 73.9
MS.gene062989.t1 AT3G43120 61.111 54 20 1 25 78 78 130 3.47e-18 74.3
MS.gene062989.t1 AT4G36110 48.780 82 40 2 8 88 21 101 5.93e-18 72.4
MS.gene062989.t1 AT5G20810 62.963 54 19 1 25 78 78 130 2.65e-17 72.4
MS.gene062989.t1 AT5G66260 47.059 85 43 2 8 91 15 98 3.11e-17 70.5
MS.gene062989.t1 AT1G75590 52.113 71 29 2 13 83 33 98 3.91e-17 71.6
MS.gene062989.t1 AT5G20810 62.963 54 19 1 25 78 78 130 5.86e-17 72.0
MS.gene062989.t1 AT2G18010 50.000 72 35 1 17 88 39 109 6.74e-17 70.1
MS.gene062989.t1 AT2G16580 52.308 65 30 1 24 88 42 105 1.02e-16 69.3
MS.gene062989.t1 AT2G45210 42.105 76 40 2 19 91 72 146 3.04e-16 69.7
MS.gene062989.t1 AT5G10990 47.297 74 34 2 10 83 29 97 9.98e-16 67.8
MS.gene062989.t1 AT1G19840 48.649 74 33 2 10 83 29 97 1.11e-15 67.8
MS.gene062989.t1 AT3G51200 52.381 63 28 2 25 86 38 99 1.15e-15 66.6
MS.gene062989.t1 AT2G37030 48.387 62 31 1 25 86 48 108 1.68e-15 66.6
MS.gene062989.t1 AT3G60690 47.059 68 32 2 26 90 88 154 3.52e-15 67.0
MS.gene062989.t1 AT3G20220 54.237 59 25 2 26 83 47 104 1.14e-14 64.3
MS.gene062989.t1 AT4G00880 57.377 61 23 2 25 83 27 86 1.34e-14 64.3
MS.gene062989.t1 AT4G34750 45.161 62 33 1 25 86 36 96 1.56e-14 64.7
MS.gene062989.t1 AT4G34750 45.161 62 33 1 25 86 36 96 1.56e-14 64.7
MS.gene062989.t1 AT4G12410 47.826 69 32 2 26 91 76 143 3.10e-14 64.3
MS.gene062989.t1 AT2G46690 47.826 69 32 2 18 83 16 83 3.86e-14 63.2
MS.gene062989.t1 AT3G53250 42.466 73 37 2 14 86 41 108 5.46e-14 62.8
MS.gene062989.t1 AT3G53250 42.466 73 37 2 14 86 72 139 8.25e-14 63.2
MS.gene062989.t1 AT3G61900 52.632 57 23 2 25 78 29 84 2.22e-13 61.6
MS.gene062989.t1 AT4G22620 39.759 83 46 2 12 91 65 146 3.52e-13 61.6
MS.gene062989.t1 AT5G53590 41.096 73 37 2 25 92 45 116 1.30e-12 59.7
MS.gene062989.t1 AT4G09530 41.096 73 40 2 17 86 19 91 1.41e-12 58.5
MS.gene062989.t1 AT3G12830 46.875 64 29 2 15 78 43 101 4.46e-12 58.2
MS.gene062989.t1 AT4G31320 47.619 63 32 1 21 83 75 136 7.20e-12 58.5
MS.gene062989.t1 AT1G56150 42.857 63 35 1 16 78 28 89 9.65e-12 56.6
MS.gene062989.t1 AT2G24400 54.717 53 23 1 26 78 64 115 1.31e-11 57.8
MS.gene062989.t1 AT3G09870 45.070 71 34 3 25 91 44 113 8.90e-11 54.3

