Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92559.t1 | XP_013454932.1 | 98.2 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 1.40E-123 | 452.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92559.t1 | P32110 | 66.1 | 224 | 75 | 1 | 1 | 223 | 1 | 224 | 2.6e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92559.t1 | B7FMM3 | 98.2 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 1.0e-123 | 452.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene92559 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene049351 | MS.gene92559 | 0.809883 | 1.52E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene92559 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene049427 | MS.gene92559 | 0.800144 | 1.65E-48 | -1.69E-46 |
| MS.gene049491 | MS.gene92559 | 0.839855 | 1.23E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene92559 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene92559 | 0.829729 | 4.37E-55 | -1.69E-46 |
| MS.gene050397 | MS.gene92559 | 0.822756 | 2.00E-53 | -1.69E-46 |
| MS.gene050399 | MS.gene92559 | 0.813397 | 2.61E-51 | -1.69E-46 |
| MS.gene050400 | MS.gene92559 | 0.815501 | 8.95E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene92559 | 0.804727 | 1.88E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene92559 | 0.819335 | 1.23E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene92559 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene92559 | 0.822481 | 2.31E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene92559 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene92559 | 0.83773 | 4.37E-57 | -1.69E-46 |
| MS.gene051255 | MS.gene92559 | 0.824239 | 8.99E-54 | -1.69E-46 |
| MS.gene051360 | MS.gene92559 | 0.820285 | 7.44E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene92559 | 0.81128 | 7.58E-51 | -1.69E-46 |
| MS.gene051605 | MS.gene92559 | 0.812573 | 3.96E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene92559 | 0.800276 | 1.55E-48 | -1.69E-46 |
| MS.gene052011 | MS.gene92559 | -0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene92559 | 0.805866 | 1.09E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene92559 | 0.821756 | 3.41E-53 | -1.69E-46 |
| MS.gene052178 | MS.gene92559 | 0.808856 | 2.52E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene92559 | 0.866507 | 2.71E-65 | -1.69E-46 |
| MS.gene052253 | MS.gene92559 | 0.866503 | 2.72E-65 | -1.69E-46 |
| MS.gene052310 | MS.gene92559 | 0.862759 | 4.04E-64 | -1.69E-46 |
| MS.gene052322 | MS.gene92559 | 0.835514 | 1.60E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene92559 | 0.872967 | 2.12E-67 | -1.69E-46 |
| MS.gene052421 | MS.gene92559 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene92559 | 0.830675 | 2.57E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene92559 | 0.819716 | 1.00E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene92559 | 0.850703 | 1.43E-60 | -1.69E-46 |
| MS.gene05316 | MS.gene92559 | 0.810243 | 1.27E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene92559 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene92559 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene92559 | 0.828856 | 7.13E-55 | -1.69E-46 |
