AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50682

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50682.t1 MTR_4g072310 98.925 93 1 0 1 93 1 93 2.31e-66 194
MS.gene50682.t1 MTR_4g072880 86.022 93 13 0 1 93 1 93 2.15e-58 174
MS.gene50682.t1 MTR_4g072270 87.097 93 12 0 1 93 1 93 9.37e-58 172
MS.gene50682.t1 MTR_4g072230 84.946 93 12 1 1 93 1 91 1.89e-55 166
MS.gene50682.t1 MTR_4g072250 83.871 93 14 1 1 93 1 92 1.07e-53 162
MS.gene50682.t1 MTR_4g072860 80.645 93 18 0 1 93 1 93 7.22e-53 160
MS.gene50682.t1 MTR_4g072500 76.344 93 21 1 1 93 1 92 2.81e-50 153
MS.gene50682.t1 MTR_4g072240 73.626 91 24 0 1 91 1 91 4.05e-49 150
MS.gene50682.t1 MTR_4g072530 75.824 91 21 1 1 91 1 90 3.89e-48 148
MS.gene50682.t1 MTR_4g072480 74.194 93 23 1 1 93 1 92 3.92e-48 148
MS.gene50682.t1 MTR_4g072620 74.194 93 23 1 1 93 1 92 6.56e-48 147
MS.gene50682.t1 MTR_3g084240 74.194 93 23 1 1 93 1 92 6.85e-48 147
MS.gene50682.t1 MTR_3g084150 73.118 93 24 1 1 93 1 92 7.82e-48 147
MS.gene50682.t1 MTR_4g072640 75.824 91 21 1 1 91 1 90 9.74e-48 147
MS.gene50682.t1 MTR_4g072570 75.269 93 22 1 1 93 1 92 1.23e-47 147
MS.gene50682.t1 MTR_4g072680 74.194 93 23 1 1 93 1 92 1.48e-47 146
MS.gene50682.t1 MTR_3g084170 74.194 93 23 1 1 93 1 92 2.45e-47 146
MS.gene50682.t1 MTR_4g072460 74.194 93 23 1 1 93 1 92 2.53e-47 146
MS.gene50682.t1 MTR_4g072220 69.892 93 28 0 1 93 1 93 3.28e-47 145
MS.gene50682.t1 MTR_4g072870 71.429 91 26 0 1 91 1 91 3.53e-47 145
MS.gene50682.t1 MTR_3g084180 72.043 93 25 1 1 93 1 92 7.41e-47 145
MS.gene50682.t1 MTR_4g072300 69.231 91 28 0 1 91 1 91 1.91e-46 144
MS.gene50682.t1 MTR_3g117630 73.333 90 24 0 4 93 3 92 2.62e-46 143
MS.gene50682.t1 MTR_8g461410 69.892 93 27 1 1 93 1 92 3.09e-46 143
MS.gene50682.t1 MTR_4g072730 71.739 92 25 1 1 92 1 91 4.58e-46 143
MS.gene50682.t1 MTR_3g110032 69.892 93 28 0 1 93 1 93 1.19e-45 142
MS.gene50682.t1 MTR_4g072370 73.626 91 21 1 1 91 1 88 1.25e-45 142
MS.gene50682.t1 MTR_4g050700 69.892 93 28 0 1 93 1 93 1.61e-45 141
MS.gene50682.t1 MTR_2g012410 69.892 93 28 0 1 93 1 93 1.61e-45 141
MS.gene50682.t1 MTR_4g072260 67.742 93 30 0 1 93 1 93 5.83e-45 140
MS.gene50682.t1 MTR_4g072850 74.468 94 23 1 1 93 1 94 5.94e-45 140
MS.gene50682.t1 MTR_3g110038 70.968 93 26 1 1 93 1 92 5.97e-45 140
MS.gene50682.t1 MTR_3g084220 70.968 93 26 1 1 93 1 92 6.38e-45 140
