Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066388.t1 | XP_003613952.1 | 97.8 | 231 | 5 | 0 | 23 | 253 | 1 | 231 | 2.80E-120 | 441.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066388.t1 | Q9C4Z7 | 60.3 | 232 | 78 | 6 | 26 | 250 | 5 | 229 | 5.4e-64 | 245.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066388.t1 | G7JWN8 | 97.8 | 231 | 5 | 0 | 23 | 253 | 1 | 231 | 2.0e-120 | 441.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene066388 | 0.81548 | 9.05E-52 | -1.69E-46 |
| MS.gene049284 | MS.gene066388 | 0.804818 | 1.80E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene066388 | 0.847212 | 1.33E-59 | -1.69E-46 |
| MS.gene049491 | MS.gene066388 | 0.826398 | 2.77E-54 | -1.69E-46 |
| MS.gene049681 | MS.gene066388 | 0.815236 | 1.02E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene066388 | 0.810204 | 1.29E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene066388 | 0.81388 | 2.05E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene066388 | 0.824841 | 6.49E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene066388 | 0.895656 | 7.79E-76 | -1.69E-46 |
| MS.gene050397 | MS.gene066388 | 0.833259 | 5.91E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene066388 | 0.800844 | 1.19E-48 | -1.69E-46 |
| MS.gene050558 | MS.gene066388 | 0.810373 | 1.19E-50 | -1.69E-46 |
| MS.gene050560 | MS.gene066388 | 0.816433 | 5.55E-52 | -1.69E-46 |
| MS.gene050650 | MS.gene066388 | 0.837676 | 4.52E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene066388 | 0.83403 | 3.79E-56 | -1.69E-46 |
| MS.gene050783 | MS.gene066388 | 0.806633 | 7.48E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene066388 | 0.841084 | 5.89E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene066388 | 0.819302 | 1.25E-52 | -1.69E-46 |
| MS.gene051255 | MS.gene066388 | 0.816257 | 6.07E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene066388 | 0.855541 | 5.89E-62 | -1.69E-46 |
| MS.gene051387 | MS.gene066388 | 0.833337 | 5.65E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene066388 | 0.828741 | 7.59E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene066388 | 0.817244 | 3.65E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene066388 | 0.850066 | 2.16E-60 | -1.69E-46 |
| MS.gene051877 | MS.gene066388 | 0.804609 | 1.99E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene066388 | -0.840059 | 1.09E-57 | -1.69E-46 |
| MS.gene052178 | MS.gene066388 | 0.810961 | 8.88E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene066388 | 0.837945 | 3.85E-57 | -1.69E-46 |
| MS.gene052207 | MS.gene066388 | 0.846467 | 2.13E-59 | -1.69E-46 |
| MS.gene052253 | MS.gene066388 | 0.84687 | 1.66E-59 | -1.69E-46 |
| MS.gene052287 | MS.gene066388 | 0.816054 | 6.74E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene066388 | 0.8033 | 3.72E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene066388 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene066388 | 0.822809 | 1.94E-53 | -1.69E-46 |
| MS.gene052481 | MS.gene066388 | 0.829899 | 3.98E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene066388 | 0.809431 | 1.90E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene066388 | 0.861879 | 7.52E-64 | -1.69E-46 |
| MS.gene052982 | MS.gene066388 | 0.821036 | 5.00E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene066388 | 0.840788 | 7.04E-58 | -1.69E-46 |
| MS.gene053557 | MS.gene066388 | 0.815351 | 9.66E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene066388 | 0.853154 | 2.88E-61 | -1.69E-46 |