| MS.gene053758 | MS.gene92559 | 0.850836 | 1.31E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene92559 | 0.811698 | 6.15E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene92559 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene92559 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene92559 | 0.815907 | 7.27E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene92559 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene92559 | 0.804996 | 1.65E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene92559 | 0.840618 | 7.80E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene92559 | 0.824049 | 9.96E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene92559 | 0.84185 | 3.70E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene92559 | 0.841051 | 6.01E-58 | -1.69E-46 |
| MS.gene055412 | MS.gene92559 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene055422 | MS.gene92559 | 0.814288 | 1.66E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene92559 | 0.802575 | 5.26E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene92559 | 0.825423 | 4.73E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene92559 | 0.806951 | 6.41E-50 | -1.69E-46 |
| MS.gene055666 | MS.gene92559 | 0.808122 | 3.62E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene92559 | 0.854994 | 8.49E-62 | -1.69E-46 |
| MS.gene056410 | MS.gene92559 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene92559 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene92559 | 0.802046 | 6.76E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene92559 | 0.821825 | 3.29E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene92559 | 0.845822 | 3.20E-59 | -1.69E-46 |
| MS.gene05702 | MS.gene92559 | 0.84648 | 2.12E-59 | -1.69E-46 |
| MS.gene057124 | MS.gene92559 | 0.813653 | 2.30E-51 | -1.69E-46 |
| MS.gene05733 | MS.gene92559 | 0.838738 | 2.41E-57 | -1.69E-46 |
| MS.gene057448 | MS.gene92559 | 0.803698 | 3.08E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene92559 | 0.803145 | 4.01E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene92559 | 0.845871 | 3.10E-59 | -1.69E-46 |
| MS.gene057796 | MS.gene92559 | 0.817249 | 3.64E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene92559 | 0.852001 | 6.15E-61 | -1.69E-46 |
| MS.gene057825 | MS.gene92559 | 0.81528 | 1.00E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene92559 | 0.84238 | 2.68E-58 | -1.69E-46 |
| MS.gene058007 | MS.gene92559 | 0.816768 | 4.66E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene92559 | 0.855757 | 5.09E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene92559 | 0.801038 | 1.09E-48 | -1.69E-46 |
| MS.gene058276 | MS.gene92559 | 0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene058376 | MS.gene92559 | 0.80289 | 4.53E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene92559 | 0.813989 | 1.94E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene92559 | 0.828802 | 7.34E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene92559 | 0.811557 | 6.60E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene92559 | 0.858922 | 5.90E-63 | -1.69E-46 |
| MS.gene058995 | MS.gene92559 | 0.804695 | 1.91E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene92559 | 0.85785 | 1.23E-62 | -1.69E-46 |
| MS.gene059141 | MS.gene92559 | 0.81828 | 2.13E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene92559 | 0.81043 | 1.16E-50 | -1.69E-46 |
| MS.gene059294 | MS.gene92559 | 0.840333 | 9.26E-58 | -1.69E-46 |
