Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31610.t1 | XP_003588551.1 | 97.1 | 385 | 11 | 0 | 1 | 385 | 1 | 385 | 1.60E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31610.t1 | Q08298 | 60.5 | 392 | 146 | 6 | 1 | 384 | 1 | 391 | 7.1e-84 | 312.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31610.t1 | G7I4D4 | 97.1 | 385 | 11 | 0 | 1 | 385 | 1 | 385 | 1.1e-167 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene31610 | 0.840403 | 8.88E-58 | -1.69E-46 |
| MS.gene049217 | MS.gene31610 | 0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene049222 | MS.gene31610 | 0.810613 | 1.06E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene31610 | 0.812708 | 3.70E-51 | -1.69E-46 |
| MS.gene049268 | MS.gene31610 | 0.817606 | 3.02E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene31610 | 0.84155 | 4.44E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene31610 | 0.824832 | 6.52E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene31610 | 0.859182 | 4.94E-63 | -1.69E-46 |
| MS.gene049865 | MS.gene31610 | 0.805635 | 1.21E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene31610 | 0.835534 | 1.59E-56 | -1.69E-46 |
| MS.gene050165 | MS.gene31610 | 0.802309 | 5.96E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene31610 | 0.841668 | 4.13E-58 | -1.69E-46 |
| MS.gene050216 | MS.gene31610 | 0.807854 | 4.12E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene31610 | 0.85332 | 2.58E-61 | -1.69E-46 |
| MS.gene050381 | MS.gene31610 | -0.806973 | 6.34E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene31610 | 0.818069 | 2.38E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene31610 | 0.872661 | 2.68E-67 | -1.69E-46 |
| MS.gene050504 | MS.gene31610 | 0.852775 | 3.70E-61 | -1.69E-46 |
| MS.gene050518 | MS.gene31610 | 0.815854 | 7.47E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene31610 | 0.825288 | 5.09E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene31610 | 0.876116 | 1.80E-68 | -1.69E-46 |
| MS.gene050675 | MS.gene31610 | 0.850414 | 1.72E-60 | -1.69E-46 |
| MS.gene050699 | MS.gene31610 | 0.827297 | 1.69E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene31610 | 0.806272 | 8.91E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene31610 | 0.837922 | 3.91E-57 | -1.69E-46 |
| MS.gene05081 | MS.gene31610 | 0.813602 | 2.36E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene31610 | 0.887202 | 1.76E-72 | -1.69E-46 |
| MS.gene050871 | MS.gene31610 | 0.886688 | 2.75E-72 | -1.69E-46 |
| MS.gene050904 | MS.gene31610 | 0.821298 | 4.35E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene31610 | 0.869399 | 3.19E-66 | -1.69E-46 |
| MS.gene051138 | MS.gene31610 | -0.823427 | 1.39E-53 | -1.69E-46 |
| MS.gene051268 | MS.gene31610 | 0.85499 | 8.52E-62 | -1.69E-46 |
| MS.gene051317 | MS.gene31610 | 0.824303 | 8.68E-54 | -1.69E-46 |
| MS.gene051509 | MS.gene31610 | 0.800418 | 1.45E-48 | -1.69E-46 |
| MS.gene051734 | MS.gene31610 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene31610 | 0.825627 | 4.23E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene31610 | 0.822268 | 2.59E-53 | -1.69E-46 |
| MS.gene051874 | MS.gene31610 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene051941 | MS.gene31610 | 0.83063 | 2.64E-55 | -1.69E-46 |
| MS.gene051949 | MS.gene31610 | 0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene31610 | 0.834505 | 2.88E-56 | -1.69E-46 |
| MS.gene052482 | MS.gene31610 | 0.801742 | 7.80E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene31610 | 0.805684 | 1.19E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene31610 | 0.80716 | 5.79E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene31610 | 0.809792 | 1.59E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene31610 | 0.851561 | 8.19E-61 | -1.69E-46 |
| MS.gene052872 | MS.gene31610 | 0.861416 | 1.04E-63 | -1.69E-46 |
| MS.gene052966 | MS.gene31610 | 0.866168 | 3.47E-65 | -1.69E-46 |
| MS.gene053203 | MS.gene31610 | 0.849493 | 3.12E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene31610 | 0.816712 | 4.80E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene31610 | 0.81675 | 4.71E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene31610 | -0.810295 | 1.24E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene31610 | 0.85236 | 4.86E-61 | -1.69E-46 |
| MS.gene053916 | MS.gene31610 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene054344 | MS.gene31610 | 0.806088 | 9.75E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene31610 | 0.82804 | 1.12E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene31610 | 0.833981 | 3.90E-56 | -1.69E-46 |
| MS.gene054642 | MS.gene31610 | 0.811852 | 5.69E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene31610 | 0.81921 | 1.31E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene31610 | 0.836204 | 1.07E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene31610 | 0.857463 | 1.60E-62 | -1.69E-46 |
