AlfalfaGEDB | MS.gene73164

M. sativa cultivar XinJiangDaYe / MS.gene73164

KEGG: K13457
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73164.t1	XP_003600282.1	82.1	906	153	3	1	905	1	898	0.00E+00	1445.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73164.t1	Q39214	27.4	908	588	18	31	905	23	892	4.3e-87	324.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73164.t1	G7J232	82.1	906	153	3	1	905	1	898	0.0e+00	1445.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene73164	-0.831245	1.86E-55	-1.69E-46
MS.gene049222	MS.gene73164	-0.809506	1.83E-50	-1.69E-46
MS.gene049285	MS.gene73164	-0.800848	1.19E-48	-1.69E-46
MS.gene049320	MS.gene73164	-0.817552	3.11E-52	-1.69E-46
MS.gene049549	MS.gene73164	0.819452	1.15E-52	-1.69E-46
MS.gene049611	MS.gene73164	0.818034	2.42E-52	-1.69E-46
MS.gene049633	MS.gene73164	-0.813428	2.57E-51	-1.69E-46
MS.gene049634	MS.gene73164	0.825227	5.26E-54	-1.69E-46
MS.gene050082	MS.gene73164	0.808306	3.31E-50	-1.69E-46
MS.gene050096	MS.gene73164	0.807441	5.05E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene73164.t1	MTR_3g056380	84.123	907	135	3	1	906	1	899	1521
MS.gene73164.t1	MTR_3g056200	78.304	908	185	8	2	906	4	902	1359
MS.gene73164.t1	MTR_3g056620	75.027	925	211	4	1	906	1	924	1346
MS.gene73164.t1	MTR_3g056190	74.264	917	222	7	1	905	1	915	1293
MS.gene73164.t1	MTR_3g056320	73.989	915	224	10	1	906	1	910	1264
MS.gene73164.t1	MTR_3g056310	72.418	910	235	6	2	905	4	903	1263
MS.gene73164.t1	MTR_3g056410	63.492	882	295	10	31	907	1	860	1057
MS.gene73164.t1	MTR_3g056360	63.277	885	298	10	28	907	7	869	1054
MS.gene73164.t1	MTR_3g069210	53.493	916	378	17	1	903	1	881	866
MS.gene73164.t1	MTR_3g056585	53.478	920	381	19	1	906	1	887	857

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73164.t1	AT3G07040	28.930	916	584	18	21	905	13	892	1.24e-112	368
MS.gene73164.t1	AT3G50950	28.224	822	512	25	10	801	2	775	1.38e-72	256
MS.gene73164.t1	AT3G50950	28.224	822	512	25	10	801	2	775	1.38e-72	256
MS.gene73164.t1	AT1G50180	30.854	632	381	16	34	641	26	625	5.08e-71	252
MS.gene73164.t1	AT3G46530	28.136	853	504	28	24	821	17	815	1.29e-68	245
MS.gene73164.t1	AT3G46730	31.124	694	420	26	24	693	17	676	3.02e-68	244
MS.gene73164.t1	AT1G59780	25.803	934	585	29	10	906	2	864	3.12e-63	230
MS.gene73164.t1	AT1G58400	24.890	912	620	25	10	892	2	877	3.86e-63	230
MS.gene73164.t1	AT1G58400	24.890	912	620	25	10	892	2	877	3.86e-63	230
MS.gene73164.t1	AT5G48620	26.333	919	597	26	21	905	13	885	4.24e-63	230

