AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017436.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017436.01.T01 MTR_3g107530 90.842 273 17 2 22 288 60 330 7.67e-168 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017436.01.T01 AT5G11270 48.659 261 127 1 28 281 91 351 1.65e-67 214

Find 53 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCTCCGGGCGTAGTTTC+AGG 0.263805 3:+96234287 None:intergenic
GGTGATACTGCTGATGGTTT+AGG 0.275225 3:+96234308 None:intergenic
TCCACCTCATACATTAATAA+TGG 0.299112 3:+96237855 None:intergenic
TTCTCGAAAGAGATTGAAAA+AGG 0.338696 3:-96234171 MsG0380017436.01.T01:CDS
GATCATGCTCATGCAGAATC+TGG 0.343580 3:-96234242 MsG0380017436.01.T01:CDS
CCACCTCATACATTAATAAT+GGG 0.409974 3:+96237856 None:intergenic
GCTGATGGTTTAGGTTCATC+AGG 0.425177 3:+96234317 None:intergenic
TTCATGACATGCAACAGAAT+TGG 0.427701 3:-96234196 MsG0380017436.01.T01:CDS
TTCTTTATGAAAAGAATCTC+CGG 0.439788 3:+96234274 None:intergenic
CGCGGAGAACAGTTATTAAG+TGG 0.452000 3:-96233070 MsG0380017436.01.T01:CDS
TTCTGTTGCATGTCATGAAT+AGG 0.457484 3:+96234200 None:intergenic
TTGGCTAGAGCATTGAAAAC+TGG 0.460688 3:-96235438 MsG0380017436.01.T01:CDS
ATAGGTAAGTTAGACTTCTT+CGG 0.466152 3:+96234218 None:intergenic
CGTGAGTTGGAAGGTGTGTT+GGG 0.479759 3:-96235585 MsG0380017436.01.T01:CDS
TCATTAGCAGACTGCTGGTA+AGG 0.483094 3:+96233002 None:intergenic
TTGTTTCATTAGCAGACTGC+TGG 0.483884 3:+96232997 None:intergenic
TGTTTGAAAAGCAACTCAAA+TGG 0.492775 3:+96235708 None:intergenic
ATTCGCTGAAGCTTAGAACT+TGG 0.492933 3:-96235473 MsG0380017436.01.T01:CDS
AAAGGCTTACACTTAGTTTG+CGG 0.505407 3:+96235412 None:intergenic
TGCTTTGTTAGAACGTGAGT+TGG 0.513640 3:-96235598 MsG0380017436.01.T01:CDS
GGTCCCATTATTAATGTATG+AGG 0.514257 3:-96237859 MsG0380017436.01.T01:CDS
CTCAGCATCAGAAGACTTGG+TGG 0.517452 3:+96234350 None:intergenic
AGCTCTATCAAGACAGAGCT+CGG 0.525713 3:+96234400 None:intergenic
ACGTGAGTTGGAAGGTGTGT+TGG 0.531369 3:-96235586 MsG0380017436.01.T01:CDS
AGACAAACGTGCCGAGGAGG+GGG 0.542683 3:-96233042 MsG0380017436.01.T01:CDS
GTTTCAGGTGATACTGCTGA+TGG 0.555775 3:+96234302 None:intergenic
AGGCTCAGCATCAGAAGACT+TGG 0.557597 3:+96234347 None:intergenic
TGGTAAGGAAGACGATGCTC+TGG 0.560826 3:+96233017 None:intergenic
CCCATTATTAATGTATGAGG+TGG 0.562228 3:-96237856 MsG0380017436.01.T01:CDS
AAATTGACTCATGTTACAGA+GGG 0.567201 3:-96235747 MsG0380017436.01.T01:CDS
AACTTGGCAATTGAATACAT+TGG 0.575518 3:-96235457 MsG0380017436.01.T01:CDS
AGCATCAGAAGACTTGGTGG+AGG 0.576518 3:+96234353 None:intergenic
TAGGTTCATCAGGAATCGAT+AGG 0.584575 3:+96234327 None:intergenic
TCTTTATGAAAAGAATCTCC+GGG 0.584998 3:+96234275 None:intergenic
GTATCACCTGAAACTACGCC+CGG 0.589871 3:-96234293 MsG0380017436.01.T01:CDS
GAAGACAAACGTGCCGAGGA+GGG 0.595141 3:-96233044 MsG0380017436.01.T01:CDS
AAAGGCTCAACTTGACACGC+TGG 0.611700 3:-96234153 MsG0380017436.01.T01:CDS
TTGTTAGAACGTGAGTTGGA+AGG 0.619119 3:-96235594 MsG0380017436.01.T01:CDS
TGAAGACAAACGTGCCGAGG+AGG 0.619168 3:-96233045 MsG0380017436.01.T01:CDS
AAGACAAACGTGCCGAGGAG+GGG 0.620622 3:-96233043 MsG0380017436.01.T01:CDS
TGCATGTTTCAAACATTCCG+CGG 0.630435 3:-96233088 MsG0380017436.01.T01:CDS
AAAATTGACTCATGTTACAG+AGG 0.638213 3:-96235748 MsG0380017436.01.T01:CDS
GTCAGTGACGACAGCCGCGG+TGG 0.644467 3:-96237880 MsG0380017436.01.T01:CDS
GCATCAGAAGACTTGGTGGA+GGG 0.649310 3:+96234354 None:intergenic
GTTTGAAGACAAACGTGCCG+AGG 0.651860 3:-96233048 MsG0380017436.01.T01:CDS
TGTTACAGAGGGGAATGACG+AGG 0.686418 3:-96235736 MsG0380017436.01.T01:CDS
TACAGAGGGGAATGACGAGG+AGG 0.700089 3:-96235733 MsG0380017436.01.T01:CDS
ACAGATATCAGCGAAACACA+AGG 0.708447 3:-96235537 MsG0380017436.01.T01:CDS
CACTTAATAACTGTTCTCCG+CGG 0.713242 3:+96233071 None:intergenic