| MS.gene053928 | MS.gene066388 | 0.803912 | 2.78E-49 | -1.69E-46 |
| MS.gene054010 | MS.gene066388 | 0.85701 | 2.18E-62 | -1.69E-46 |
| MS.gene054011 | MS.gene066388 | 0.850184 | 2.00E-60 | -1.69E-46 |
| MS.gene054012 | MS.gene066388 | 0.854759 | 9.94E-62 | -1.69E-46 |
| MS.gene054013 | MS.gene066388 | 0.855616 | 5.60E-62 | -1.69E-46 |
| MS.gene054123 | MS.gene066388 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene066388 | 0.830512 | 2.82E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene066388 | 0.842492 | 2.50E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene066388 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene05455 | MS.gene066388 | 0.838812 | 2.30E-57 | -1.69E-46 |
| MS.gene054719 | MS.gene066388 | 0.833234 | 6.00E-56 | -1.69E-46 |
| MS.gene054920 | MS.gene066388 | 0.806904 | 6.56E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene066388 | 0.827201 | 1.78E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene066388 | 0.855306 | 6.89E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene066388 | 0.859359 | 4.37E-63 | -1.69E-46 |
| MS.gene055412 | MS.gene066388 | 0.825547 | 4.42E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene066388 | 0.843794 | 1.13E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene066388 | 0.849474 | 3.16E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene066388 | 0.840779 | 7.08E-58 | -1.69E-46 |
| MS.gene055604 | MS.gene066388 | 0.872978 | 2.10E-67 | -1.69E-46 |
| MS.gene055666 | MS.gene066388 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene05594 | MS.gene066388 | 0.800525 | 1.38E-48 | -1.69E-46 |
| MS.gene056191 | MS.gene066388 | 0.851444 | 8.84E-61 | -1.69E-46 |
| MS.gene056407 | MS.gene066388 | 0.865831 | 4.44E-65 | -1.69E-46 |
| MS.gene056410 | MS.gene066388 | 0.849106 | 4.00E-60 | -1.69E-46 |
| MS.gene056452 | MS.gene066388 | 0.814875 | 1.23E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene066388 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene066388 | 0.816965 | 4.21E-52 | -1.69E-46 |
| MS.gene056723 | MS.gene066388 | 0.820867 | 5.47E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene066388 | 0.844769 | 6.16E-59 | -1.69E-46 |
| MS.gene056902 | MS.gene066388 | 0.85638 | 3.34E-62 | -1.69E-46 |
| MS.gene056931 | MS.gene066388 | 0.835524 | 1.60E-56 | -1.69E-46 |
| MS.gene056933 | MS.gene066388 | 0.832832 | 7.55E-56 | -1.69E-46 |
| MS.gene056935 | MS.gene066388 | 0.828917 | 6.89E-55 | -1.69E-46 |
| MS.gene057011 | MS.gene066388 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene066388 | 0.854986 | 8.54E-62 | -1.69E-46 |
| MS.gene057121 | MS.gene066388 | 0.842039 | 3.30E-58 | -1.69E-46 |
| MS.gene057245 | MS.gene066388 | 0.822664 | 2.10E-53 | -1.69E-46 |
| MS.gene05733 | MS.gene066388 | 0.80601 | 1.01E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene066388 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene066388 | 0.807155 | 5.80E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene066388 | 0.864784 | 9.48E-65 | -1.69E-46 |
| MS.gene057476 | MS.gene066388 | 0.81988 | 9.20E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene066388 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene066388 | 0.838068 | 3.58E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene066388 | 0.848743 | 5.05E-60 | -1.69E-46 |
| MS.gene058082 | MS.gene066388 | 0.817371 | 3.41E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene066388 | 0.881847 | 1.71E-70 | -1.69E-46 |
