AlfalfaGEDB | MS.gene78478

M. sativa cultivar XinJiangDaYe / MS.gene78478

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78478.t1	XP_003609675.1	88.2	566	64	2	1	565	1	564	3.80E-271	943.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78478.t1	G7JLH7	88.2	566	64	2	1	565	1	564	2.8e-271	943.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049151	MS.gene78478	0.815379	9.53E-52	-1.69E-46
MS.gene049159	MS.gene78478	0.803429	3.50E-49	-1.69E-46
MS.gene049230	MS.gene78478	0.837486	5.05E-57	-1.69E-46
MS.gene049378	MS.gene78478	0.841722	4.00E-58	-1.69E-46
MS.gene049756	MS.gene78478	0.806474	8.08E-50	-1.69E-46
MS.gene050105	MS.gene78478	0.801755	7.75E-49	-1.69E-46
MS.gene050226	MS.gene78478	0.878401	2.89E-69	-1.69E-46
MS.gene050227	MS.gene78478	0.867705	1.12E-65	-1.69E-46
MS.gene050228	MS.gene78478	0.879474	1.21E-69	-1.69E-46
MS.gene050303	MS.gene78478	0.826399	2.77E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78478.t1	MTR_4g119920	90.283	566	52	2	1	565	1	564	0.0	992

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78478.t1	AT4G15820	31.862	521	274	16	49	560	10	458	4.44e-51	182

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Find 132 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGTTGTTGGCAT+CGG	0.581793	8.4:+12047509	None:intergenic
AAAACACCAAAGGGATTTCC+AGG	0.391921	8.4:-12048790	MS.gene78478:CDS
AAAAGGGAAGAGGAAGAGAA+TGG	0.434209	8.4:-12049027	MS.gene78478:CDS
AAACACCAAAGGGATTTCCA+GGG	0.684920	8.4:-12048789	MS.gene78478:CDS
AAACTTCACCTCTAAGGAAC+AGG	0.407016	8.4:-12047574	MS.gene78478:CDS
AAAGGGAAGAGGAAGAGAAT+GGG	0.392942	8.4:-12049026	MS.gene78478:CDS
AAATCCGTTGACGACGAGTC+TGG	0.325214	8.4:-12048616	MS.gene78478:CDS
AAATGATGGAAACACCAAAT+AGG	0.390911	8.4:-12048561	MS.gene78478:CDS
AAATGCTTCTGGTGTTCCAT+TGG	0.455535	8.4:-12048650	MS.gene78478:CDS
AACACCAAATAGGAAAACAA+AGG	0.654980	8.4:-12048551	MS.gene78478:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAAAGTTGTTGGCAT+CGG	+	chr8.4:12049215-12049234	None:intergenic	30.0%
AACACCAAATAGGAAAACAA+AGG	-	chr8.4:12048170-12048189	MS.gene78478:CDS	30.0%
AAGAAGTAATTAGCGAAGAT+AGG	-	chr8.4:12048454-12048473	MS.gene78478:intron	30.0%
ACGGTGGTATTTATTTGATT+GGG	-	chr8.4:12047461-12047480	MS.gene78478:CDS	30.0%
ATGGGAAATAGACATATGTT+TGG	-	chr8.4:12048994-12049013	MS.gene78478:CDS	30.0%
ATTTAAAAGCCCTTCAACTA+AGG	-	chr8.4:12047903-12047922	MS.gene78478:intron	30.0%
CACAAAGAGATATGATTTCA+TGG	+	chr8.4:12049068-12049087	None:intergenic	30.0%
GAAATCATATCTCTTTGTGA+AGG	-	chr8.4:12049069-12049088	MS.gene78478:CDS	30.0%
GAATAGGATTAAGAGTAACA+AGG	-	chr8.4:12047774-12047793	MS.gene78478:intron	30.0%
GATAATGTGGACAGTATAAA+TGG	-	chr8.4:12048610-12048629	MS.gene78478:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	12047097	12049646	12047097	ID=MS.gene78478
chr8.4	mRNA	12047097	12049646	12047097	ID=MS.gene78478.t1;Parent=MS.gene78478
chr8.4	exon	12048521	12049646	12048521	ID=MS.gene78478.t1.exon1;Parent=MS.gene78478.t1
chr8.4	CDS	12048521	12049646	12048521	ID=cds.MS.gene78478.t1;Parent=MS.gene78478.t1
chr8.4	exon	12048002	12048216	12048002	ID=MS.gene78478.t1.exon2;Parent=MS.gene78478.t1
chr8.4	CDS	12048002	12048216	12048002	ID=cds.MS.gene78478.t1;Parent=MS.gene78478.t1
chr8.4	exon	12047440	12047652	12047440	ID=MS.gene78478.t1.exon3;Parent=MS.gene78478.t1
chr8.4	CDS	12047440	12047652	12047440	ID=cds.MS.gene78478.t1;Parent=MS.gene78478.t1
chr8.4	exon	12047097	12047240	12047097	ID=MS.gene78478.t1.exon4;Parent=MS.gene78478.t1
chr8.4	CDS	12047097	12047240	12047097	ID=cds.MS.gene78478.t1;Parent=MS.gene78478.t1