TATGTCAGTGACGACAGCCG+CGG 0.714530 3:-96237883 MsG0380017436.01.T01:CDS
GAGTTTACATGAGATCAAAG+CGG 0.731573 3:-96234127 MsG0380017436.01.T01:CDS
AATTGACTCATGTTACAGAG+GGG 0.739510 3:-96235746 MsG0380017436.01.T01:CDS
CATTAATAATGGGACCACCG+CGG 0.744600 3:+96237866 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTAATTAGTTGATA+TGG - Chr3:96233296-96233315 MsG0380017436.01.T01:intron 10.0%
!!! ACTTTGTTTTTTTTTTTTTA+AGG + Chr3:96234708-96234727 None:intergenic 10.0%
!!! ATTTATTTTTTTTCTTGAAA+AGG + Chr3:96234755-96234774 None:intergenic 10.0%
!! AAAGCATAGAATAATAAATT+AGG + Chr3:96235078-96235097 None:intergenic 15.0%
!! AATTAAACTCAAAACAAATT+AGG + Chr3:96235506-96235525 None:intergenic 15.0%
!! AATTTAATAGTGAGATTTAT+TGG + Chr3:96237470-96237489 None:intergenic 15.0%
!! ATATTCCAATAATATTATGT+GGG - Chr3:96233164-96233183 MsG0380017436.01.T01:intron 15.0%
!! CTAAAAATACAAAATTCAAA+AGG + Chr3:96235483-96235502 None:intergenic 15.0%
!! TAATTATATCAGAATTCTTT+AGG + Chr3:96233093-96233112 None:intergenic 15.0%
!! TATATTCCAATAATATTATG+TGG - Chr3:96233163-96233182 MsG0380017436.01.T01:intron 15.0%
!!! TTAAAAATTCATAGTTTGTT+AGG - Chr3:96233901-96233920 MsG0380017436.01.T01:intron 15.0%
!! ACATTTGATATATTTAGCAT+CGG - Chr3:96237276-96237295 MsG0380017436.01.T01:intron 20.0%
!! AGTGATCAAATTAAGTAATA+AGG - Chr3:96233244-96233263 MsG0380017436.01.T01:intron 20.0%
!! ATCTAAAGATAAATAGCATT+CGG - Chr3:96233060-96233079 MsG0380017436.01.T01:CDS 20.0%
!! ATTAAGGAGATTAAGAATTA+GGG + Chr3:96233594-96233613 None:intergenic 20.0%
!! ATTAGCTATTTATCATTTGT+GGG - Chr3:96233209-96233228 MsG0380017436.01.T01:intron 20.0%
!! GAATAAAAAGTTTAAGCAAA+TGG + Chr3:96235841-96235860 None:intergenic 20.0%
!! TATGAATCATTGAATTGTAT+TGG + Chr3:96235044-96235063 None:intergenic 20.0%
!! TATTAAGGAGATTAAGAATT+AGG + Chr3:96233595-96233614 None:intergenic 20.0%
!! TATTAGCTATTTATCATTTG+TGG - Chr3:96233208-96233227 MsG0380017436.01.T01:intron 20.0%
!! TTAATTCATATATACAACGT+TGG + Chr3:96235587-96235606 None:intergenic 20.0%
!! TTCCAAAAAGAAAAACAATA+AGG - Chr3:96234973-96234992 MsG0380017436.01.T01:intron 20.0%
!! TTTATATTAAGAATCTCAGA+TGG - Chr3:96236245-96236264 MsG0380017436.01.T01:intron 20.0%
!!! AACCTTATTGTTTTTCTTTT+TGG + Chr3:96234978-96234997 None:intergenic 20.0%
!!! AAGATTTTACTAGTTATGTA+TGG + Chr3:96236890-96236909 None:intergenic 20.0%
!!! ATGAATTTTTAAGTGAACTT+TGG + Chr3:96233893-96233912 None:intergenic 20.0%
!!! TTTTCAAATATGCATATTGT+TGG + Chr3:96234137-96234156 None:intergenic 20.0%
! AAACTTGTGATATTGAAGTA+TGG + Chr3:96236793-96236812 None:intergenic 25.0%
! AAGGCTATTAGATTTCTAAT+TGG - Chr3:96233263-96233282 MsG0380017436.01.T01:intron 25.0%
! AATAGAATATATGCACAAAG+AGG + Chr3:96237584-96237603 None:intergenic 25.0%
! AATGATGTAGAAAAAAGTAG+TGG - Chr3:96235364-96235383 MsG0380017436.01.T01:intron 25.0%
! AATGTTAGTAGTTAGTTAGT+TGG - Chr3:96235972-96235991 MsG0380017436.01.T01:intron 25.0%
! AATTGTATTGGATTTGGATT+TGG + Chr3:96235032-96235051 None:intergenic 25.0%
! ACATTGAACATGATTATGAT+CGG + Chr3:96233637-96233656 None:intergenic 25.0%
! AGTTAACAAGTTGTGAAATA+AGG + Chr3:96237706-96237725 None:intergenic 25.0%
! ATATATACAACGTTGGTATT+TGG + Chr3:96235580-96235599 None:intergenic 25.0%
! ATGATATGAATAGGATTACT+TGG - Chr3:96235684-96235703 MsG0380017436.01.T01:CDS 25.0%
! ATGGTTCAAAAAGTTAAGAT+TGG + Chr3:96233864-96233883 None:intergenic 25.0%
! ATTTGATCACTAATCAACTA+AGG + Chr3:96233235-96233254 None:intergenic 25.0%
! ATTTGCCCACATAATATTAT+TGG + Chr3:96233172-96233191 None:intergenic 25.0%
! TAGTATATTTGCCTTTAATC+AGG + Chr3:96236141-96236160 None:intergenic 25.0%
! TCATTGAATTGTATTGGATT+TGG + Chr3:96235038-96235057 None:intergenic 25.0%
! TGATTGTCATATATATGATG+TGG + Chr3:96234588-96234607 None:intergenic 25.0%