| MS.gene055206 | MS.gene31610 | 0.82 | 8.64E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene31610 | 0.833811 | 4.30E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene31610 | 0.824768 | 6.75E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene31610 | 0.851107 | 1.10E-60 | -1.69E-46 |
| MS.gene055722 | MS.gene31610 | 0.824019 | 1.01E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene31610 | 0.852684 | 3.93E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene31610 | 0.840925 | 6.48E-58 | -1.69E-46 |
| MS.gene055751 | MS.gene31610 | 0.865216 | 6.94E-65 | -1.69E-46 |
| MS.gene055776 | MS.gene31610 | 0.865924 | 4.15E-65 | -1.69E-46 |
| MS.gene05589 | MS.gene31610 | 0.863103 | 3.16E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene31610 | 0.815874 | 7.39E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene31610 | 0.81586 | 7.44E-52 | -1.69E-46 |
| MS.gene056449 | MS.gene31610 | 0.801552 | 8.53E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene31610 | 0.870993 | 9.58E-67 | -1.69E-46 |
| MS.gene056510 | MS.gene31610 | 0.872353 | 3.40E-67 | -1.69E-46 |
| MS.gene056657 | MS.gene31610 | 0.825872 | 3.70E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene31610 | 0.808912 | 2.45E-50 | -1.69E-46 |
| MS.gene057857 | MS.gene31610 | 0.816042 | 6.78E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene31610 | 0.821067 | 4.92E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene31610 | 0.825 | 5.95E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene31610 | 0.814097 | 1.83E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene31610 | 0.808876 | 2.50E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene31610 | 0.840164 | 1.03E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene31610 | 0.801596 | 8.36E-49 | -1.69E-46 |
| MS.gene058978 | MS.gene31610 | -0.832942 | 7.09E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene31610 | 0.856405 | 3.29E-62 | -1.69E-46 |
| MS.gene059023 | MS.gene31610 | 0.860847 | 1.55E-63 | -1.69E-46 |
| MS.gene059129 | MS.gene31610 | 0.885942 | 5.26E-72 | -1.69E-46 |
| MS.gene05913 | MS.gene31610 | 0.805558 | 1.26E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene31610 | 0.801595 | 8.36E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene31610 | 0.823603 | 1.27E-53 | -1.69E-46 |
| MS.gene059680 | MS.gene31610 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene059699 | MS.gene31610 | -0.812575 | 3.96E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene31610 | -0.817906 | 2.59E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene31610 | 0.826416 | 2.75E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene31610 | 0.862155 | 6.19E-64 | -1.69E-46 |
| MS.gene06000 | MS.gene31610 | 0.860897 | 1.50E-63 | -1.69E-46 |
| MS.gene060703 | MS.gene31610 | 0.817358 | 3.44E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene31610 | 0.849078 | 4.07E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene31610 | 0.850772 | 1.37E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene31610 | 0.827777 | 1.30E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene31610 | 0.861379 | 1.07E-63 | -1.69E-46 |
| MS.gene061150 | MS.gene31610 | 0.809783 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31610.t1 | MTR_1g008500 | 96.883 | 385 | 12 | 0 | 1 | 385 | 1 | 385 | 0.0 | 763 |
| MS.gene31610.t1 | MTR_0312s0030 | 61.440 | 389 | 82 | 7 | 1 | 385 | 1 | 325 | 3.65e-158 | 447 |
| MS.gene31610.t1 | MTR_1g007520 | 61.440 | 389 | 82 | 7 | 1 | 385 | 1 | 325 | 3.65e-158 | 447 |
| MS.gene31610.t1 | MTR_1g008510 | 60.256 | 390 | 86 | 6 | 1 | 385 | 1 | 326 | 4.18e-152 | 432 |
| MS.gene31610.t1 | MTR_1g008590 | 61.440 | 389 | 82 | 7 | 1 | 385 | 1 | 325 | 3.67e-151 | 430 |
| MS.gene31610.t1 | MTR_1g008560 | 57.215 | 395 | 94 | 6 | 1 | 385 | 1 | 330 | 3.24e-146 | 417 |
| MS.gene31610.t1 | MTR_1g008450 | 57.254 | 386 | 91 | 9 | 1 | 385 | 1 | 313 | 9.84e-139 | 398 |
| MS.gene31610.t1 | MTR_3g109490 | 51.554 | 386 | 118 | 5 | 1 | 383 | 1 | 320 | 1.86e-133 | 385 |
| MS.gene31610.t1 | MTR_1g008530 | 78.082 | 219 | 47 | 1 | 168 | 385 | 6 | 224 | 1.55e-125 | 361 |
| MS.gene31610.t1 | MTR_1g008470 | 66.791 | 268 | 71 | 4 | 118 | 385 | 51 | 300 | 3.06e-122 | 355 |
| MS.gene31610.t1 | MTR_1g008470 | 75.000 | 64 | 13 | 1 | 1 | 64 | 1 | 61 | 1.15e-22 | 97.4 |
| MS.gene31610.t1 | MTR_1g008460 | 63.878 | 263 | 77 | 5 | 126 | 385 | 50 | 297 | 5.02e-113 | 332 |
| MS.gene31610.t1 | MTR_1g008460 | 76.190 | 63 | 12 | 1 | 1 | 63 | 1 | 60 | 5.16e-23 | 98.2 |
| MS.gene31610.t1 | MTR_1g008580 | 81.287 | 171 | 32 | 0 | 214 | 384 | 1 | 171 | 4.45e-101 | 297 |
| MS.gene31610.t1 | MTR_4g069680 | 43.304 | 224 | 122 | 4 | 166 | 385 | 65 | 287 | 3.87e-60 | 196 |
| MS.gene31610.t1 | MTR_3g116410 | 43.750 | 224 | 121 | 4 | 166 | 385 | 54 | 276 | 1.97e-58 | 192 |
| MS.gene31610.t1 | MTR_3g107830 | 43.304 | 224 | 122 | 3 | 166 | 385 | 34 | 256 | 3.04e-58 | 191 |
| MS.gene31610.t1 | MTR_3g116380 | 42.342 | 222 | 122 | 4 | 166 | 383 | 82 | 301 | 2.56e-56 | 187 |
| MS.gene31610.t1 | MTR_1g008420 | 48.246 | 228 | 72 | 10 | 14 | 237 | 14 | 199 | 7.07e-47 | 159 |
| MS.gene31610.t1 | MTR_3g116320 | 40.826 | 218 | 119 | 5 | 171 | 383 | 474 | 686 | 2.29e-45 | 166 |