| MS.gene059366 | MS.gene92559 | 0.81283 | 3.48E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene92559 | 0.830745 | 2.47E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene92559 | 0.836431 | 9.39E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene92559 | 0.832861 | 7.42E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene92559 | 0.855118 | 7.82E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene92559 | 0.854812 | 9.59E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene92559 | 0.856513 | 3.06E-62 | -1.69E-46 |
| MS.gene059711 | MS.gene92559 | 0.80118 | 1.02E-48 | -1.69E-46 |
| MS.gene059807 | MS.gene92559 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene92559 | 0.853822 | 1.85E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene92559 | 0.829082 | 6.28E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene92559 | 0.830427 | 2.96E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene92559 | 0.807891 | 4.05E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene92559 | 0.811363 | 7.27E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene92559 | 0.817303 | 3.54E-52 | -1.69E-46 |
| MS.gene060469 | MS.gene92559 | 0.814621 | 1.40E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene92559 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene92559 | 0.82358 | 1.28E-53 | -1.69E-46 |
| MS.gene060986 | MS.gene92559 | 0.860107 | 2.60E-63 | -1.69E-46 |
| MS.gene061049 | MS.gene92559 | 0.847253 | 1.30E-59 | -1.69E-46 |
| MS.gene061154 | MS.gene92559 | 0.811373 | 7.23E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene92559 | 0.818818 | 1.61E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92559.t1 | MTR_4g019790 | 98.222 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 1.35e-162 | 448 |
| MS.gene92559.t1 | MTR_7g065720 | 65.158 | 221 | 76 | 1 | 1 | 220 | 1 | 221 | 4.21e-105 | 303 |
| MS.gene92559.t1 | MTR_7g065660 | 61.778 | 225 | 86 | 0 | 1 | 225 | 1 | 225 | 2.32e-104 | 301 |
| MS.gene92559.t1 | MTR_7g065590 | 61.435 | 223 | 86 | 0 | 1 | 223 | 1 | 223 | 9.53e-104 | 299 |
| MS.gene92559.t1 | MTR_7g065740 | 62.389 | 226 | 84 | 1 | 1 | 225 | 1 | 226 | 1.26e-103 | 299 |
| MS.gene92559.t1 | MTR_7g065290 | 63.470 | 219 | 80 | 0 | 1 | 219 | 1 | 219 | 1.46e-103 | 298 |
| MS.gene92559.t1 | MTR_7g065600 | 61.883 | 223 | 85 | 0 | 1 | 223 | 1 | 223 | 3.95e-103 | 298 |
| MS.gene92559.t1 | MTR_7g065750 | 64.159 | 226 | 80 | 1 | 1 | 225 | 1 | 226 | 4.22e-102 | 295 |
| MS.gene92559.t1 | MTR_7g065270 | 61.290 | 217 | 84 | 0 | 1 | 217 | 1 | 217 | 1.61e-96 | 281 |
| MS.gene92559.t1 | MTR_7g065265 | 60.829 | 217 | 85 | 0 | 1 | 217 | 1 | 217 | 5.01e-95 | 277 |
| MS.gene92559.t1 | MTR_7g065640 | 58.222 | 225 | 76 | 2 | 1 | 225 | 1 | 207 | 4.89e-94 | 274 |
| MS.gene92559.t1 | MTR_4g019780 | 60.094 | 213 | 83 | 2 | 4 | 215 | 5 | 216 | 6.45e-94 | 274 |
| MS.gene92559.t1 | MTR_7g065230 | 58.744 | 223 | 87 | 1 | 1 | 223 | 1 | 218 | 7.03e-94 | 274 |
| MS.gene92559.t1 | MTR_7g065630 | 60.000 | 225 | 86 | 1 | 1 | 225 | 19 | 239 | 2.43e-93 | 273 |
| MS.gene92559.t1 | MTR_7g065260 | 60.268 | 224 | 88 | 1 | 1 | 223 | 8 | 231 | 7.06e-91 | 267 |
| MS.gene92559.t1 | MTR_7g065710 | 57.005 | 207 | 85 | 1 | 8 | 214 | 5 | 207 | 3.89e-81 | 242 |
| MS.gene92559.t1 | MTR_7g065700 | 60.748 | 214 | 80 | 1 | 1 | 214 | 1 | 210 | 5.06e-80 | 239 |
