Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26916.t1 | XP_003589303.2 | 92.1 | 469 | 36 | 1 | 1 | 468 | 1 | 469 | 4.00E-221 | 777.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26916.t1 | G7I5A2 | 92.1 | 469 | 36 | 1 | 1 | 468 | 1 | 469 | 2.8e-221 | 777.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26916 | 0.867225 | 1.60E-65 | -1.69E-46 |
| MS.gene049159 | MS.gene26916 | 0.820376 | 7.09E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene26916 | 0.837254 | 5.79E-57 | -1.69E-46 |
| MS.gene049350 | MS.gene26916 | 0.844977 | 5.41E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene26916 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene26916 | 0.808213 | 3.46E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene26916 | 0.837755 | 4.31E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene26916 | 0.857367 | 1.71E-62 | -1.69E-46 |
| MS.gene049821 | MS.gene26916 | 0.811305 | 7.48E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene26916 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene26916 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene26916 | 0.831915 | 1.27E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene26916 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene26916 | 0.806657 | 7.39E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene26916 | 0.809931 | 1.48E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene26916 | 0.807044 | 6.13E-50 | -1.69E-46 |
| MS.gene05045 | MS.gene26916 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene26916 | 0.80933 | 2.00E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene26916 | 0.816289 | 5.97E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene26916 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene26916 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene26916 | 0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene26916 | 0.806019 | 1.01E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene26916 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene26916 | 0.841257 | 5.30E-58 | -1.69E-46 |
| MS.gene051279 | MS.gene26916 | 0.846757 | 1.78E-59 | -1.69E-46 |
| MS.gene05157 | MS.gene26916 | 0.800601 | 1.33E-48 | -1.69E-46 |
| MS.gene051628 | MS.gene26916 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene051664 | MS.gene26916 | 0.808743 | 2.67E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene26916 | 0.835711 | 1.43E-56 | -1.69E-46 |
| MS.gene051719 | MS.gene26916 | 0.827135 | 1.85E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene26916 | 0.831202 | 1.91E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene26916 | 0.850273 | 1.89E-60 | -1.69E-46 |
| MS.gene051957 | MS.gene26916 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene052133 | MS.gene26916 | 0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene26916 | -0.809612 | 1.74E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene26916 | 0.830504 | 2.83E-55 | -1.69E-46 |
| MS.gene052335 | MS.gene26916 | 0.815656 | 8.27E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene26916 | 0.835873 | 1.30E-56 | -1.69E-46 |
| MS.gene052514 | MS.gene26916 | 0.800223 | 1.59E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene26916 | 0.875949 | 2.06E-68 | -1.69E-46 |
| MS.gene052519 | MS.gene26916 | 0.829715 | 4.41E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene26916 | 0.823804 | 1.14E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene26916 | 0.828424 | 9.06E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene26916 | 0.825948 | 3.55E-54 | -1.69E-46 |
| MS.gene052611 | MS.gene26916 | 0.827076 | 1.91E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene26916 | 0.837275 | 5.72E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene26916 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene26916 | 0.841974 | 3.43E-58 | -1.69E-46 |
| MS.gene053122 | MS.gene26916 | 0.835032 | 2.12E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene26916 | 0.863619 | 2.19E-64 | -1.69E-46 |
| MS.gene053226 | MS.gene26916 | 0.874686 | 5.56E-68 | -1.69E-46 |
| MS.gene053581 | MS.gene26916 | 0.813238 | 2.83E-51 | -1.69E-46 |
| MS.gene053597 | MS.gene26916 | 0.805206 | 1.49E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene26916 | 0.837772 | 4.27E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene26916 | 0.852135 | 5.63E-61 | -1.69E-46 |
| MS.gene054584 | MS.gene26916 | 0.85273 | 3.81E-61 | -1.69E-46 |
| MS.gene05458 | MS.gene26916 | 0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene26916 | 0.85797 | 1.14E-62 | -1.69E-46 |
| MS.gene054991 | MS.gene26916 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene055083 | MS.gene26916 | 0.806272 | 8.92E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene26916 | 0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene26916 | 0.839301 | 1.72E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene26916 | 0.843408 | 1.43E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene26916 | 0.84016 | 1.03E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene26916 | 0.821037 | 4.99E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene26916 | 0.83361 | 4.83E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene26916 | 0.847203 | 1.34E-59 | -1.69E-46 |