MS.gene50682.t1 MTR_4g072890 69.231 91 28 0 1 91 1 91 6.91e-45 140
MS.gene50682.t1 MTR_3g084250 69.892 93 27 1 1 93 1 92 6.18e-44 137
MS.gene50682.t1 MTR_3g084260 66.667 93 31 0 1 93 1 93 2.00e-42 134
MS.gene50682.t1 MTR_5g008360 77.215 79 18 0 15 93 5 83 2.13e-42 133
MS.gene50682.t1 MTR_4g072580 70.330 91 21 1 1 91 1 85 2.59e-42 133
MS.gene50682.t1 MTR_4g072290 69.892 93 14 1 1 93 1 79 2.64e-42 133
MS.gene50682.t1 MTR_3g110042 70.000 90 26 1 1 90 1 89 5.26e-42 132
MS.gene50682.t1 MTR_4g072740 70.330 91 21 1 1 91 1 85 7.08e-42 132
MS.gene50682.t1 MTR_4g072330 67.033 91 27 1 1 91 1 88 7.19e-42 132
MS.gene50682.t1 MTR_4g072660 66.667 93 25 1 1 93 1 87 1.23e-41 131
MS.gene50682.t1 MTR_4g072830 70.000 90 24 1 1 90 1 87 2.33e-41 131
MS.gene50682.t1 MTR_4g072490 68.132 91 23 1 1 91 1 85 4.14e-41 130
MS.gene50682.t1 MTR_4g072470 70.330 91 21 1 1 91 1 85 1.23e-40 129
MS.gene50682.t1 MTR_4g072940 69.565 92 27 1 3 93 33 124 2.04e-40 129
MS.gene50682.t1 MTR_5g008370 85.714 70 10 0 23 92 22 91 4.61e-40 129
MS.gene50682.t1 MTR_4g072610 69.231 91 21 1 1 91 1 84 1.70e-39 126
MS.gene50682.t1 MTR_3g084210 70.968 93 26 1 1 93 1 92 2.31e-39 126
MS.gene50682.t1 MTR_4g072630 65.934 91 26 1 1 91 1 86 3.39e-39 125
MS.gene50682.t1 MTR_3g084190 70.968 93 26 1 1 93 1 92 4.32e-39 125
MS.gene50682.t1 MTR_4g072600 67.033 91 24 1 1 91 1 85 7.70e-39 124
MS.gene50682.t1 MTR_4g072820 69.565 92 20 2 1 91 1 85 1.03e-38 124
MS.gene50682.t1 MTR_8g461420 71.429 91 25 1 1 91 1 90 2.42e-38 123
MS.gene50682.t1 MTR_3g084230 71.429 91 25 1 1 91 1 90 7.99e-38 122
MS.gene50682.t1 MTR_4g072465 64.835 91 27 1 1 91 1 86 8.08e-38 122
MS.gene50682.t1 MTR_4g072550 71.250 80 22 1 15 93 24 103 8.97e-38 122
MS.gene50682.t1 MTR_4g072540 67.033 91 25 1 1 91 1 86 1.30e-37 121
MS.gene50682.t1 MTR_4g072380 68.478 92 22 2 1 91 1 86 3.28e-37 120
MS.gene50682.t1 MTR_3g084160 67.742 93 29 1 1 93 1 92 3.55e-37 120
MS.gene50682.t1 MTR_3g110045 75.294 85 21 0 9 93 67 151 5.30e-37 122
MS.gene50682.t1 MTR_4g072650 64.835 91 25 1 1 91 1 84 7.49e-37 119
MS.gene50682.t1 MTR_4g072720 65.934 91 26 1 1 91 1 86 1.12e-36 119
MS.gene50682.t1 MTR_4g072670 67.033 91 25 1 1 91 1 86 1.51e-36 119
MS.gene50682.t1 MTR_4g072590 79.412 68 14 0 24 91 18 85 2.30e-35 115
MS.gene50682.t1 MTR_4g072510 62.637 91 29 1 1 91 1 86 3.88e-34 112