| MS.gene31610.t1 | MTR_3g116270 | 38.710 | 217 | 125 | 5 | 171 | 383 | 292 | 504 | 9.96e-45 | 161 |
| MS.gene31610.t1 | MTR_4g069570 | 36.530 | 219 | 129 | 6 | 171 | 383 | 120 | 334 | 2.31e-43 | 154 |
| MS.gene31610.t1 | MTR_4g069040 | 35.443 | 237 | 142 | 7 | 153 | 383 | 277 | 508 | 2.66e-42 | 155 |
| MS.gene31610.t1 | MTR_4g069550 | 36.530 | 219 | 129 | 6 | 171 | 383 | 247 | 461 | 2.05e-40 | 149 |
| MS.gene31610.t1 | MTR_8g064500 | 36.530 | 219 | 129 | 5 | 171 | 384 | 159 | 372 | 2.24e-39 | 144 |
| MS.gene31610.t1 | MTR_4g069520 | 36.073 | 219 | 130 | 6 | 171 | 383 | 507 | 721 | 1.84e-38 | 147 |
| MS.gene31610.t1 | MTR_4g069520 | 36.073 | 219 | 130 | 6 | 171 | 383 | 493 | 707 | 2.70e-38 | 146 |
| MS.gene31610.t1 | MTR_8g064560 | 35.160 | 219 | 132 | 5 | 171 | 384 | 412 | 625 | 1.49e-35 | 137 |
| MS.gene31610.t1 | MTR_8g064530 | 34.703 | 219 | 133 | 6 | 171 | 384 | 429 | 642 | 9.78e-34 | 132 |
| MS.gene31610.t1 | MTR_5g034320 | 33.180 | 217 | 137 | 5 | 171 | 383 | 415 | 627 | 1.46e-33 | 132 |
| MS.gene31610.t1 | MTR_3g078090 | 36.649 | 191 | 114 | 4 | 198 | 384 | 439 | 626 | 1.13e-32 | 129 |
| MS.gene31610.t1 | MTR_8g445170 | 40.000 | 150 | 83 | 3 | 234 | 383 | 240 | 382 | 1.14e-31 | 124 |
| MS.gene31610.t1 | MTR_6g086530 | 33.333 | 195 | 122 | 6 | 198 | 385 | 13 | 206 | 2.69e-31 | 118 |
| MS.gene31610.t1 | MTR_8g046000 | 35.909 | 220 | 107 | 8 | 170 | 383 | 30 | 221 | 2.74e-31 | 119 |
| MS.gene31610.t1 | MTR_8g445140 | 39.241 | 158 | 86 | 4 | 226 | 383 | 154 | 301 | 3.48e-31 | 120 |
| MS.gene31610.t1 | MTR_2g081610 | 33.803 | 213 | 114 | 6 | 171 | 383 | 73 | 258 | 5.17e-30 | 117 |
| MS.gene31610.t1 | MTR_8g045890 | 44.526 | 137 | 69 | 4 | 247 | 383 | 301 | 430 | 7.34e-30 | 119 |
| MS.gene31610.t1 | MTR_8g045890 | 44.526 | 137 | 69 | 4 | 247 | 383 | 342 | 471 | 1.37e-29 | 119 |
| MS.gene31610.t1 | MTR_8g045890 | 43.056 | 144 | 75 | 4 | 240 | 383 | 372 | 508 | 1.59e-29 | 119 |
| MS.gene31610.t1 | MTR_8g045880 | 41.781 | 146 | 78 | 3 | 238 | 383 | 175 | 313 | 3.93e-29 | 115 |
| MS.gene31610.t1 | MTR_4g133840 | 33.511 | 188 | 106 | 4 | 198 | 382 | 15 | 186 | 4.07e-29 | 112 |
| MS.gene31610.t1 | MTR_8g045880 | 41.781 | 146 | 78 | 3 | 238 | 383 | 210 | 348 | 6.13e-29 | 115 |
| MS.gene31610.t1 | MTR_8g045880 | 41.781 | 146 | 78 | 3 | 238 | 383 | 212 | 350 | 8.29e-29 | 115 |
| MS.gene31610.t1 | MTR_2g081590 | 32.444 | 225 | 123 | 7 | 160 | 383 | 62 | 258 | 3.05e-28 | 112 |
| MS.gene31610.t1 | MTR_2g081770 | 32.093 | 215 | 120 | 6 | 171 | 383 | 79 | 269 | 6.23e-28 | 111 |
| MS.gene31610.t1 | MTR_5g033340 | 30.455 | 220 | 145 | 5 | 169 | 384 | 164 | 379 | 1.81e-26 | 109 |
| MS.gene31610.t1 | MTR_5g033340 | 32.258 | 155 | 98 | 4 | 216 | 366 | 2 | 153 | 2.20e-15 | 77.4 |
| MS.gene31610.t1 | MTR_1g045860 | 34.101 | 217 | 112 | 10 | 171 | 383 | 69 | 258 | 3.45e-25 | 103 |
| MS.gene31610.t1 | MTR_5g033350 | 31.250 | 192 | 125 | 4 | 197 | 384 | 12 | 200 | 6.72e-25 | 101 |
| MS.gene31610.t1 | MTR_5g033330 | 30.275 | 218 | 144 | 5 | 169 | 382 | 403 | 616 | 6.05e-24 | 103 |
| MS.gene31610.t1 | MTR_5g033330 | 30.198 | 202 | 133 | 5 | 169 | 366 | 195 | 392 | 1.13e-19 | 91.3 |
| MS.gene31610.t1 | MTR_5g033330 | 31.034 | 174 | 113 | 4 | 197 | 366 | 14 | 184 | 8.50e-17 | 82.4 |
| MS.gene31610.t1 | MTR_8g044290 | 44.545 | 110 | 55 | 3 | 240 | 349 | 229 | 332 | 2.17e-22 | 98.6 |
| MS.gene31610.t1 | MTR_5g033360 | 28.311 | 219 | 133 | 6 | 169 | 384 | 25 | 222 | 1.98e-20 | 89.4 |
| MS.gene31610.t1 | MTR_4g068420 | 35.294 | 136 | 68 | 5 | 251 | 383 | 1 | 119 | 4.36e-19 | 82.8 |
| MS.gene31610.t1 | MTR_8g075930 | 40.506 | 79 | 43 | 2 | 298 | 373 | 10 | 87 | 2.14e-17 | 77.0 |
| MS.gene31610.t1 | MTR_5g033430 | 34.831 | 89 | 52 | 3 | 300 | 384 | 24 | 110 | 1.18e-13 | 67.4 |
| MS.gene31610.t1 | MTR_5g033440 | 32.184 | 87 | 57 | 2 | 300 | 384 | 24 | 110 | 2.53e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31610.t1 | AT5G25610 | 49.758 | 414 | 155 | 9 | 1 | 384 | 1 | 391 | 8.69e-119 | 350 |
| MS.gene31610.t1 | AT1G49320 | 37.229 | 231 | 135 | 5 | 164 | 385 | 51 | 280 | 2.46e-47 | 163 |
| MS.gene31610.t1 | AT1G60390 | 34.862 | 218 | 130 | 6 | 171 | 382 | 409 | 620 | 6.99e-34 | 133 |
| MS.gene31610.t1 | AT1G70370 | 34.101 | 217 | 135 | 4 | 171 | 383 | 411 | 623 | 2.23e-33 | 131 |
| MS.gene31610.t1 | AT1G70370 | 34.101 | 217 | 135 | 4 | 171 | 383 | 411 | 623 | 2.23e-33 | 131 |
| MS.gene31610.t1 | AT1G23760 | 33.180 | 217 | 137 | 5 | 171 | 383 | 407 | 619 | 1.11e-31 | 126 |
Find 74 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTGTTCCTTCCTTGA+TGG | 0.248730 | 1.1:+11008504 | None:intergenic |
| GGCAAAAGGTGTGAAGAAAT+TGG | 0.273962 | 1.1:-11008299 | MS.gene31610:CDS |
| ACTGAATTAGCAACTTCTTT+AGG | 0.281558 | 1.1:+11008571 | None:intergenic |
| TTCCACAGGATCATGTTGTT+TGG | 0.285326 | 1.1:-11008045 | MS.gene31610:CDS |
| TGTACTTTGCTTGAAGAAAA+AGG | 0.287501 | 1.1:+11008547 | None:intergenic |
| TTGGACTTCCAGTACACTTC+AGG | 0.301847 | 1.1:+11010980 | None:intergenic |
| ACTTGAAAAGCCAAATGTTT+AGG | 0.303666 | 1.1:+11008109 | None:intergenic |
