AlfalfaGEDB | MS.gene53366

M. sativa cultivar XinJiangDaYe / MS.gene53366

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53366.t1	AFK43109.1	89.8	98	7	1	1	95	1	98	4.80E-41	176.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53366.t1	I3SS67	89.8	98	7	1	1	95	1	98	3.5e-41	176.8

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene53366	-0.823538	1.31E-53	-1.69E-46
MS.gene049217	MS.gene53366	-0.808902	2.46E-50	-1.69E-46
MS.gene049222	MS.gene53366	-0.843462	1.38E-58	-1.69E-46
MS.gene049285	MS.gene53366	-0.803657	3.14E-49	-1.69E-46
MS.gene049298	MS.gene53366	0.816922	4.31E-52	-1.69E-46
MS.gene049320	MS.gene53366	-0.801594	8.37E-49	-1.69E-46
MS.gene04939	MS.gene53366	-0.801147	1.03E-48	-1.69E-46
MS.gene049633	MS.gene53366	-0.858581	7.47E-63	-1.69E-46
MS.gene050165	MS.gene53366	-0.805535	1.27E-49	-1.69E-46
MS.gene050170	MS.gene53366	-0.830467	2.89E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53366.t1	MTR_8g087660	97.222	72	2	0	24	95	1	72	4.73e-47	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAGATCTCATAAAC+GGG	0.490121	4.1:+13125368	None:intergenic
AAGAAGAGTAGCTTGGAGTT+GGG	0.345283	4.1:+13125630	None:intergenic
ACTGGTGCACCAGCTGCACT+TGG	0.490099	4.1:+13125467	None:intergenic
AGAAGAGTAGCTTGGAGTTG+GGG	0.506919	4.1:+13125631	None:intergenic
AGACCCATCCTTATCAACTG+TGG	0.653046	4.1:-13125525	MS.gene53366:CDS
AGATAGATCTCATAAACGGG+TGG	0.606925	4.1:+13125371	None:intergenic
AGCTTTAAGGTTGCCTCACC+AGG	0.416451	4.1:-13125409	MS.gene53366:CDS
AGTATCATCAAGATCTTGAC+TGG	0.560635	4.1:+13125449	None:intergenic
CAAATGGTGGTGGCTGAAGA+TGG	0.538267	4.1:-13125579	MS.gene53366:CDS
CCAACTCTCCACAGTTGATA+AGG	0.434883	4.1:+13125517	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTATCATCAAGATCTTGAC+TGG	+	chr4.1:13125579-13125598	None:intergenic	35.0%
AAGAAGAGTAGCTTGGAGTT+GGG	+	chr4.1:13125398-13125417	None:intergenic	40.0%
GATGATGAAGAAGAGTAGCT+TGG	+	chr4.1:13125405-13125424	None:intergenic	40.0%
AGAAGAGTAGCTTGGAGTTG+GGG	+	chr4.1:13125397-13125416	None:intergenic	45.0%
AGACCCATCCTTATCAACTG+TGG	-	chr4.1:13125500-13125519	MS.gene53366:CDS	45.0%
CCACCACCATTTGACAAACA+AGG	+	chr4.1:13125439-13125458	None:intergenic	45.0%
CCTTATCAACTGTGGAGAGT+TGG	-	chr4.1:13125508-13125527	MS.gene53366:CDS	45.0%
GAAGAAGAGTAGCTTGGAGT+TGG	+	chr4.1:13125399-13125418	None:intergenic	45.0%
TGGCTGAAGATGGTTCATCA+AGG	-	chr4.1:13125456-13125475	MS.gene53366:CDS	45.0%
CCACAAGAGAAAACCTGGTG+AGG	+	chr4.1:13125632-13125651	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	13125380	13125667	13125380	ID=MS.gene53366
chr4.1	mRNA	13125380	13125667	13125380	ID=MS.gene53366.t1;Parent=MS.gene53366
chr4.1	exon	13125380	13125667	13125380	ID=MS.gene53366.t1.exon1;Parent=MS.gene53366.t1
chr4.1	CDS	13125380	13125667	13125380	ID=cds.MS.gene53366.t1;Parent=MS.gene53366.t1

Gene Sequence	>MS.gene53366 ATGGAGTTCTCTATCCCCAACTCCAAGCTACTCTTCTTCATCATCTTCATCTCTCTCCTTGTTTGTCAAATGGTGGTGGCTGAAGATGGTTCATCAAGGAAACCCTTTTCAGCCAGCAAAAGACCCATCCTTATCAACTGTGGAGAGTTGGTTTCAAAGTCAAAGTGTTCTCAGAACTCCAAGTGCAGCTGGTGCACCAGTCAAGATCTTGATGATACTTGCTTCTCTAAATCTGAAGCTTTAAGGTTGCCTCACCAGGTTTTCTCTTGTGGGCCCACCCGTTTATGA
Protein sequence	>MS.gene53366.t1 MEFSIPNSKLLFFIIFISLLVCQMVVAEDGSSRKPFSASKRPILINCGELVSKSKCSQNSKCSWCTSQDLDDTCFSKSEALRLPHQVFSCGPTRL