MS.gene50682.t1 MTR_4g072910 58.511 94 33 2 4 91 7 100 6.31e-33 110
MS.gene50682.t1 MTR_3g084200 69.863 73 21 1 1 73 1 72 2.03e-32 108
MS.gene50682.t1 MTR_4g072980 57.292 96 37 3 1 93 1 95 2.80e-32 108
MS.gene50682.t1 MTR_4g072560 62.651 83 23 2 9 90 22 97 3.08e-32 108
MS.gene50682.t1 MTR_5g008350 63.750 80 23 1 1 80 1 74 9.00e-32 106
MS.gene50682.t1 MTR_4g072690 73.529 68 18 0 24 91 18 85 1.58e-31 106
MS.gene50682.t1 MTR_4g072450 73.529 68 18 0 24 91 18 85 4.38e-31 105
MS.gene50682.t1 MTR_4g072770 71.212 66 19 0 26 91 15 80 1.35e-30 103
MS.gene50682.t1 MTR_4g072750 68.000 75 21 2 1 73 1 74 3.05e-30 102
MS.gene50682.t1 MTR_3g117640 67.647 68 21 1 26 92 34 101 8.02e-30 102
MS.gene50682.t1 MTR_3g110035 61.538 78 29 1 16 93 62 138 3.17e-29 102
MS.gene50682.t1 MTR_4g072280 60.000 75 30 0 1 75 1 75 6.65e-29 99.4
MS.gene50682.t1 MTR_3g113310 59.701 67 26 1 24 90 40 105 4.30e-26 93.2
MS.gene50682.t1 MTR_6g077850 46.591 88 46 1 4 91 13 99 9.53e-26 92.0
MS.gene50682.t1 MTR_3g117610 63.077 65 23 1 24 88 43 106 3.42e-25 90.9
MS.gene50682.t1 MTR_4g072190 54.321 81 33 2 10 90 23 99 6.12e-25 90.1
MS.gene50682.t1 MTR_8g461400 51.613 93 18 2 1 93 1 66 8.93e-25 88.6
MS.gene50682.t1 MTR_4g072930 49.412 85 39 1 11 91 26 110 1.23e-23 87.0
MS.gene50682.t1 MTR_5g021820 56.061 66 28 1 25 90 39 103 7.25e-22 82.4
MS.gene50682.t1 MTR_8g076040 57.812 64 26 1 25 88 40 102 1.36e-21 81.6
MS.gene50682.t1 MTR_4g072840 47.826 92 15 3 1 91 1 60 1.03e-18 73.2
MS.gene50682.t1 MTR_4g005310 49.296 71 32 2 17 86 56 123 2.07e-16 69.7
MS.gene50682.t1 MTR_2g043960 51.613 62 29 1 25 86 75 135 3.40e-16 69.3
MS.gene50682.t1 MTR_4g124750 50.000 64 31 1 25 88 68 130 4.53e-16 68.9
MS.gene50682.t1 MTR_1g024085 50.000 70 31 2 15 84 29 94 9.13e-16 67.8
MS.gene50682.t1 MTR_4g025830 45.588 68 33 2 26 90 79 145 1.58e-15 67.8
MS.gene50682.t1 MTR_7g118010 45.588 68 34 2 26 91 23 89 3.44e-15 65.5
MS.gene50682.t1 MTR_1g061570 40.909 88 48 2 5 92 1 84 7.88e-15 65.1
MS.gene50682.t1 MTR_3g092220 44.286 70 36 2 17 84 24 92 8.36e-15 64.7
MS.gene50682.t1 MTR_1g009150 52.459 61 28 1 26 86 71 130 9.60e-15 65.9
MS.gene50682.t1 MTR_1g063950 46.377 69 36 1 15 83 37 104 1.46e-14 64.3
MS.gene50682.t1 MTR_1g094750 48.387 62 31 1 25 86 49 109 1.54e-14 63.9
MS.gene50682.t1 MTR_0388s0020 40.541 74 40 2 20 90 69 141 2.32e-14 64.3
