AlfalfaGEDB | MS.gene26916

M. sativa cultivar XinJiangDaYe / MS.gene26916

KEGG: -
GO: -
PFAM: PF04765.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26916.t1	XP_003589303.2	92.1	469	36	1	1	468	1	469	4.00E-221	777.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26916.t1	G7I5A2	92.1	469	36	1	1	468	1	469	2.8e-221	777.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene26916	0.867225	1.60E-65	-1.69E-46
MS.gene049159	MS.gene26916	0.820376	7.09E-53	-1.69E-46
MS.gene049254	MS.gene26916	0.837254	5.79E-57	-1.69E-46
MS.gene049350	MS.gene26916	0.844977	5.41E-59	-1.69E-46
MS.gene049368	MS.gene26916	0.808475	3.04E-50	-1.69E-46
MS.gene049404	MS.gene26916	0.808213	3.46E-50	-1.69E-46
MS.gene049711	MS.gene26916	0.837755	4.31E-57	-1.69E-46
MS.gene049807	MS.gene26916	0.857367	1.71E-62	-1.69E-46
MS.gene049821	MS.gene26916	0.811305	7.48E-51	-1.69E-46
MS.gene049824	MS.gene26916	0.802523	5.39E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26916.t1	MTR_1g021670	97.447	470	9	2	1	468	1	469	0.0	941
MS.gene26916.t1	MTR_8g055930	41.196	301	161	5	174	459	161	460	4.41e-72	235
MS.gene26916.t1	MTR_1g096320	39.672	305	161	6	174	459	389	689	1.94e-66	226
MS.gene26916.t1	MTR_1g096320	39.672	305	161	6	174	459	395	695	2.91e-66	226
MS.gene26916.t1	MTR_4g088785	39.806	309	171	6	174	468	166	473	5.61e-64	216
MS.gene26916.t1	MTR_8g085850	36.735	294	181	3	173	462	149	441	5.13e-62	209
MS.gene26916.t1	MTR_8g085850	36.735	294	181	3	173	462	158	450	5.77e-62	210
MS.gene26916.t1	MTR_2g013690	38.851	296	170	5	174	459	206	500	6.30e-60	206
MS.gene26916.t1	MTR_8g085850	36.000	300	181	4	173	462	149	447	1.73e-59	203
MS.gene26916.t1	MTR_2g085170	40.328	305	154	9	174	459	227	522	3.31e-58	202

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26916.t1	AT5G42660	64.619	472	149	4	1	466	1	460	0.0	624
MS.gene26916.t1	AT2G02910	42.574	303	161	5	174	465	155	455	8.27e-75	242
MS.gene26916.t1	AT2G02910	42.574	303	161	5	174	465	155	455	8.27e-75	242
MS.gene26916.t1	AT4G38500	33.333	447	253	10	23	462	38	446	2.99e-69	229
MS.gene26916.t1	AT1G34550	39.672	305	161	6	174	459	327	627	7.44e-68	229
MS.gene26916.t1	AT1G34550	39.672	305	161	6	174	459	421	721	1.87e-67	229
MS.gene26916.t1	AT4G09630	39.355	310	165	6	174	464	381	686	6.36e-66	224
MS.gene26916.t1	AT4G09630	39.355	310	165	6	174	464	396	701	7.54e-66	225
MS.gene26916.t1	AT1G53040	40.203	296	167	4	174	459	187	482	5.37e-64	216
MS.gene26916.t1	AT1G53040	40.203	296	167	4	174	459	187	482	5.37e-64	216