! TTCAAAAAGTTAAGATTGGA+CGG + Chr3:96233860-96233879 None:intergenic 25.0%
! TTCTTTATGAAAAGAATCTC+CGG + Chr3:96236603-96236622 None:intergenic 25.0%
!! ACGACATGTTTGATTTATTA+AGG + Chr3:96233610-96233629 None:intergenic 25.0%
!! ATAATATTTTTCATGTTCGC+AGG + Chr3:96234311-96234330 None:intergenic 25.0%
!! CTAGTTGATATATTAAAGAG+TGG - Chr3:96236158-96236177 MsG0380017436.01.T01:intron 25.0%
!! CTTCAATATCACAAGTTTTA+TGG - Chr3:96236795-96236814 MsG0380017436.01.T01:intron 25.0%
!! GTGACTTTTTAATCTAATGA+TGG - Chr3:96237504-96237523 MsG0380017436.01.T01:intron 25.0%
!!! AGCTTGTTATTCTTCTTTTT+TGG - Chr3:96233832-96233851 MsG0380017436.01.T01:intron 25.0%
!!! ATTGTTTTTCTTTTTGGAAG+AGG + Chr3:96234972-96234991 None:intergenic 25.0%
!!! TTAGCTTGCAAAAATATCAA+AGG + Chr3:96234281-96234300 None:intergenic 25.0%
AAAACAAACAAGAACGTTAG+CGG + Chr3:96233500-96233519 None:intergenic 30.0%
AAATGCAGATCATATCATAC+AGG + Chr3:96235759-96235778 None:intergenic 30.0%
AAATGGGGTAAATGTCATAT+AGG - Chr3:96237251-96237270 MsG0380017436.01.T01:intron 30.0%
AACAAGCTAAGTCTAACAAA+TGG + Chr3:96233820-96233839 None:intergenic 30.0%
AACAGAATCAACAACCTTTA+TGG - Chr3:96234194-96234213 MsG0380017436.01.T01:CDS 30.0%
AACTTAAACTCTCAAAGGAA+GGG - Chr3:96234036-96234055 MsG0380017436.01.T01:intron 30.0%
AACTTGGCAATTGAATACAT+TGG - Chr3:96235417-96235436 MsG0380017436.01.T01:intron 30.0%
AAGATAAACTTGCGAGTTTA+TGG + Chr3:96234258-96234277 None:intergenic 30.0%
AATGCTATAATATGCAGTGA+TGG + Chr3:96237632-96237651 None:intergenic 30.0%
AATGGGGTAAATGTCATATA+GGG - Chr3:96237252-96237271 MsG0380017436.01.T01:intron 30.0%
ACATTTGAATGTAGCGATAA+GGG - Chr3:96234471-96234490 MsG0380017436.01.T01:intron 30.0%
AGATAAACTTGCGAGTTTAT+GGG + Chr3:96234257-96234276 None:intergenic 30.0%
ATAGGTAAGTTAGACTTCTT+CGG + Chr3:96236659-96236678 None:intergenic 30.0%
ATCATACAGGTATTTCATGT+AGG + Chr3:96235746-96235765 None:intergenic 30.0%
ATCCAATATAAAAGAGGCTA+TGG - Chr3:96233378-96233397 MsG0380017436.01.T01:intron 30.0%
ATGGCAAGTTTAACTATGTA+TGG + Chr3:96236832-96236851 None:intergenic 30.0%
ATGTTCAACATACCCTTTAT+TGG + Chr3:96234086-96234105 None:intergenic 30.0%
CAACAATTATGAATCGATAG+CGG + Chr3:96233671-96233690 None:intergenic 30.0%
CCACCTCATACATTAATAAT+GGG + Chr3:96233021-96233040 None:intergenic 30.0%
CCTTATCAATGAATGACAAA+AGG + Chr3:96235915-96235934 None:intergenic 30.0%
GAGATTAAGAATTAGGGATT+AGG + Chr3:96233588-96233607 None:intergenic 30.0%
GTGTATCAGATGATATGAAT+AGG - Chr3:96235675-96235694 MsG0380017436.01.T01:CDS 30.0%
TAACTTAAACTCTCAAAGGA+AGG - Chr3:96234035-96234054 MsG0380017436.01.T01:intron 30.0%
TAGATTTCAACCTTACAATC+TGG + Chr3:96233045-96233064 None:intergenic 30.0%
TCCACCTCATACATTAATAA+TGG + Chr3:96233022-96233041 None:intergenic 30.0%
TCTTAAACACTTGTCTTGTA+TGG + Chr3:96235790-96235809 None:intergenic 30.0%
TCTTTATGAAAAGAATCTCC+GGG + Chr3:96236602-96236621 None:intergenic 30.0%
TGATGCTTGTATTAGTATTC+TGG - Chr3:96237016-96237035 MsG0380017436.01.T01:intron 30.0%
TGGACGACTTGAAAATAAAT+GGG - Chr3:96237235-96237254 MsG0380017436.01.T01:intron 30.0%
TGTGAGAAGTGAAAAAACTA+AGG + Chr3:96234509-96234528 None:intergenic 30.0%
TGTGTAACTTAAACTCTCAA+AGG - Chr3:96234031-96234050 MsG0380017436.01.T01:intron 30.0%
TGTTTGAAAAGCAACTCAAA+TGG + Chr3:96235169-96235188 None:intergenic 30.0%
TTAACATGTATTGCAAGTCT+TGG + Chr3:96237172-96237191 None:intergenic 30.0%
TTAAGAAACCAAAATGCTTG+TGG - Chr3:96235804-96235823 MsG0380017436.01.T01:intron 30.0%
TTATCTGCAACAAATTCGAA+AGG + Chr3:96236442-96236461 None:intergenic 30.0%
TTCTCGAAAGAGATTGAAAA+AGG - Chr3:96236703-96236722 MsG0380017436.01.T01:intron 30.0%
TTTATATTGGATGGCCATTA+GGG + Chr3:96233370-96233389 None:intergenic 30.0%