Gene Sequence

>MS.gene78478

ATGGCGATTGCGCATTGCTTCTTCTTCCATGCGCCATTCACCACGAGACGAAAACCTTTGGTTATAGTCTCTTCAAAAACTGGTCAAAGGAAAAACTATCTGCGACCGAAAATTCTCAAAACCCTAACAAAACCCTCTCTATCCATTTCTCCCACTCTTCTACAACCACCAATACCGCAACCAATTCTATCTCCTCCTCAAGAACATGAACTCTGTGTTGATATCCCCGCCGACGAAATGCACGGAGAAGATATCGCTGGAGCTGTTGATGAGACTGGCGAATTTGAAGGATTACGAGTGTCCGTGGATACAGCAAAAGACAATCGTGTTTTTGGTAATGTTTCTGCTAAGGAGATTTTCAAATACGGTGGTATTTATTTGATTGGGGCTTTTGTGTTTCAAACTGTTCGTTACCTTTGGAATTCGAGAAATGAACATTCCAATGGGGATTTGGAAGTGAGTGAAAGGGAAAAGAGGAACATTTTGTTTGGTGGGAATGGGAAAACTGTGGAGGATCAATTAGTAGAAAGGAAAATTGAGGAAATTAAGTTAATGGCGAGGGAAGCTCGAAGAATTGAGTTATTGGAGAAGCAAGGTAAAAGGGAAGAGGAAGAGAATGGGGATCCTGAAATTGATGGTATTGAGAAAGAGATTGGTGAACGTTTGTTGAAGCTGAAGAATAGGATTAAGAGTAACAAGGATAGTTCAGCAGCATTGCGATTAAATGGTCGTGGAAATTCTGCTGGTGGTGGTGATATGAGTGTGAATCCGGGGAAAGAGGAATTAGTATTTAAGAAAAAGTCTAAATTTAAAAGCCCTTCAACTAAGGCTACAAAAACACCAAAGGGATTTCCAGGGACTCAAGATCATAGGGTTTCGTGTGTAAAACCTCAAGGTTATGGAAATCAGGTTACTGATCATGCAGGAATATTGGATGGGGATAAGCAAGTGAATCAACAAGATGTCACCCACAAAAATGCTTCTGGTGTTCCATTGGAAGAAAAAGGAAAATCCGTTGACGACGAGTCTGGGAAAGTTCAAAACGAAGGGGAGAATTTGGAAGAAATGATGGAAACACCAAATAGGAAAACAAAGGATGGAGTTACACCTAAGAGCATAAACAATGGTAATGTGATCAATGCATAACTTCTATTTATTTGAACTCGTATCAGTTATTGTCAATTGGAGTTGATTAGTTAAATATTTTGAATTGCCTTTTGGTTTTTTATGTATGCTGTTACTTTTGGCACCGTTGCTCGAAAATTATTATATATTGGAATTATGGCAGTAAAACTTCATTTAATTTGTAGTTTCAACTGTCAACTTTTGTTTTGGTGGATTTCCACGTGTTTGCTACAAGAAGTAATTAGCGAAGATAGGTTTGCTTGGGAGAAATTTAGCACAATTTGAGTTATTTTTTACATGTTTAGGTGGTTTCCCGGAGACTAGTATTGGGATGTCTTCACCTGAAGTAAGAGAATTGAGGACACAAAACTCCCAGGGTTTTGAAAAGGATAATGTGGACAGTATAAATGGCAGTTCAGGACAAGGATTAGCTAAAAAAAAATCAGCAGCTAACAAAGCCAAAGTTAAACAAGCAAAATCTAGGACTGATATTTGGTGGCTGAACCTACGTTATGTTCTAGTATGTGCAAGACAATTATTTTTGTTTTCCTATTTTTCAGTAGCATATCCATACAGGGACTTCTTAGGTATTTATTACCCGAAAATACTACTTCGTTGTTTATCCTTTCTTAAAGAACCTTGTGAAATTTTCTAGCTGTATCAAGTATAAGTATATAGTTCAATCCTTAAAACTTCAACAAAGTCAAATATCCTAGGTCGTAGGATCTTTTCTTGAAATACACTTGAGATTTCTTTTGTTTGCATTGGGTTTATGGGAAATAGACATATGTTTGGCGGATTAATCATAACATGTGTGCCCTACATGTATCCATTTGCTCCTGACCATGAAATCATATCTCTTTGTGAAGGTTATTCTCATGCAAAGAGGCTCCAACGAGGAAGGTCACAAAGGTCTCTATAGTTTAAACTTCACCTCTAAGGAACAGGAACAAAATGATGATTCCTATACCGTTGCTTTTGAGGATCAGGCCGATGCCAACAACTTTTGTTTTCTACTAGAATCCTATTTTGAAGATTTGGGTGACAATTTTAGTGCCAATGCAGTTCCCATGTCAATACAAGTAAGAATATCAGCTTTCACAGCAAATAAAAACTTATATGCAGTAACATATCTACTAAAATGTCTCATCGTTCTTGTTGAACCATGCACTTGTTAATTGAAATTGATAATTTTGTATAGATATTTCTAGTTAGCCAGTGTGTGTGTAATTTTATTTGGTATAGGCCATGTCTAAAAGGAGTATATTTATTGCTTTGTAGGAATTGAATGAAGAAATAATATCTCATGGCGAGAAAGTAGTAGTTGTTAAAAAGAGACAGCTTCAACTTTATGCTGGGCAGCTACTAACTGATGTTGAGATGGCGTTGTGCTCTATAATAGAACAAGATCAAAATGTGCCATAA