MS.gene50682.t1 MTR_8g026730 42.647 68 36 2 26 91 27 93 8.58e-14 62.0
MS.gene50682.t1 MTR_8g461210 40.659 91 50 3 4 92 14 102 1.59e-13 61.2
MS.gene50682.t1 MTR_4g005320 47.541 61 31 1 26 86 70 129 1.73e-13 62.4
MS.gene50682.t1 MTR_3g109160 42.169 83 47 1 10 92 53 134 2.30e-13 62.0
MS.gene50682.t1 MTR_3g105900 65.854 41 14 0 25 65 1171 1211 2.41e-13 64.3
MS.gene50682.t1 MTR_4g072160 46.875 64 33 1 23 86 34 96 4.58e-13 60.8
MS.gene50682.t1 MTR_1g059770 40.000 65 38 1 26 90 49 112 5.60e-13 60.5
MS.gene50682.t1 MTR_7g101740 46.875 64 33 1 25 88 39 101 2.22e-12 58.5
MS.gene50682.t1 MTR_3g098970 33.333 81 52 2 13 93 41 119 3.62e-12 58.5
MS.gene50682.t1 MTR_2g095430 39.759 83 43 3 10 86 27 108 8.94e-12 57.4
MS.gene50682.t1 MTR_3g097120 40.506 79 38 2 21 91 4 81 1.15e-11 56.2
MS.gene50682.t1 MTR_8g101520 35.632 87 51 2 9 91 29 114 1.28e-11 57.4
MS.gene50682.t1 MTR_7g104940 38.710 62 37 1 29 90 53 113 5.31e-11 55.1
MS.gene50682.t1 MTR_8g096440 38.961 77 44 2 7 83 28 101 5.54e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50682.t1 AT5G18020 69.737 76 22 1 17 91 15 90 8.49e-35 114
MS.gene50682.t1 AT5G18060 69.737 76 22 1 17 91 15 90 1.02e-34 114
MS.gene50682.t1 AT5G18080 68.421 76 23 1 17 91 15 90 3.39e-34 113
MS.gene50682.t1 AT4G38840 62.353 85 31 1 8 91 15 99 4.45e-34 113
MS.gene50682.t1 AT5G18050 67.105 76 24 1 17 91 15 90 7.71e-34 112
MS.gene50682.t1 AT5G18030 70.270 74 21 1 19 91 15 88 2.41e-33 110
MS.gene50682.t1 AT2G21200 70.423 71 20 1 21 90 16 86 1.26e-32 108
MS.gene50682.t1 AT5G18010 65.789 76 25 1 17 91 15 90 1.54e-32 108
MS.gene50682.t1 AT3G03840 67.123 73 22 1 22 92 23 95 7.45e-32 107
MS.gene50682.t1 AT4G38825 68.056 72 22 1 21 91 18 89 1.48e-31 106
MS.gene50682.t1 AT3G03850 70.588 68 18 1 27 92 26 93 1.04e-30 104
MS.gene50682.t1 AT2G21210 49.474 95 44 2 1 91 1 95 2.53e-30 103
MS.gene50682.t1 AT3G03820 54.255 94 37 2 2 92 6 96 5.43e-30 102
MS.gene50682.t1 AT4G34770 60.241 83 31 1 12 92 21 103 8.22e-30 102
MS.gene50682.t1 AT4G38850 58.621 87 23 2 8 91 13 89 1.69e-29 101
MS.gene50682.t1 AT2G21210 49.474 95 44 2 1 91 68 162 1.99e-29 103
MS.gene50682.t1 AT3G03830 55.682 88 32 2 11 91 5 92 1.30e-28 99.0
MS.gene50682.t1 AT4G34800 53.488 86 32 2 1 83 1 81 1.03e-27 97.1
MS.gene50682.t1 AT4G34810 54.444 90 33 3 9 90 28 117 4.83e-27 95.9