| MS.gene92559.t1 | MTR_7g065680 | 56.444 | 225 | 94 | 1 | 1 | 225 | 1 | 221 | 2.44e-79 | 237 |
| MS.gene92559.t1 | MTR_1g090150 | 46.606 | 221 | 113 | 3 | 7 | 224 | 3 | 221 | 9.65e-66 | 203 |
| MS.gene92559.t1 | MTR_6g080440 | 45.714 | 210 | 112 | 2 | 5 | 213 | 1 | 209 | 2.10e-65 | 202 |
| MS.gene92559.t1 | MTR_8g087425 | 46.188 | 223 | 112 | 3 | 7 | 225 | 5 | 223 | 2.44e-65 | 202 |
| MS.gene92559.t1 | MTR_3g099757 | 44.889 | 225 | 120 | 3 | 1 | 224 | 1 | 222 | 6.88e-63 | 195 |
| MS.gene92559.t1 | MTR_1g115195 | 46.977 | 215 | 109 | 3 | 6 | 216 | 2 | 215 | 2.47e-61 | 191 |
| MS.gene92559.t1 | MTR_8g087410 | 44.690 | 226 | 122 | 3 | 1 | 225 | 1 | 224 | 9.37e-61 | 190 |
| MS.gene92559.t1 | MTR_4g059730 | 44.811 | 212 | 113 | 2 | 7 | 215 | 4 | 214 | 1.04e-59 | 187 |
| MS.gene92559.t1 | MTR_5g040430 | 40.991 | 222 | 123 | 3 | 1 | 215 | 1 | 221 | 6.80e-58 | 183 |
| MS.gene92559.t1 | MTR_1g090060 | 41.778 | 225 | 124 | 3 | 6 | 224 | 2 | 225 | 5.30e-56 | 178 |
| MS.gene92559.t1 | MTR_1g090070 | 41.892 | 222 | 126 | 1 | 6 | 224 | 8 | 229 | 7.60e-56 | 177 |
| MS.gene92559.t1 | MTR_1g090090 | 42.857 | 210 | 116 | 2 | 6 | 212 | 2 | 210 | 1.93e-54 | 174 |
| MS.gene92559.t1 | MTR_1g090100 | 42.180 | 211 | 118 | 2 | 8 | 215 | 3 | 212 | 8.32e-53 | 169 |
| MS.gene92559.t1 | MTR_5g037380 | 41.892 | 222 | 121 | 2 | 7 | 220 | 5 | 226 | 7.41e-51 | 165 |
| MS.gene92559.t1 | MTR_8g061950 | 40.183 | 219 | 123 | 4 | 5 | 215 | 3 | 221 | 6.38e-48 | 157 |
| MS.gene92559.t1 | MTR_2g070150 | 41.872 | 203 | 113 | 4 | 7 | 207 | 4 | 203 | 2.25e-47 | 155 |
| MS.gene92559.t1 | MTR_2g070130 | 43.902 | 205 | 110 | 5 | 7 | 209 | 4 | 205 | 1.05e-46 | 154 |
| MS.gene92559.t1 | MTR_2g070140 | 41.753 | 194 | 108 | 4 | 21 | 212 | 2 | 192 | 3.10e-46 | 152 |
| MS.gene92559.t1 | MTR_2g070200 | 40.796 | 201 | 115 | 3 | 7 | 205 | 4 | 202 | 3.93e-43 | 145 |
| MS.gene92559.t1 | MTR_3g467420 | 39.048 | 210 | 123 | 4 | 5 | 212 | 7 | 213 | 7.98e-43 | 144 |
| MS.gene92559.t1 | MTR_2g070180 | 39.901 | 203 | 117 | 4 | 7 | 207 | 4 | 203 | 3.57e-42 | 142 |
| MS.gene92559.t1 | MTR_2g070210 | 40.952 | 210 | 117 | 5 | 7 | 212 | 4 | 210 | 1.17e-41 | 141 |
| MS.gene92559.t1 | MTR_2g070120 | 39.524 | 210 | 120 | 6 | 7 | 213 | 4 | 209 | 7.25e-41 | 139 |
| MS.gene92559.t1 | MTR_2g070060 | 39.171 | 217 | 124 | 5 | 1 | 215 | 1 | 211 | 1.26e-40 | 138 |
| MS.gene92559.t1 | MTR_4g124130 | 43.979 | 191 | 99 | 6 | 5 | 191 | 2 | 188 | 1.29e-40 | 138 |
| MS.gene92559.t1 | MTR_8g056940 | 38.462 | 208 | 123 | 4 | 7 | 212 | 4 | 208 | 1.56e-40 | 138 |
| MS.gene92559.t1 | MTR_3g467430 | 37.441 | 211 | 127 | 4 | 4 | 212 | 6 | 213 | 3.97e-40 | 137 |
| MS.gene92559.t1 | MTR_5g076900 | 40.097 | 207 | 119 | 4 | 8 | 212 | 7 | 210 | 1.11e-39 | 136 |
| MS.gene92559.t1 | MTR_2g070070 | 41.014 | 217 | 120 | 5 | 1 | 215 | 1 | 211 | 8.29e-39 | 134 |
| MS.gene92559.t1 | MTR_0186s0030 | 46.715 | 137 | 71 | 2 | 7 | 142 | 4 | 139 | 3.99e-35 | 122 |
| MS.gene92559.t1 | MTR_2g070110 | 39.189 | 222 | 126 | 6 | 1 | 220 | 1 | 215 | 2.06e-34 | 122 |
| MS.gene92559.t1 | MTR_2g072120 | 50.769 | 65 | 31 | 1 | 51 | 114 | 2 | 66 | 3.24e-17 | 73.9 |
| MS.gene92559.t1 | MTR_5g037390 | 39.726 | 73 | 41 | 1 | 31 | 100 | 11 | 83 | 2.88e-11 | 58.5 |
| MS.gene92559.t1 | MTR_1g067180 | 27.354 | 223 | 136 | 7 | 6 | 217 | 26 | 233 | 4.17e-11 | 61.2 |