| MS.gene055537 | MS.gene26916 | 0.806189 | 9.28E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene26916 | -0.841311 | 5.13E-58 | -1.69E-46 |
| MS.gene055778 | MS.gene26916 | 0.808045 | 3.76E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene26916 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene26916 | 0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene26916 | 0.809013 | 2.33E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene26916 | -0.822321 | 2.52E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene26916 | 0.809438 | 1.89E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene26916 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene26916 | 0.816855 | 4.46E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene26916 | 0.854255 | 1.39E-61 | -1.69E-46 |
| MS.gene056366 | MS.gene26916 | 0.815344 | 9.70E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene26916 | 0.812726 | 3.67E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene26916 | 0.810706 | 1.01E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene26916 | 0.845922 | 3.00E-59 | -1.69E-46 |
| MS.gene056699 | MS.gene26916 | 0.819384 | 1.19E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene26916 | 0.825763 | 3.93E-54 | -1.69E-46 |
| MS.gene05690 | MS.gene26916 | 0.849172 | 3.84E-60 | -1.69E-46 |
| MS.gene057034 | MS.gene26916 | 0.836922 | 7.04E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene26916 | 0.840686 | 7.49E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene26916 | 0.819804 | 9.58E-53 | -1.69E-46 |
| MS.gene057294 | MS.gene26916 | 0.816378 | 5.70E-52 | -1.69E-46 |
| MS.gene057314 | MS.gene26916 | 0.815951 | 7.11E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene26916 | 0.843021 | 1.81E-58 | -1.69E-46 |
| MS.gene057446 | MS.gene26916 | 0.819629 | 1.05E-52 | -1.69E-46 |
| MS.gene057855 | MS.gene26916 | 0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene26916 | 0.850331 | 1.82E-60 | -1.69E-46 |
| MS.gene058008 | MS.gene26916 | 0.81266 | 3.79E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene26916 | 0.819721 | 1.00E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene26916 | 0.837891 | 3.98E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene26916 | 0.860846 | 1.55E-63 | -1.69E-46 |
| MS.gene058636 | MS.gene26916 | 0.807532 | 4.83E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene26916 | 0.822322 | 2.52E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene26916 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene26916 | 0.824702 | 7.00E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene26916 | 0.812928 | 3.31E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene26916 | 0.810009 | 1.43E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene26916 | 0.800912 | 1.15E-48 | -1.69E-46 |
| MS.gene059570 | MS.gene26916 | 0.821911 | 3.14E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene26916 | 0.830864 | 2.31E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene26916 | 0.814189 | 1.75E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene26916 | 0.814689 | 1.36E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene26916 | 0.831784 | 1.37E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene26916 | 0.80962 | 1.73E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene26916 | 0.800169 | 1.63E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene26916 | 0.807119 | 5.91E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene26916 | 0.834224 | 3.39E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene26916 | 0.800659 | 1.30E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene26916 | 0.843429 | 1.41E-58 | -1.69E-46 |
| MS.gene061160 | MS.gene26916 | 0.803584 | 3.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26916.t1 | MTR_1g021670 | 97.447 | 470 | 9 | 2 | 1 | 468 | 1 | 469 | 0.0 | 941 |
| MS.gene26916.t1 | MTR_8g055930 | 41.196 | 301 | 161 | 5 | 174 | 459 | 161 | 460 | 4.41e-72 | 235 |
| MS.gene26916.t1 | MTR_1g096320 | 39.672 | 305 | 161 | 6 | 174 | 459 | 389 | 689 | 1.94e-66 | 226 |
| MS.gene26916.t1 | MTR_1g096320 | 39.672 | 305 | 161 | 6 | 174 | 459 | 395 | 695 | 2.91e-66 | 226 |
| MS.gene26916.t1 | MTR_4g088785 | 39.806 | 309 | 171 | 6 | 174 | 468 | 166 | 473 | 5.61e-64 | 216 |
| MS.gene26916.t1 | MTR_8g085850 | 36.735 | 294 | 181 | 3 | 173 | 462 | 149 | 441 | 5.13e-62 | 209 |
| MS.gene26916.t1 | MTR_8g085850 | 36.735 | 294 | 181 | 3 | 173 | 462 | 158 | 450 | 5.77e-62 | 210 |
| MS.gene26916.t1 | MTR_2g013690 | 38.851 | 296 | 170 | 5 | 174 | 459 | 206 | 500 | 6.30e-60 | 206 |
| MS.gene26916.t1 | MTR_8g085850 | 36.000 | 300 | 181 | 4 | 173 | 462 | 149 | 447 | 1.73e-59 | 203 |
| MS.gene26916.t1 | MTR_2g085170 | 40.328 | 305 | 154 | 9 | 174 | 459 | 227 | 522 | 3.31e-58 | 202 |
| MS.gene26916.t1 | MTR_8g055930 | 40.741 | 216 | 120 | 3 | 174 | 382 | 161 | 375 | 1.17e-50 | 177 |
