AlfalfaGEDB | MS.gene88870

M. sativa cultivar XinJiangDaYe / MS.gene88870

KEGG: K02945
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00575.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88870.t1	XP_013469599.1	94.9	511	25	1	1	510	1	511	2.40E-264	921

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88870.t1	P46228	36.7	210	121	5	271	475	94	296	3.8e-24	114.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88870.t1	A0A072VPA0	94.9	511	25	1	1	510	1	511	1.7e-264	921.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene88870	0.819579	1.08E-52	-1.69E-46
MS.gene049153	MS.gene88870	0.824788	6.68E-54	-1.69E-46
MS.gene049351	MS.gene88870	0.819875	9.23E-53	-1.69E-46
MS.gene049356	MS.gene88870	0.813435	2.56E-51	-1.69E-46
MS.gene049491	MS.gene88870	0.803828	2.89E-49	-1.69E-46
MS.gene049661	MS.gene88870	0.825146	5.50E-54	-1.69E-46
MS.gene049662	MS.gene88870	0.816332	5.84E-52	-1.69E-46
MS.gene049758	MS.gene88870	0.86498	8.22E-65	-1.69E-46
MS.gene049910	MS.gene88870	0.800153	1.65E-48	-1.69E-46
MS.gene050076	MS.gene88870	0.801352	9.38E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88870.t1	MTR_1g097610	96.477	511	17	1	1	510	1	511	0.0	995
MS.gene88870.t1	MTR_2g033020	30.244	205	135	4	274	475	158	357	1.58e-22	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88870.t1	AT1G71720	57.490	494	168	9	26	509	37	498	0.0	532
MS.gene88870.t1	AT1G71720	58.156	423	139	6	26	441	37	428	2.35e-159	460
MS.gene88870.t1	AT5G30510	32.195	205	130	4	274	475	165	363	1.91e-25	108

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Find 88 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGAGAAGATAAGA+AGG	0.446272	1.1:-70248651	MS.gene88870:CDS
AAAAGATGGTGTGAGTGATG+AGG	0.692251	1.1:-70248693	MS.gene88870:CDS
AAAAGGCATATCTTCGTGAA+GGG	0.634782	1.1:-70246847	MS.gene88870:CDS
AAAGTCCAGGTTCACTTTCA+AGG	0.415620	1.1:+70245341	None:intergenic
AACAAGCTTGATGTAAATGT+TGG	0.533528	1.1:-70248560	MS.gene88870:CDS
AACAATTGAACCATGAGGAG+TGG	0.579544	1.1:+70249000	None:intergenic
AACTTGAATTTCATCATCAA+TGG	0.393250	1.1:+70248883	None:intergenic
AAGCATAAGGAAGAATTACA+AGG	0.632192	1.1:+70249094	None:intergenic
AAGGAAGTGCTTCCTTTGAA+TGG	0.425729	1.1:-70248509	MS.gene88870:CDS