| MS.gene058142 | MS.gene066388 | 0.826239 | 3.03E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene066388 | 0.829346 | 5.42E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene066388 | 0.819578 | 1.08E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene066388 | 0.802517 | 5.40E-49 | -1.69E-46 |
| MS.gene05842 | MS.gene066388 | 0.820791 | 5.69E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene066388 | 0.85466 | 1.06E-61 | -1.69E-46 |
| MS.gene058700 | MS.gene066388 | 0.832533 | 8.95E-56 | -1.69E-46 |
| MS.gene058787 | MS.gene066388 | 0.802589 | 5.22E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene066388 | 0.809011 | 2.34E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene066388 | 0.803737 | 3.02E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene066388 | 0.882217 | 1.25E-70 | -1.69E-46 |
| MS.gene059141 | MS.gene066388 | 0.819874 | 9.23E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene066388 | 0.828113 | 1.08E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene066388 | 0.855802 | 4.94E-62 | -1.69E-46 |
| MS.gene059518 | MS.gene066388 | 0.822967 | 1.78E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene066388 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene059597 | MS.gene066388 | 0.841382 | 4.92E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene066388 | 0.849271 | 3.60E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene066388 | 0.842757 | 2.13E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene066388 | 0.842047 | 3.28E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene066388 | 0.846496 | 2.09E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene066388 | 0.842801 | 2.07E-58 | -1.69E-46 |
| MS.gene059894 | MS.gene066388 | 0.815692 | 8.12E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene066388 | 0.815659 | 8.25E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene066388 | 0.810086 | 1.37E-50 | -1.69E-46 |
| MS.gene060559 | MS.gene066388 | 0.846329 | 2.33E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene066388 | 0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene066388 | 0.817749 | 2.81E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene066388 | 0.851697 | 7.50E-61 | -1.69E-46 |
| MS.gene061154 | MS.gene066388 | 0.81023 | 1.28E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene066388 | 0.803955 | 2.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066388.t1 | MTR_5g043020 | 97.835 | 231 | 5 | 0 | 23 | 253 | 1 | 231 | 8.19e-169 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066388.t1 | AT1G69390 | 60.169 | 236 | 79 | 7 | 23 | 250 | 1 | 229 | 6.45e-88 | 260 |
Find 46 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCACCACTTGATATTC+TGG | 0.244756 | 5.1:+32560829 | None:intergenic |
| TTTCTTTGAGCGTTTAAATT+TGG | 0.250395 | 5.1:-32561112 | MS.gene066388:CDS |
| CTATCAACAATGGCGATTTC+CGG | 0.270969 | 5.1:-32562911 | MS.gene066388:CDS |
| GGAGAAAGTTCTCAGCTTCT+TGG | 0.278127 | 5.1:+32561154 | None:intergenic |
| AAGGACACTGGAGATATTTC+AGG | 0.278153 | 5.1:-32560778 | MS.gene066388:CDS |
| AATGGAGGGTCCTGCATATC+TGG | 0.296453 | 5.1:-32561288 | MS.gene066388:CDS |
| TATCAAGTGGTGGATGAAAC+TGG | 0.298342 | 5.1:-32560823 | MS.gene066388:CDS |
| GTGCTTCTGTTCACTGTTGC+AGG | 0.300844 | 5.1:+32562959 | None:intergenic |
| AATAACAAATATTGAGTATA+AGG | 0.315113 | 5.1:-32560797 | MS.gene066388:CDS |
| GTTGTCATGGTGGAACGTTT+TGG | 0.358148 | 5.1:+32561258 | None:intergenic |