Find 22 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTAGATTCTTGTGTTT+TGG 0.227199 4.2:+35378811 None:intergenic
CATCAAGCAGAAGAAGAATT+TGG 0.279041 4.2:-35378680 MS.gene062989:CDS
TGTAGTAATTCTTGAAATAA+TGG 0.319917 4.2:+35378701 None:intergenic
ATTTGGATATGTTCATCCTA+TGG 0.395672 4.2:-35378663 MS.gene062989:CDS
GGTTGGTTCAAGTATGATAC+TGG 0.408482 4.2:+35378722 None:intergenic
TAGACTGCAAGATAGCCTTT+TGG 0.442040 4.2:+35378776 None:intergenic
GAGGGAGAATTCTTAAACCT+CGG 0.493393 4.2:-35378617 MS.gene062989:CDS
GTAATTCTTGAAATAATGGT+TGG 0.504955 4.2:+35378705 None:intergenic
AAGAATTCTCCCTCGCTACA+AGG 0.507613 4.2:+35378626 None:intergenic
TTTGGATATGTTCATCCTAT+GGG 0.518304 4.2:-35378662 MS.gene062989:CDS
GGCTATCTTGCAGTCTACGT+TGG 0.536328 4.2:-35378770 MS.gene062989:CDS
AAGGGATTCGAAGTCCCAAA+AGG 0.563694 4.2:-35378791 MS.gene062989:CDS
GGATATGTTCATCCTATGGG+TGG 0.573500 4.2:-35378659 MS.gene062989:CDS
CTCACAATTCCTTGTAGCGA+GGG 0.580910 4.2:-35378635 MS.gene062989:CDS
TTCTGATAAGCTTTGCTATG+CGG 0.610874 4.2:+35378846 None:intergenic
TCTACGTTGGAGATCAAATG+AGG 0.626265 4.2:-35378757 MS.gene062989:CDS
CAAAACACAAGAATCTACCA+AGG 0.648832 4.2:-35378810 MS.gene062989:CDS
TCTCACAATTCCTTGTAGCG+AGG 0.655893 4.2:-35378636 MS.gene062989:CDS
GGAATTGTGAGACCACCCAT+AGG 0.670166 4.2:+35378647 None:intergenic
AAAACACAAGAATCTACCAA+GGG 0.683751 4.2:-35378809 MS.gene062989:CDS
ACGTTGGAGATCAAATGAGG+CGG 0.704375 4.2:-35378754 MS.gene062989:CDS
GCTCACTCAAGCGAGAACCG+AGG 0.750449 4.2:+35378600 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAGTAATTCTTGAAATAA+TGG + chr4.2:35378751-35378770 None:intergenic 20.0%
! GTAATTCTTGAAATAATGGT+TGG + chr4.2:35378747-35378766 None:intergenic 25.0%
AAAACACAAGAATCTACCAA+GGG - chr4.2:35378640-35378659 MS.gene062989:CDS 30.0%
ATTTGGATATGTTCATCCTA+TGG - chr4.2:35378786-35378805 MS.gene062989:CDS 30.0%
TTTGGATATGTTCATCCTAT+GGG - chr4.2:35378787-35378806 MS.gene062989:CDS 30.0%
!!! TCTTGTGTTTTGGAAAATGA+TGG + chr4.2:35378631-35378650 None:intergenic 30.0%
CAAAACACAAGAATCTACCA+AGG - chr4.2:35378639-35378658 MS.gene062989:CDS 35.0%
CATCAAGCAGAAGAAGAATT+TGG - chr4.2:35378769-35378788 MS.gene062989:CDS 35.0%
! CTTGGTAGATTCTTGTGTTT+TGG + chr4.2:35378641-35378660 None:intergenic 35.0%
! TTCTGATAAGCTTTGCTATG+CGG + chr4.2:35378606-35378625 None:intergenic 35.0%
GAGGGAGAATTCTTAAACCT+CGG - chr4.2:35378832-35378851 MS.gene062989:CDS 40.0%
TCTACGTTGGAGATCAAATG+AGG - chr4.2:35378692-35378711 MS.gene062989:CDS 40.0%
! AGACTGCAAGATAGCCTTTT+GGG + chr4.2:35378675-35378694 None:intergenic 40.0%
! GGTTGGTTCAAGTATGATAC+TGG + chr4.2:35378730-35378749 None:intergenic 40.0%
! TAGACTGCAAGATAGCCTTT+TGG + chr4.2:35378676-35378695 None:intergenic 40.0%
AAGAATTCTCCCTCGCTACA+AGG + chr4.2:35378826-35378845 None:intergenic 45.0%
AAGGGATTCGAAGTCCCAAA+AGG - chr4.2:35378658-35378677 MS.gene062989:CDS 45.0%
ACGTTGGAGATCAAATGAGG+CGG - chr4.2:35378695-35378714 MS.gene062989:CDS 45.0%
CTCACAATTCCTTGTAGCGA+GGG - chr4.2:35378814-35378833 MS.gene062989:CDS 45.0%
GGATATGTTCATCCTATGGG+TGG - chr4.2:35378790-35378809 MS.gene062989:CDS 45.0%
TCTCACAATTCCTTGTAGCG+AGG - chr4.2:35378813-35378832 MS.gene062989:CDS 45.0%
!!! TTTTGGGACTTCGAATCCCT+TGG + chr4.2:35378659-35378678 None:intergenic 45.0%
GGAATTGTGAGACCACCCAT+AGG + chr4.2:35378805-35378824 None:intergenic 50.0%
GGCTATCTTGCAGTCTACGT+TGG - chr4.2:35378679-35378698 MS.gene062989:CDS 50.0%
GCTCACTCAAGCGAGAACCG+AGG + chr4.2:35378852-35378871 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 35378595 35378876 35378595 ID=MS.gene062989
chr4.2 mRNA 35378595 35378876 35378595 ID=MS.gene062989.t1;Parent=MS.gene062989
chr4.2 exon 35378595 35378876 35378595 ID=MS.gene062989.t1.exon1;Parent=MS.gene062989.t1
chr4.2 CDS 35378595 35378876 35378595 ID=cds.MS.gene062989.t1;Parent=MS.gene062989.t1
Gene Sequence

>MS.gene062989

ATGGGTTTCCGCATAGCAAAGCTTATCAGAATGCCATCATTTTCCAAAACACAAGAATCTACCAAGGGATTCGAAGTCCCAAAAGGCTATCTTGCAGTCTACGTTGGAGATCAAATGAGGCGGTTTGTGATTCCAGTATCATACTTGAACCAACCATTATTTCAAGAATTACTACATCAAGCAGAAGAAGAATTTGGATATGTTCATCCTATGGGTGGTCTCACAATTCCTTGTAGCGAGGGAGAATTCTTAAACCTCGGTTCTCGCTTGAGTGAGCTGTAA
Protein sequence

>MS.gene062989.t1

MGFRIAKLIRMPSFSKTQESTKGFEVPKGYLAVYVGDQMRRFVIPVSYLNQPLFQELLHQAEEEFGYVHPMGGLTIPCSEGEFLNLGSRLSEL