| TCCACAGGATCATGTTGTTT+GGG | 0.305699 | 1.1:-11008044 | MS.gene31610:CDS |
| CATTTGAGTTGTGGGAAGTT+TGG | 0.322640 | 1.1:+11010961 | None:intergenic |
| AGGAGATCAGTGATGGCTTT+TGG | 0.342434 | 1.1:+11010938 | None:intergenic |
| GTGCCTTTGGAAGGTGTTGA+TGG | 0.355685 | 1.1:-11008184 | MS.gene31610:CDS |
| TGTGACGTCATTGGAATCTA+TGG | 0.355906 | 1.1:-11008413 | MS.gene31610:CDS |
| ATAAGTGAGTGTGAAGAAAA+TGG | 0.356965 | 1.1:-11008460 | MS.gene31610:CDS |
| AAGAAGAAAAGTGCTACATT+TGG | 0.370145 | 1.1:+11008673 | None:intergenic |
| ACAATGGAATCCTAAACATT+TGG | 0.370419 | 1.1:-11008119 | MS.gene31610:CDS |
| TAAAGTTTACTCTGTGCCTT+TGG | 0.380290 | 1.1:-11008197 | MS.gene31610:CDS |
| TGTGGAAGGAAGTGGCAAAC+TGG | 0.411004 | 1.1:+11008061 | None:intergenic |
| AAAGCTTTGTGTGACGTCAT+TGG | 0.419902 | 1.1:-11008422 | MS.gene31610:CDS |
| GGAGGTGTGAATGTTGATTC+CGG | 0.428495 | 1.1:-11008982 | MS.gene31610:CDS |
| GCAAAAGGTGTGAAGAAATT+GGG | 0.438714 | 1.1:-11008298 | MS.gene31610:CDS |
| TACATTGAGTATGATAAAGA+TGG | 0.440841 | 1.1:+11011145 | None:intergenic |
| CAAGAATATGTAATGGCAAA+AGG | 0.445313 | 1.1:-11008313 | MS.gene31610:CDS |
| CCTTGATGGAGAACATGTTA+AGG | 0.448883 | 1.1:+11008518 | None:intergenic |
| ATCACTGATCTCCTTCATCT+TGG | 0.451925 | 1.1:-11010929 | MS.gene31610:intron |
| CAAGTGCTCAATGTTCAACC+TGG | 0.454270 | 1.1:-11008091 | MS.gene31610:CDS |
| GATTTCACTACTTCGAAACT+TGG | 0.458312 | 1.1:-11008388 | MS.gene31610:CDS |
| GTCAATGTTCATGCAGGAAA+AGG | 0.459109 | 1.1:-11008784 | MS.gene31610:CDS |
| ACATTCACTGAGGTTCCTCC+TGG | 0.460070 | 1.1:+11008949 | None:intergenic |
| TTAGAAAAGGATTTACATCA+AGG | 0.470233 | 1.1:-11008652 | MS.gene31610:CDS |
| ACATTCACTGCTGTTCCACC+TGG | 0.477807 | 1.1:+11008886 | None:intergenic |
| TTTCCAACTGAAACATGTAC+TGG | 0.492608 | 1.1:+11008751 | None:intergenic |
| TTAACTGCTGTTCCACCACC+TGG | 0.493188 | 1.1:+11008823 | None:intergenic |
| TGGACTTCCAGTACACTTCA+GGG | 0.497027 | 1.1:+11010981 | None:intergenic |
| AGTTTGCCACTTCCTTCCAC+AGG | 0.501409 | 1.1:-11008059 | MS.gene31610:CDS |
| TGTGAAGAAAATGGTATCAA+AGG | 0.502134 | 1.1:-11008451 | MS.gene31610:CDS |
| GGTGGAGTCCATGTTGATGC+AGG | 0.515104 | 1.1:-11008919 | MS.gene31610:CDS |
| GTTTACTCTGTGCCTTTGGA+AGG | 0.519063 | 1.1:-11008193 | MS.gene31610:CDS |
| ACATCAGTAGATGTAGGAAA+AGG | 0.519485 | 1.1:-11009003 | MS.gene31610:CDS |
| TGGCAAACTGGAACAGTCCC+AGG | 0.519503 | 1.1:+11008073 | None:intergenic |
| CATGATCCTGTGGAAGGAAG+TGG | 0.521693 | 1.1:+11008053 | None:intergenic |
| GTTCATGTAAATGCAGGTAA+AGG | 0.521792 | 1.1:-11008850 | MS.gene31610:CDS |
| AAAGGAACATCAGTAGATGT+AGG | 0.527977 | 1.1:-11009009 | MS.gene31610:CDS |
| ACCTCAGTGAATGTTGGAAA+AGG | 0.535317 | 1.1:-11008940 | MS.gene31610:CDS |
| CCTTAACATGTTCTCCATCA+AGG | 0.536982 | 1.1:-11008518 | MS.gene31610:CDS |
| GGTGGAACAGCAGTGAATGT+TGG | 0.538800 | 1.1:-11008883 | MS.gene31610:CDS |
| GTTCATGCAGGAAAAGGAAG+AGG | 0.544075 | 1.1:-11008778 | MS.gene31610:CDS |
| ACAGCAGTTAATGTTGGAAA+AGG | 0.545041 | 1.1:-11008811 | MS.gene31610:CDS |
| TCAGTGAATGTTGGAAAAGG+TGG | 0.545979 | 1.1:-11008937 | MS.gene31610:CDS |
| AAACCAGTACATGTTTCAGT+TGG | 0.548855 | 1.1:-11008754 | MS.gene31610:CDS |
| GGTGGAGTTCATGTAAATGC+AGG | 0.553242 | 1.1:-11008856 | MS.gene31610:CDS |
| GCAGTTAATGTTGGAAAAGG+TGG | 0.564699 | 1.1:-11008808 | MS.gene31610:CDS |
| GGAGGAACCTCAGTGAATGT+TGG | 0.568767 | 1.1:-11008946 | MS.gene31610:CDS |
| ATATGTACTAACCAAGATGA+AGG | 0.569351 | 1.1:+11010918 | None:intergenic |
| GGTGGAACAGCAGTTAATGT+TGG | 0.569822 | 1.1:-11008817 | MS.gene31610:CDS |
| GCAGTGAATGTTGGAAAAGG+TGG | 0.574359 | 1.1:-11008874 | MS.gene31610:CDS |
| ACACAACAACAGCTTTAACT+CGG | 0.579233 | 1.1:+11008158 | None:intergenic |
| GGTGGTGTCAATGTTCATGC+AGG | 0.582435 | 1.1:-11008790 | MS.gene31610:CDS |
| TGACTTGCAAGAATATGTAA+TGG | 0.583650 | 1.1:-11008320 | MS.gene31610:CDS |
| AACATGTTCTCCATCAAGGA+AGG | 0.601008 | 1.1:-11008514 | MS.gene31610:CDS |
| GACTTCCAGTACACTTCAGG+GGG | 0.602058 | 1.1:+11010983 | None:intergenic |
| AAGTGCTCAATGTTCAACCT+GGG | 0.607659 | 1.1:-11008090 | MS.gene31610:CDS |
| GGTAAAGGAAAACCAGGTGG+TGG | 0.607966 | 1.1:-11008835 | MS.gene31610:CDS |
| ACAGCAGTGAATGTTGGAAA+AGG | 0.617678 | 1.1:-11008877 | MS.gene31610:CDS |
| TCAGTAGATGTAGGAAAAGG+AGG | 0.618497 | 1.1:-11009000 | MS.gene31610:CDS |
| GTAGATTGGACAGAAGAGAA+AGG | 0.619254 | 1.1:-11009027 | MS.gene31610:intron |
| CTTCCATCAACACCTTCCAA+AGG | 0.627468 | 1.1:+11008181 | None:intergenic |
| GGACTTCCAGTACACTTCAG+GGG | 0.632263 | 1.1:+11010982 | None:intergenic |
| AAGATGAAGGAGATCAGTGA+TGG | 0.634746 | 1.1:+11010931 | None:intergenic |
| AGAAAATGGTATCAAAGGAG+AGG | 0.637281 | 1.1:-11008446 | MS.gene31610:CDS |
| AAACAACATGATCCTGTGGA+AGG | 0.641220 | 1.1:+11008047 | None:intergenic |
| ACCCAAACAACATGATCCTG+TGG | 0.647573 | 1.1:+11008043 | None:intergenic |
| AATGCAGGTAAAGGAAAACC+AGG | 0.656269 | 1.1:-11008841 | MS.gene31610:CDS |
| GTCACACTGATACTTCACAA+TGG | 0.703629 | 1.1:-11008135 | MS.gene31610:CDS |
| GCAGGTAAAGGAAAACCAGG+TGG | 0.762633 | 1.1:-11008838 | MS.gene31610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAATTTCGATATTT+AGG | + | chr1.1:11008985-11009004 | None:intergenic | 10.0% |