| GTCTCTGCAGATACAGATAT+TGG | 0.363379 | 5.1:-32560892 | MS.gene066388:CDS |
| GGGAACTGTAACAGAGTAAA+TGG | 0.372870 | 5.1:+32560867 | None:intergenic |
| TAGATTTGATTTCTATGTTC+CGG | 0.386558 | 5.1:-32560743 | MS.gene066388:CDS |
| CAAAATCAAGACATTTCATC+CGG | 0.406142 | 5.1:+32560724 | None:intergenic |
| AATCATCTTCAGACGTTGCT+TGG | 0.438839 | 5.1:+32561032 | None:intergenic |
| TTCTGGTTTAACCCGCCGTA+CGG | 0.458433 | 5.1:+32560846 | None:intergenic |
| AGAGGATGTGAGCGATGAAG+TGG | 0.464135 | 5.1:+32562863 | None:intergenic |
| TTCATTGTTTCTTAAATGGA+GGG | 0.495949 | 5.1:-32561302 | MS.gene066388:CDS |
| AAAGATGTGGTTGGAAGGAG+AGG | 0.498974 | 5.1:+32562845 | None:intergenic |
| TGGGGTGAATCCAGATATGC+AGG | 0.499751 | 5.1:+32561278 | None:intergenic |
| TCTGGTTTAACCCGCCGTAC+GGG | 0.504423 | 5.1:+32560847 | None:intergenic |
| CTAAGAAAAGCTCCGTTGCT+AGG | 0.515407 | 5.1:-32561059 | MS.gene066388:CDS |
| GAAGAAAAGATGTGGTTGGA+AGG | 0.516372 | 5.1:+32562840 | None:intergenic |
| TTTCATTGTTTCTTAAATGG+AGG | 0.517610 | 5.1:-32561303 | MS.gene066388:CDS |
| GGAGGAAGAAAAGATGTGGT+TGG | 0.525930 | 5.1:+32562836 | None:intergenic |
| TTGAGCGTTTAAATTTGGCT+TGG | 0.527703 | 5.1:-32561107 | MS.gene066388:CDS |
| AGAAGCACTGAAAATCCGTT+GGG | 0.545517 | 5.1:-32562944 | MS.gene066388:CDS |
| CAGAAGCACTGAAAATCCGT+TGG | 0.550049 | 5.1:-32562945 | MS.gene066388:CDS |
| TGCAGTGACTCTAATGTCGC+CGG | 0.551915 | 5.1:+32562892 | None:intergenic |
| ATTGCTTCGTACAGTTGTCA+TGG | 0.565206 | 5.1:+32561245 | None:intergenic |
| ATCAAGTGGTGGATGAAACT+GGG | 0.583073 | 5.1:-32560822 | MS.gene066388:CDS |
| TGTTACAGTTCCCGTACGGC+GGG | 0.585141 | 5.1:-32560857 | MS.gene066388:CDS |
| AAAAGGAACGATACCTTTGG+AGG | 0.585564 | 5.1:+32562818 | None:intergenic |
| AATATTGAGTATAAGGACAC+TGG | 0.585790 | 5.1:-32560790 | MS.gene066388:CDS |
| CTGTTACAGTTCCCGTACGG+CGG | 0.587827 | 5.1:-32560858 | MS.gene066388:CDS |
| AACTCATATTAACAGCATCA+AGG | 0.588920 | 5.1:+32561133 | None:intergenic |
| GATAGCTTCGTATTTCCCAA+CGG | 0.621750 | 5.1:+32562929 | None:intergenic |
| CTTTGGAGGAAGAAAAGATG+TGG | 0.629115 | 5.1:+32562832 | None:intergenic |
| ACTCTGTTACAGTTCCCGTA+CGG | 0.633138 | 5.1:-32560861 | MS.gene066388:CDS |
| TTGCTTGGCAATCCTAGCAA+CGG | 0.640673 | 5.1:+32561047 | None:intergenic |
| TAAACCAGAATATCAAGTGG+TGG | 0.645335 | 5.1:-32560833 | MS.gene066388:CDS |
| AAATACGAAGCTATCAACAA+TGG | 0.648522 | 5.1:-32562921 | MS.gene066388:CDS |
| GCTTCGTACAGTTGTCATGG+TGG | 0.658571 | 5.1:+32561248 | None:intergenic |
| GGTTAAACCAGAATATCAAG+TGG | 0.711520 | 5.1:-32560836 | MS.gene066388:CDS |
| ACTGTACGAAGCAATATGCG+TGG | 0.726540 | 5.1:-32561237 | MS.gene066388:CDS |
| TCGATGTGAAGTAAGTGATG+AGG | 0.741244 | 5.1:-32560998 | MS.gene066388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:32561951-32561970 | MS.gene066388:intron | 100.0% |
| !! | AATAACAAATATTGAGTATA+AGG | - | chr5.1:32562900-32562919 | MS.gene066388:CDS | 15.0% |
| !! | ATAAATATAAGCTTAAAACA+TGG | + | chr5.1:32561372-32561391 | None:intergenic | 15.0% |
| !! | ATTTATGTATGTATTTAGTT+TGG | - | chr5.1:32561116-32561135 | MS.gene066388:CDS | 15.0% |
| !!! | AAACATGTCATATTTTATTT+TGG | - | chr5.1:32561930-32561949 | MS.gene066388:intron | 15.0% |
| !!! | AACATGTCATATTTTATTTT+GGG | - | chr5.1:32561931-32561950 | MS.gene066388:intron | 15.0% |
| !!! | ATGTTTTAAGCTTATATTTA+TGG | - | chr5.1:32561371-32561390 | MS.gene066388:intron | 15.0% |
| !!! | TGTAGTTTTTGTTAAAATTT+TGG | - | chr5.1:32561444-32561463 | MS.gene066388:intron | 15.0% |