| MS.gene26916.t1 | MTR_2g019450 | 32.653 | 294 | 183 | 9 | 164 | 447 | 107 | 395 | 6.63e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26916.t1 | AT5G42660 | 64.619 | 472 | 149 | 4 | 1 | 466 | 1 | 460 | 0.0 | 624 |
| MS.gene26916.t1 | AT2G02910 | 42.574 | 303 | 161 | 5 | 174 | 465 | 155 | 455 | 8.27e-75 | 242 |
| MS.gene26916.t1 | AT2G02910 | 42.574 | 303 | 161 | 5 | 174 | 465 | 155 | 455 | 8.27e-75 | 242 |
| MS.gene26916.t1 | AT4G38500 | 33.333 | 447 | 253 | 10 | 23 | 462 | 38 | 446 | 2.99e-69 | 229 |
| MS.gene26916.t1 | AT1G34550 | 39.672 | 305 | 161 | 6 | 174 | 459 | 327 | 627 | 7.44e-68 | 229 |
| MS.gene26916.t1 | AT1G34550 | 39.672 | 305 | 161 | 6 | 174 | 459 | 421 | 721 | 1.87e-67 | 229 |
| MS.gene26916.t1 | AT4G09630 | 39.355 | 310 | 165 | 6 | 174 | 464 | 381 | 686 | 6.36e-66 | 224 |
| MS.gene26916.t1 | AT4G09630 | 39.355 | 310 | 165 | 6 | 174 | 464 | 396 | 701 | 7.54e-66 | 225 |
| MS.gene26916.t1 | AT1G53040 | 40.203 | 296 | 167 | 4 | 174 | 459 | 187 | 482 | 5.37e-64 | 216 |
| MS.gene26916.t1 | AT1G53040 | 40.203 | 296 | 167 | 4 | 174 | 459 | 187 | 482 | 5.37e-64 | 216 |
| MS.gene26916.t1 | AT1G53040 | 40.203 | 296 | 167 | 4 | 174 | 459 | 187 | 482 | 5.37e-64 | 216 |
| MS.gene26916.t1 | AT1G53040 | 40.678 | 295 | 163 | 5 | 174 | 457 | 187 | 480 | 8.05e-64 | 214 |
| MS.gene26916.t1 | AT1G53040 | 40.678 | 295 | 163 | 5 | 174 | 457 | 187 | 480 | 8.05e-64 | 214 |
| MS.gene26916.t1 | AT1G28240 | 38.926 | 298 | 167 | 7 | 174 | 459 | 214 | 508 | 7.89e-61 | 209 |
| MS.gene26916.t1 | AT1G53040 | 40.000 | 215 | 121 | 3 | 174 | 381 | 187 | 400 | 3.80e-44 | 160 |
| MS.gene26916.t1 | AT5G46220 | 30.000 | 290 | 189 | 7 | 153 | 432 | 97 | 382 | 2.36e-35 | 137 |
Find 98 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGCAAAATACTCTATT+TGG | 0.077140 | 1.3:+3302598 | MS.gene26916:CDS |
| CTAGTGGGTCCCTCCTAAAT+TGG | 0.222026 | 1.3:-3302635 | None:intergenic |
| AGAAGCTTCTTGTTAAATAC+TGG | 0.261001 | 1.3:+3300104 | MS.gene26916:CDS |
| TTCAACCTTTGATCAGAAAA+AGG | 0.262613 | 1.3:-3302266 | None:intergenic |
| CCTGTAGACAAGAGATTTAA+TGG | 0.266147 | 1.3:+3302822 | MS.gene26916:CDS |
| TATCTCTTTCCTCAAATGTT+TGG | 0.307680 | 1.3:-3301709 | None:intergenic |
| TACCGAGTTTCTTTCGTTTA+CGG | 0.350045 | 1.3:-3300066 | None:intergenic |
| GCGACTGATGCGTCTTTAAT+AGG | 0.361138 | 1.3:+3301623 | MS.gene26916:CDS |
| AGGTTTGCTATGTAGCATTC+TGG | 0.362293 | 1.3:+3302147 | MS.gene26916:intron |
| GGTCGCAGAGTTGGGGATAA+TGG | 0.363714 | 1.3:+3302203 | MS.gene26916:CDS |
| GTGGCGTGTTATTGTCGTTC+AGG | 0.366914 | 1.3:+3302238 | MS.gene26916:CDS |
| GTTGTATCTACTTGTGCATT+TGG | 0.368333 | 1.3:+3301986 | MS.gene26916:CDS |
| TAGACTCCAAGTCCCAATTT+AGG | 0.368651 | 1.3:+3302622 | MS.gene26916:CDS |
| AATTAGTGGGTCGCAGAGTT+GGG | 0.373736 | 1.3:+3302195 | MS.gene26916:CDS |
| CCATTAAATCTCTTGTCTAC+AGG | 0.375251 | 1.3:-3302822 | None:intergenic |
| ACGAGCTCCATGTTCTGATA+TGG | 0.376444 | 1.3:-3302700 | None:intergenic |
| GTTGGGGATAATGGATTTGT+TGG | 0.377221 | 1.3:+3302212 | MS.gene26916:CDS |
| TTCAACCGCCACAGAACATA+TGG | 0.378529 | 1.3:-3303243 | None:intergenic |
| GAAGAATCTAGTTTACCTAT+TGG | 0.384777 | 1.3:+3301581 | MS.gene26916:CDS |
| ACTAAAAGCGCAGGAATTAG+TGG | 0.395475 | 1.3:+3302181 | MS.gene26916:CDS |
| TCAAGCAAAATACTCTATTT+GGG | 0.399723 | 1.3:+3302599 | MS.gene26916:CDS |
| CCTACTACTCATGTTGTTGC+TGG | 0.399883 | 1.3:+3300298 | MS.gene26916:CDS |
| CTAATCTATTGATGTGCGTC+TGG | 0.401746 | 1.3:+3303175 | MS.gene26916:CDS |
| ACAGTGCGAATGGTGGGTTT+AGG | 0.412123 | 1.3:+3301921 | MS.gene26916:CDS |
| AGTTGCACTTCAACTTCCTC+TGG | 0.414058 | 1.3:-3302774 | None:intergenic |
| GAATTAGTGGGTCGCAGAGT+TGG | 0.426550 | 1.3:+3302194 | MS.gene26916:CDS |
| AAGAGATTTAATGGAAAGAA+AGG | 0.439466 | 1.3:+3302831 | MS.gene26916:CDS |
| TGTCTGCACTCGCAAGGATC+TGG | 0.451591 | 1.3:+3303293 | MS.gene26916:CDS |
| GTGTGTTGGAAGCGCTCCTT+TGG | 0.451902 | 1.3:+3302658 | MS.gene26916:CDS |
| AGGTGGTTCGCTTCACGTCT+AGG | 0.456871 | 1.3:+3303205 | MS.gene26916:CDS |
| TAGTGGGTCCCTCCTAAATT+GGG | 0.459505 | 1.3:-3302634 | None:intergenic |
| TACTGGAAACCAAACATTTG+AGG | 0.460309 | 1.3:+3301700 | MS.gene26916:CDS |
| CTGAATCAATACAGAAAAGA+TGG | 0.467593 | 1.3:+3302795 | MS.gene26916:CDS |
| GTCAGAGGCTTCACTTAAGA+AGG | 0.470559 | 1.3:+3302042 | MS.gene26916:CDS |
| GGTTTGCTATGTAGCATTCT+GGG | 0.477968 | 1.3:+3302148 | MS.gene26916:intron |
| AAACTACGACGGCACATTGT+GGG | 0.478159 | 1.3:+3301894 | MS.gene26916:CDS |
| ATGAGGCTAAGGCCGTTGTC+AGG | 0.480704 | 1.3:+3302736 | MS.gene26916:CDS |
| GTCCCTCCTAAATTGGGACT+TGG | 0.482377 | 1.3:-3302628 | None:intergenic |
| CACATCAATAGATTAGTTAG+TGG | 0.489792 | 1.3:-3303168 | None:intergenic |
| CCAGCAACAACATGAGTAGT+AGG | 0.491549 | 1.3:-3300298 | None:intergenic |
| ATAATGGATTTGTTGGAAAG+TGG | 0.493171 | 1.3:+3302219 | MS.gene26916:CDS |
| GGTGGTTCGCTTCACGTCTA+GGG | 0.510231 | 1.3:+3303206 | MS.gene26916:CDS |
| GTGAAGCCTCTGTTATCGTC+AGG | 0.511246 | 1.3:+3303136 | MS.gene26916:CDS |
| TAGTTCATCGGTTTCGTCGT+CGG | 0.511725 | 1.3:-3300020 | None:intergenic |