TTTCCCATTATTCCGTTAAT+GGG + Chr3:96233347-96233366 None:intergenic 30.0%
! AAAATTGACTCATGTTACAG+AGG - Chr3:96235126-96235145 MsG0380017436.01.T01:intron 30.0%
! AAATTGACTCATGTTACAGA+GGG - Chr3:96235127-96235146 MsG0380017436.01.T01:intron 30.0%
! ATACATCCAAGTTGAAGTTA+AGG + Chr3:96236215-96236234 None:intergenic 30.0%
! ATAGCCTCTTTTATATTGGA+TGG + Chr3:96233379-96233398 None:intergenic 30.0%
! ATTGGATTTGGATTTGGAAT+TGG + Chr3:96235026-96235045 None:intergenic 30.0%
! ATTTTTCTCAGTTTACACCA+CGG + Chr3:96234821-96234840 None:intergenic 30.0%
! CCTTTTGTCATTCATTGATA+AGG - Chr3:96235912-96235931 MsG0380017436.01.T01:intron 30.0%
! TTTTATATTGGATGGCCATT+AGG + Chr3:96233371-96233390 None:intergenic 30.0%
!! AGTGAGATTTATTGGTTCAA+TGG + Chr3:96237462-96237481 None:intergenic 30.0%
!! GGCTTTAGGTAAATCAATAA+TGG + Chr3:96233996-96234015 None:intergenic 30.0%
!! TTCGATGTCACTTTGTTTAT+TGG + Chr3:96234552-96234571 None:intergenic 30.0%
!!! TTACTTTTTCTTGTCCCTAA+AGG + Chr3:96236092-96236111 None:intergenic 30.0%
!!! TTTCTTGCTTTTGTTTTTCG+TGG + Chr3:96233761-96233780 None:intergenic 30.0%
AAGTGAACTTTGGACTAACA+TGG + Chr3:96233883-96233902 None:intergenic 35.0%
AATTAGGGATTAGGAATACC+TGG + Chr3:96233579-96233598 None:intergenic 35.0%
ACCTTATATGCTTCTTTGTG+CGG - Chr3:96237379-96237398 MsG0380017436.01.T01:intron 35.0%
AGCATACATGATGATACAAC+TGG + Chr3:96237066-96237085 None:intergenic 35.0%
AGGAGAAGGAAAAAGTAAAC+TGG - Chr3:96235932-96235951 MsG0380017436.01.T01:intron 35.0%
AGTAGTTAGTTAGTTGGTCA+GGG - Chr3:96235978-96235997 MsG0380017436.01.T01:intron 35.0%
ATGGCCATCCAATATAAAAG+AGG - Chr3:96233372-96233391 MsG0380017436.01.T01:intron 35.0%
ATGGGGTAAATGTCATATAG+GGG - Chr3:96237253-96237272 MsG0380017436.01.T01:intron 35.0%
ATTAAGATATGTAGCCCAAG+TGG - Chr3:96233112-96233131 MsG0380017436.01.T01:CDS 35.0%
CAAACACCTTAACTTCAACT+TGG - Chr3:96236206-96236225 MsG0380017436.01.T01:intron 35.0%
CAAGTTATGTGCAACCATAA+AGG + Chr3:96234211-96234230 None:intergenic 35.0%
CAATCCCTAATGTTAACTTC+CGG - Chr3:96236398-96236417 MsG0380017436.01.T01:intron 35.0%
CCCATTATTAATGTATGAGG+TGG - Chr3:96233018-96233037 MsG0380017436.01.T01:CDS 35.0%
GACATTTGAATGTAGCGATA+AGG - Chr3:96234470-96234489 MsG0380017436.01.T01:intron 35.0%
GAGTTTACATGAGATCAAAG+CGG - Chr3:96236747-96236766 MsG0380017436.01.T01:intron 35.0%
GCATACATGATGATACAACT+GGG + Chr3:96237065-96237084 None:intergenic 35.0%
GGACGACTTGAAAATAAATG+GGG - Chr3:96237236-96237255 MsG0380017436.01.T01:intron 35.0%
GGTCCCATTATTAATGTATG+AGG - Chr3:96233015-96233034 MsG0380017436.01.T01:CDS 35.0%
GGTGTTTGCAAGCAAATTAA+CGG + Chr3:96236194-96236213 None:intergenic 35.0%
GTCATTCATTGATAAGGAGA+AGG - Chr3:96235918-96235937 MsG0380017436.01.T01:intron 35.0%
GTGGACGACTTGAAAATAAA+TGG - Chr3:96237234-96237253 MsG0380017436.01.T01:intron 35.0%
GTGGTGTAAACTGAGAAAAA+TGG - Chr3:96234820-96234839 MsG0380017436.01.T01:intron 35.0%
GTTTCCCATTATTCCGTTAA+TGG + Chr3:96233348-96233367 None:intergenic 35.0%
TAGTAGTTAGTTAGTTGGTC+AGG - Chr3:96235977-96235996 MsG0380017436.01.T01:intron 35.0%
TCATCTGATACACTTAGTTG+TGG + Chr3:96235668-96235687 None:intergenic 35.0%
TTAAGATATGTAGCCCAAGT+GGG - Chr3:96233113-96233132 MsG0380017436.01.T01:CDS 35.0%
TTCATGACATGCAACAGAAT+TGG - Chr3:96236678-96236697 MsG0380017436.01.T01:intron 35.0%
TTCTGTTGCATGTCATGAAT+AGG + Chr3:96236677-96236696 None:intergenic 35.0%
! AAAGGCTTACACTTAGTTTG+CGG + Chr3:96235465-96235484 None:intergenic 35.0%
! AATTGACTCATGTTACAGAG+GGG - Chr3:96235128-96235147 MsG0380017436.01.T01:intron 35.0%
! ACTGTTTTCCACAAGCATTT+TGG + Chr3:96235815-96235834 None:intergenic 35.0%
! ATGGCAAGTTTAACTTACAG+TGG + Chr3:96236774-96236793 None:intergenic 35.0%
! CAAAGAAGCATATAAGGTGA+TGG + Chr3:96237377-96237396 None:intergenic 35.0%