| !!! | TTTTCTTTTTTCTCTAATTA+GGG | - | chr5.1:32560898-32560917 | MS.gene066388:CDS | 15.0% |
| !! | ATGACATAATTTATATGTGT+TGG | - | chr5.1:32561222-32561241 | MS.gene066388:CDS | 20.0% |
| !! | CTAATTAGAGAAAAAAGAAA+AGG | + | chr5.1:32560899-32560918 | None:intergenic | 20.0% |
| !! | GTTTGAGTAATAAAAATGAA+GGG | - | chr5.1:32561583-32561602 | MS.gene066388:intron | 20.0% |
| !! | TGTTTGAGTAATAAAAATGA+AGG | - | chr5.1:32561582-32561601 | MS.gene066388:intron | 20.0% |
| !! | TTTGAGTAATAAAAATGAAG+GGG | - | chr5.1:32561584-32561603 | MS.gene066388:intron | 20.0% |
| !!! | AACATGTGATATAATTTTCA+AGG | + | chr5.1:32561566-32561585 | None:intergenic | 20.0% |
| !!! | AACATTTTGTAAATCTTGTA+AGG | + | chr5.1:32562330-32562349 | None:intergenic | 20.0% |
| !!! | ACATGTCATATTTTATTTTG+GGG | - | chr5.1:32561932-32561951 | MS.gene066388:intron | 20.0% |
| !!! | ATATTTAATTTAGATGCTTG+TGG | - | chr5.1:32562252-32562271 | MS.gene066388:intron | 20.0% |
| !!! | CTTTGTTATAGATGTATTTT+CGG | - | chr5.1:32561529-32561548 | MS.gene066388:intron | 20.0% |
| !!! | CTTTTCTTTTTTCTCTAATT+AGG | - | chr5.1:32560897-32560916 | MS.gene066388:CDS | 20.0% |
| !!! | GATTTTCATTGTTTCTTAAA+TGG | - | chr5.1:32562391-32562410 | MS.gene066388:intron | 20.0% |
| !!! | TATTTTCTCTTGCAAATTAA+CGG | - | chr5.1:32560950-32560969 | MS.gene066388:CDS | 20.0% |
| !!! | TCATTTTCTCACATTATTAT+CGG | + | chr5.1:32561206-32561225 | None:intergenic | 20.0% |
| !!! | TGTTACTGTTGTTTTAATAA+TGG | - | chr5.1:32561037-32561056 | MS.gene066388:CDS | 20.0% |
| !!! | TTGAAAGTGTCAATTATTTT+AGG | + | chr5.1:32561763-32561782 | None:intergenic | 20.0% |
| !!! | TTTTAACAAAAACTACACTT+TGG | + | chr5.1:32561441-32561460 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAAATTTTGGTAG+CGG | - | chr5.1:32561450-32561469 | MS.gene066388:intron | 20.0% |
| ! | AACACATATTTCCAATCAAA+TGG | + | chr5.1:32562054-32562073 | None:intergenic | 25.0% |
| ! | AATCCAAACTTGTACTAAAA+CGG | - | chr5.1:32561499-32561518 | MS.gene066388:intron | 25.0% |
| ! | ATCAACATAGAATGGAAAAA+TGG | + | chr5.1:32562131-32562150 | None:intergenic | 25.0% |
| ! | CAGAACAATTAAGATTAACT+AGG | + | chr5.1:32562360-32562379 | None:intergenic | 25.0% |
| ! | TCACTATGTCCATTAATAAT+CGG | - | chr5.1:32561687-32561706 | MS.gene066388:intron | 25.0% |
| ! | TGAGTTTGAAGAAATTATTG+CGG | - | chr5.1:32561394-32561413 | MS.gene066388:intron | 25.0% |
| ! | TGTTATTGTCTAAACTCTAT+AGG | - | chr5.1:32561638-32561657 | MS.gene066388:intron | 25.0% |
| ! | TTTCTTTGAGCGTTTAAATT+TGG | - | chr5.1:32562585-32562604 | MS.gene066388:intron | 25.0% |
| !! | CCTTTTTGATATTCAGTATA+GGG | - | chr5.1:32562185-32562204 | MS.gene066388:intron | 25.0% |
| !! | CTTTTTGATATTCAGTATAG+GGG | - | chr5.1:32562186-32562205 | MS.gene066388:intron | 25.0% |
| !! | GACAAATTTCTTTTGCAAAT+AGG | + | chr5.1:32561713-32561732 | None:intergenic | 25.0% |
| !! | GACTACAGTAATTGAAATTT+TGG | - | chr5.1:32561327-32561346 | MS.gene066388:intron | 25.0% |
| !! | TAGATTTGATTTCTATGTTC+CGG | - | chr5.1:32562954-32562973 | MS.gene066388:CDS | 25.0% |
| !! | TATTTTCTCCAATTTCTCTA+AGG | + | chr5.1:32562100-32562119 | None:intergenic | 25.0% |
| !! | TTCATTGTTTCTTAAATGGA+GGG | - | chr5.1:32562395-32562414 | MS.gene066388:intron | 25.0% |
| !! | TTTCATTGTTTCTTAAATGG+AGG | - | chr5.1:32562394-32562413 | MS.gene066388:intron | 25.0% |
| !! | TTTTTCCATTCTATGTTGAT+CGG | - | chr5.1:32562131-32562150 | MS.gene066388:intron | 25.0% |