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Find 165 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGACTTGAGGTTGTA+AGG	0.453260	3.4:-51454529	None:intergenic
AAACTACAAATTAGTGGAGT+CGG	0.537804	3.4:+51455462	MS.gene73164:CDS
AAACTGATTAATTGGCTGGT+AGG	0.518848	3.4:+51453797	MS.gene73164:CDS
AAAGAAGGCGTTCCATGACT+TGG	0.462630	3.4:+51454294	MS.gene73164:CDS
AAAGATTTAAGTGATGTATT+TGG	0.265960	3.4:-51454940	None:intergenic
AAATATAAATGTAGATTTAG+AGG	0.388130	3.4:+51454459	MS.gene73164:CDS
AAATGGGTTTATTTAAACGA+TGG	0.545651	3.4:+51455294	MS.gene73164:CDS
AACAATATTTCTATATTGTA+TGG	0.362147	3.4:-51453956	None:intergenic
AACACGTTGAAGCCTAGGTG+GGG	0.571458	3.4:-51455520	None:intergenic
AACACTTTGATTGTCATGGA+TGG	0.494232	3.4:+51453918	MS.gene73164:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTACAAATTAGTGGAGT+CGG	+	chr3.4:51455462-51455481	MS.gene73164:CDS	30.0%
AATACAAGAAACATGACTTG+AGG	-	chr3.4:51454540-51454559	None:intergenic	30.0%
AATCAATAAGATGCAACAAC+TGG	+	chr3.4:51455437-51455456	MS.gene73164:CDS	30.0%
AATGATCCTTGAGAAATATG+AGG	+	chr3.4:51454774-51454793	MS.gene73164:CDS	30.0%
ACATACGATTGCCTAAAAAA+TGG	-	chr3.4:51455221-51455240	None:intergenic	30.0%
ACCTGAAATTCCTAATGATT+TGG	+	chr3.4:51455026-51455045	MS.gene73164:CDS	30.0%
CAAGAGAGAAACTGATTAAT+TGG	+	chr3.4:51453789-51453808	MS.gene73164:CDS	30.0%
CAATTAATCAGTTTCTCTCT+TGG	-	chr3.4:51453791-51453810	None:intergenic	30.0%
CCTGAAATTCCTAATGATTT+GGG	+	chr3.4:51455027-51455046	MS.gene73164:CDS	30.0%
CTATATAGTTCGTTCAAAGA+CGG	+	chr3.4:51454579-51454598	MS.gene73164:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	51453233	51455974	51453233	ID=MS.gene73164
chr3.4	mRNA	51453233	51455974	51453233	ID=MS.gene73164.t1;Parent=MS.gene73164
chr3.4	exon	51453233	51455974	51453233	ID=MS.gene73164.t1.exon1;Parent=MS.gene73164.t1
chr3.4	CDS	51453233	51455974	51453233	ID=cds.MS.gene73164.t1;Parent=MS.gene73164.t1

Gene Sequence

>MS.gene73164

ATGTGTGACACTGCACTTTCCTGTGCTCTTGATCAGTTGCTTCCACTAGCCCGTGATCACTTGCTTCCACTCTTGAAGGAAGCATTCAACATGATTAGGGGTGTCCCAAAAGAAATTGCAGACTTGAAAGATGAACTAGAAAGCATTGAAGACTACATCAACGATGCGGATAGAAGAGCTGATGATGTAGAAGACAAGAAAATCAAAGACATGATCAAGCAGATGATAGAAGCATCTTTTCACATAGAAGATGTCATTGATGATTATATCTTCCTTGAGGAACAACAATCTTCTGATCCTGGATGTCCTGCTGGAGCTGTTGACTTGGTGAAAACTAAGATTCTTCGTCTCCAAATTGCTTACAAGATTCAGAACATCAAATCCCGAATTAGAGAAATAAAAGAAACAAGTGAAAAAGATCATGGCTTCCACATCCAATCTTCTTCGGATAAACCATCCAGTAGTTCTGCAACAAACAGAAATGCCTCATTATTGCAGAACCTTCGAGATGCTCCATTTTATATGGATGAAGCTGATGTTGTGGGATTTGAAGAGCCAAGAGAGAAACTGATTAATTGGCTGGTAGGGGGAAGAGCTGATCGCACAGTTGTCTCCATTGTTGGAATGGGAGGACTGGGGAAAACCACTCTAGCCAAGAAAGTTTTTGACAACCAAAAGGTCGTTAAACACTTTGATTGTCATGGATGGATCACAGTGTCTCGACCATACAATATAGAAATATTGTTGAGGGAAATTTTGCTCGAGATTTACAAACAACAAGGGAAAGATCCTCCTCAAAGTCTCCATCAAATGGATCGAAAGCCATTAGTTGATGAAGTGAGAAACTACTTGCAAGGAAAAAGGTACGTTGTAGTGTTGGATGATGTATGGGATTCACATTTTTGGTATGATATTGAATTTGCTATGATTGATAACAAAAATGGTAGTAAGATATTAATCACAACAAGAAACAAGGATGTTGCAGATGCTTGTAAGAAATCTTTTGGTAAAGTGCATGAGCTGGAACGTTTATCTGAAGAAAAGTCGTTGGAATTGTTTCAAAAGAAGGCGTTCCATGACTTGGACGGATTTTGTCCAAAAAATCTTTTTGATATATCTTCCAAAATTGTTGAAAAATGCAAAGGATTACCTCTAACAATTGTTGTCACCGGTGATATTTTATCTCGCAAAGATAGAAATCCAATTGAATGGTCCAAGTTTAGTGAAAATATAAATGTAGATTTAGAGGAATATTCCACAATAAGAAAAATTTTAGGATTTAGTTACCATGATTTACCTTACAACCTCAAGTCATGTTTCTTGTATTTTGGATTATATCCTGAAGACTATATAGTTCGTTCAAAGACGGTGACTCGCCAATGGATTGCTGAAGGGTTTGTGAAAGAAGACAGGGGAAGGACATTTGAAGAGGTTGCAGAAGGATATTTAGTAGAGTTGATCCATAGAAGTTTGGTGCAAGTAGTTTCAATAAGTATTGATGGAAGAGTAAAAAGTTGTCGTGTTCATGATCTAGTGCATGCAATGATCCTTGAGAAATATGAGGATTTAAGTTTTTGCAAGAATATTACTGGGGACAAACAATTGTCTTTAACCGGAATGATTCGACGCCTGTCAATAGCAACGAGTTCTGATAATTTAATGAAAAGTATTGAAAACTCACATGTTCGATCACTGCTTGTTTTCACACCAAATACATCACTTAAATCTTTTGTAAGGACAATCCCTACAAAATACAGGCGGTTGAAGGTGCTTGCTTTGATGCATGAGGAATTACCTGAAATTCCTAATGATTTGGGAAGTTTTAACCACTTGAAATATTTTGAGTTCCGGATGATTGGAGGAAGAGATTTTGGAATTCCAAAATCCATTGGCATGCTCGTGAACCTAGAGACTTTGGATTTAAGAAATAGAAGGACTGAAAATCGTAATATGCCAAAGGAGATTTGCATGCTTAGAAAGCTACGCCATTTTTTAGGCAATCGTATGTCTTTGATTCAGTTGAAGGATGGTATTGGAGGCATGACATCTCTACAAACTCTAAAATGGGTTTATTTAAACGATGGTGAAGATGAAAATGATAATAGAGTGGTAGAGCTAATCGAAGAGCTAGGAAAGCTAAATCAGCTAAGGGAATTGGTTTTGCTCGGTGTTAGGAGTAAATATATGAGTGCTATATCTTCCTCAATCAATAAGATGCAACAACTGGAGAAACTACAAATTAGTGGAGTCGGACATGAGACATTCATTGATCTGGATGTGAAGTCACCCCCACCTAGGCTTCAACGTGTTAAATTTTGTGGACATTTTAAGAAATTTCCTAAGTGGATTTCAAAACTCCAGAATCTTGTTAAGCTGAGAGTGATGCTTTCGAAGCAAGGGAATGATGCAATGAAACTACTCCAAAGTATGCCAAACTTGTTGTCCCTCCATATCACTGGTAGTCATGATTATGAAGACAAATTGGAAAGCTTGCATTTTCAAGATGGATGGTTTATGAATTTGAAGGAACTAACTATTTTTAGATTGGATAACTTGAGTTACATCCTTATTGACGAAGGTGCATTGGGCTCTCTGAAAAAGCTCAATTTATACTACACCCCCCGACTCAAAATGTTACCAACTGGCATTCAATACTTACACAACCTTGAAGTTCTCCGTTGCAAGCCTATGAGCGTGGAATTTATGCAGAGCATTGGATTTTCAAGCAAGTGCCCTTTGTAG