| TAACTAAATCAGCTTTGCAA+TGG | 0.522702 | 1.3:-3303348 | None:intergenic |
| ATATACAAGACTTTACCAAT+AGG | 0.522988 | 1.3:-3301596 | None:intergenic |
| TAAACTAGATTCTTCTTCCA+CGG | 0.523311 | 1.3:-3301573 | None:intergenic |
| GATGATCTCTATCAACCGAT+TGG | 0.532985 | 1.3:+3302016 | MS.gene26916:CDS |
| GTATCTACTTGTGCATTTGG+TGG | 0.539522 | 1.3:+3301989 | MS.gene26916:CDS |
| GAAAATAAAAGTTTCATGCA+AGG | 0.540132 | 1.3:+3301953 | MS.gene26916:CDS |
| AGATCCTTGCGAGTGCAGAC+AGG | 0.541955 | 1.3:-3303291 | None:intergenic |
| TGTCGTTGTTGAAGCAATGT+TGG | 0.543414 | 1.3:-3300209 | None:intergenic |
| AAACTAGATTCTTCTTCCAC+GGG | 0.546495 | 1.3:-3301572 | None:intergenic |
| GACGACGAAACCGATGAACT+AGG | 0.549148 | 1.3:+3300022 | MS.gene26916:CDS |
| CAAGGATCTGGTCAATAGCA+TGG | 0.556262 | 1.3:+3303305 | MS.gene26916:CDS |
| GAGGGACCCACTAGGTGTGT+TGG | 0.558276 | 1.3:+3302644 | MS.gene26916:CDS |
| TCTACTTGTGCATTTGGTGG+CGG | 0.565708 | 1.3:+3301992 | MS.gene26916:CDS |
| GTACAGAACTTGTGCGCCAA+AGG | 0.567215 | 1.3:-3302674 | None:intergenic |
| TAGTGTCTATGATGAGGCTA+AGG | 0.569258 | 1.3:+3302725 | MS.gene26916:CDS |
| GTTCCCTGTCTGCACTCGCA+AGG | 0.571226 | 1.3:+3303287 | MS.gene26916:CDS |
| ACTGATGCGTCTTTAATAGG+AGG | 0.575647 | 1.3:+3301626 | MS.gene26916:CDS |
| TTGCTTGAGGGAAAAGGCGA+TGG | 0.577341 | 1.3:-3302584 | None:intergenic |
| GAAGCCTCTGACATTCCAAT+CGG | 0.578839 | 1.3:-3302031 | None:intergenic |
| GTGCGTCTGGTTTAATGAGG+TGG | 0.582996 | 1.3:+3303188 | MS.gene26916:CDS |
| TCAACCGCCACAGAACATAT+GGG | 0.583405 | 1.3:-3303242 | None:intergenic |
| TGAAATCACACTAAAAGCGC+AGG | 0.586944 | 1.3:+3302172 | MS.gene26916:CDS |
| ATTAGTGGGTCGCAGAGTTG+GGG | 0.587159 | 1.3:+3302196 | MS.gene26916:CDS |
| ACTCCAAGTCCCAATTTAGG+AGG | 0.588616 | 1.3:+3302625 | MS.gene26916:CDS |
| CGCCGTAAACGAAAGAAACT+CGG | 0.589754 | 1.3:+3300064 | MS.gene26916:CDS |
| AAGGATCTGGTCAATAGCAT+GGG | 0.590506 | 1.3:+3303306 | MS.gene26916:CDS |
| GGTTCTACAGTGCGAATGGT+GGG | 0.594182 | 1.3:+3301915 | MS.gene26916:CDS |
| TCGTCGTCGGAGATTGAGAT+CGG | 0.596070 | 1.3:-3300007 | None:intergenic |
| ACACGAATTGGTTTAAGACC+AGG | 0.598308 | 1.3:+3300175 | MS.gene26916:CDS |
| GCGCATTCGACCTAGTTCAT+CGG | 0.599118 | 1.3:-3300032 | None:intergenic |
| GATCCTTGCGAGTGCAGACA+GGG | 0.600367 | 1.3:-3303290 | None:intergenic |
| GAAACTACGACGGCACATTG+TGG | 0.606798 | 1.3:+3301893 | MS.gene26916:CDS |
| CAATTTAGGAGGGACCCACT+AGG | 0.609024 | 1.3:+3302636 | MS.gene26916:CDS |
| CTCCAAGTCCCAATTTAGGA+GGG | 0.612198 | 1.3:+3302626 | MS.gene26916:CDS |
| GGGTTCTACAGTGCGAATGG+TGG | 0.617468 | 1.3:+3301914 | MS.gene26916:CDS |
| AGCGCTTCCAACACACCTAG+TGG | 0.619009 | 1.3:-3302651 | None:intergenic |
| GTTGAATGGTAAAATTCCCA+AGG | 0.623439 | 1.3:+3302283 | MS.gene26916:CDS |
| ATTGTCTCAATTGCGTGCAG+AGG | 0.623452 | 1.3:+3301658 | MS.gene26916:CDS |
| CTAAAAGCGCAGGAATTAGT+GGG | 0.625147 | 1.3:+3302182 | MS.gene26916:CDS |
| TCGTAGTAGTGTCTATGATG+AGG | 0.628284 | 1.3:+3302719 | MS.gene26916:CDS |
| GATGTGCGTCTGGTTTAATG+AGG | 0.632480 | 1.3:+3303185 | MS.gene26916:CDS |
| CTGATGCGTCTTTAATAGGA+GGG | 0.632733 | 1.3:+3301627 | MS.gene26916:CDS |
| TCAGCTTCCCATATGTTCTG+TGG | 0.637981 | 1.3:+3303235 | MS.gene26916:CDS |
| TGTGGGTTCTACAGTGCGAA+TGG | 0.652523 | 1.3:+3301911 | MS.gene26916:CDS |
| GCGCTTCCAACACACCTAGT+GGG | 0.655267 | 1.3:-3302650 | None:intergenic |
| GCTTCCCATATGTTCTGTGG+CGG | 0.655449 | 1.3:+3303238 | MS.gene26916:CDS |
| GTACTTGCCATATCAGAACA+TGG | 0.661039 | 1.3:+3302693 | MS.gene26916:CDS |
| TTTCATGCAAGGTTGCAAAG+TGG | 0.666633 | 1.3:+3301964 | MS.gene26916:CDS |
| TCAACCGATTGGAATGTCAG+AGG | 0.688554 | 1.3:+3302027 | MS.gene26916:CDS |
| AGATCGGTAGAGTGTTGCTG+TGG | 0.705202 | 1.3:-3299991 | None:intergenic |
| TGAGCAACTAGAGATTCCCG+TGG | 0.719886 | 1.3:+3301556 | MS.gene26916:CDS |
| ATGTTGGAAGAAGAACTACC+TGG | 0.722649 | 1.3:-3300193 | None:intergenic |
| ATGCTTCCTGACGATAACAG+AGG | 0.723941 | 1.3:-3303142 | None:intergenic |
| ATAGGTGAAAGAAACTACGA+CGG | 0.775814 | 1.3:+3301883 | MS.gene26916:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAATCAAGAAAA+AGG | - | chr1.3:3300356-3300375 | None:intergenic | 10.0% |
| !! | ATAAAAAAAATCAAGAAAAA+GGG | - | chr1.3:3300355-3300374 | None:intergenic | 10.0% |
| !! | TTATTATAAGTAATATAGTT+TGG | + | chr1.3:3301844-3301863 | MS.gene26916:intron | 10.0% |
| !!! | TTTTATTTTGATAAAACTTA+AGG | + | chr1.3:3301463-3301482 | MS.gene26916:intron | 10.0% |
| !! | AATGTGAATTAAAATTAATC+TGG | - | chr1.3:3301775-3301794 | None:intergenic | 15.0% |
| !! | ATGTGAATTAAAATTAATCT+GGG | - | chr1.3:3301774-3301793 | None:intergenic | 15.0% |
| !! | GATTCAACATTATAAAATAT+TGG | - | chr1.3:3303094-3303113 | None:intergenic | 15.0% |
| !!! | ACAAGTTTTAATTTATTTAC+TGG | + | chr1.3:3301683-3301702 | MS.gene26916:CDS | 15.0% |
| !! | ATCATAAAGTGAATTCAAAT+AGG | + | chr1.3:3301379-3301398 | MS.gene26916:intron | 20.0% |
| !! | ATTTATTAGAACTTGAAGTT+AGG | + | chr1.3:3300551-3300570 | MS.gene26916:intron | 20.0% |
| !! | TTTCAATTGATATTGTTGAT+AGG | + | chr1.3:3302963-3302982 | MS.gene26916:intron | 20.0% |