| !!! | TTTTATTAAATAAAATGAAC+GGG | - | chr1.1:11008996-11009015 | MS.gene31610:CDS | 10.0% |
| !! | ATAGTATATATAGTTATGAA+TGG | - | chr1.1:11008309-11008328 | MS.gene31610:CDS | 15.0% |
| !! | ATATCATCATATATAAAGAT+TGG | - | chr1.1:11009069-11009088 | MS.gene31610:intron | 15.0% |
| !! | ATTTATAAAGTAACATTGAT+AGG | - | chr1.1:11008839-11008858 | MS.gene31610:CDS | 15.0% |
| !! | TAAAAAGGAACTAAAATATT+AGG | + | chr1.1:11008109-11008128 | None:intergenic | 15.0% |
| !! | TACAATCATTTCTTATTATA+TGG | - | chr1.1:11009571-11009590 | MS.gene31610:intron | 15.0% |
| !! | TTAGGAGATAATATATAAAT+AGG | - | chr1.1:11008609-11008628 | MS.gene31610:CDS | 15.0% |
| !!! | ATTGGTTTGTAATAAAAAAT+CGG | + | chr1.1:11009785-11009804 | None:intergenic | 15.0% |
| !!! | TTCTTCTAAAAATAACTTAT+TGG | + | chr1.1:11009486-11009505 | None:intergenic | 15.0% |
| !!! | TTTGGAAATTTTCAAAAAAA+TGG | - | chr1.1:11009985-11010004 | MS.gene31610:intron | 15.0% |
| !! | AAAAAGACTAATAAGGTTTA+TGG | + | chr1.1:11009107-11009126 | None:intergenic | 20.0% |
| !! | AAAAAGGAAAAAGACTAATA+AGG | + | chr1.1:11009114-11009133 | None:intergenic | 20.0% |
| !! | ACAAATTCTTCATAATGATA+AGG | + | chr1.1:11008590-11008609 | None:intergenic | 20.0% |
| !! | AGAACAAACAAAATGATTTA+TGG | - | chr1.1:11009451-11009470 | MS.gene31610:intron | 20.0% |
| !! | AGTAGTTAGAAATTTATCAT+AGG | - | chr1.1:11008676-11008695 | MS.gene31610:CDS | 20.0% |
| !! | ATAATTTCACATATTAAGAC+TGG | + | chr1.1:11009043-11009062 | None:intergenic | 20.0% |
| !! | ATATATATGAATGTGTAGAT+TGG | - | chr1.1:11010156-11010175 | MS.gene31610:intron | 20.0% |
| !! | CAAACTAATGAAATTTGATT+CGG | - | chr1.1:11010091-11010110 | MS.gene31610:intron | 20.0% |
| !! | TGGATTAAAAAAATATGACT+TGG | + | chr1.1:11009712-11009731 | None:intergenic | 20.0% |
| !!! | AAACTTGAGAAAATTTTCAA+TGG | + | chr1.1:11009193-11009212 | None:intergenic | 20.0% |
| !!! | AAGTAGTTGTTGTATTTTAA+TGG | + | chr1.1:11009264-11009283 | None:intergenic | 20.0% |
| !!! | ATCATTATGAAGAATTTGTT+AGG | - | chr1.1:11008591-11008610 | MS.gene31610:CDS | 20.0% |
| !!! | CATATTTTTTTAATCCATTC+TGG | - | chr1.1:11009715-11009734 | MS.gene31610:intron | 20.0% |
| !!! | CATTTAATCTTCTACATTTT+TGG | - | chr1.1:11009967-11009986 | MS.gene31610:intron | 20.0% |
| !!! | CATTTTTTGCAATCAAATTT+AGG | + | chr1.1:11008481-11008500 | None:intergenic | 20.0% |
| ! | CGAATCAAATTTCATTAGTT+TGG | + | chr1.1:11010093-11010112 | None:intergenic | 25.0% |
| ! | GGAACCAAAATAACAAAAAT+AGG | + | chr1.1:11008355-11008374 | None:intergenic | 25.0% |
| ! | TACATTGAGTATGATAAAGA+TGG | + | chr1.1:11008055-11008074 | None:intergenic | 25.0% |
| ! | TATAAAGTAACATTGATAGG+TGG | - | chr1.1:11008842-11008861 | MS.gene31610:CDS | 25.0% |
| ! | TATTGAATGACTTATGAGAT+AGG | - | chr1.1:11008401-11008420 | MS.gene31610:CDS | 25.0% |
| ! | TTAGAAAAGGATTTACATCA+AGG | - | chr1.1:11010545-11010564 | MS.gene31610:intron | 25.0% |
| ! | TTATCATAGGTGAATAAGTA+AGG | - | chr1.1:11008689-11008708 | MS.gene31610:CDS | 25.0% |
| ! | TTCTAATTGAGTTATACTCA+TGG | - | chr1.1:11008944-11008963 | MS.gene31610:CDS | 25.0% |
| ! | TTGAAAATGGAGAAAACTAA+TGG | + | chr1.1:11009235-11009254 | None:intergenic | 25.0% |
| ! | TTGTGTCAATTCATAATCAT+AGG | + | chr1.1:11010133-11010152 | None:intergenic | 25.0% |
| !! | AAACTTGAGAGAATTTTCAT+CGG | - | chr1.1:11009345-11009364 | MS.gene31610:intron | 25.0% |
| !! | CAAATTTCATTAGTTTGGAT+TGG | + | chr1.1:11010088-11010107 | None:intergenic | 25.0% |
| !! | TTGAGAAAATTTTCAATGGA+GGG | + | chr1.1:11009189-11009208 | None:intergenic | 25.0% |
| !!! | CACACCTATTTTTGTTATTT+TGG | - | chr1.1:11008348-11008367 | MS.gene31610:CDS | 25.0% |
| !!! | TAGTTGTTGTATTTTAATGG+TGG | + | chr1.1:11009261-11009280 | None:intergenic | 25.0% |
| !!! | TTTTTTAATCCATTCTGGTT+CGG | - | chr1.1:11009720-11009739 | MS.gene31610:intron | 25.0% |
| AAAATGGAGAAAACTAATGG+TGG | + | chr1.1:11009232-11009251 | None:intergenic | 30.0% | |
| ACAATGGAATCCTAAACATT+TGG | - | chr1.1:11011078-11011097 | MS.gene31610:intron | 30.0% | |
| ACCATAATGGTATATACCAT+TGG | - | chr1.1:11008762-11008781 | MS.gene31610:CDS | 30.0% | |
| ACTGAATTAGCAACTTCTTT+AGG | + | chr1.1:11010629-11010648 | None:intergenic | 30.0% | |
| ACTTGAAAAGCCAAATGTTT+AGG | + | chr1.1:11011091-11011110 | None:intergenic | 30.0% | |
| AGTTATGAATGGAACACATT+TGG | - | chr1.1:11008320-11008339 | MS.gene31610:CDS | 30.0% | |
| ATAACACTTGTGTACCATAA+TGG | - | chr1.1:11008749-11008768 | MS.gene31610:CDS | 30.0% | |
| ATAAGGTTTATGGCCTTTAA+CGG | + | chr1.1:11009097-11009116 | None:intergenic | 30.0% | |
| ATAAGTGAGTGTGAAGAAAA+TGG | - | chr1.1:11010737-11010756 | MS.gene31610:intron | 30.0% | |
| ATATACCATTGGTACCTTAA+AGG | - | chr1.1:11008887-11008906 | MS.gene31610:CDS | 30.0% | |
| ATATGTACTAACCAAGATGA+AGG | + | chr1.1:11008282-11008301 | None:intergenic | 30.0% | |
| CAAGAATATGTAATGGCAAA+AGG | - | chr1.1:11010884-11010903 | MS.gene31610:intron | 30.0% | |
| CACGTGATAACTAAAGTATA+TGG | - | chr1.1:11008501-11008520 | MS.gene31610:CDS | 30.0% | |