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Find 98 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACGACGGCACATTGT+GGG	0.478159	1.3:+3301894	MS.gene26916:CDS
AAACTAGATTCTTCTTCCAC+GGG	0.546495	1.3:-3301572	None:intergenic
AAGAGATTTAATGGAAAGAA+AGG	0.439466	1.3:+3302831	MS.gene26916:CDS
AAGGATCTGGTCAATAGCAT+GGG	0.590506	1.3:+3303306	MS.gene26916:CDS
AATTAGTGGGTCGCAGAGTT+GGG	0.373736	1.3:+3302195	MS.gene26916:CDS
ACACGAATTGGTTTAAGACC+AGG	0.598308	1.3:+3300175	MS.gene26916:CDS
ACAGTGCGAATGGTGGGTTT+AGG	0.412123	1.3:+3301921	MS.gene26916:CDS
ACGAGCTCCATGTTCTGATA+TGG	0.376444	1.3:-3302700	None:intergenic
ACTAAAAGCGCAGGAATTAG+TGG	0.395475	1.3:+3302181	MS.gene26916:CDS
ACTCCAAGTCCCAATTTAGG+AGG	0.588616	1.3:+3302625	MS.gene26916:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTATTTAGTGGTATGC+AGG	+	chr1.3:3302127-3302146	MS.gene26916:intron	30.0%
AAGCAAATTAACCAAGTGTA+TGG	-	chr1.3:3300944-3300963	None:intergenic	30.0%
ACATGTGAGTTAATTCTATC+AGG	+	chr1.3:3301503-3301522	MS.gene26916:intron	30.0%
AGAAGCTTCTTGTTAAATAC+TGG	+	chr1.3:3300104-3300123	MS.gene26916:CDS	30.0%
AGCAAATTAACCAAGTGTAT+GGG	-	chr1.3:3300943-3300962	None:intergenic	30.0%
AGTTCTTTCATTTCACTTCT+AGG	+	chr1.3:3301422-3301441	MS.gene26916:intron	30.0%
ATGAAGTATAGAAAGAGAAG+CGG	-	chr1.3:3302326-3302345	None:intergenic	30.0%
CATCAAAGATGTAATACCTT+GGG	-	chr1.3:3302302-3302321	None:intergenic	30.0%
CTCAAGCAAAATACTCTATT+TGG	+	chr1.3:3302598-3302617	MS.gene26916:CDS	30.0%
CTGAATCAATACAGAAAAGA+TGG	+	chr1.3:3302795-3302814	MS.gene26916:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	3299986	3303362	3299986	ID=MS.gene26916
chr1.3	mRNA	3299986	3303362	3299986	ID=MS.gene26916.t1;Parent=MS.gene26916
chr1.3	exon	3299986	3300331	3299986	ID=MS.gene26916.t1.exon1;Parent=MS.gene26916.t1
chr1.3	CDS	3299986	3300331	3299986	ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1
chr1.3	exon	3301525	3301742	3301525	ID=MS.gene26916.t1.exon2;Parent=MS.gene26916.t1
chr1.3	CDS	3301525	3301742	3301525	ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1
chr1.3	exon	3301887	3302063	3301887	ID=MS.gene26916.t1.exon3;Parent=MS.gene26916.t1
chr1.3	CDS	3301887	3302063	3301887	ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1
chr1.3	exon	3302149	3302304	3302149	ID=MS.gene26916.t1.exon4;Parent=MS.gene26916.t1
chr1.3	CDS	3302149	3302304	3302149	ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1
chr1.3	exon	3302576	3302852	3302576	ID=MS.gene26916.t1.exon5;Parent=MS.gene26916.t1
chr1.3	CDS	3302576	3302852	3302576	ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1
chr1.3	exon	3303130	3303362	3303130	ID=MS.gene26916.t1.exon6;Parent=MS.gene26916.t1
chr1.3	CDS	3303130	3303362	3303130	ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1