MS.gene50682.t1 AT4G13790 53.425 73 32 1 20 90 19 91 1.29e-25 91.7
MS.gene50682.t1 AT4G38860 58.824 68 28 0 24 91 38 105 1.26e-24 89.4
MS.gene50682.t1 AT2G21220 51.190 84 37 2 10 90 21 103 2.25e-24 88.6
MS.gene50682.t1 AT1G75580 62.687 67 24 1 24 90 42 107 2.41e-24 88.6
MS.gene50682.t1 AT4G34760 59.701 67 26 1 24 90 41 106 3.75e-24 88.2
MS.gene50682.t1 AT4G34780 48.387 93 42 2 4 90 3 95 1.47e-23 86.7
MS.gene50682.t1 AT4G34790 56.923 65 26 1 26 88 39 103 3.13e-22 83.6
MS.gene50682.t1 AT2G16580 56.923 65 27 1 24 88 42 105 7.74e-21 79.7
MS.gene50682.t1 AT1G19830 54.286 70 31 1 21 90 43 111 7.79e-21 80.1
MS.gene50682.t1 AT4G36110 56.250 64 27 1 25 88 39 101 2.69e-20 78.2
MS.gene50682.t1 AT2G18010 54.688 64 28 1 25 88 47 109 3.27e-19 75.9
MS.gene50682.t1 AT5G66260 45.455 88 42 2 4 91 17 98 1.06e-18 74.3
MS.gene50682.t1 AT3G20220 47.368 76 38 2 15 89 36 110 1.71e-18 74.3
MS.gene50682.t1 AT3G43120 50.000 62 30 1 25 86 78 138 1.72e-16 70.1
MS.gene50682.t1 AT5G20810 51.613 62 29 1 25 86 78 138 7.95e-16 68.6
MS.gene50682.t1 AT3G51200 51.562 64 29 2 21 83 34 96 1.23e-15 66.6
MS.gene50682.t1 AT2G46690 40.476 84 45 3 13 92 10 92 1.25e-15 67.0
MS.gene50682.t1 AT1G75590 44.595 74 40 1 11 84 27 99 1.69e-15 67.4
MS.gene50682.t1 AT5G20810 47.826 69 35 1 18 86 71 138 1.80e-15 68.2
MS.gene50682.t1 AT2G45210 43.836 73 37 2 21 90 74 145 4.62e-15 66.6
MS.gene50682.t1 AT5G10990 44.595 74 39 2 11 84 27 98 7.79e-15 65.5
MS.gene50682.t1 AT4G34750 43.750 64 35 1 25 88 36 98 1.10e-14 65.1
MS.gene50682.t1 AT4G34750 43.750 64 35 1 25 88 36 98 1.10e-14 65.1
MS.gene50682.t1 AT1G19840 48.529 68 32 2 19 84 32 98 2.66e-14 64.3
MS.gene50682.t1 AT3G61900 42.857 70 36 2 25 91 29 97 4.82e-14 63.2
MS.gene50682.t1 AT3G60690 43.836 73 37 2 22 91 84 155 5.06e-14 63.9
MS.gene50682.t1 AT4G31320 52.542 59 27 1 26 84 80 137 5.48e-14 64.3
MS.gene50682.t1 AT2G24400 52.459 61 28 1 26 86 64 123 1.44e-13 62.8
MS.gene50682.t1 AT4G00880 46.377 69 34 2 25 91 27 94 3.42e-13 60.8
MS.gene50682.t1 AT2G37030 49.153 59 29 1 25 83 48 105 1.18e-12 59.3
MS.gene50682.t1 AT5G53590 32.292 96 59 2 1 91 21 115 1.90e-12 59.3
MS.gene50682.t1 AT4G12410 42.647 68 35 2 26 90 76 142 3.36e-12 58.9
MS.gene50682.t1 AT2G36210 39.726 73 44 0 16 88 44 116 3.95e-12 58.2
MS.gene50682.t1 AT4G09530 42.254 71 35 3 17 84 22 89 6.22e-12 57.0