| !!! | AATCAATTGTGTTTTTAGAA+AGG | + | chr1.3:3301116-3301135 | MS.gene26916:intron | 20.0% |
| !!! | ATTCAAGTTAGTTTTAACAA+TGG | - | chr1.3:3300269-3300288 | None:intergenic | 20.0% |
| !!! | TATTTTGATAAAACTTAAGG+AGG | + | chr1.3:3301466-3301485 | MS.gene26916:intron | 20.0% |
| ! | AAAATATGACAGCAAAATCT+TGG | - | chr1.3:3302946-3302965 | None:intergenic | 25.0% |
| ! | AACAAAAAAAGCTTTCTAAG+AGG | - | chr1.3:3302511-3302530 | None:intergenic | 25.0% |
| ! | AAGAGATTTAATGGAAAGAA+AGG | + | chr1.3:3302831-3302850 | MS.gene26916:CDS | 25.0% |
| ! | ATATACAAGACTTTACCAAT+AGG | - | chr1.3:3301599-3301618 | None:intergenic | 25.0% |
| ! | ATGATTCAAATATCAGCAAA+TGG | - | chr1.3:3302444-3302463 | None:intergenic | 25.0% |
| ! | GAAAATAAAAGTTTCATGCA+AGG | + | chr1.3:3301953-3301972 | MS.gene26916:CDS | 25.0% |
| ! | TATATGTTTGATTGCACTAT+TGG | - | chr1.3:3300512-3300531 | None:intergenic | 25.0% |
| ! | TATCAGCAAATGGAAAAATT+AGG | - | chr1.3:3302434-3302453 | None:intergenic | 25.0% |
| ! | TATTTGCCAAATCTATTTAG+TGG | + | chr1.3:3302119-3302138 | MS.gene26916:intron | 25.0% |
| ! | TCAAGCAAAATACTCTATTT+GGG | + | chr1.3:3302599-3302618 | MS.gene26916:CDS | 25.0% |
| ! | TGTAAGTAAAAATAAACGTC+CGG | + | chr1.3:3301008-3301027 | MS.gene26916:intron | 25.0% |
| ! | TTCTAATTCAAGCTGAAAAT+TGG | - | chr1.3:3301045-3301064 | None:intergenic | 25.0% |
| ! | TTGATAAAAAGTTGAATCAG+TGG | - | chr1.3:3303058-3303077 | None:intergenic | 25.0% |
| !! | AAAATCAAGAAAAAGGGTTT+TGG | - | chr1.3:3300349-3300368 | None:intergenic | 25.0% |
| !! | GTTTGTAGAAATACTTTTGT+TGG | + | chr1.3:3301353-3301372 | MS.gene26916:intron | 25.0% |
| !!! | AAATAGAGTATTTTGCTTGA+GGG | - | chr1.3:3302599-3302618 | None:intergenic | 25.0% |
| !!! | GTTTTCCATTTAGTTTTTGT+AGG | - | chr1.3:3301265-3301284 | None:intergenic | 25.0% |
| AAATCTATTTAGTGGTATGC+AGG | + | chr1.3:3302127-3302146 | MS.gene26916:intron | 30.0% | |
| AAGCAAATTAACCAAGTGTA+TGG | - | chr1.3:3300944-3300963 | None:intergenic | 30.0% | |
| ACATGTGAGTTAATTCTATC+AGG | + | chr1.3:3301503-3301522 | MS.gene26916:intron | 30.0% | |
| AGAAGCTTCTTGTTAAATAC+TGG | + | chr1.3:3300104-3300123 | MS.gene26916:CDS | 30.0% | |
| AGCAAATTAACCAAGTGTAT+GGG | - | chr1.3:3300943-3300962 | None:intergenic | 30.0% | |
| AGTTCTTTCATTTCACTTCT+AGG | + | chr1.3:3301422-3301441 | MS.gene26916:intron | 30.0% | |
| ATGAAGTATAGAAAGAGAAG+CGG | - | chr1.3:3302326-3302345 | None:intergenic | 30.0% | |
| CATCAAAGATGTAATACCTT+GGG | - | chr1.3:3302302-3302321 | None:intergenic | 30.0% | |
| CTCAAGCAAAATACTCTATT+TGG | + | chr1.3:3302598-3302617 | MS.gene26916:CDS | 30.0% | |
| CTGAATCAATACAGAAAAGA+TGG | + | chr1.3:3302795-3302814 | MS.gene26916:CDS | 30.0% | |
| CTTAGAAATCAGTCAAATCA+CGG | + | chr1.3:3300829-3300848 | MS.gene26916:intron | 30.0% | |
| GAAAACTCGATTAATGAGTT+TGG | + | chr1.3:3301291-3301310 | MS.gene26916:intron | 30.0% | |
| GAAGTCCTACAAAAACTAAA+TGG | + | chr1.3:3301257-3301276 | MS.gene26916:intron | 30.0% | |
| GAAGTGAAATGAAAGAACTA+AGG | - | chr1.3:3301421-3301440 | None:intergenic | 30.0% | |
| GGTTTCTTTCTTCATTGTAT+AGG | + | chr1.3:3301865-3301884 | MS.gene26916:intron | 30.0% | |
| TAAACTAGATTCTTCTTCCA+CGG | - | chr1.3:3301576-3301595 | None:intergenic | 30.0% | |
| TATCTCTTTCCTCAAATGTT+TGG | - | chr1.3:3301712-3301731 | None:intergenic | 30.0% | |
| TCTACAAACAACAACAATCA+AGG | - | chr1.3:3301342-3301361 | None:intergenic | 30.0% | |
| TGCATACCACTAAATAGATT+TGG | - | chr1.3:3302128-3302147 | None:intergenic | 30.0% | |
| TTCAACCTTTGATCAGAAAA+AGG | - | chr1.3:3302269-3302288 | None:intergenic | 30.0% | |
| TTTGATAAAACTTAAGGAGG+CGG | + | chr1.3:3301469-3301488 | MS.gene26916:intron | 30.0% | |
| ! | AAGCTCAAAATAGTGGTTTT+AGG | - | chr1.3:3300809-3300828 | None:intergenic | 30.0% |
| ! | ATCTTCCTTTTTCTGATCAA+AGG | + | chr1.3:3302261-3302280 | MS.gene26916:CDS | 30.0% |
| ! | CACATCAATAGATTAGTTAG+TGG | - | chr1.3:3303171-3303190 | None:intergenic | 30.0% |
| ! | GAAGAATCTAGTTTACCTAT+TGG | + | chr1.3:3301581-3301600 | MS.gene26916:CDS | 30.0% |
| ! | GACATGTAGATTTTGTAGTA+AGG | + | chr1.3:3301191-3301210 | MS.gene26916:intron | 30.0% |
| ! | TTCTAAGAAGCTCAAAATAG+TGG | - | chr1.3:3300816-3300835 | None:intergenic | 30.0% |
| ! | TTTTACGAGATTACACGAAT+TGG | + | chr1.3:3300163-3300182 | MS.gene26916:CDS | 30.0% |
| ! | TTTTCTGATCAAAGGTTGAA+TGG | + | chr1.3:3302269-3302288 | MS.gene26916:CDS | 30.0% |
| !! | AAAGTTAGTTGATTTGCTTG+CGG | + | chr1.3:3300407-3300426 | MS.gene26916:intron | 30.0% |
| !! | ATAATGGATTTGTTGGAAAG+TGG | + | chr1.3:3302219-3302238 | MS.gene26916:CDS | 30.0% |
| !! | CAAATAGAGTATTTTGCTTG+AGG | - | chr1.3:3302600-3302619 | None:intergenic | 30.0% |
| !! | GTTTTTAGAAAGGCTTTTGT+CGG | + | chr1.3:3301126-3301145 | MS.gene26916:intron | 30.0% |
| !!! | AAGAAAAAGGGTTTTGGATT+GGG | - | chr1.3:3300343-3300362 | None:intergenic | 30.0% |
| AAACTAGATTCTTCTTCCAC+GGG | - | chr1.3:3301575-3301594 | None:intergenic | 35.0% | |
| AAATCACGGTAATTGAGCAT+TGG | + | chr1.3:3300843-3300862 | MS.gene26916:intron | 35.0% | |