AAGTCCAGGTTCACTTTCAA+GGG	0.528592	1.1:+70245342	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGGAGAAGATAAGA+AGG	-	chr1.1:70245546-70245565	MS.gene88870:intron	30.0%
AAACCAATTACATATCCCTA+AGG	+	chr1.1:70247756-70247775	None:intergenic	30.0%
AAAGATGGAAGATGAAATCT+TGG	+	chr1.1:70246014-70246033	None:intergenic	30.0%
AACAAGCTTGATGTAAATGT+TGG	-	chr1.1:70245637-70245656	MS.gene88870:intron	30.0%
AACATTGGATAGGAGTAAAA+AGG	+	chr1.1:70245975-70245994	None:intergenic	30.0%
AACCAATTACATATCCCTAA+GGG	+	chr1.1:70247755-70247774	None:intergenic	30.0%
AAGCATAAGGAAGAATTACA+AGG	+	chr1.1:70245106-70245125	None:intergenic	30.0%
AATGCCAGCTTGATAAAATA+TGG	+	chr1.1:70248371-70248390	None:intergenic	30.0%
AGGATTACTAACAGTGATAA+CGG	+	chr1.1:70246704-70246723	None:intergenic	30.0%
AGGTAGTAAAGATTATGTGA+AGG	-	chr1.1:70245435-70245454	MS.gene88870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	70245079	70249140	70245079	ID=MS.gene88870
chr1.1	mRNA	70245079	70249140	70245079	ID=MS.gene88870.t1;Parent=MS.gene88870
chr1.1	exon	70248268	70249140	70248268	ID=MS.gene88870.t1.exon1;Parent=MS.gene88870.t1
chr1.1	CDS	70248268	70249140	70248268	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70247347	70247421	70247347	ID=MS.gene88870.t1.exon2;Parent=MS.gene88870.t1
chr1.1	CDS	70247347	70247421	70247347	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70247193	70247264	70247193	ID=MS.gene88870.t1.exon3;Parent=MS.gene88870.t1
chr1.1	CDS	70247193	70247264	70247193	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70246997	70247077	70246997	ID=MS.gene88870.t1.exon4;Parent=MS.gene88870.t1
chr1.1	CDS	70246997	70247077	70246997	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70246773	70246870	70246773	ID=MS.gene88870.t1.exon5;Parent=MS.gene88870.t1
chr1.1	CDS	70246773	70246870	70246773	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70245675	70245800	70245675	ID=MS.gene88870.t1.exon6;Parent=MS.gene88870.t1
chr1.1	CDS	70245675	70245800	70245675	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70245324	70245372	70245324	ID=MS.gene88870.t1.exon7;Parent=MS.gene88870.t1
chr1.1	CDS	70245324	70245372	70245324	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1
chr1.1	exon	70245079	70245237	70245079	ID=MS.gene88870.t1.exon8;Parent=MS.gene88870.t1
chr1.1	CDS	70245079	70245237	70245079	ID=cds.MS.gene88870.t1;Parent=MS.gene88870.t1