Protein sequence

>MS.gene78478.t1

MAIAHCFFFHAPFTTRRKPLVIVSSKTGQRKNYLRPKILKTLTKPSLSISPTLLQPPIPQPILSPPQEHELCVDIPADEMHGEDIAGAVDETGEFEGLRVSVDTAKDNRVFGNVSAKEIFKYGGIYLIGAFVFQTVRYLWNSRNEHSNGDLEVSEREKRNILFGGNGKTVEDQLVERKIEEIKLMAREARRIELLEKQGKREEEENGDPEIDGIEKEIGERLLKLKNRIKSNKDSSAALRLNGRGNSAGGGDMSVNPGKEELVFKKKSKFKSPSTKATKTPKGFPGTQDHRVSCVKPQGYGNQVTDHAGILDGDKQVNQQDVTHKNASGVPLEEKGKSVDDESGKVQNEGENLEEMMETPNRKTKDGVTPKSINNGGFPETSIGMSSPEVRELRTQNSQGFEKDNVDSINGSSGQGLAKKKSAANKAKVKQAKSRTDIWWLNLRYVLVILMQRGSNEEGHKGLYSLNFTSKEQEQNDDSYTVAFEDQADANNFCFLLESYFEDLGDNFSANAVPMSIQELNEEIISHGEKVVVVKKRQLQLYAGQLLTDVEMALCSIIEQDQNVP