MS.gene50682.t1 AT3G12830 36.842 76 47 1 16 91 40 114 1.82e-11 56.6
MS.gene50682.t1 AT4G22620 38.889 72 40 2 22 90 75 145 1.92e-11 57.0
MS.gene50682.t1 AT1G56150 40.909 66 38 1 26 91 38 102 9.60e-11 54.3

Find 25 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCAATTTGAGGAAGAGTT+TGG 0.296654 4.3:-33539058 MS.gene50682:CDS
GGTTGGTTCAAGTATGATAT+TGG 0.299968 4.3:+33539100 None:intergenic
GTTGGTTCAAGTATGATATT+GGG 0.382183 4.3:+33539101 None:intergenic
CATATGACATCTCGCTTGAA+TGG 0.396465 4.3:-33538980 MS.gene50682:CDS
CTCAATAAGTCTTGAAATGA+TGG 0.413980 4.3:+33539079 None:intergenic
AGACTTATTGAGTCAATTTG+AGG 0.438566 4.3:-33539068 MS.gene50682:CDS
CCACAGCTTTCGAAGCTGAT+CGG 0.512188 4.3:+33539182 None:intergenic
GGATATCTTGCAGTATATGT+TGG 0.514243 4.3:-33539148 MS.gene50682:CDS
ATAAGTCTTGAAATGATGGT+TGG 0.520706 4.3:+33539083 None:intergenic
CATATGTTGAAATACATCTT+CGG 0.523682 4.3:+33538997 None:intergenic
TTTCGCTGGTATCATCAGAA+AGG 0.541055 4.3:-33539221 MS.gene50682:CDS
TACATCTTCGGTGCAAGGAA+TGG 0.541149 4.3:+33539009 None:intergenic
GAAAGCTGTGGAGGTGCCAA+AGG 0.546881 4.3:-33539170 MS.gene50682:CDS
TATACTGCAAGATATCCCTT+TGG 0.554191 4.3:+33539154 None:intergenic
AGGAATGGTGAGGCCACCCA+TGG 0.554354 4.3:+33539024 None:intergenic
TGAAATACATCTTCGGTGCA+AGG 0.561917 4.3:+33539004 None:intergenic
GTTTGGATATGATCATCCCA+TGG 0.570301 4.3:-33539041 MS.gene50682:CDS
AAAGCTGTGGAGGTGCCAAA+GGG 0.597783 4.3:-33539169 MS.gene50682:CDS
GGATATGATCATCCCATGGG+TGG 0.600402 4.3:-33539037 MS.gene50682:CDS
CCGATCAGCTTCGAAAGCTG+TGG 0.601708 4.3:-33539182 MS.gene50682:CDS
ATCAGCTTCGAAAGCTGTGG+AGG 0.613946 4.3:-33539179 MS.gene50682:CDS
GGAATGGTGAGGCCACCCAT+GGG 0.636587 4.3:+33539025 None:intergenic
TTTGGATATGATCATCCCAT+GGG 0.641263 4.3:-33539040 MS.gene50682:CDS
CTTCGGTGCAAGGAATGGTG+AGG 0.671810 4.3:+33539014 None:intergenic
ATGTTGGAGAGAAACAAAAG+CGG 0.758569 4.3:-33539132 MS.gene50682:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CATATGTTGAAATACATCTT+CGG + chr4.3:33539211-33539230 None:intergenic 25.0%
AGACTTATTGAGTCAATTTG+AGG - chr4.3:33539137-33539156 MS.gene50682:CDS 30.0%
ATAAGTCTTGAAATGATGGT+TGG + chr4.3:33539125-33539144 None:intergenic 30.0%
CTCAATAAGTCTTGAAATGA+TGG + chr4.3:33539129-33539148 None:intergenic 30.0%
! GTTGGTTCAAGTATGATATT+GGG + chr4.3:33539107-33539126 None:intergenic 30.0%