| MS.gene92559.t1 | MTR_1g067180 | 26.636 | 214 | 131 | 6 | 15 | 217 | 32 | 230 | 9.16e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92559.t1 | AT3G09270 | 49.776 | 223 | 108 | 4 | 3 | 222 | 2 | 223 | 5.55e-79 | 236 |
| MS.gene92559.t1 | AT2G29420 | 46.188 | 223 | 118 | 2 | 3 | 224 | 5 | 226 | 9.66e-73 | 221 |
| MS.gene92559.t1 | AT2G29490 | 48.804 | 209 | 104 | 3 | 1 | 207 | 1 | 208 | 5.02e-63 | 196 |
| MS.gene92559.t1 | AT2G29480 | 49.289 | 211 | 100 | 4 | 1 | 207 | 1 | 208 | 1.09e-61 | 192 |
| MS.gene92559.t1 | AT2G29460 | 44.053 | 227 | 120 | 4 | 1 | 223 | 1 | 224 | 7.53e-59 | 185 |
| MS.gene92559.t1 | AT2G29450 | 46.117 | 206 | 109 | 2 | 4 | 207 | 3 | 208 | 4.24e-58 | 183 |
| MS.gene92559.t1 | AT2G29470 | 43.810 | 210 | 114 | 4 | 1 | 207 | 1 | 209 | 8.29e-55 | 175 |
| MS.gene92559.t1 | AT2G29440 | 41.553 | 219 | 125 | 3 | 7 | 223 | 6 | 223 | 3.49e-54 | 173 |
| MS.gene92559.t1 | AT1G59700 | 43.723 | 231 | 121 | 4 | 4 | 225 | 3 | 233 | 1.02e-52 | 170 |
| MS.gene92559.t1 | AT1G59670 | 44.091 | 220 | 115 | 3 | 3 | 214 | 2 | 221 | 1.18e-52 | 170 |
| MS.gene92559.t1 | AT1G10370 | 41.475 | 217 | 120 | 2 | 5 | 214 | 3 | 219 | 1.27e-50 | 164 |
| MS.gene92559.t1 | AT1G69920 | 40.183 | 219 | 123 | 4 | 8 | 218 | 35 | 253 | 1.25e-48 | 160 |
| MS.gene92559.t1 | AT1G74590 | 38.559 | 236 | 127 | 5 | 1 | 224 | 1 | 230 | 1.83e-48 | 159 |
| MS.gene92559.t1 | AT1G27130 | 38.073 | 218 | 127 | 3 | 8 | 217 | 7 | 224 | 2.10e-48 | 159 |
| MS.gene92559.t1 | AT5G62480 | 38.009 | 221 | 126 | 3 | 5 | 215 | 6 | 225 | 7.64e-48 | 157 |
| MS.gene92559.t1 | AT1G78380 | 42.991 | 214 | 114 | 5 | 1 | 212 | 1 | 208 | 2.17e-47 | 155 |
| MS.gene92559.t1 | AT1G78340 | 41.346 | 208 | 117 | 4 | 7 | 212 | 4 | 208 | 9.80e-47 | 154 |
| MS.gene92559.t1 | AT1G78370 | 41.463 | 205 | 115 | 4 | 10 | 212 | 7 | 208 | 2.34e-46 | 153 |
| MS.gene92559.t1 | AT1G69930 | 37.037 | 216 | 130 | 2 | 8 | 217 | 13 | 228 | 2.36e-46 | 154 |
| MS.gene92559.t1 | AT1G78320 | 42.029 | 207 | 113 | 5 | 7 | 210 | 4 | 206 | 1.78e-45 | 151 |
| MS.gene92559.t1 | AT1G17170 | 41.509 | 212 | 118 | 5 | 7 | 216 | 4 | 211 | 6.58e-45 | 149 |
| MS.gene92559.t1 | AT1G10360 | 38.140 | 215 | 126 | 3 | 7 | 214 | 5 | 219 | 2.01e-44 | 148 |
| MS.gene92559.t1 | AT1G27140 | 38.073 | 218 | 126 | 3 | 8 | 216 | 7 | 224 | 5.34e-43 | 145 |
| MS.gene92559.t1 | AT1G17180 | 39.904 | 208 | 120 | 4 | 7 | 212 | 4 | 208 | 8.21e-43 | 144 |
| MS.gene92559.t1 | AT1G53680 | 39.130 | 207 | 121 | 4 | 1 | 204 | 1 | 205 | 1.76e-42 | 143 |
| MS.gene92559.t1 | AT1G78360 | 39.048 | 210 | 122 | 5 | 6 | 212 | 3 | 209 | 1.72e-39 | 135 |
| MS.gene92559.t1 | AT1G17190 | 39.720 | 214 | 122 | 5 | 1 | 212 | 1 | 209 | 5.86e-39 | 134 |
| MS.gene92559.t1 | AT3G43800 | 38.725 | 204 | 116 | 6 | 7 | 204 | 5 | 205 | 1.15e-38 | 134 |
| MS.gene92559.t1 | AT1G78320 | 35.922 | 206 | 100 | 5 | 7 | 210 | 4 | 179 | 4.63e-30 | 110 |
| MS.gene92559.t1 | AT5G62480 | 30.909 | 220 | 117 | 4 | 5 | 215 | 6 | 199 | 1.94e-29 | 109 |
| MS.gene92559.t1 | AT5G62480 | 30.909 | 220 | 116 | 4 | 5 | 215 | 6 | 198 | 3.37e-29 | 108 |
Find 49 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCCTACTTAGCTTTC+TGG | 0.061163 | 4.2:-82446696 | MS.gene92559:CDS |
| GTTCATTCTCAAGAAATTCT+AGG | 0.255826 | 4.2:+82446767 | None:intergenic |
| AGAAAGCCTTGGCTAGATTT+TGG | 0.279971 | 4.2:-82447205 | MS.gene92559:CDS |
| GAACTCAAGCACAAATTCTT+TGG | 0.284917 | 4.2:-82446748 | MS.gene92559:CDS |