| AACAGACTAGATGAGAAGAT+TGG | - | chr1.3:3303020-3303039 | None:intergenic | 35.0% | |
| AATCACGGTAATTGAGCATT+GGG | + | chr1.3:3300844-3300863 | MS.gene26916:intron | 35.0% | |
| AGTAAGGAGAGTAAATCAGA+TGG | + | chr1.3:3301207-3301226 | MS.gene26916:intron | 35.0% | |
| ATAGGTGAAAGAAACTACGA+CGG | + | chr1.3:3301883-3301902 | MS.gene26916:intron | 35.0% | |
| ATGCATTGAGAAGTGACAAT+GGG | - | chr1.3:3300682-3300701 | None:intergenic | 35.0% | |
| CCATTAAATCTCTTGTCTAC+AGG | - | chr1.3:3302825-3302844 | None:intergenic | 35.0% | |
| CCTGTAGACAAGAGATTTAA+TGG | + | chr1.3:3302822-3302841 | MS.gene26916:CDS | 35.0% | |
| GCATCAAAGATGTAATACCT+TGG | - | chr1.3:3302303-3302322 | None:intergenic | 35.0% | |
| GTTGAATGGTAAAATTCCCA+AGG | + | chr1.3:3302283-3302302 | MS.gene26916:CDS | 35.0% | |
| GTTGTATCTACTTGTGCATT+TGG | + | chr1.3:3301986-3302005 | MS.gene26916:CDS | 35.0% | |
| TAAAAGAGTAAAAACGCAGC+TGG | - | chr1.3:3300148-3300167 | None:intergenic | 35.0% | |
| TACCGAGTTTCTTTCGTTTA+CGG | - | chr1.3:3300069-3300088 | None:intergenic | 35.0% | |
| TACTGGAAACCAAACATTTG+AGG | + | chr1.3:3301700-3301719 | MS.gene26916:CDS | 35.0% | |
| TCATTGTTAACCCATACACT+TGG | + | chr1.3:3300930-3300949 | MS.gene26916:intron | 35.0% | |
| TGAAGTATAGAAAGAGAAGC+GGG | - | chr1.3:3302325-3302344 | None:intergenic | 35.0% | |
| ! | ACTAGAATTGATTCTTGACG+CGG | - | chr1.3:3300480-3300499 | None:intergenic | 35.0% |
| ! | AGTATTTTGCTTGAGGGAAA+AGG | - | chr1.3:3302593-3302612 | None:intergenic | 35.0% |
| ! | CTCCATAAAAGTGAGTTGAA+AGG | - | chr1.3:3300628-3300647 | None:intergenic | 35.0% |
| ! | GGAAAGAGATAGAAGTTTTG+AGG | + | chr1.3:3301721-3301740 | MS.gene26916:CDS | 35.0% |
| ! | GGAATCTTGTGAGAACATTT+TGG | - | chr1.3:3302413-3302432 | None:intergenic | 35.0% |
| ! | TCTAGTTGCTCAAGTTTTTC+AGG | - | chr1.3:3301548-3301567 | None:intergenic | 35.0% |
| !! | AAAATTGGAGCTTTAGACTC+CGG | - | chr1.3:3301030-3301049 | None:intergenic | 35.0% |
| !! | ACAAACAGAGCATTGAATCA+CGG | - | chr1.3:3300752-3300771 | None:intergenic | 35.0% |
| !! | ACACTTGGTTAATTTGCTTG+CGG | + | chr1.3:3300945-3300964 | MS.gene26916:intron | 35.0% |
| !! | CTTGTGAGAACATTTTGGTA+GGG | - | chr1.3:3302408-3302427 | None:intergenic | 35.0% |
| !! | TCTTGTGAGAACATTTTGGT+AGG | - | chr1.3:3302409-3302428 | None:intergenic | 35.0% |
| !! | TGCCTTTCAACTCACTTTTA+TGG | + | chr1.3:3300623-3300642 | MS.gene26916:intron | 35.0% |
| !! | TTTGCAATGGTTTTGCTTTG+CGG | - | chr1.3:3303338-3303357 | None:intergenic | 35.0% |
| !!! | AGAAAAAGGGTTTTGGATTG+GGG | - | chr1.3:3300342-3300361 | None:intergenic | 35.0% |
| !!! | CAAGAAAAAGGGTTTTGGAT+TGG | - | chr1.3:3300344-3300363 | None:intergenic | 35.0% |
| !!! | GATAGAAGTTTTGAGGTGAT+TGG | + | chr1.3:3301728-3301747 | MS.gene26916:intron | 35.0% |
| AAGGAGAGTAAATCAGATGG+AGG | + | chr1.3:3301210-3301229 | MS.gene26916:intron | 40.0% | |
| AAGGATCTGGTCAATAGCAT+GGG | + | chr1.3:3303306-3303325 | MS.gene26916:CDS | 40.0% | |
| ACTGATGCGTCTTTAATAGG+AGG | + | chr1.3:3301626-3301645 | MS.gene26916:CDS | 40.0% | |
| AGATGCGTGTATGTTTGGAT+TGG | + | chr1.3:3300646-3300665 | MS.gene26916:intron | 40.0% | |
| AGGAGAGTAAATCAGATGGA+GGG | + | chr1.3:3301211-3301230 | MS.gene26916:intron | 40.0% | |
| AGTTAAATCACTAGAGGCAG+AGG | + | chr1.3:3301235-3301254 | MS.gene26916:intron | 40.0% | |
| ATGTTGGAAGAAGAACTACC+TGG | - | chr1.3:3300196-3300215 | None:intergenic | 40.0% | |
| CATGCATTGAGAAGTGACAA+TGG | - | chr1.3:3300683-3300702 | None:intergenic | 40.0% | |
| CTAATCTATTGATGTGCGTC+TGG | + | chr1.3:3303175-3303194 | MS.gene26916:CDS | 40.0% | |
| CTCCTTACCACAAAACATAC+AGG | - | chr1.3:3301167-3301186 | None:intergenic | 40.0% | |
| CTGATGCGTCTTTAATAGGA+GGG | + | chr1.3:3301627-3301646 | MS.gene26916:CDS | 40.0% | |
| GACATGTTTGAATGCTTTCG+TGG | - | chr1.3:3301094-3301113 | None:intergenic | 40.0% | |
| GAGGGTAGTTAAATCACTAG+AGG | + | chr1.3:3301229-3301248 | MS.gene26916:intron | 40.0% | |
| GATGATCTCTATCAACCGAT+TGG | + | chr1.3:3302016-3302035 | MS.gene26916:CDS | 40.0% | |
| GTACTTGCCATATCAGAACA+TGG | + | chr1.3:3302693-3302712 | MS.gene26916:CDS | 40.0% | |
| GTATCTACTTGTGCATTTGG+TGG | + | chr1.3:3301989-3302008 | MS.gene26916:CDS | 40.0% | |
| GTTGTCTTCATTAACCCCAT+GGG | + | chr1.3:3302477-3302496 | MS.gene26916:intron | 40.0% | |
| TAGACTCCAAGTCCCAATTT+AGG | + | chr1.3:3302622-3302641 | MS.gene26916:CDS | 40.0% | |
| TAGTGTCTATGATGAGGCTA+AGG | + | chr1.3:3302725-3302744 | MS.gene26916:CDS | 40.0% | |
| TATGGAGATGCGTGTATGTT+TGG | + | chr1.3:3300641-3300660 | MS.gene26916:intron | 40.0% | |
| TCGTAGTAGTGTCTATGATG+AGG | + | chr1.3:3302719-3302738 | MS.gene26916:CDS | 40.0% | |
| TGTCGTTGTTGAAGCAATGT+TGG | - | chr1.3:3300212-3300231 | None:intergenic | 40.0% | |
| TGTTGTCTTCATTAACCCCA+TGG | + | chr1.3:3302476-3302495 | MS.gene26916:intron | 40.0% | |
| TTGTCTTCATTAACCCCATG+GGG | + | chr1.3:3302478-3302497 | MS.gene26916:intron | 40.0% | |
| TTTCATGCAAGGTTGCAAAG+TGG | + | chr1.3:3301964-3301983 | MS.gene26916:CDS | 40.0% | |
| ! | ACACGAATTGGTTTAAGACC+AGG | + | chr1.3:3300175-3300194 | MS.gene26916:CDS | 40.0% |