Protein sequence

>MS.gene73164.t1

MCDTALSCALDQLLPLARDHLLPLLKEAFNMIRGVPKEIADLKDELESIEDYINDADRRADDVEDKKIKDMIKQMIEASFHIEDVIDDYIFLEEQQSSDPGCPAGAVDLVKTKILRLQIAYKIQNIKSRIREIKETSEKDHGFHIQSSSDKPSSSSATNRNASLLQNLRDAPFYMDEADVVGFEEPREKLINWLVGGRADRTVVSIVGMGGLGKTTLAKKVFDNQKVVKHFDCHGWITVSRPYNIEILLREILLEIYKQQGKDPPQSLHQMDRKPLVDEVRNYLQGKRYVVVLDDVWDSHFWYDIEFAMIDNKNGSKILITTRNKDVADACKKSFGKVHELERLSEEKSLELFQKKAFHDLDGFCPKNLFDISSKIVEKCKGLPLTIVVTGDILSRKDRNPIEWSKFSENINVDLEEYSTIRKILGFSYHDLPYNLKSCFLYFGLYPEDYIVRSKTVTRQWIAEGFVKEDRGRTFEEVAEGYLVELIHRSLVQVVSISIDGRVKSCRVHDLVHAMILEKYEDLSFCKNITGDKQLSLTGMIRRLSIATSSDNLMKSIENSHVRSLLVFTPNTSLKSFVRTIPTKYRRLKVLALMHEELPEIPNDLGSFNHLKYFEFRMIGGRDFGIPKSIGMLVNLETLDLRNRRTENRNMPKEICMLRKLRHFLGNRMSLIQLKDGIGGMTSLQTLKWVYLNDGEDENDNRVVELIEELGKLNQLRELVLLGVRSKYMSAISSSINKMQQLEKLQISGVGHETFIDLDVKSPPPRLQRVKFCGHFKKFPKWISKLQNLVKLRVMLSKQGNDAMKLLQSMPNLLSLHITGSHDYEDKLESLHFQDGWFMNLKELTIFRLDNLSYILIDEGALGSLKKLNLYYTPRLKMLPTGIQYLHNLEVLRCKPMSVEFMQSIGFSSKCPL