! GACCATAGCCTCTTTTATAT+TGG + Chr3:96233383-96233402 None:intergenic 35.0%
! TACTTGGTTTGAGTATGAAG+AGG - Chr3:96235700-96235719 MsG0380017436.01.T01:CDS 35.0%
! TGGCAAGTTTAACTTACAGT+GGG + Chr3:96236773-96236792 None:intergenic 35.0%
! TTTTTCTCAGTTTACACCAC+GGG + Chr3:96234820-96234839 None:intergenic 35.0%
!! GAGATTTATTGGTTCAATGG+TGG + Chr3:96237459-96237478 None:intergenic 35.0%
!! GTTTTTCTTTTTGGAAGAGG+CGG + Chr3:96234969-96234988 None:intergenic 35.0%
!! TACACTCCATTTTTCTAGTC+CGG - Chr3:96236943-96236962 MsG0380017436.01.T01:intron 35.0%
!!! TGTTTTAGCTTAGAAGCAGA+GGG + Chr3:96234178-96234197 None:intergenic 35.0%
!!! TTGCTTTTGTTTTTCGTGGA+GGG + Chr3:96233757-96233776 None:intergenic 35.0%
AAACAGGAAATGCTAGTAGG+AGG - Chr3:96236002-96236021 MsG0380017436.01.T01:intron 40.0%
AAAGGAGTAGTGTAGTGGTT+TGG + Chr3:96236074-96236093 None:intergenic 40.0%
AAAGTGACAAGCATGTGTCT+TGG - Chr3:96237653-96237672 MsG0380017436.01.T01:intron 40.0%
AACAGGAAATGCTAGTAGGA+GGG - Chr3:96236003-96236022 MsG0380017436.01.T01:intron 40.0%
AACCACTACACTACTCCTTT+AGG - Chr3:96236074-96236093 MsG0380017436.01.T01:intron 40.0%
AATGACAAAAGGCCAAGTCA+AGG + Chr3:96235904-96235923 None:intergenic 40.0%
ACAGATATCAGCGAAACACA+AGG - Chr3:96235337-96235356 MsG0380017436.01.T01:intron 40.0%
ACCACTACACTACTCCTTTA+GGG - Chr3:96236075-96236094 MsG0380017436.01.T01:intron 40.0%
ATAAAGCGAGAAGGAAAGAG+AGG - Chr3:96236320-96236339 MsG0380017436.01.T01:intron 40.0%
ATACCTGGATAGAGCTTTCA+TGG + Chr3:96233564-96233583 None:intergenic 40.0%
ATCCATGCCACTCCAATAAA+GGG - Chr3:96234071-96234090 MsG0380017436.01.T01:intron 40.0%
ATGGCCCATTAACGGAATAA+TGG - Chr3:96233340-96233359 MsG0380017436.01.T01:intron 40.0%
ATTCCAACAATCTCCCACTT+GGG + Chr3:96233129-96233148 None:intergenic 40.0%
ATTCGCTGAAGCTTAGAACT+TGG - Chr3:96235401-96235420 MsG0380017436.01.T01:intron 40.0%
ATTTAAGAGGGAATTGCTGC+CGG + Chr3:96236965-96236984 None:intergenic 40.0%
CAACATACCCTTTATTGGAG+TGG + Chr3:96234081-96234100 None:intergenic 40.0%
CACTTAATAACTGTTCTCCG+CGG + Chr3:96237806-96237825 None:intergenic 40.0%
CATTGTAGTTCAAGACAGAC+AGG + Chr3:96237741-96237760 None:intergenic 40.0%
CTCCTGCTTAGAACTTCTTT+GGG - Chr3:96236040-96236059 MsG0380017436.01.T01:intron 40.0%
GAAGAGAACTTGAGGCATAA+AGG - Chr3:96233445-96233464 MsG0380017436.01.T01:intron 40.0%
GAGTCCGGAAGTTAACATTA+GGG + Chr3:96236405-96236424 None:intergenic 40.0%
GGAAAACAGGAAATGCTAGT+AGG - Chr3:96235999-96236018 MsG0380017436.01.T01:intron 40.0%
GTAAACTTGATAGATCAGCC+AGG - Chr3:96236108-96236127 MsG0380017436.01.T01:intron 40.0%
GTAGAAAAAAGTAGTGGCGA+TGG - Chr3:96235370-96235389 MsG0380017436.01.T01:intron 40.0%
GTGAAACTGAGAAATGAGTC+CGG + Chr3:96236420-96236439 None:intergenic 40.0%
GTTCATGTGATAAAGCGAGA+AGG - Chr3:96236311-96236330 MsG0380017436.01.T01:intron 40.0%
GTTGATATGGACTCAATGAG+TGG - Chr3:96233309-96233328 MsG0380017436.01.T01:intron 40.0%
TAAAGCGAGAAGGAAAGAGA+GGG - Chr3:96236321-96236340 MsG0380017436.01.T01:intron 40.0%
TAGGTTCATCAGGAATCGAT+AGG + Chr3:96236550-96236569 None:intergenic 40.0%
TAGTTCAAGACAGACAGGTA+AGG + Chr3:96237736-96237755 None:intergenic 40.0%
TATGCATATTGTTGGTCGAG+TGG + Chr3:96234129-96234148 None:intergenic 40.0%
TATTCCAACAATCTCCCACT+TGG + Chr3:96233130-96233149 None:intergenic 40.0%
TCAAGCTAAGTGTCATATCG+TGG - Chr3:96237215-96237234 MsG0380017436.01.T01:intron 40.0%
TCACTTGTGCACCATAGAAT+TGG + Chr3:96237405-96237424 None:intergenic 40.0%
TCCTGCTTAGAACTTCTTTG+GGG - Chr3:96236041-96236060 MsG0380017436.01.T01:intron 40.0%
TGAGTCCGGAAGTTAACATT+AGG + Chr3:96236406-96236425 None:intergenic 40.0%
TGCATGTTTCAAACATTCCG+CGG - Chr3:96237786-96237805 MsG0380017436.01.T01:intron 40.0%
TGGCCCATTAACGGAATAAT+GGG - Chr3:96233341-96233360 MsG0380017436.01.T01:intron 40.0%