Gene Sequence

>MS.gene88870

ATGCCATTTATTCTTCAACTTCATCCTTGTAATTCTTCCTTATGCTTCAACTGCAACTCCTTCATTTTCAGCAAGAAATCATATAAGAAAGTTTGTTCTTTTCCCAATATTGTTCTTTCCACTCCTCATGGTTCAATTGTTTCTAAGAAAGTTTCTATTTTGAGCAATACCCACTTCAAGTTTTGCTCTAAAAATGGTGGGTTTGATGAGGTTTCAAGTGATTTAGCTGGAGAAGCCATTGATGATGAAATTCAAGTTGAGTTGTTGAACAAGCCGTCACCTGTTTTGGAAGTTGAGATGGAACAAGAGAAGCCTTCTGAAGAGGAAGCTTTGGCACCTTTTTTTAAGTTTTTCAAAGGTAGTAAAGATTATGTGAAGGAGGTTGACGAAGATAATGAGGTATTAGAACTGGAAGTTTCTGAACAAAAAGATGGTGTGAGTGATGAGGTTGAAAAAGAAGATGAAGAAAAAGAAGGAGAAGATAAGAAGGTTAATGTTGAGTACTATGAGCCAAAACCTGGTGATTTTGTTGTTGGTGTTGTTGTTTCAGGTAATGAAAACAAGCTTGATGTAAATGTTGGAGCAGATTTACTAGGTACAATGTTAACCAAGGAAGTGCTTCCTTTGAATGGTAAAGAAATGGATCATTTGTTATGTGATGTGAACAAGGATGCGGAGAATTTTACGGTTCAAGGGAAGATGGGAATTGTAAAGAATGATGAAGTAATGAGTGCAGCATCAGTGCCAGGAAGGCCTGTTGTAGAAACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACACTTAGTGGTAGACCGTTGATTTCTACTAGAAGGCTCTTTCGTCGGATTGCTTGGCATCGAGTGAGGCAGGTTTTTATCTTTCTTTCATTCCTTTTTACTCCTATCCAATGTTTAGTTTAGTAGATGTTCCAAGATTTCATCTTCCATCTTTAATTTATGAGTCGGATTAAGTAGTTTTAATGACTAGTTTGAAGAGTTCATTATTTAGCAAACAGTAGTTTTGGTCCTAAATATACACATGAGAATTTGTTCTCCATTTATTAGCAATGCCAAATTGGCTCTTCAATGGTGACTAATGTATCCAACTTTTGCCCTGTTTGGATAAATGTTTATCATATAAGTGTTTGTGTATAAGTTGTTTCTATAACAAAAGCTAAAATAAAGTCAAATTGTTTTCATATAAGCTATAAACTATTTTCTTAAGTTTTCCTGAAGAGCTTATGGATATGTCATTAGCTGTTTACATAAGCTCTACCAAACAGTCTAACAAGTGCTTATGACAGTAGAAAACTTAAATAAGTTAATCCAAAGTCCAAACAGGCCCCTTTGTCTTTCAAGGGTCAGATTGCATTGTCTTAGTTTCTGGCCAGCTTGATGGCTAAAATGTGACTTGAAGGATCAATTTAATGTTTTGTATTAAAATTTCAATATTATAAATCAAGGACTTGAATGACTTGGTGTATATGTATGGAGGACCAAAAATTCATATCAAATTGGTAGGGAAATGTTTCATCATACTTATATATACTGAAATTTAGTAAAAAAGGAAATGTATGTTATCTAATAGCAAAATTGATGTCCATTATCTTATCAATACTCCGTTATCACTGTTAGTAATCCTATCTCTGTAAAGTCTAATGACATAATTCTAATGCTGTTAAGATTTTAATCTGATCTTTTTAATGTTTGGGGCAGATACAACAGCTCAATGAACCTATCGAGGTTAGAATTACAGAGTGGAATACTGGCGGCCTGCTAACAACGATTGAGGTCTTTCCCATTGACTTGAAATTTATGTTCCTGTGTCATTATTTGAGTAAATGCTTATTTCTTCATGAATTCGGATGTGTAGGGTTTACGAGCTTTCCTACCCAAAGCTGAGCTTGTGACAAGAGTAAATAGCTTTACTGAATTGAAAGAAAATGTAAGTTGCAGTTTTGGAACGTTCTTCTTGCCAAGGACAATTTTTTTCCATTCTGAACAGTGTAATTACTTACCTTATAATAATCTCTTGCTAATACTTGATCATGATGATGTAGGTGGGGCGTCGTATGTATGTAGAAATTACTCGAATAGATGAAGCAAAAAATTCTTTGGTGCTTAGTGAAAAGGGAGCTTGGGTTAGTATTCAAATCTATCTCTATTTCCTATTTTTCGTTACTTTCTTGCATCGATGTTTCGAGTATCTAGGTCTTACTTTTTTCATTTTATCGTCTGAAATTTCTGCTGTGTAAAACGACGTACAGGAAAAGGCATATCTTCGTGAAGGGACACTTTTAGACGGAACCGTAAAAAAGATCTTTCCATATGGAGCACAAATTAAGATTGGGAAAACTAACAGAAGGTGAGTGATTGCTAGGTTATAGATAACAAGCCCTTGAAAATATAACTCAATTTGAGTTCTTTTCGATGGATGATGGAAAATATAGATAATGCACTAGGAAAATCAGGCGGCACACCAAAACGATTGTTAAACTTTGAATTTGGTGGAATTGTTCTGAGCTGCATTAACTCTATAGTAATGAACTGGCCTGTCATTGTTATCTATATAGTGGATTGCATCTATGTTTCCTTTCCATTTATTTGCTGCTGTAATTGCATCTAAAACTTTTTTAATGGGCTCAAGTATCATTCTGCTTTCTGCATGAGCCCTTAGGGATATGTAATTGGTTTGGTATCAGGAATCTCTTCATTATCATAAGATTAATGTTTTAAAAACCGGAATAGAGCAAACCTGTCAGGCATTCAGGAACCAGTTAGGTGCCTGATAGATTTCAATAGCCCTTTTGGTTTGGCGTCCTCAAGACCTAAATCCCTGCTTCGCTTCAAACGAGTTGTTCTGATCCTACTATCTCCTAGAGACAGGGTAAACCCTGACCCCAAATAGTACGGTTTGGTTTGTTCAATGGGATGGATCCAGACGTGAATGCCCTGCTTGCTTTTTATATACAACAATTCTAGCATTTTATTGTTTTCTTCCCAAAATGAGAAATTTGGCATAATTTTATAGGTATGGTGTTAAAATTGATGAAGTTAACAAATATATAAAGTGCATCAACCCTTGTTTCTGCATAATTTTCTTTACTATCTTTGTTTCTATCATGGTATTAGTATTCACGTTCAGATATGTACCCTACTACCTTTTCGTTGTTATGGCTGCATTGCTGTAAATAGGCTTATATGTATCATGTACTGCAACTTTTAATCTGCAAGATTTCTATATCAACTTCATAAGTTTTAGTTGTTAATTTTGGATTAAACCTGTCCATATTTTATCAAGCTGGCATTCCAAATGAACATGTTGGATTCCTTTCAGTGGGTTGCTGCATGTTTCAAATATCACTCGAGCTGAAGTTACTTCTGTCAGTGACGTACTCTCCGTTGATGAGAAGGTTAAGGCTCTTGTTGTGAGGTCAATGTTCCCCGATAAAATCTCTCTGAGGTAATTGATTATTGACTTTAACTTCCTTTTGTAATTGTTGGGTGTATCAAGTCTTTCTGGGTTAATTGGCCTTGTTTGGTTAACATAAACAAACGAGTCAGGTAGCTTGAGACATGTAAATGCACAAAATTTATTTACCTAACGTGAAAATCCTCCAAGATTCAAAATTTGATTCGTACGTAGTCGAGCTCTAAGAACGGTTCTTCTACAGGAACAATGTTTTTAGCATTAAAAATAAGTCTTTTTAGCAGATCCAACTACATTCATGTTGTTGATGACAAGTTGTTTTTCTTACCATGCAGCATTGCCGCCCTTGAAAGTGAACCTGGACTTTTTCTTTCAAATAAAGAGGTGTTTATTTATTTGTTATTATCCTATTAAAATTTCTTCTATGGTTTTATTTAGATTGAATTCTTATTCATTTTTCGATCATACAGAGAGTATTTATGGAAGCTGATATGATGGCAAAGAAATATAAACAAAAGCTACCTCCTCCTATTGTCTCTACAAAATTAGGACCCTTACCAACTAGTGCTTTGCCGTTTGAAAATGAAGCACTTTATGCAAACTGGAAGTGGTTTAAGTTTGAAAAATGA

Protein sequence

>MS.gene88870.t1

MPFILQLHPCNSSLCFNCNSFIFSKKSYKKVCSFPNIVLSTPHGSIVSKKVSILSNTHFKFCSKNGGFDEVSSDLAGEAIDDEIQVELLNKPSPVLEVEMEQEKPSEEEALAPFFKFFKGSKDYVKEVDEDNEVLELEVSEQKDGVSDEVEKEDEEKEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEMDHLLCDVNKDAENFTVQGKMGIVKNDEVMSAASVPGRPVVETGTILFAEVLGRTLSGRPLISTRRLFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGRRMYVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDGTVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLSVDEKVKALVVRSMFPDKISLSIAALESEPGLFLSNKERVFMEADMMAKKYKQKLPPPIVSTKLGPLPTSALPFENEALYANWKWFKFEK