| TAAGGTTGTTGAGGGAAAAT+AGG | 0.325386 | 4.2:+82447230 | None:intergenic |
| CAGGCACCTTCTTGTGAATA+GGG | 0.332659 | 4.2:+82447330 | None:intergenic |
| CTAGCCAAGGCTTTCTCATA+AGG | 0.348130 | 4.2:+82447212 | None:intergenic |
| CAAGGAGAAGTTCAATTGTT+AGG | 0.356671 | 4.2:-82447470 | MS.gene92559:CDS |
| AAGCCGAGGAGTCCATCTTT+TGG | 0.356975 | 4.2:+82446556 | None:intergenic |
| AATTTCCTAAGCTCTATAAA+TGG | 0.358102 | 4.2:-82446624 | MS.gene92559:CDS |
| ACAGGCACCTTCTTGTGAAT+AGG | 0.360494 | 4.2:+82447329 | None:intergenic |
| TTGAACTTCTCCTTGATCAT+TGG | 0.365725 | 4.2:+82447478 | None:intergenic |
| ATTTGCACCCTTCGAACAAA+TGG | 0.368308 | 4.2:+82447434 | None:intergenic |
| GGGAGATTCTCTTTCACAAT+AGG | 0.380629 | 4.2:+82446580 | None:intergenic |
| CTTACATTGAAGAAAATCTA+AGG | 0.391102 | 4.2:-82447382 | MS.gene92559:CDS |
| CATGCAGCCTTTGATATTGC+TGG | 0.393495 | 4.2:+82446841 | None:intergenic |
| ATGTTTCATCAATGTATTCA+AGG | 0.424371 | 4.2:+82447264 | None:intergenic |
| CTTTCTCATAAGGTTGTTGA+GGG | 0.434221 | 4.2:+82447222 | None:intergenic |
| CAAATTGCTCTAAAACTAAA+GGG | 0.440385 | 4.2:-82447416 | MS.gene92559:CDS |
| GCAAATTGCTCTAAAACTAA+AGG | 0.446586 | 4.2:-82447417 | MS.gene92559:CDS |
| GAAGTTCAATTGTTAGGTGT+AGG | 0.453999 | 4.2:-82447464 | MS.gene92559:CDS |
| TGACTCCATTTATAGAGCTT+AGG | 0.457524 | 4.2:+82446619 | None:intergenic |
| TTCATTCTCAAGAAATTCTA+GGG | 0.459545 | 4.2:+82446768 | None:intergenic |
| GTTCAATTGTTAGGTGTAGG+AGG | 0.480588 | 4.2:-82447461 | MS.gene92559:CDS |
| AGGAAGCCAGAAAGCTAAGT+AGG | 0.500826 | 4.2:+82446690 | None:intergenic |
| TTTGCACCCTTCGAACAAAT+GGG | 0.505097 | 4.2:+82447435 | None:intergenic |
| GATCACAAGGGACTCAGCTA+AGG | 0.517350 | 4.2:+82447286 | None:intergenic |
| TTTGAAATGGCCAATGATCA+AGG | 0.518333 | 4.2:-82447488 | None:intergenic |
| AACAAAGAAGAACGTGAGAA+AGG | 0.523741 | 4.2:-82446811 | MS.gene92559:CDS |
| GCTTTCTCATAAGGTTGTTG+AGG | 0.531026 | 4.2:+82447221 | None:intergenic |
| CTCAAGCACAAATTCTTTGG+TGG | 0.534226 | 4.2:-82446745 | MS.gene92559:CDS |
| CTGTGATTGAAGAAGCTGTA+GGG | 0.541030 | 4.2:-82446669 | MS.gene92559:CDS |
| CAGCCTTTGATATTGCTGGC+AGG | 0.552662 | 4.2:+82446845 | None:intergenic |
| GAGGAAGCCCATTTGTTCGA+AGG | 0.559814 | 4.2:-82447442 | MS.gene92559:CDS |
| CAATGTATTCAAGGATCACA+AGG | 0.561254 | 4.2:+82447273 | None:intergenic |
| GTCGAGGTTCATTGATGACA+AGG | 0.566263 | 4.2:-82447183 | MS.gene92559:intron |
| TTGAATACATTGATGAAACA+TGG | 0.571451 | 4.2:-82447262 | MS.gene92559:CDS |
| AGGAAGCCCATTTGTTCGAA+GGG | 0.574450 | 4.2:-82447441 | MS.gene92559:CDS |
| ACAACCTTATGAGAAAGCCT+TGG | 0.593342 | 4.2:-82447216 | MS.gene92559:CDS |
| CCTGTGATTGAAGAAGCTGT+AGG | 0.598472 | 4.2:-82446670 | MS.gene92559:CDS |
| ATCACAAGGGACTCAGCTAA+GGG | 0.601842 | 4.2:+82447287 | None:intergenic |
| CAGCAATATCAAAGGCTGCA+TGG | 0.606136 | 4.2:-82446840 | MS.gene92559:CDS |
| CCTACAGCTTCTTCAATCAC+AGG | 0.610321 | 4.2:+82446670 | None:intergenic |
| GTATAACCCTATTCACAAGA+AGG | 0.611526 | 4.2:-82447336 | MS.gene92559:CDS |
| TGAATACATTGATGAAACAT+GGG | 0.611722 | 4.2:-82447261 | MS.gene92559:CDS |
| TGGAGAAAACATTAGCATTG+TGG | 0.621375 | 4.2:-82446725 | MS.gene92559:CDS |
| GATCCTGCCAGCAATATCAA+AGG | 0.632199 | 4.2:-82446848 | MS.gene92559:CDS |
| CCTCGACCAAAATCTAGCCA+AGG | 0.632913 | 4.2:+82447199 | None:intergenic |