TTGTTTCATTAGCAGACTGC+TGG + Chr3:96237880-96237899 None:intergenic 40.0%
! AACTTGAGGCATAAAGGTAC+CGG - Chr3:96233451-96233470 MsG0380017436.01.T01:intron 40.0%
! AAGGTGATGGTTGACATTGT+GGG + Chr3:96237364-96237383 None:intergenic 40.0%
! ACGATATGACACTTAGCTTG+AGG + Chr3:96237216-96237235 None:intergenic 40.0%
! AGTAGTGTAGTGGTTTGGAT+TGG + Chr3:96236069-96236088 None:intergenic 40.0%
! CAAAGAGGCTTTGTCTAACA+TGG + Chr3:96237569-96237588 None:intergenic 40.0%
! GGAATAATGGGAAACCCTAA+TGG - Chr3:96233353-96233372 MsG0380017436.01.T01:intron 40.0%
! TAAGGTGATGGTTGACATTG+TGG + Chr3:96237365-96237384 None:intergenic 40.0%
! TGCTTTGTTAGAACGTGAGT+TGG - Chr3:96235276-96235295 MsG0380017436.01.T01:intron 40.0%
! TTGTTAGAACGTGAGTTGGA+AGG - Chr3:96235280-96235299 MsG0380017436.01.T01:intron 40.0%
! TTTTCTCAGTTTACACCACG+GGG + Chr3:96234819-96234838 None:intergenic 40.0%
!! AGATGGATTTTCCTTGCAAG+GGG - Chr3:96236262-96236281 MsG0380017436.01.T01:intron 40.0%
!! CAGATGGATTTTCCTTGCAA+GGG - Chr3:96236261-96236280 MsG0380017436.01.T01:intron 40.0%
!! TCAGATGGATTTTCCTTGCA+AGG - Chr3:96236260-96236279 MsG0380017436.01.T01:intron 40.0%
!! TCTGATTTGCTTCCTTGACT+TGG - Chr3:96235889-96235908 MsG0380017436.01.T01:intron 40.0%
!! TGATTTGGTTCTTCCTCAAC+CGG + Chr3:96233473-96233492 None:intergenic 40.0%
!! TTGGCTAGAGCATTGAAAAC+TGG - Chr3:96235436-96235455 MsG0380017436.01.T01:CDS 40.0%
!!! CTGTTTTAGCTTAGAAGCAG+AGG + Chr3:96234179-96234198 None:intergenic 40.0%
!!! CTTGCTTTTGTTTTTCGTGG+AGG + Chr3:96233758-96233777 None:intergenic 40.0%
!!! TGCTTTTGTTTTTCGTGGAG+GGG + Chr3:96233756-96233775 None:intergenic 40.0%
ACAAACAAGAACGTTAGCGG+CGG + Chr3:96233497-96233516 None:intergenic 45.0%
ACTTGATAGATCAGCCAGGT+TGG - Chr3:96236112-96236131 MsG0380017436.01.T01:intron 45.0%
AGAGTGAAGGAGAAGAGAAG+AGG + Chr3:96234908-96234927 None:intergenic 45.0%
AGCTCTATCAAGACAGAGCT+CGG + Chr3:96236477-96236496 None:intergenic 45.0%
ATGAGGTGGACCAGATTGTA+AGG - Chr3:96233032-96233051 MsG0380017436.01.T01:CDS 45.0%
ATGTCTGGATGGCCCATTAA+CGG - Chr3:96233332-96233351 MsG0380017436.01.T01:intron 45.0%
ATTGAGCAGACAACTAGCAC+AGG + Chr3:96236382-96236401 None:intergenic 45.0%
CAAAGGAAGGGAGTCTACTA+CGG - Chr3:96234048-96234067 MsG0380017436.01.T01:intron 45.0%
CAGTGTTTAGTCACAGTCAG+AGG - Chr3:96234854-96234873 MsG0380017436.01.T01:intron 45.0%
CCTCAAGTTCTCTTCAGATG+GGG + Chr3:96233440-96233459 None:intergenic 45.0%
CCTCCTGCTTAGAACTTCTT+TGG - Chr3:96236039-96236058 MsG0380017436.01.T01:intron 45.0%
CGCGGAGAACAGTTATTAAG+TGG - Chr3:96237804-96237823 MsG0380017436.01.T01:intron 45.0%
CGGTGACAATTGAAGAGTAG+AGG + Chr3:96234949-96234968 None:intergenic 45.0%
CTTGATAGATCAGCCAGGTT+GGG - Chr3:96236113-96236132 MsG0380017436.01.T01:intron 45.0%
GATCATGCTCATGCAGAATC+TGG - Chr3:96236632-96236651 MsG0380017436.01.T01:intron 45.0%
GATCCATGCCACTCCAATAA+AGG - Chr3:96234070-96234089 MsG0380017436.01.T01:intron 45.0%
GCCTCAAGTTCTCTTCAGAT+GGG + Chr3:96233441-96233460 None:intergenic 45.0%
GGTGATACTGCTGATGGTTT+AGG + Chr3:96236569-96236588 None:intergenic 45.0%
GTTAGTTGGTCAGGGAAAAC+AGG - Chr3:96235986-96236005 MsG0380017436.01.T01:intron 45.0%
GTTTACCGTTGCCATTGAGA+GGG - Chr3:96233535-96233554 MsG0380017436.01.T01:intron 45.0%
TACCCTTTATTGGAGTGGCA+TGG + Chr3:96234076-96234095 None:intergenic 45.0%
TCAATGAGTGGATGTCTGGA+TGG - Chr3:96233321-96233340 MsG0380017436.01.T01:intron 45.0%
TCATTAGCAGACTGCTGGTA+AGG + Chr3:96237875-96237894 None:intergenic 45.0%
TCCCTAAAGGAGTAGTGTAG+TGG + Chr3:96236079-96236098 None:intergenic 45.0%
TCGCTGCAAAGAAGAGGATT+GGG + Chr3:96234882-96234901 None:intergenic 45.0%
TCTTTGTGCGGCCAATTCTA+TGG - Chr3:96237391-96237410 MsG0380017436.01.T01:intron 45.0%
TGCCTCAAGTTCTCTTCAGA+TGG + Chr3:96233442-96233461 None:intergenic 45.0%
TGGCAACGGTAAACAAAGAG+AGG + Chr3:96233529-96233548 None:intergenic 45.0%
TGTTTACCGTTGCCATTGAG+AGG - Chr3:96233534-96233553 MsG0380017436.01.T01:intron 45.0%
TTCGCCGTGTACGGTATATT+GGG + Chr3:96233406-96233425 None:intergenic 45.0%
TTCGCTGCAAAGAAGAGGAT+TGG + Chr3:96234883-96234902 None:intergenic 45.0%
TTGATAGATCAGCCAGGTTG+GGG - Chr3:96236114-96236133 MsG0380017436.01.T01:intron 45.0%
! AGGTTTTCGCTGCAAAGAAG+AGG + Chr3:96234888-96234907 None:intergenic 45.0%
! CATTAATAATGGGACCACCG+CGG + Chr3:96233011-96233030 None:intergenic 45.0%
! GCCGCACAAAGAAGCATATA+AGG + Chr3:96237383-96237402 None:intergenic 45.0%
! GCTGATGGTTTAGGTTCATC+AGG + Chr3:96236560-96236579 None:intergenic 45.0%
! GTTTCAGGTGATACTGCTGA+TGG + Chr3:96236575-96236594 None:intergenic 45.0%
! TACACAAGCTTTAGCTCACG+AGG + Chr3:96234017-96234036 None:intergenic 45.0%
! TTGCTGCCGGACTAGAAAAA+TGG + Chr3:96236952-96236971 None:intergenic 45.0%
!! AAGTTCTAAGCAGGAGGTCT+AGG + Chr3:96236036-96236055 None:intergenic 45.0%
!! ACCCCAAAGAAGTTCTAAGC+AGG + Chr3:96236045-96236064 None:intergenic 45.0%
!! AGTTCTAAGCAGGAGGTCTA+GGG + Chr3:96236035-96236054 None:intergenic 45.0%
!! CCAAAGAAGTTCTAAGCAGG+AGG + Chr3:96236042-96236061 None:intergenic 45.0%
!! GACTAAACACTGATTCGCGA+CGG + Chr3:96234846-96234865 None:intergenic 45.0%
!! TTTGTTTTTCGTGGAGGGGT+GGG + Chr3:96233752-96233771 None:intergenic 45.0%
!!! TAGAGGTTTTGAGAGCGAGA+AGG + Chr3:96234932-96234951 None:intergenic 45.0%
!!! TTTTGTTTTTCGTGGAGGGG+TGG + Chr3:96233753-96233772 None:intergenic 45.0%
AAAGGCTCAACTTGACACGC+TGG - Chr3:96236721-96236740 MsG0380017436.01.T01:intron 50.0%
AAGAGAGAGTTCGCCGTGTA+CGG + Chr3:96233415-96233434 None:intergenic 50.0%
AGAGCGAGAAGGAAGAGTGA+AGG + Chr3:96234921-96234940 None:intergenic 50.0%
AGGCTCAGCATCAGAAGACT+TGG + Chr3:96236530-96236549 None:intergenic 50.0%
CCCCATCTGAAGAGAACTTG+AGG - Chr3:96233437-96233456 MsG0380017436.01.T01:intron 50.0%
CTCAGCATCAGAAGACTTGG+TGG + Chr3:96236527-96236546 None:intergenic 50.0%
CTGCCATGAAAGCTCTATCC+AGG - Chr3:96233558-96233577 MsG0380017436.01.T01:intron 50.0%
CTTTAATCAGGACCCCAACC+TGG + Chr3:96236129-96236148 None:intergenic 50.0%
GGACTCAATGAGTGGATGTC+TGG - Chr3:96233317-96233336 MsG0380017436.01.T01:intron 50.0%
GGTCCCCAATATACCGTACA+CGG - Chr3:96233399-96233418 MsG0380017436.01.T01:intron 50.0%
GTATCACCTGAAACTACGCC+CGG - Chr3:96236581-96236600 MsG0380017436.01.T01:intron 50.0%
GTGATGGTTGACATTGTGGG+AGG + Chr3:96237361-96237380 None:intergenic 50.0%
GTTCGCCGTGTACGGTATAT+TGG + Chr3:96233407-96233426 None:intergenic 50.0%
GTTTGAAGACAAACGTGCCG+AGG - Chr3:96237826-96237845 MsG0380017436.01.T01:intron 50.0%
TAGCCCAAGTGGGAGATTGT+TGG - Chr3:96233123-96233142 MsG0380017436.01.T01:intron 50.0%
TCAAACTTGCACCCCTTGCA+AGG + Chr3:96236276-96236295 None:intergenic 50.0%
TCAGTTTACACCACGGGGAT+GGG + Chr3:96234814-96234833 None:intergenic 50.0%
TCGCCGTGTACGGTATATTG+GGG + Chr3:96233405-96233424 None:intergenic 50.0%
TGGTAAGGAAGACGATGCTC+TGG + Chr3:96237860-96237879 None:intergenic 50.0%
TGTTACAGAGGGGAATGACG+AGG - Chr3:96235138-96235157 MsG0380017436.01.T01:intron 50.0%
TTTCATGGCAGCCCTCTCAA+TGG + Chr3:96233549-96233568 None:intergenic 50.0%
! ACGTGAGTTGGAAGGTGTGT+TGG - Chr3:96235288-96235307 MsG0380017436.01.T01:intron 50.0%
! CAGGTTGGGGTCCTGATTAA+AGG - Chr3:96236127-96236146 MsG0380017436.01.T01:intron 50.0%
! CGTGAGTTGGAAGGTGTGTT+GGG - Chr3:96235289-96235308 MsG0380017436.01.T01:intron 50.0%
! GCTTTAGCTCACGAGGCTTT+AGG + Chr3:96234010-96234029 None:intergenic 50.0%
! TGCAAGGGGTGCAAGTTTGA+AGG - Chr3:96236276-96236295 MsG0380017436.01.T01:intron 50.0%