| ! | ACTAAAAGCGCAGGAATTAG+TGG | + | chr1.3:3302181-3302200 | MS.gene26916:CDS | 40.0% |
| ! | CTAAAAGCGCAGGAATTAGT+GGG | + | chr1.3:3302182-3302201 | MS.gene26916:CDS | 40.0% |
| ! | GACCTGTATGTTTTGTGGTA+AGG | + | chr1.3:3301162-3301181 | MS.gene26916:intron | 40.0% |
| ! | GAGAAGACCTGTATGTTTTG+TGG | + | chr1.3:3301157-3301176 | MS.gene26916:intron | 40.0% |
| ! | TGAAATCACACTAAAAGCGC+AGG | + | chr1.3:3302172-3302191 | MS.gene26916:CDS | 40.0% |
| ! | TGTCACTTCTCAATGCATGT+GGG | + | chr1.3:3300684-3300703 | MS.gene26916:intron | 40.0% |
| ! | TTCACTTCTAGGAATGAGTG+AGG | + | chr1.3:3301433-3301452 | MS.gene26916:intron | 40.0% |
| ! | TTGTCACTTCTCAATGCATG+TGG | + | chr1.3:3300683-3300702 | MS.gene26916:intron | 40.0% |
| !! | AGGTTTGCTATGTAGCATTC+TGG | + | chr1.3:3302147-3302166 | MS.gene26916:intron | 40.0% |
| !! | CAATGCTCTGTTTGTTTCTG+CGG | + | chr1.3:3300757-3300776 | MS.gene26916:intron | 40.0% |
| !! | CACTTGGTTAATTTGCTTGC+GGG | + | chr1.3:3300946-3300965 | MS.gene26916:intron | 40.0% |
| !! | GGTTTGCTATGTAGCATTCT+GGG | + | chr1.3:3302148-3302167 | MS.gene26916:intron | 40.0% |
| !! | GTTGGGGATAATGGATTTGT+TGG | + | chr1.3:3302212-3302231 | MS.gene26916:CDS | 40.0% |
| !!! | AGTTGCTCAAGTTTTTCAGG+TGG | - | chr1.3:3301545-3301564 | None:intergenic | 40.0% |
| !!! | CGCTTTGTTTTTCCTGACAA+CGG | - | chr1.3:3302751-3302770 | None:intergenic | 40.0% |
| !!! | GAAAAAGGGTTTTGGATTGG+GGG | - | chr1.3:3300341-3300360 | None:intergenic | 40.0% |
| !!! | TTCCTTTTTCAACCACGTGT+GGG | + | chr1.3:3302537-3302556 | MS.gene26916:intron | 40.0% |
| !!! | TTTCCTTTTTCAACCACGTG+TGG | + | chr1.3:3302536-3302555 | MS.gene26916:intron | 40.0% |
| AAACTACGACGGCACATTGT+GGG | + | chr1.3:3301894-3301913 | MS.gene26916:CDS | 45.0% | |
| AAGTGACAATGGGTGATCCA+TGG | - | chr1.3:3300672-3300691 | None:intergenic | 45.0% | |
| ACAACCAAGCGTATCCAGTA+GGG | - | chr1.3:3301815-3301834 | None:intergenic | 45.0% | |
| ACCAAACCAAACAGCCACTT+CGG | + | chr1.3:3300889-3300908 | MS.gene26916:intron | 45.0% | |
| ACGAGCTCCATGTTCTGATA+TGG | - | chr1.3:3302703-3302722 | None:intergenic | 45.0% | |
| ACTCCAAGTCCCAATTTAGG+AGG | + | chr1.3:3302625-3302644 | MS.gene26916:CDS | 45.0% | |
| AGTTGCACTTCAACTTCCTC+TGG | - | chr1.3:3302777-3302796 | None:intergenic | 45.0% | |
| ATGCTTCCTGACGATAACAG+AGG | - | chr1.3:3303145-3303164 | None:intergenic | 45.0% | |
| ATTGTCTCAATTGCGTGCAG+AGG | + | chr1.3:3301658-3301677 | MS.gene26916:CDS | 45.0% | |
| CAAGGATCTGGTCAATAGCA+TGG | + | chr1.3:3303305-3303324 | MS.gene26916:CDS | 45.0% | |
| CCAGCAACAACATGAGTAGT+AGG | - | chr1.3:3300301-3300320 | None:intergenic | 45.0% | |
| CCTACTACTCATGTTGTTGC+TGG | + | chr1.3:3300298-3300317 | MS.gene26916:CDS | 45.0% | |
| CGCCGTAAACGAAAGAAACT+CGG | + | chr1.3:3300064-3300083 | MS.gene26916:CDS | 45.0% | |
| CTCCAAGTCCCAATTTAGGA+GGG | + | chr1.3:3302626-3302645 | MS.gene26916:CDS | 45.0% | |
| GAAAAACAAAGCGAAGCCAG+AGG | + | chr1.3:3302758-3302777 | MS.gene26916:CDS | 45.0% | |
| GAAGCCTCTGACATTCCAAT+CGG | - | chr1.3:3302034-3302053 | None:intergenic | 45.0% | |
| GCGACTGATGCGTCTTTAAT+AGG | + | chr1.3:3301623-3301642 | MS.gene26916:CDS | 45.0% | |
| GTCAGAGGCTTCACTTAAGA+AGG | + | chr1.3:3302042-3302061 | MS.gene26916:CDS | 45.0% | |
| TACAACCAAGCGTATCCAGT+AGG | - | chr1.3:3301816-3301835 | None:intergenic | 45.0% | |
| TCAACCGATTGGAATGTCAG+AGG | + | chr1.3:3302027-3302046 | MS.gene26916:CDS | 45.0% | |
| TCAACCGCCACAGAACATAT+GGG | - | chr1.3:3303245-3303264 | None:intergenic | 45.0% | |
| TCAGCTTCCCATATGTTCTG+TGG | + | chr1.3:3303235-3303254 | MS.gene26916:CDS | 45.0% | |
| TGTCTTCATTAACCCCATGG+GGG | + | chr1.3:3302479-3302498 | MS.gene26916:intron | 45.0% | |
| TGTGTGTGTGTGTGTGTGTT+TGG | + | chr1.3:3300449-3300468 | MS.gene26916:intron | 45.0% | |
| TTCAACCGCCACAGAACATA+TGG | - | chr1.3:3303246-3303265 | None:intergenic | 45.0% | |
| ! | AATTAGTGGGTCGCAGAGTT+GGG | + | chr1.3:3302195-3302214 | MS.gene26916:CDS | 45.0% |
| ! | GATGTGCGTCTGGTTTAATG+AGG | + | chr1.3:3303185-3303204 | MS.gene26916:CDS | 45.0% |
| ! | TAGTGGGTCCCTCCTAAATT+GGG | - | chr1.3:3302637-3302656 | None:intergenic | 45.0% |
| ! | TCTACTTGTGCATTTGGTGG+CGG | + | chr1.3:3301992-3302011 | MS.gene26916:CDS | 45.0% |
| !! | GTGTATGTTTGGATTGGCCA+TGG | + | chr1.3:3300652-3300671 | MS.gene26916:intron | 45.0% |
| !! | TAAGAGGAAAGTACCCCCAT+GGG | - | chr1.3:3302495-3302514 | None:intergenic | 45.0% |
| !! | TAGTTCATCGGTTTCGTCGT+CGG | - | chr1.3:3300023-3300042 | None:intergenic | 45.0% |
| !!! | TGCTACTTGTTTTGCCCTAC+TGG | + | chr1.3:3301798-3301817 | MS.gene26916:intron | 45.0% |
| AAGATATCCAAGCCCACACG+TGG | - | chr1.3:3302552-3302571 | None:intergenic | 50.0% | |
| AGCCCACACGTGGTTGAAAA+AGG | - | chr1.3:3302542-3302561 | None:intergenic | 50.0% | |
| CAATTTAGGAGGGACCCACT+AGG | + | chr1.3:3302636-3302655 | MS.gene26916:CDS | 50.0% | |
| CCAAACCAAACAGCCACTTC+GGG | + | chr1.3:3300890-3300909 | MS.gene26916:intron | 50.0% | |
| GAAACTACGACGGCACATTG+TGG | + | chr1.3:3301893-3301912 | MS.gene26916:CDS | 50.0% | |
| GACAGAATTGCATCCCGAAG+TGG | - | chr1.3:3300906-3300925 | None:intergenic | 50.0% | |