| !!! | AATTTCAAGTTCAGAAATGT+TGG | - | chr5.1:32561092-32561111 | MS.gene066388:CDS | 25.0% |
| !!! | ATGTCATATTTTATTTTGGG+GGG | - | chr5.1:32561934-32561953 | MS.gene066388:intron | 25.0% |
| !!! | CATGTCATATTTTATTTTGG+GGG | - | chr5.1:32561933-32561952 | MS.gene066388:intron | 25.0% |
| !!! | CTTTGAAACAAACTTATTCT+GGG | + | chr5.1:32561735-32561754 | None:intergenic | 25.0% |
| !!! | TCTTTGAAACAAACTTATTC+TGG | + | chr5.1:32561736-32561755 | None:intergenic | 25.0% |
| !!! | TGTATGTATTTAGTTTGGTT+TGG | - | chr5.1:32561121-32561140 | MS.gene066388:CDS | 25.0% |
| AAATACGAAGCTATCAACAA+TGG | - | chr5.1:32560776-32560795 | MS.gene066388:CDS | 30.0% | |
| AACTCATATTAACAGCATCA+AGG | + | chr5.1:32562567-32562586 | None:intergenic | 30.0% | |
| AATAAAAATGAAGGGGAATG+AGG | - | chr5.1:32561591-32561610 | MS.gene066388:intron | 30.0% | |
| AATATTGAGTATAAGGACAC+TGG | - | chr5.1:32562907-32562926 | MS.gene066388:CDS | 30.0% | |
| AATTAAGCACAAATACTCCT+TGG | + | chr5.1:32561293-32561312 | None:intergenic | 30.0% | |
| ACATAGTGAGTAATGAATTG+TGG | + | chr5.1:32561676-32561695 | None:intergenic | 30.0% | |
| ATACCACTCTGAATTCAATA+AGG | - | chr5.1:32561840-32561859 | MS.gene066388:intron | 30.0% | |
| ATGAAAAATTAGAACCTCCA+AGG | + | chr5.1:32562510-32562529 | None:intergenic | 30.0% | |
| CCCTATACTGAATATCAAAA+AGG | + | chr5.1:32562188-32562207 | None:intergenic | 30.0% | |
| GAGTTTGAAGAAATTATTGC+GGG | - | chr5.1:32561395-32561414 | MS.gene066388:intron | 30.0% | |
| TATCCTTATTGAATTCAGAG+TGG | + | chr5.1:32561846-32561865 | None:intergenic | 30.0% | |
| TCCAATCAAATGGAATAAAG+TGG | + | chr5.1:32562044-32562063 | None:intergenic | 30.0% | |
| TCCACTTTATTCCATTTGAT+TGG | - | chr5.1:32562040-32562059 | MS.gene066388:intron | 30.0% | |
| TCTTAATTGTTCTGTCTAAC+AGG | - | chr5.1:32562366-32562385 | MS.gene066388:intron | 30.0% | |
| ! | GCCTTTTTGATATTCAGTAT+AGG | - | chr5.1:32562184-32562203 | MS.gene066388:intron | 30.0% |
| !!! | ACTGATACTTTGTTTTAGAG+GGG | + | chr5.1:32562002-32562021 | None:intergenic | 30.0% |
| !!! | CACTGATACTTTGTTTTAGA+GGG | + | chr5.1:32562003-32562022 | None:intergenic | 30.0% |
| !!! | TGTCATATTTTATTTTGGGG+GGG | - | chr5.1:32561935-32561954 | MS.gene066388:intron | 30.0% |
| AAGAAAAGGAACGATACCTT+TGG | + | chr5.1:32560885-32560904 | None:intergenic | 35.0% | |
| GCAAATAGGCCGATTATTAA+TGG | + | chr5.1:32561699-32561718 | None:intergenic | 35.0% | |
| GGTTAAACCAGAATATCAAG+TGG | - | chr5.1:32562861-32562880 | MS.gene066388:CDS | 35.0% | |
| TAAACCAGAATATCAAGTGG+TGG | - | chr5.1:32562864-32562883 | MS.gene066388:CDS | 35.0% | |
| TGTTGATCGGTTGCTAAAAT+AGG | - | chr5.1:32562144-32562163 | MS.gene066388:intron | 35.0% | |
| TTAATTTAGATGCTTGTGGC+TGG | - | chr5.1:32562256-32562275 | MS.gene066388:intron | 35.0% | |
| TTGAGCGTTTAAATTTGGCT+TGG | - | chr5.1:32562590-32562609 | MS.gene066388:intron | 35.0% | |
| ! | TTTCTCCAATTTCTCTAAGG+CGG | + | chr5.1:32562097-32562116 | None:intergenic | 35.0% |
| ! | TTTTCTTAGACACTGCTGAT+GGG | + | chr5.1:32562627-32562646 | None:intergenic | 35.0% |
| !! | CCTCTAAAACAAAGTATCAG+TGG | - | chr5.1:32562001-32562020 | MS.gene066388:intron | 35.0% |
| !! | TATTATCGGTGTTGACATTC+TGG | + | chr5.1:32561192-32561211 | None:intergenic | 35.0% |
| !!! | CCACTGATACTTTGTTTTAG+AGG | + | chr5.1:32562004-32562023 | None:intergenic | 35.0% |
| !!! | GTCATATTTTATTTTGGGGG+GGG | - | chr5.1:32561936-32561955 | MS.gene066388:intron | 35.0% |
| !!! | TCATATTTTATTTTGGGGGG+GGG | - | chr5.1:32561937-32561956 | MS.gene066388:intron | 35.0% |