| CACTCCTAATTATCTTAGTT+CGG | + | chr1.1:11009645-11009664 | None:intergenic | 30.0% | |
| CATGCATAATTAGTGCAATT+GGG | - | chr1.1:11009154-11009173 | MS.gene31610:intron | 30.0% | |
| CTAAAGTATATGGTCTAAAG+TGG | - | chr1.1:11008511-11008530 | MS.gene31610:CDS | 30.0% | |
| GACAGTAAAAAACTGCATAA+GGG | + | chr1.1:11010964-11010983 | None:intergenic | 30.0% | |
| GCTCATATATGTATCCATTA+GGG | + | chr1.1:11009623-11009642 | None:intergenic | 30.0% | |
| GGAATACAATGTTTAAACTC+TGG | - | chr1.1:11008710-11008729 | MS.gene31610:CDS | 30.0% | |
| TAAAGTGGTCCAATTGATAA+AGG | - | chr1.1:11008526-11008545 | MS.gene31610:CDS | 30.0% | |
| TAATTAGTGCAATTGGGATT+TGG | - | chr1.1:11009160-11009179 | MS.gene31610:intron | 30.0% | |
| TCATGCATAATTAGTGCAAT+TGG | - | chr1.1:11009153-11009172 | MS.gene31610:intron | 30.0% | |
| TGACAGTAAAAAACTGCATA+AGG | + | chr1.1:11010965-11010984 | None:intergenic | 30.0% | |
| TGTACTTTGCTTGAAGAAAA+AGG | + | chr1.1:11010653-11010672 | None:intergenic | 30.0% | |
| TGTGAAGAAAATGGTATCAA+AGG | - | chr1.1:11010746-11010765 | MS.gene31610:intron | 30.0% | |
| TTTGAATCACTGAATTGAAC+TGG | + | chr1.1:11009684-11009703 | None:intergenic | 30.0% | |
| ! | AAACCACTTCAAGTTTGATT+GGG | + | chr1.1:11009751-11009770 | None:intergenic | 30.0% |
| ! | AGCACTTTTCTTCTTAGAAA+AGG | - | chr1.1:11010532-11010551 | MS.gene31610:intron | 30.0% |
| ! | CTTGAGAAAATTTTCAATGG+AGG | + | chr1.1:11009190-11009209 | None:intergenic | 30.0% |
| ! | TGACTTGCAAGAATATGTAA+TGG | - | chr1.1:11010877-11010896 | MS.gene31610:intron | 30.0% |
| ! | TGAGAAAATTTTCAATGGAG+GGG | + | chr1.1:11009188-11009207 | None:intergenic | 30.0% |
| ! | TTAATGGTGGAGATTGAAAA+TGG | + | chr1.1:11009248-11009267 | None:intergenic | 30.0% |
| !! | AAGAAGAAAAGTGCTACATT+TGG | + | chr1.1:11010527-11010546 | None:intergenic | 30.0% |
| !! | CTAATGAAATTTGATTCGGT+CGG | - | chr1.1:11010095-11010114 | MS.gene31610:intron | 30.0% |
| !! | CTAATGGTGGATATTGAAAA+TGG | + | chr1.1:11009219-11009238 | None:intergenic | 30.0% |
| !! | TAATGAAATTTGATTCGGTC+GGG | - | chr1.1:11010096-11010115 | MS.gene31610:intron | 30.0% |
| !!! | GTTTTTTTACCAGAGATGTT+AGG | + | chr1.1:11008376-11008395 | None:intergenic | 30.0% |
| AAACCAGTACATGTTTCAGT+TGG | - | chr1.1:11010443-11010462 | MS.gene31610:intron | 35.0% | |
| AAAGGAACATCAGTAGATGT+AGG | - | chr1.1:11010188-11010207 | MS.gene31610:intron | 35.0% | |
| ACAGCAGTTAATGTTGGAAA+AGG | - | chr1.1:11010386-11010405 | MS.gene31610:intron | 35.0% | |
| ACATCAGTAGATGTAGGAAA+AGG | - | chr1.1:11010194-11010213 | MS.gene31610:intron | 35.0% | |
| ACTTAGTATGACAATTGCAC+GGG | + | chr1.1:11009383-11009402 | None:intergenic | 35.0% | |
| ACTTTCTCTCTCATGATTGA+TGG | - | chr1.1:11009304-11009323 | MS.gene31610:intron | 35.0% | |
| AGAAAATGGTATCAAAGGAG+AGG | - | chr1.1:11010751-11010770 | MS.gene31610:intron | 35.0% | |
| AGGCACATGCTAAAATAGTT+TGG | + | chr1.1:11008089-11008108 | None:intergenic | 35.0% | |
| ATAAAGATTGGACCCGTTAA+AGG | - | chr1.1:11009081-11009100 | MS.gene31610:intron | 35.0% | |
| ATTCCACTTGTGTACCTTTA+AGG | + | chr1.1:11008904-11008923 | None:intergenic | 35.0% | |
| CACTTAGTATGACAATTGCA+CGG | + | chr1.1:11009384-11009403 | None:intergenic | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | - | chr1.1:11010809-11010828 | MS.gene31610:intron | 35.0% | |
| GCAGCATAGTTGTACAAAAA+TGG | + | chr1.1:11010479-11010498 | None:intergenic | 35.0% | |
| GCCAATGGTATATACCATTA+TGG | + | chr1.1:11008766-11008785 | None:intergenic | 35.0% | |
| GGCTCATATATGTATCCATT+AGG | + | chr1.1:11009624-11009643 | None:intergenic | 35.0% | |
| GTACCAATGGTATATACCAT+TGG | + | chr1.1:11008882-11008901 | None:intergenic | 35.0% | |
| GTTCATGTAAATGCAGGTAA+AGG | - | chr1.1:11010347-11010366 | MS.gene31610:intron | 35.0% | |
| TAAAGTTTACTCTGTGCCTT+TGG | - | chr1.1:11011000-11011019 | MS.gene31610:CDS | 35.0% | |
| TAAGGTTTATGGCCTTTAAC+GGG | + | chr1.1:11009096-11009115 | None:intergenic | 35.0% | |
| TGAACCGAACCTTTATCAAT+TGG | + | chr1.1:11008538-11008557 | None:intergenic | 35.0% | |
| TGAGCCGAACTAAGATAATT+AGG | - | chr1.1:11009638-11009657 | MS.gene31610:intron | 35.0% | |
| TGCACTAATTATGCATGAGT+CGG | + | chr1.1:11009151-11009170 | None:intergenic | 35.0% | |
| TGGTCCAATTGATAAAGGTT+CGG | - | chr1.1:11008531-11008550 | MS.gene31610:CDS | 35.0% | |
| TTTCCAACTGAAACATGTAC+TGG | + | chr1.1:11010449-11010468 | None:intergenic | 35.0% | |
| ! | ACACAACAACAGCTTTAACT+CGG | + | chr1.1:11011042-11011061 | None:intergenic | 35.0% |
| ! | CAAACCACTTCAAGTTTGAT+TGG | + | chr1.1:11009752-11009771 | None:intergenic | 35.0% |
| ! | GCAAAAGGTGTGAAGAAATT+GGG | - | chr1.1:11010899-11010918 | MS.gene31610:intron | 35.0% |
| ! | TTCTCTCAAGTTTTCTCATG+TGG | + | chr1.1:11009338-11009357 | None:intergenic | 35.0% |
| ! | TTTTGCATCATCGTTTGAGT+TGG | + | chr1.1:11010600-11010619 | None:intergenic | 35.0% |
| !! | AAACTTGAAGTGGTTTGCTT+TGG | - | chr1.1:11009755-11009774 | MS.gene31610:intron | 35.0% |
| !! | TTGTTTTTCCTGCATCAACA+TGG | + | chr1.1:11010289-11010308 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTCCTAACATCTC+TGG | - | chr1.1:11008364-11008383 | MS.gene31610:CDS | 35.0% |