| AATGTATTCAAGGATCACAA+GGG | 0.737483 | 4.2:+82447274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCTTTTGAAAAGATATT+AGG | + | chr4.2:82446969-82446988 | None:intergenic | 15.0% |
| !!! | TGTTGTTTCATAATATTATT+AGG | + | chr4.2:82447103-82447122 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTGAAAAGATATT+AGG | + | chr4.2:82447066-82447085 | None:intergenic | 15.0% |
| !!! | ATTTTCGTTGAAAAGATATT+AGG | + | chr4.2:82447010-82447029 | None:intergenic | 20.0% |
| ! | AAGATATTAGGTACAAGATT+TGG | + | chr4.2:82446957-82446976 | None:intergenic | 25.0% |
| ! | AATTTCCTAAGCTCTATAAA+TGG | - | chr4.2:82447371-82447390 | MS.gene92559:CDS | 25.0% |
| ! | ATGTTTCATCAATGTATTCA+AGG | + | chr4.2:82446734-82446753 | None:intergenic | 25.0% |
| ! | CTTACATTGAAGAAAATCTA+AGG | - | chr4.2:82446613-82446632 | MS.gene92559:CDS | 25.0% |
| ! | TGAATACATTGATGAAACAT+GGG | - | chr4.2:82446734-82446753 | MS.gene92559:CDS | 25.0% |
| ! | TTCATTCTCAAGAAATTCTA+GGG | + | chr4.2:82447230-82447249 | None:intergenic | 25.0% |
| ! | TTGAATACATTGATGAAACA+TGG | - | chr4.2:82446733-82446752 | MS.gene92559:CDS | 25.0% |
| !!! | CAAATTGCTCTAAAACTAAA+GGG | - | chr4.2:82446579-82446598 | MS.gene92559:CDS | 25.0% |
| AATGTATTCAAGGATCACAA+GGG | + | chr4.2:82446724-82446743 | None:intergenic | 30.0% | |
| GTTCATTCTCAAGAAATTCT+AGG | + | chr4.2:82447231-82447250 | None:intergenic | 30.0% | |
| TTTCCATTATGGACAAAAAC+AGG | + | chr4.2:82446687-82446706 | None:intergenic | 30.0% | |
| !! | GCAAATTGCTCTAAAACTAA+AGG | - | chr4.2:82446578-82446597 | MS.gene92559:CDS | 30.0% |
| AACAAAGAAGAACGTGAGAA+AGG | - | chr4.2:82447184-82447203 | MS.gene92559:CDS | 35.0% | |
| CAAGGAGAAGTTCAATTGTT+AGG | - | chr4.2:82446525-82446544 | MS.gene92559:CDS | 35.0% | |
| CAATGTATTCAAGGATCACA+AGG | + | chr4.2:82446725-82446744 | None:intergenic | 35.0% | |
| CTTTCTCATAAGGTTGTTGA+GGG | + | chr4.2:82446776-82446795 | None:intergenic | 35.0% | |
| GAACTCAAGCACAAATTCTT+TGG | - | chr4.2:82447247-82447266 | MS.gene92559:CDS | 35.0% | |
| GAAGTTCAATTGTTAGGTGT+AGG | - | chr4.2:82446531-82446550 | MS.gene92559:CDS | 35.0% | |
| GTATAACCCTATTCACAAGA+AGG | - | chr4.2:82446659-82446678 | MS.gene92559:CDS | 35.0% | |
| TAAGGTTGTTGAGGGAAAAT+AGG | + | chr4.2:82446768-82446787 | None:intergenic | 35.0% | |
| TGACTCCATTTATAGAGCTT+AGG | + | chr4.2:82447379-82447398 | None:intergenic | 35.0% | |
| TGGAGAAAACATTAGCATTG+TGG | - | chr4.2:82447270-82447289 | MS.gene92559:CDS | 35.0% | |
| TTGAACTTCTCCTTGATCAT+TGG | + | chr4.2:82446520-82446539 | None:intergenic | 35.0% | |
| ACAACCTTATGAGAAAGCCT+TGG | - | chr4.2:82446779-82446798 | MS.gene92559:CDS | 40.0% | |
| ACGATAAACCACCATGATTC+TGG | + | chr4.2:82446900-82446919 | None:intergenic | 40.0% | |
| ATCGAGATTTGAAAAAGCCG+AGG | + | chr4.2:82447456-82447475 | None:intergenic | 40.0% | |
| ATTTGCACCCTTCGAACAAA+TGG | + | chr4.2:82446564-82446583 | None:intergenic | 40.0% | |
| CTCAAGCACAAATTCTTTGG+TGG | - | chr4.2:82447250-82447269 | MS.gene92559:CDS | 40.0% | |
| CTGTGATTGAAGAAGCTGTA+GGG | - | chr4.2:82447326-82447345 | MS.gene92559:CDS | 40.0% | |
| GCTTTCTCATAAGGTTGTTG+AGG | + | chr4.2:82446777-82446796 | None:intergenic | 40.0% | |
| GGGAGATTCTCTTTCACAAT+AGG | + | chr4.2:82447418-82447437 | None:intergenic | 40.0% | |
| GTTCAATTGTTAGGTGTAGG+AGG | - | chr4.2:82446534-82446553 | MS.gene92559:CDS | 40.0% | |
| TGATGTATCTGCCAGAATCA+TGG | - | chr4.2:82446886-82446905 | MS.gene92559:intron | 40.0% | |