| AAAAGGAACGATACCTTTGG+AGG | + | chr5.1:32560882-32560901 | None:intergenic | 40.0% | |
| AAGGACACTGGAGATATTTC+AGG | - | chr5.1:32562919-32562938 | MS.gene066388:CDS | 40.0% | |
| AATCATCTTCAGACGTTGCT+TGG | + | chr5.1:32562668-32562687 | None:intergenic | 40.0% | |
| AGCAACCGATCAACATAGAA+TGG | + | chr5.1:32562139-32562158 | None:intergenic | 40.0% | |
| ATTGCTTCGTACAGTTGTCA+TGG | + | chr5.1:32562455-32562474 | None:intergenic | 40.0% | |
| CCAAACTTGTACTAAAACGG+TGG | - | chr5.1:32561502-32561521 | MS.gene066388:intron | 40.0% | |
| CTATCAACAATGGCGATTTC+CGG | - | chr5.1:32560786-32560805 | MS.gene066388:CDS | 40.0% | |
| GAAGAAAAGATGTGGTTGGA+AGG | + | chr5.1:32560860-32560879 | None:intergenic | 40.0% | |
| GATAGCTTCGTATTTCCCAA+CGG | + | chr5.1:32560771-32560790 | None:intergenic | 40.0% | |
| GCACAAATACTCCTTGGATT+AGG | + | chr5.1:32561287-32561306 | None:intergenic | 40.0% | |
| GGGAACTGTAACAGAGTAAA+TGG | + | chr5.1:32562833-32562852 | None:intergenic | 40.0% | |
| GTCTCTGCAGATACAGATAT+TGG | - | chr5.1:32562805-32562824 | MS.gene066388:intron | 40.0% | |
| GTGTCAGACTCAATACGTAT+CGG | - | chr5.1:32561250-32561269 | MS.gene066388:CDS | 40.0% | |
| TCATCCACCACTTGATATTC+TGG | + | chr5.1:32562871-32562890 | None:intergenic | 40.0% | |
| TCGATGTGAAGTAAGTGATG+AGG | - | chr5.1:32562699-32562718 | MS.gene066388:intron | 40.0% | |
| ! | CACATCTTTTCTTCCTCCAA+AGG | - | chr5.1:32560866-32560885 | MS.gene066388:CDS | 40.0% |
| ! | CTTTGGAGGAAGAAAAGATG+TGG | + | chr5.1:32560868-32560887 | None:intergenic | 40.0% |
| ! | CTTTTCTTAGACACTGCTGA+TGG | + | chr5.1:32562628-32562647 | None:intergenic | 40.0% |
| !! | AGAAGCACTGAAAATCCGTT+GGG | - | chr5.1:32560753-32560772 | MS.gene066388:CDS | 40.0% |
| !! | ATCAAGTGGTGGATGAAACT+GGG | - | chr5.1:32562875-32562894 | MS.gene066388:CDS | 40.0% |
| !! | CCACCGTTTTAGTACAAGTT+TGG | + | chr5.1:32561505-32561524 | None:intergenic | 40.0% |
| !! | TATCAAGTGGTGGATGAAAC+TGG | - | chr5.1:32562874-32562893 | MS.gene066388:CDS | 40.0% |
| !! | TTCTCCAATTTCTCTAAGGC+GGG | + | chr5.1:32562096-32562115 | None:intergenic | 40.0% |
| !! | TTGTCATGGTGGAACGTTTT+GGG | + | chr5.1:32562441-32562460 | None:intergenic | 40.0% |
| !!! | ATATTTTATTTTGGGGGGGG+GGG | - | chr5.1:32561939-32561958 | MS.gene066388:intron | 40.0% |
| !!! | CATATTTTATTTTGGGGGGG+GGG | - | chr5.1:32561938-32561957 | MS.gene066388:intron | 40.0% |
| AAAGATGTGGTTGGAAGGAG+AGG | + | chr5.1:32560855-32560874 | None:intergenic | 45.0% | |
| ACTCAATACGTATCGGACAC+CGG | - | chr5.1:32561257-32561276 | MS.gene066388:CDS | 45.0% | |
| ACTCTGTTACAGTTCCCGTA+CGG | - | chr5.1:32562836-32562855 | MS.gene066388:CDS | 45.0% | |
| ACTGTACGAAGCAATATGCG+TGG | - | chr5.1:32562460-32562479 | MS.gene066388:intron | 45.0% | |
| CTAAGAAAAGCTCCGTTGCT+AGG | - | chr5.1:32562638-32562657 | MS.gene066388:intron | 45.0% | |
| GGAGAAAGTTCTCAGCTTCT+TGG | + | chr5.1:32562546-32562565 | None:intergenic | 45.0% | |
| GGAGGAAGAAAAGATGTGGT+TGG | + | chr5.1:32560864-32560883 | None:intergenic | 45.0% | |
| GTTCCGGATGAAATGTCTTG+AGG | - | chr5.1:32562970-32562989 | MS.gene066388:CDS | 45.0% | |
| TTGCTTGGCAATCCTAGCAA+CGG | + | chr5.1:32562653-32562672 | None:intergenic | 45.0% | |
| ! | GCGTGCTCTATCAGATTTTG+TGG | - | chr5.1:32562750-32562769 | MS.gene066388:intron | 45.0% |
| !! | CAGAAGCACTGAAAATCCGT+TGG | - | chr5.1:32560752-32560771 | MS.gene066388:CDS | 45.0% |
| !! | GTTGTCATGGTGGAACGTTT+TGG | + | chr5.1:32562442-32562461 | None:intergenic | 45.0% |