| GACGACGAAACCGATGAACT+AGG | + | chr1.3:3300022-3300041 | MS.gene26916:CDS | 50.0% | |
| GCGCATTCGACCTAGTTCAT+CGG | - | chr1.3:3300035-3300054 | None:intergenic | 50.0% | |
| GCTTCCCATATGTTCTGTGG+CGG | + | chr1.3:3303238-3303257 | MS.gene26916:CDS | 50.0% | |
| GGTTCTACAGTGCGAATGGT+GGG | + | chr1.3:3301915-3301934 | MS.gene26916:CDS | 50.0% | |
| GTACAGAACTTGTGCGCCAA+AGG | - | chr1.3:3302677-3302696 | None:intergenic | 50.0% | |
| GTCCCTCCTAAATTGGGACT+TGG | - | chr1.3:3302631-3302650 | None:intergenic | 50.0% | |
| GTGAAGCCTCTGTTATCGTC+AGG | + | chr1.3:3303136-3303155 | MS.gene26916:CDS | 50.0% | |
| TCGTCGTCGGAGATTGAGAT+CGG | - | chr1.3:3300010-3300029 | None:intergenic | 50.0% | |
| TGAGCAACTAGAGATTCCCG+TGG | + | chr1.3:3301556-3301575 | MS.gene26916:CDS | 50.0% | |
| TGTGGGTTCTACAGTGCGAA+TGG | + | chr1.3:3301911-3301930 | MS.gene26916:CDS | 50.0% | |
| TTGCTTGAGGGAAAAGGCGA+TGG | - | chr1.3:3302587-3302606 | None:intergenic | 50.0% | |
| TTTGCCCTACTGGATACGCT+TGG | + | chr1.3:3301808-3301827 | MS.gene26916:intron | 50.0% | |
| ! | ATTAGTGGGTCGCAGAGTTG+GGG | + | chr1.3:3302196-3302215 | MS.gene26916:CDS | 50.0% |
| ! | CTAGTGGGTCCCTCCTAAAT+TGG | - | chr1.3:3302638-3302657 | None:intergenic | 50.0% |
| ! | GAATTAGTGGGTCGCAGAGT+TGG | + | chr1.3:3302194-3302213 | MS.gene26916:CDS | 50.0% |
| ! | GTGCGTCTGGTTTAATGAGG+TGG | + | chr1.3:3303188-3303207 | MS.gene26916:CDS | 50.0% |
| ! | GTGGCGTGTTATTGTCGTTC+AGG | + | chr1.3:3302238-3302257 | MS.gene26916:CDS | 50.0% |
| ! | TTTTCAACCACGTGTGGGCT+TGG | + | chr1.3:3302542-3302561 | MS.gene26916:intron | 50.0% |
| !! | AAGAGGAAAGTACCCCCATG+GGG | - | chr1.3:3302494-3302513 | None:intergenic | 50.0% |
| !! | ACAGTGCGAATGGTGGGTTT+AGG | + | chr1.3:3301921-3301940 | MS.gene26916:CDS | 50.0% |
| !! | AGATCGGTAGAGTGTTGCTG+TGG | - | chr1.3:3299994-3300013 | None:intergenic | 50.0% |
| !! | CTAAGAGGAAAGTACCCCCA+TGG | - | chr1.3:3302496-3302515 | None:intergenic | 50.0% |
| !! | GAAGTGGCTGTTTGGTTTGG+TGG | - | chr1.3:3300890-3300909 | None:intergenic | 50.0% |
| !! | TGGCTGTTTGGTTTGGTGGT+GGG | - | chr1.3:3300886-3300905 | None:intergenic | 50.0% |
| AGATCCTTGCGAGTGCAGAC+AGG | - | chr1.3:3303294-3303313 | None:intergenic | 55.0% | |
| AGCGCTTCCAACACACCTAG+TGG | - | chr1.3:3302654-3302673 | None:intergenic | 55.0% | |
| AGGTGGTTCGCTTCACGTCT+AGG | + | chr1.3:3303205-3303224 | MS.gene26916:CDS | 55.0% | |
| ATGAGGCTAAGGCCGTTGTC+AGG | + | chr1.3:3302736-3302755 | MS.gene26916:CDS | 55.0% | |
| CCCGAAGTGGCTGTTTGGTT+TGG | - | chr1.3:3300893-3300912 | None:intergenic | 55.0% | |
| GATCCTTGCGAGTGCAGACA+GGG | - | chr1.3:3303293-3303312 | None:intergenic | 55.0% | |
| GCAGAATGTGCGTCTGTGCT+TGG | - | chr1.3:3300787-3300806 | None:intergenic | 55.0% | |
| GCGCTTCCAACACACCTAGT+GGG | - | chr1.3:3302653-3302672 | None:intergenic | 55.0% | |
| GGGTTCTACAGTGCGAATGG+TGG | + | chr1.3:3301914-3301933 | MS.gene26916:CDS | 55.0% | |
| GGTCGCAGAGTTGGGGATAA+TGG | + | chr1.3:3302203-3302222 | MS.gene26916:CDS | 55.0% | |
| GGTGGTTCGCTTCACGTCTA+GGG | + | chr1.3:3303206-3303225 | MS.gene26916:CDS | 55.0% | |
| TGCATCCCGAAGTGGCTGTT+TGG | - | chr1.3:3300898-3300917 | None:intergenic | 55.0% | |
| TGTCTGCACTCGCAAGGATC+TGG | + | chr1.3:3303293-3303312 | MS.gene26916:CDS | 55.0% | |
| !! | GTGGCTGTTTGGTTTGGTGG+TGG | - | chr1.3:3300887-3300906 | None:intergenic | 55.0% |
| !! | GTGTGTTGGAAGCGCTCCTT+TGG | + | chr1.3:3302658-3302677 | MS.gene26916:CDS | 55.0% |
| GAGGGACCCACTAGGTGTGT+TGG | + | chr1.3:3302644-3302663 | MS.gene26916:CDS | 60.0% | |
| GTTCCCTGTCTGCACTCGCA+AGG | + | chr1.3:3303287-3303306 | MS.gene26916:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3299986 | 3303362 | 3299986 | ID=MS.gene26916 |
| chr1.3 | mRNA | 3299986 | 3303362 | 3299986 | ID=MS.gene26916.t1;Parent=MS.gene26916 |
| chr1.3 | exon | 3299986 | 3300331 | 3299986 | ID=MS.gene26916.t1.exon1;Parent=MS.gene26916.t1 |
| chr1.3 | CDS | 3299986 | 3300331 | 3299986 | ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1 |
| chr1.3 | exon | 3301525 | 3301742 | 3301525 | ID=MS.gene26916.t1.exon2;Parent=MS.gene26916.t1 |
| chr1.3 | CDS | 3301525 | 3301742 | 3301525 | ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1 |
| chr1.3 | exon | 3301887 | 3302063 | 3301887 | ID=MS.gene26916.t1.exon3;Parent=MS.gene26916.t1 |
| chr1.3 | CDS | 3301887 | 3302063 | 3301887 | ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1 |
| chr1.3 | exon | 3302149 | 3302304 | 3302149 | ID=MS.gene26916.t1.exon4;Parent=MS.gene26916.t1 |
| chr1.3 | CDS | 3302149 | 3302304 | 3302149 | ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1 |
| chr1.3 | exon | 3302576 | 3302852 | 3302576 | ID=MS.gene26916.t1.exon5;Parent=MS.gene26916.t1 |
| chr1.3 | CDS | 3302576 | 3302852 | 3302576 | ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1 |
| chr1.3 | exon | 3303130 | 3303362 | 3303130 | ID=MS.gene26916.t1.exon6;Parent=MS.gene26916.t1 |
| chr1.3 | CDS | 3303130 | 3303362 | 3303130 | ID=cds.MS.gene26916.t1;Parent=MS.gene26916.t1 |
| Gene Sequence |
| Protein sequence |