| TTTGCACCCTTCGAACAAAT+GGG | + | chr4.2:82446563-82446582 | None:intergenic | 40.0% | |
| ! | AGAAAGCCTTGGCTAGATTT+TGG | - | chr4.2:82446790-82446809 | MS.gene92559:CDS | 40.0% |
| ! | CAGCTAAGGGTTTTCCATTA+TGG | + | chr4.2:82446698-82446717 | None:intergenic | 40.0% |
| !!! | GTGCCTGTTTTTGTCCATAA+TGG | - | chr4.2:82446681-82446700 | MS.gene92559:CDS | 40.0% |
| ACAGGCACCTTCTTGTGAAT+AGG | + | chr4.2:82446669-82446688 | None:intergenic | 45.0% | |
| AGGAAGCCAGAAAGCTAAGT+AGG | + | chr4.2:82447308-82447327 | None:intergenic | 45.0% | |
| AGGAAGCCCATTTGTTCGAA+GGG | - | chr4.2:82446554-82446573 | MS.gene92559:CDS | 45.0% | |
| ATCACAAGGGACTCAGCTAA+GGG | + | chr4.2:82446711-82446730 | None:intergenic | 45.0% | |
| CAGCAATATCAAAGGCTGCA+TGG | - | chr4.2:82447155-82447174 | MS.gene92559:intron | 45.0% | |
| CAGGCACCTTCTTGTGAATA+GGG | + | chr4.2:82446668-82446687 | None:intergenic | 45.0% | |
| CATGCAGCCTTTGATATTGC+TGG | + | chr4.2:82447157-82447176 | None:intergenic | 45.0% | |
| CCTACAGCTTCTTCAATCAC+AGG | + | chr4.2:82447328-82447347 | None:intergenic | 45.0% | |
| CCTGTGATTGAAGAAGCTGT+AGG | - | chr4.2:82447325-82447344 | MS.gene92559:CDS | 45.0% | |
| CTAGCCAAGGCTTTCTCATA+AGG | + | chr4.2:82446786-82446805 | None:intergenic | 45.0% | |
| GATCCTGCCAGCAATATCAA+AGG | - | chr4.2:82447147-82447166 | MS.gene92559:intron | 45.0% | |
| TGTATCTGCCAGAATCATGG+TGG | - | chr4.2:82446889-82446908 | MS.gene92559:intron | 45.0% | |
| ! | CTGCTTCCTACTTAGCTTTC+TGG | - | chr4.2:82447299-82447318 | MS.gene92559:CDS | 45.0% |
| ! | GTCGAGGTTCATTGATGACA+AGG | - | chr4.2:82446812-82446831 | MS.gene92559:CDS | 45.0% |
| CAGCCTTTGATATTGCTGGC+AGG | + | chr4.2:82447153-82447172 | None:intergenic | 50.0% | |
| CCTCGACCAAAATCTAGCCA+AGG | + | chr4.2:82446799-82446818 | None:intergenic | 50.0% | |
| GAGAATCTCCCCCCAAAAGA+TGG | - | chr4.2:82447427-82447446 | MS.gene92559:CDS | 50.0% | |
| GAGGAAGCCCATTTGTTCGA+AGG | - | chr4.2:82446553-82446572 | MS.gene92559:CDS | 50.0% | |
| GATCACAAGGGACTCAGCTA+AGG | + | chr4.2:82446712-82446731 | None:intergenic | 50.0% | |
| ! | AAGCCGAGGAGTCCATCTTT+TGG | + | chr4.2:82447442-82447461 | None:intergenic | 50.0% |
| ! | AGCCGAGGAGTCCATCTTTT+GGG | + | chr4.2:82447441-82447460 | None:intergenic | 50.0% |
| !! | CCTTGGCTAGATTTTGGTCG+AGG | - | chr4.2:82446796-82446815 | MS.gene92559:CDS | 50.0% |
| ! | CCCCCAAAAGATGGACTCCT+CGG | - | chr4.2:82447436-82447455 | MS.gene92559:CDS | 55.0% |
| ! | CCGAGGAGTCCATCTTTTGG+GGG | + | chr4.2:82447439-82447458 | None:intergenic | 55.0% |
| ! | CGAGGAGTCCATCTTTTGGG+GGG | + | chr4.2:82447438-82447457 | None:intergenic | 55.0% |
| ! | GCCGAGGAGTCCATCTTTTG+GGG | + | chr4.2:82447440-82447459 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 82446513 | 82447504 | 82446513 | ID=MS.gene92559 |
| chr4.2 | mRNA | 82446513 | 82447504 | 82446513 | ID=MS.gene92559.t1;Parent=MS.gene92559 |
| chr4.2 | exon | 82447184 | 82447504 | 82447184 | ID=MS.gene92559.t1.exon1;Parent=MS.gene92559.t1 |
| chr4.2 | CDS | 82447184 | 82447504 | 82447184 | ID=cds.MS.gene92559.t1;Parent=MS.gene92559.t1 |
| chr4.2 | exon | 82446513 | 82446869 | 82446513 | ID=MS.gene92559.t1.exon2;Parent=MS.gene92559.t1 |
| chr4.2 | CDS | 82446513 | 82446869 | 82446513 | ID=cds.MS.gene92559.t1;Parent=MS.gene92559.t1 |
| Gene Sequence |
| Protein sequence |