| !!! | TGTACTGTTTTGAAGTCCTT+CGG | + | chr1.1:11009555-11009574 | None:intergenic | 35.0% |
| AAACAACATGATCCTGTGGA+AGG | + | chr1.1:11011153-11011172 | None:intergenic | 40.0% | |
| AACATGTTCTCCATCAAGGA+AGG | - | chr1.1:11010683-11010702 | MS.gene31610:intron | 40.0% | |
| AAGATGAAGGAGATCAGTGA+TGG | + | chr1.1:11008269-11008288 | None:intergenic | 40.0% | |
| AAGTGCTCAATGTTCAACCT+GGG | - | chr1.1:11011107-11011126 | MS.gene31610:intron | 40.0% | |
| AATGCAGGTAAAGGAAAACC+AGG | - | chr1.1:11010356-11010375 | MS.gene31610:intron | 40.0% | |
| ACAGCAGTGAATGTTGGAAA+AGG | - | chr1.1:11010320-11010339 | MS.gene31610:intron | 40.0% | |
| ACCACATTCTAATTGGCCAA+TGG | + | chr1.1:11008781-11008800 | None:intergenic | 40.0% | |
| ACCATTGGCCAATTAGAATG+TGG | - | chr1.1:11008777-11008796 | MS.gene31610:CDS | 40.0% | |
| ACCTCAGTGAATGTTGGAAA+AGG | - | chr1.1:11010257-11010276 | MS.gene31610:intron | 40.0% | |
| ACGCATAATCGCGATGATTA+AGG | - | chr1.1:11010034-11010053 | MS.gene31610:intron | 40.0% | |
| ATCACTGATCTCCTTCATCT+TGG | - | chr1.1:11008268-11008287 | MS.gene31610:CDS | 40.0% | |
| CACTAATTATGCATGAGTCG+GGG | + | chr1.1:11009149-11009168 | None:intergenic | 40.0% | |
| CATCCCAATCAAACTTGAAG+TGG | - | chr1.1:11009745-11009764 | MS.gene31610:intron | 40.0% | |
| CCTTAACATGTTCTCCATCA+AGG | - | chr1.1:11010679-11010698 | MS.gene31610:intron | 40.0% | |
| CCTTGATGGAGAACATGTTA+AGG | + | chr1.1:11010682-11010701 | None:intergenic | 40.0% | |
| GATTCCGGAAAAACAAAACC+AGG | - | chr1.1:11010230-11010249 | MS.gene31610:intron | 40.0% | |
| GCACTAATTATGCATGAGTC+GGG | + | chr1.1:11009150-11009169 | None:intergenic | 40.0% | |
| GCAGTTAATGTTGGAAAAGG+TGG | - | chr1.1:11010389-11010408 | MS.gene31610:intron | 40.0% | |
| GTAGATTGGACAGAAGAGAA+AGG | - | chr1.1:11010170-11010189 | MS.gene31610:intron | 40.0% | |
| GTCAATGTTCATGCAGGAAA+AGG | - | chr1.1:11010413-11010432 | MS.gene31610:intron | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | - | chr1.1:11011062-11011081 | MS.gene31610:intron | 40.0% | |
| GTGAGTTATGTTCACTGAGA+CGG | - | chr1.1:11009401-11009420 | MS.gene31610:intron | 40.0% | |
| TAATCATCGCGATTATGCGT+GGG | + | chr1.1:11010034-11010053 | None:intergenic | 40.0% | |
| TAGTGTTCGATAGAAACCGA+AGG | - | chr1.1:11009536-11009555 | MS.gene31610:intron | 40.0% | |
| TCAGTAGATGTAGGAAAAGG+AGG | - | chr1.1:11010197-11010216 | MS.gene31610:intron | 40.0% | |
| TCAGTGAATGTTGGAAAAGG+TGG | - | chr1.1:11010260-11010279 | MS.gene31610:intron | 40.0% | |
| TGAGTTATGTTCACTGAGAC+GGG | - | chr1.1:11009402-11009421 | MS.gene31610:intron | 40.0% | |
| TGGCCAATGGTATATACCAT+TGG | - | chr1.1:11008876-11008895 | MS.gene31610:CDS | 40.0% | |
| TGTATCCATTAGGGTGTGTT+TGG | + | chr1.1:11009614-11009633 | None:intergenic | 40.0% | |
| TGTGACGTCATTGGAATCTA+TGG | - | chr1.1:11010784-11010803 | MS.gene31610:intron | 40.0% | |
| TTAATCATCGCGATTATGCG+TGG | + | chr1.1:11010035-11010054 | None:intergenic | 40.0% | |
| TTCCACAGGATCATGTTGTT+TGG | - | chr1.1:11011152-11011171 | MS.gene31610:CDS | 40.0% | |
| TTCTTCTGTTCCTTCCTTGA+TGG | + | chr1.1:11010696-11010715 | None:intergenic | 40.0% | |
| TTTGAACGAGCTGAGTTCAT+TGG | + | chr1.1:11009803-11009822 | None:intergenic | 40.0% | |
| ! | AAAGCTTTGTGTGACGTCAT+TGG | - | chr1.1:11010775-11010794 | MS.gene31610:intron | 40.0% |
| ! | ACCTTTTCCAACATTCACTG+AGG | + | chr1.1:11010261-11010280 | None:intergenic | 40.0% |
| ! | CACTTCAAGTTTGATTGGGA+TGG | + | chr1.1:11009747-11009766 | None:intergenic | 40.0% |
| ! | GGCAAAAGGTGTGAAGAAAT+TGG | - | chr1.1:11010898-11010917 | MS.gene31610:intron | 40.0% |
| ! | GTACCTTAAAGGTACACAAG+TGG | - | chr1.1:11008898-11008917 | MS.gene31610:CDS | 40.0% |
| ! | TCCACAGGATCATGTTGTTT+GGG | - | chr1.1:11011153-11011172 | MS.gene31610:CDS | 40.0% |
| !! | AATTAGGAGTGTTCACGAGT+CGG | - | chr1.1:11009654-11009673 | MS.gene31610:intron | 40.0% |
| !! | CATTTGAGTTGTGGGAAGTT+TGG | + | chr1.1:11008239-11008258 | None:intergenic | 40.0% |
| !! | GTGTACCTTTAAGGTACCAA+TGG | + | chr1.1:11008895-11008914 | None:intergenic | 40.0% |
| !!! | GCTTTTGGCATTTGAGTTGT+GGG | + | chr1.1:11008247-11008266 | None:intergenic | 40.0% |
| !!! | TCCTCCTGGTTTTGTTTTTC+CGG | + | chr1.1:11010237-11010256 | None:intergenic | 40.0% |
| AAGAGCCAAACACACCCTAA+TGG | - | chr1.1:11009606-11009625 | MS.gene31610:intron | 45.0% | |
| ACCCAAACAACATGATCCTG+TGG | + | chr1.1:11011157-11011176 | None:intergenic | 45.0% | |
| ATTATGCATGAGTCGGGGAT+AGG | + | chr1.1:11009144-11009163 | None:intergenic | 45.0% | |
| CAAGTGCTCAATGTTCAACC+TGG | - | chr1.1:11011106-11011125 | MS.gene31610:intron | 45.0% | |
| CTTCCATCAACACCTTCCAA+AGG | + | chr1.1:11011019-11011038 | None:intergenic | 45.0% | |
| GAAGAGACATTGCAGTATGC+AGG | + | chr1.1:11008927-11008946 | None:intergenic | 45.0% | |
| GATAGGTGGCACACTCTAAT+TGG | - | chr1.1:11008856-11008875 | MS.gene31610:CDS | 45.0% | |
| GATGCAGGAAAAACAAAGCC+AGG | - | chr1.1:11010293-11010312 | MS.gene31610:intron | 45.0% | |
| GCAGTGAATGTTGGAAAAGG+TGG | - | chr1.1:11010323-11010342 | MS.gene31610:intron | 45.0% | |