| !! | TCTCCAATTTCTCTAAGGCG+GGG | + | chr5.1:32562095-32562114 | None:intergenic | 45.0% |
| !! | TGTCATGGTGGAACGTTTTG+GGG | + | chr5.1:32562440-32562459 | None:intergenic | 45.0% |
| !!! | AAGCCTGTTTTTGCAGTCCT+TGG | - | chr5.1:32562490-32562509 | MS.gene066388:intron | 45.0% |
| !!! | TATTTTATTTTGGGGGGGGG+GGG | - | chr5.1:32561940-32561959 | MS.gene066388:intron | 45.0% |
| AATGGAGGGTCCTGCATATC+TGG | - | chr5.1:32562409-32562428 | MS.gene066388:intron | 50.0% | |
| AGAGGATGTGAGCGATGAAG+TGG | + | chr5.1:32560837-32560856 | None:intergenic | 50.0% | |
| CCTCCAAGGACTGCAAAAAC+AGG | + | chr5.1:32562496-32562515 | None:intergenic | 50.0% | |
| GCTTCGTACAGTTGTCATGG+TGG | + | chr5.1:32562452-32562471 | None:intergenic | 50.0% | |
| GTGCTTCTGTTCACTGTTGC+AGG | + | chr5.1:32560741-32560760 | None:intergenic | 50.0% | |
| GTTCCCCGCCTTAGAGAAAT+TGG | - | chr5.1:32562089-32562108 | MS.gene066388:intron | 50.0% | |
| TGCAGTGACTCTAATGTCGC+CGG | + | chr5.1:32560808-32560827 | None:intergenic | 50.0% | |
| TGGGGTGAATCCAGATATGC+AGG | + | chr5.1:32562422-32562441 | None:intergenic | 50.0% | |
| ! | ACTCCTTGGATTAGGCTGTC+CGG | + | chr5.1:32561279-32561298 | None:intergenic | 50.0% |
| !! | GGTGTTGACATTCTGGTGTC+TGG | + | chr5.1:32561185-32561204 | None:intergenic | 50.0% |
| !! | TTCTGGTTTAACCCGCCGTA+CGG | + | chr5.1:32562854-32562873 | None:intergenic | 50.0% |
| !!! | ATTTTATTTTGGGGGGGGGG+GGG | - | chr5.1:32561941-32561960 | MS.gene066388:intron | 50.0% |
| !!! | CCTGTTTTTGCAGTCCTTGG+AGG | - | chr5.1:32562493-32562512 | MS.gene066388:intron | 50.0% |
| ACACCGGACAGCCTAATCCA+AGG | - | chr5.1:32561273-32561292 | MS.gene066388:CDS | 55.0% | |
| CTGTTACAGTTCCCGTACGG+CGG | - | chr5.1:32562839-32562858 | MS.gene066388:CDS | 55.0% | |
| TGTTACAGTTCCCGTACGGC+GGG | - | chr5.1:32562840-32562859 | MS.gene066388:CDS | 55.0% | |
| ! | TCTGGTTTAACCCGCCGTAC+GGG | + | chr5.1:32562853-32562872 | None:intergenic | 55.0% |
| !!! | TTTTATTTTGGGGGGGGGGG+GGG | - | chr5.1:32561942-32561961 | MS.gene066388:intron | 55.0% |
| !!! | TTTATTTTGGGGGGGGGGGG+GGG | - | chr5.1:32561943-32561962 | MS.gene066388:intron | 60.0% |
| !!! | TTATTTTGGGGGGGGGGGGG+GGG | - | chr5.1:32561944-32561963 | MS.gene066388:intron | 65.0% |
| !! | TATTTTGGGGGGGGGGGGGG+GGG | - | chr5.1:32561945-32561964 | MS.gene066388:intron | 70.0% |
| !! | ATTTTGGGGGGGGGGGGGGG+GGG | - | chr5.1:32561946-32561965 | MS.gene066388:intron | 75.0% |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | - | chr5.1:32561947-32561966 | MS.gene066388:intron | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:32561948-32561967 | MS.gene066388:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:32561949-32561968 | MS.gene066388:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:32561950-32561969 | MS.gene066388:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 32560729 | 32562990 | 32560729 | ID=MS.gene066388 |
| chr5.1 | mRNA | 32560729 | 32562990 | 32560729 | ID=MS.gene066388.t1;Parent=MS.gene066388 |
| chr5.1 | exon | 32562832 | 32562990 | 32562832 | ID=MS.gene066388.t1.exon1;Parent=MS.gene066388.t1 |
| chr5.1 | CDS | 32562832 | 32562990 | 32562832 | ID=cds.MS.gene066388.t1;Parent=MS.gene066388.t1 |
| chr5.1 | exon | 32560729 | 32561331 | 32560729 | ID=MS.gene066388.t1.exon2;Parent=MS.gene066388.t1 |
| chr5.1 | CDS | 32560729 | 32561331 | 32560729 | ID=cds.MS.gene066388.t1;Parent=MS.gene066388.t1 |
| Gene Sequence |
| Protein sequence |