AGTCAATTTGAGGAAGAGTT+TGG - chr4.3:33539147-33539166 MS.gene50682:CDS 35.0%
ATGTTGGAGAGAAACAAAAG+CGG - chr4.3:33539073-33539092 MS.gene50682:CDS 35.0%
GGATATCTTGCAGTATATGT+TGG - chr4.3:33539057-33539076 MS.gene50682:CDS 35.0%
TATACTGCAAGATATCCCTT+TGG + chr4.3:33539054-33539073 None:intergenic 35.0%
TTTGGATATGATCATCCCAT+GGG - chr4.3:33539165-33539184 MS.gene50682:CDS 35.0%
! GGTTGGTTCAAGTATGATAT+TGG + chr4.3:33539108-33539127 None:intergenic 35.0%
CATATGACATCTCGCTTGAA+TGG - chr4.3:33539225-33539244 MS.gene50682:CDS 40.0%
GTTTGGATATGATCATCCCA+TGG - chr4.3:33539164-33539183 MS.gene50682:CDS 40.0%
TTTCGCTGGTATCATCAGAA+AGG - chr4.3:33538984-33539003 MS.gene50682:CDS 40.0%
! TGAAATACATCTTCGGTGCA+AGG + chr4.3:33539204-33539223 None:intergenic 40.0%
! TACATCTTCGGTGCAAGGAA+TGG + chr4.3:33539199-33539218 None:intergenic 45.0%
ATCAGCTTCGAAAGCTGTGG+AGG - chr4.3:33539026-33539045 MS.gene50682:CDS 50.0%
CCACAGCTTTCGAAGCTGAT+CGG + chr4.3:33539026-33539045 None:intergenic 50.0%
GGATATGATCATCCCATGGG+TGG - chr4.3:33539168-33539187 MS.gene50682:CDS 50.0%
!! AAAGCTGTGGAGGTGCCAAA+GGG - chr4.3:33539036-33539055 MS.gene50682:CDS 50.0%
CCGATCAGCTTCGAAAGCTG+TGG - chr4.3:33539023-33539042 MS.gene50682:CDS 55.0%
! CTTCGGTGCAAGGAATGGTG+AGG + chr4.3:33539194-33539213 None:intergenic 55.0%
!! GAAAGCTGTGGAGGTGCCAA+AGG - chr4.3:33539035-33539054 MS.gene50682:CDS 55.0%
AGGAATGGTGAGGCCACCCA+TGG + chr4.3:33539184-33539203 None:intergenic 60.0%
GGAATGGTGAGGCCACCCAT+GGG + chr4.3:33539183-33539202 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 33538973 33539254 33538973 ID=MS.gene50682
chr4.3 mRNA 33538973 33539254 33538973 ID=MS.gene50682.t1;Parent=MS.gene50682
chr4.3 exon 33538973 33539254 33538973 ID=MS.gene50682.t1.exon1;Parent=MS.gene50682.t1
chr4.3 CDS 33538973 33539254 33538973 ID=cds.MS.gene50682.t1;Parent=MS.gene50682.t1
Gene Sequence

>MS.gene50682

ATGGGTTTTCGTTTCGCTGGTATCATCAGAAAGGCATCATTTTCTGCAAACCGATCAGCTTCGAAAGCTGTGGAGGTGCCAAAGGGATATCTTGCAGTATATGTTGGAGAGAAACAAAAGCGGTATGTGATCCCAATATCATACTTGAACCAACCATCATTTCAAGACTTATTGAGTCAATTTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACCATTCCTTGCACCGAAGATGTATTTCAACATATGACATCTCGCTTGAATGGACTATGA
Protein sequence

>MS.gene50682.t1

MGFRFAGIIRKASFSANRSASKAVEVPKGYLAVYVGEKQKRYVIPISYLNQPSFQDLLSQFEEEFGYDHPMGGLTIPCTEDVFQHMTSRLNGL