!! AGCATCAGAAGACTTGGTGG+AGG + Chr3:96236524-96236543 None:intergenic 50.0%
!! AGGCATAAAGGTACCGGTTG+AGG - Chr3:96233457-96233476 MsG0380017436.01.T01:intron 50.0%
!! GCATCAGAAGACTTGGTGGA+GGG + Chr3:96236523-96236542 None:intergenic 50.0%
!!! GGGATGGGGTTTTGAAGGTT+TGG + Chr3:96234799-96234818 None:intergenic 50.0%
AACGTTAGCGGCGGCTGATT+TGG + Chr3:96233488-96233507 None:intergenic 55.0%
AAGACAAACGTGCCGAGGAG+GGG - Chr3:96237831-96237850 MsG0380017436.01.T01:intron 55.0%
CAGTTTACACCACGGGGATG+GGG + Chr3:96234813-96234832 None:intergenic 55.0%
CTCAGTTTACACCACGGGGA+TGG + Chr3:96234815-96234834 None:intergenic 55.0%
GAAGACAAACGTGCCGAGGA+GGG - Chr3:96237830-96237849 MsG0380017436.01.T01:intron 55.0%
GAATCTCCGGGCGTAGTTTC+AGG + Chr3:96236590-96236609 None:intergenic 55.0%
TACAGAGGGGAATGACGAGG+AGG - Chr3:96235141-96235160 MsG0380017436.01.T01:intron 55.0%
TGAAGACAAACGTGCCGAGG+AGG - Chr3:96237829-96237848 MsG0380017436.01.T01:intron 55.0%
AGACAAACGTGCCGAGGAGG+GGG - Chr3:96237832-96237851 MsG0380017436.01.T01:intron 60.0%
CCTTCAAAACCCCATCCCCG+TGG - Chr3:96234801-96234820 MsG0380017436.01.T01:intron 60.0%
GGCAGCCCTCTCAATGGCAA+CGG + Chr3:96233543-96233562 None:intergenic 60.0%
!! ATGCTCTGGAACCCCCTCCT+CGG + Chr3:96237846-96237865 None:intergenic 60.0%
!! CCACGGGGATGGGGTTTTGA+AGG + Chr3:96234804-96234823 None:intergenic 60.0%
GTCAGTGACGACAGCCGCGG+TGG - Chr3:96232994-96233013 MsG0380017436.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 96232992 96237904 96232992 ID=MsG0380017436.01;Name=MsG0380017436.01
Chr3 mRNA 96232992 96237904 96232992 ID=MsG0380017436.01.T01;Parent=MsG0380017436.01;Name=MsG0380017436.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|1|1|4|0|288
Chr3 exon 96237848 96237904 96237848 ID=MsG0380017436.01.T01:exon:17489;Parent=MsG0380017436.01.T01
Chr3 exon 96235422 96235772 96235422 ID=MsG0380017436.01.T01:exon:17488;Parent=MsG0380017436.01.T01
Chr3 exon 96234121 96234438 96234121 ID=MsG0380017436.01.T01:exon:17487;Parent=MsG0380017436.01.T01
Chr3 exon 96232992 96233132 96232992 ID=MsG0380017436.01.T01:exon:17486;Parent=MsG0380017436.01.T01
Chr3 CDS 96237848 96237904 96237848 ID=MsG0380017436.01.T01:cds;Parent=MsG0380017436.01.T01
Chr3 CDS 96235422 96235772 96235422 ID=MsG0380017436.01.T01:cds;Parent=MsG0380017436.01.T01
Chr3 CDS 96234121 96234438 96234121 ID=MsG0380017436.01.T01:cds;Parent=MsG0380017436.01.T01
Chr3 CDS 96232992 96233132 96232992 ID=MsG0380017436.01.T01:cds;Parent=MsG0380017436.01.T01
Gene Sequence

>MsG0380017436.01.T01

ATGTCAGTGACGACAGCCGCGGTGGTCCCATTATTAATGTATGAGGTGGACCAGATTAAAAAATTGACTCATGTTACAGAGGGGAATGACGAGGAGGATCCATTTGAGTTGCTTTTCAAACAACTCGAAGATGATCTCAAAAACGATGATGATTTGTCAAAAGAAGATAGCGATGACGACGACGACGACGAGATAAGTGAAGAAAATTTTGCTTTGTTAGAACGTGAGTTGGAAGGTGTGTTGGGTGAATTTGATGCTGAATTGTTGAACACAGATATCAGCGAAACACAAGGTGATAATGATGTAGAAAAAAGTAGTGGCGATGGAAATGATAATTCGCTGAAGCTTAGAACTTGGCAATTGAATACATTGGCTAGAGCATTGAAAACTGGACGCCGCAAACTAAGTATAAAAGCTCTTGCTGCCGAGCTCTGTCTTGATAGAGCTCTTGTTCTTGATTTGCTTCGTAACCCTCCACCAAGTCTTCTGATGCTGAGCCTATCGATTCCTGATGAACCTAAACCATCAGCAGTATCACCTGAAACTACGCCCGGAGATTCTTTTCATAAAGAAACAAGTGCAGATCATGCTCATGCAGAATCTGGACCGAAGAAGTCTAACTTACCTATTCATGACATGCAACAGAATTGGTCTTCTCGAAAGAGATTGAAAAAGGCTCAACTTGACACGCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATTAGTAATATTGTGCATGTTTCAAACATTCCGCGGAGAACAGTTATTAAGTGGTTTGAAGACAAACGTGCCGAGGAGGGGGTTCCAGAGCATCGTCTTCCTTACCAGCAGTCTGCTAATGAAACAAGTTGA

Protein sequence

>MsG0380017436.01.T01

MSVTTAAVVPLLMYEVDQIKKLTHVTEGNDEEDPFELLFKQLEDDLKNDDDLSKEDSDDDDDDEISEENFALLERELEGVLGEFDAELLNTDISETQGDNDVEKSSGDGNDNSLKLRTWQLNTLARALKTGRRKLSIKALAAELCLDRALVLDLLRNPPPSLLMLSLSIPDEPKPSAVSPETTPGDSFHKETSADHAHAESGPKKSNLPIHDMQQNWSSRKRLKKAQLDTLERVYMRSKRPTNAMISNIVHVSNIPRRTVIKWFEDKRAEEGVPEHRLPYQQSANETS*