| GCCAATTAGAATGTGGTACG+TGG | - | chr1.1:11008784-11008803 | MS.gene31610:CDS | 45.0% | |
| GCCACGTACCACATTCTAAT+TGG | + | chr1.1:11008788-11008807 | None:intergenic | 45.0% | |
| GGGGATAGGCTATGCAAAAA+AGG | + | chr1.1:11009130-11009149 | None:intergenic | 45.0% | |
| GGTGGAACAGCAGTTAATGT+TGG | - | chr1.1:11010380-11010399 | MS.gene31610:intron | 45.0% | |
| GGTGGAGTTCATGTAAATGC+AGG | - | chr1.1:11010341-11010360 | MS.gene31610:intron | 45.0% | |
| GTATGACAATTGCACGGGTT+TGG | + | chr1.1:11009378-11009397 | None:intergenic | 45.0% | |
| GTTCATGCAGGAAAAGGAAG+AGG | - | chr1.1:11010419-11010438 | MS.gene31610:intron | 45.0% | |
| GTTTACTCTGTGCCTTTGGA+AGG | - | chr1.1:11011004-11011023 | MS.gene31610:CDS | 45.0% | |
| TCCGGAAAAACAAAACCAGG+AGG | - | chr1.1:11010233-11010252 | MS.gene31610:intron | 45.0% | |
| TGGACTTCCAGTACACTTCA+GGG | + | chr1.1:11008219-11008238 | None:intergenic | 45.0% | |
| TTGGACTTCCAGTACACTTC+AGG | + | chr1.1:11008220-11008239 | None:intergenic | 45.0% | |
| ! | AGGAGATCAGTGATGGCTTT+TGG | + | chr1.1:11008262-11008281 | None:intergenic | 45.0% |
| !! | GGAGGTGTGAATGTTGATTC+CGG | - | chr1.1:11010215-11010234 | MS.gene31610:intron | 45.0% |
| !!! | GGCTTTTGGCATTTGAGTTG+TGG | + | chr1.1:11008248-11008267 | None:intergenic | 45.0% |
| !! | AAAATAAAAAATAAAATCTT+AGG | + | chr1.1:11008444-11008463 | None:intergenic | 5.0% |
| !! | TTATTTATGAAATAATAAAA+AGG | + | chr1.1:11008124-11008143 | None:intergenic | 5.0% |
| !!! | ATTTGATATATTTTTTTAAA+GGG | + | chr1.1:11008814-11008833 | None:intergenic | 5.0% |
| !!! | ATTTTATTAAATAAAATGAA+CGG | - | chr1.1:11008995-11009014 | MS.gene31610:CDS | 5.0% |
| !!! | TAAGATTTTATTTTTTATTT+TGG | - | chr1.1:11008443-11008462 | MS.gene31610:CDS | 5.0% |
| !!! | TATTTGATATATTTTTTTAA+AGG | + | chr1.1:11008815-11008834 | None:intergenic | 5.0% |
| ACATTCACTGAGGTTCCTCC+TGG | + | chr1.1:11010251-11010270 | None:intergenic | 50.0% | |
| ACATTCACTGCTGTTCCACC+TGG | + | chr1.1:11010314-11010333 | None:intergenic | 50.0% | |
| CACTGAGACGGGTACATACT+CGG | - | chr1.1:11009413-11009432 | MS.gene31610:intron | 50.0% | |
| CATGATCCTGTGGAAGGAAG+TGG | + | chr1.1:11011147-11011166 | None:intergenic | 50.0% | |
| GACTTCCAGTACACTTCAGG+GGG | + | chr1.1:11008217-11008236 | None:intergenic | 50.0% | |
| GCAGGAAAAACAAAGCCAGG+TGG | - | chr1.1:11010296-11010315 | MS.gene31610:intron | 50.0% | |
| GCAGGTAAAGGAAAACCAGG+TGG | - | chr1.1:11010359-11010378 | MS.gene31610:intron | 50.0% | |
| GGACTTCCAGTACACTTCAG+GGG | + | chr1.1:11008218-11008237 | None:intergenic | 50.0% | |
| GGAGGAACCTCAGTGAATGT+TGG | - | chr1.1:11010251-11010270 | MS.gene31610:intron | 50.0% | |
| GGCACACTCTAATTGGCCAA+TGG | - | chr1.1:11008863-11008882 | MS.gene31610:CDS | 50.0% | |
| GGTAAAGGAAAACCAGGTGG+TGG | - | chr1.1:11010362-11010381 | MS.gene31610:intron | 50.0% | |
| GGTGGAACAGCAGTGAATGT+TGG | - | chr1.1:11010314-11010333 | MS.gene31610:intron | 50.0% | |
| TGTGGAAGGAAGTGGCAAAC+TGG | + | chr1.1:11011139-11011158 | None:intergenic | 50.0% | |
| TTAACTGCTGTTCCACCACC+TGG | + | chr1.1:11010377-11010396 | None:intergenic | 50.0% | |
| ! | AGTTTGCCACTTCCTTCCAC+AGG | - | chr1.1:11011138-11011157 | MS.gene31610:intron | 50.0% |
| ! | GATTCGGTCGGGTAAGAGTT+TGG | - | chr1.1:11010107-11010126 | MS.gene31610:intron | 50.0% |
| ! | GGTGGTGTCAATGTTCATGC+AGG | - | chr1.1:11010407-11010426 | MS.gene31610:intron | 50.0% |
| !! | CGATTATGCGTGGGTTGGTT+TGG | + | chr1.1:11010025-11010044 | None:intergenic | 50.0% |
| !! | GTGCCTTTGGAAGGTGTTGA+TGG | - | chr1.1:11011013-11011032 | MS.gene31610:CDS | 50.0% |
| CATCGCGATTATGCGTGGGT+TGG | + | chr1.1:11010030-11010049 | None:intergenic | 55.0% | |
| CCAGTACACTTCAGGGGGTA+AGG | + | chr1.1:11008212-11008231 | None:intergenic | 55.0% | |
| CCTTACCCCCTGAAGTGTAC+TGG | - | chr1.1:11008209-11008228 | MS.gene31610:CDS | 55.0% | |
| GGTGGAGTCCATGTTGATGC+AGG | - | chr1.1:11010278-11010297 | MS.gene31610:intron | 55.0% | |
| TGGCAAACTGGAACAGTCCC+AGG | + | chr1.1:11011127-11011146 | None:intergenic | 55.0% | |
| TGGGATGGACCGAACCAGAA+TGG | + | chr1.1:11009732-11009751 | None:intergenic | 55.0% | |
| TTCAGGGGGTAAGGCAGCAT+GGG | + | chr1.1:11008203-11008222 | None:intergenic | 55.0% | |
| CTTCAGGGGGTAAGGCAGCA+TGG | + | chr1.1:11008204-11008223 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11008033 | 11011186 | 11008033 | ID=MS.gene31610 |
| chr1.1 | mRNA | 11008033 | 11011186 | 11008033 | ID=MS.gene31610.t1;Parent=MS.gene31610 |
| chr1.1 | exon | 11011148 | 11011186 | 11011148 | ID=MS.gene31610.t1.exon1;Parent=MS.gene31610.t1 |
| chr1.1 | CDS | 11011148 | 11011186 | 11011148 | ID=cds.MS.gene31610.t1;Parent=MS.gene31610.t1 |
| chr1.1 | exon | 11010930 | 11011035 | 11010930 | ID=MS.gene31610.t1.exon2;Parent=MS.gene31610.t1 |
| chr1.1 | CDS | 11010930 | 11011035 | 11010930 | ID=cds.MS.gene31610.t1;Parent=MS.gene31610.t1 |
| chr1.1 | exon | 11008033 | 11009045 | 11008033 | ID=MS.gene31610.t1.exon3;Parent=MS.gene31610.t1 |
| chr1.1 | CDS | 11008033 | 11009045 | 11008033 | ID=cds.MS.gene31610.t1;Parent=MS.gene31610.t1 |
| Gene Sequence |
| Protein sequence |