Gene Sequence

>MS.gene26916

ATGTTCCACAGCAACACTCTACCGATCTCAATCTCCGACGACGAAACCGATGAACTAGGTCGAATGCGCGTTCGTGCTCGCCGTAAACGAAAGAAACTCGGTAACAAACGTTTCTTCAAGAAGCTTCTTGTTAAATACTGGATGCTACTCATCATTATTCCAGCTGCGTTTTTACTCTTTTACGAGATTACACGAATTGGTTTAAGACCAGGTAGTTCTTCTTCCAACATTGCTTCAACAACGACAAATCAAGATAATCATGATCATCGATCTAAAGAGACCATTGTTAAAACTAACTTGAATCGTCTTGATCCTACTACTCATGTTGTTGCTGGTGTTAGAGAACGTAAGTCCCCCAATCCAAAACCCTTTTTCTTGATTTTTTTTATTTAATTGATTTTGTTGCATTGTTGCTTGATTGAAAGTTAGTTGATTTGCTTGCGGATTTATGTTTGAGAGTGTGTGTGTGTGTGTGTGTGTGTTTGGTTCTGCCGCGTCAAGAATCAATTCTAGTCGAGAGCAACCAATAGTGCAATCAAACATATAGTGAGTGATGCTGATTAGAATTTATTAGAACTTGAAGTTAGGATTTGTAGTTTTCGATTTCGACTCAAAACATGTTTTTTACACTCAAATTTGCCTTTCAACTCACTTTTATGGAGATGCGTGTATGTTTGGATTGGCCATGGATCACCCATTGTCACTTCTCAATGCATGTGGGCTATGCTTTTGTTAAAGTTTTCGTAGTGTAGCTTTTGCACTACCGTGATTCAATGCTCTGTTTGTTTCTGCGGTGCACCAAGCACAGACGCACATTCTGCCTAAAACCACTATTTTGAGCTTCTTAGAAATCAGTCAAATCACGGTAATTGAGCATTGGGACACGATGTTTGTGCTCCCACCACCAAACCAAACAGCCACTTCGGGATGCAATTCTGTCAAATTCATTGTTAACCCATACACTTGGTTAATTTGCTTGCGGGTTTATGTTTGAATTTACAAAAAATAAGTTCATTTTTTGATGTAAGTAAAAATAAACGTCCGGAGTCTAAAGCTCCAATTTTCAGCTTGAATTAGAATCAATTCTAGATGCAAAAACAATTATCCACGAAAGCATTCAAACATGTCAAAATCAATTGTGTTTTTAGAAAGGCTTTTGTCGGTATGTAGAGAGAAGACCTGTATGTTTTGTGGTAAGGAGAGTAGACATGTAGATTTTGTAGTAAGGAGAGTAAATCAGATGGAGGGTAGTTAAATCACTAGAGGCAGAGGAAGTCCTACAAAAACTAAATGGAAAACTATTATGAAAACTCGATTAATGAGTTTGGTTAAGATATGTGAGAGAACATTATGCCTTGATTGTTGTTGTTTGTAGAAATACTTTTGTTGGACTATCATAAAGTGAATTCAAATAGGCACTTATTTTTACTGTCCTTAGTTCTTTCATTTCACTTCTAGGAATGAGTGAGGTTGTGTATTTTATTTTGATAAAACTTAAGGAGGCGGTGTTGTGTATGACATGTGAGTTAATTCTATCAGGTTGCTTGAAGCTTCTACCACCTGAAAAACTTGAGCAACTAGAGATTCCCGTGGAAGAAGAATCTAGTTTACCTATTGGTAAAGTCTTGTATATGTCAGCGACTGATGCGTCTTTAATAGGAGGGAATGCTACATTGTCTCAATTGCGTGCAGAGGATACAAGTTTTAATTTATTTACTGGAAACCAAACATTTGAGGAAAGAGATAGAAGTTTTGAGGTGATTGGTGCTGCTTATATTATTTTCGCCCAGATTAATTTTAATTCACATTTTTTGCTACTTGTTTTGCCCTACTGGATACGCTTGGTTGTAGTTATATATTATTATAAGTAATATAGTTTGGTTTCTTTCTTCATTGTATAGGTGAAAGAAACTACGACGGCACATTGTGGGTTCTACAGTGCGAATGGTGGGTTTAGGATATCAGATGAAAATAAAAGTTTCATGCAAGGTTGCAAAGTGGTTGTATCTACTTGTGCATTTGGTGGCGGAGATGATCTCTATCAACCGATTGGAATGTCAGAGGCTTCACTTAAGAAGGTTATTTAAGTAGTATAAGACTTTATTCTTGACATATCTTAGAAGTCAATAATCTTATTTGCCAAATCTATTTAGTGGTATGCAGGTTTGCTATGTAGCATTCTGGGATGAAATCACACTAAAAGCGCAGGAATTAGTGGGTCGCAGAGTTGGGGATAATGGATTTGTTGGAAAGTGGCGTGTTATTGTCGTTCAGGATCTTCCTTTTTCTGATCAAAGGTTGAATGGTAAAATTCCCAAGGTATTACATCTTTGATGCCCGCTTCTCTTTCTATACTTCATTTGCTATATTTTGATTATGTTTCATATGCATAGTTTTTGTTTTGCTGCACTTTCACATGCCCTACCAAAATGTTCTCACAAGATTCCTAATTTTTCCATTTGCTGATATTTGAATCATGTATAAAATATTTGTTGTCTTCATTAACCCCATGGGGGTACTTTCCTCTTAGAAAGCTTTTTTTGTTATTTGTTTCCTTTTTCAACCACGTGTGGGCTTGGATATCTTTCAGATGTTAAGCCATCGCCTTTTCCCTCAAGCAAAATACTCTATTTGGGTAGACTCCAAGTCCCAATTTAGGAGGGACCCACTAGGTGTGTTGGAAGCGCTCCTTTGGCGCACAAGTTCTGTACTTGCCATATCAGAACATGGAGCTCGTAGTAGTGTCTATGATGAGGCTAAGGCCGTTGTCAGGAAAAACAAAGCGAAGCCAGAGGAAGTTGAAGTGCAACTGAATCAATACAGAAAAGATGGCATGCCTGTAGACAAGAGATTTAATGGAAAGAAAGGTATAAACTGATTATATTTTCATTAGCTAACAGTAATTTTAACATTTTATCTTCTTTTCTTCATACAGAAAAATTTCTGTTCTGTTTTATCCAAGATTTTGCTGTCATATTTTCAATTGATATTGTTGATAGGCTATAGTTGTATCAATGTATGTTGATAGATGCCAATCTTCTCATCTAGTCTGTTGACAAACTTTGAGTTCCACTGATTCAACTTTTTATCAATCATTGCATCGCACCAATATTTTATAATGTTGAATCAAACTTGTTTTTGCAGCTCTATGTGAAGCCTCTGTTATCGTCAGGAAGCATACGCCACTAACTAATCTATTGATGTGCGTCTGGTTTAATGAGGTGGTTCGCTTCACGTCTAGGGATCAGCTCAGCTTCCCATATGTTCTGTGGCGGTTGAAAGCATTCAAAAACATTAACATGTTCCCTGTCTGCACTCGCAAGGATCTGGTCAATAGCATGGGACACATCCGCAAAGCAAAACCATTGCAAAGCTGA

Protein sequence

>MS.gene26916.t1

MFHSNTLPISISDDETDELGRMRVRARRKRKKLGNKRFFKKLLVKYWMLLIIIPAAFLLFYEITRIGLRPGSSSSNIASTTTNQDNHDHRSKETIVKTNLNRLDPTTHVVAGVRERCLKLLPPEKLEQLEIPVEEESSLPIGKVLYMSATDASLIGGNATLSQLRAEDTSFNLFTGNQTFEERDRSFEVKETTTAHCGFYSANGGFRISDENKSFMQGCKVVVSTCAFGGGDDLYQPIGMSEASLKKVCYVAFWDEITLKAQELVGRRVGDNGFVGKWRVIVVQDLPFSDQRLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWRTSSVLAISEHGARSSVYDEAKAVVRKNKAKPEEVEVQLNQYRKDGMPVDKRFNGKKALCEASVIVRKHTPLTNLLMCVWFNEVVRFTSRDQLSFPYVLWRLKAFKNINMFPVCTRKDLVNSMGHIRKAKPLQS