AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016172.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016172.01.T01 MTR_3g084950 94.215 363 16 2 1 363 1 358 0.0 661
MsG0380016172.01.T01 MTR_8g097190 71.304 345 87 3 22 363 29 364 0.0 524
MsG0380016172.01.T01 MTR_8g097190 62.753 247 80 3 22 265 29 266 4.12e-110 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016172.01.T01 AT1G10830 76.897 290 67 0 74 363 78 367 1.31e-177 498
MsG0380016172.01.T01 AT1G10830 73.936 188 49 0 74 261 78 265 6.10e-103 305
MsG0380016172.01.T01 AT1G10830 74.545 110 28 0 74 183 78 187 1.26e-52 174

Find 87 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCTAAAAGATTAA+AGG 0.126652 3:-79977304 None:intergenic
GATTTATTTCGCCGCAATTT+TGG 0.154342 3:+79976243 MsG0380016172.01.T01:CDS
TTAATTTCACATCATCTATT+TGG 0.187467 3:+79977850 MsG0380016172.01.T01:CDS
CATTACCCATTCTTCAATAA+AGG 0.261188 3:+79976150 MsG0380016172.01.T01:CDS
AAACCGCAAATATGAGAATT+AGG 0.277606 3:-79976905 None:intergenic
GGTGTCTTGCTCATACAATT+TGG 0.284942 3:+79977791 MsG0380016172.01.T01:CDS
TATGAGGAGCGTTGAGAAGT+AGG 0.327710 3:-79976064 None:intergenic
AATGCAGTAATTACTAAGTA+TGG 0.338106 3:-79978021 None:intergenic
GTGGCTGTTGCAGCTTCAAT+TGG 0.349115 3:+79977826 MsG0380016172.01.T01:CDS
AGATGGTTGGTCAGGTAATC+TGG 0.354286 3:+79977770 MsG0380016172.01.T01:intron
TGCTGTTCAGATGGTTGGTC+AGG 0.355164 3:+79977762 MsG0380016172.01.T01:intron
GAGCGTTGAGAAGTAGGTTT+TGG 0.361636 3:-79976058 None:intergenic
CACATCATCTATTTGGTGCT+TGG 0.366412 3:+79977857 MsG0380016172.01.T01:CDS
AAAATACATCTATATGAAAC+TGG 0.374022 3:+79977342 MsG0380016172.01.T01:CDS
TCTCTCACAGGTTCAACTTC+AGG 0.382575 3:+79976125 MsG0380016172.01.T01:CDS
CGGAACAGAAAATAACTTCA+TGG 0.384156 3:+79976221 MsG0380016172.01.T01:CDS
TTTATTAATCACAGATATGA+TGG 0.389024 3:+79977189 MsG0380016172.01.T01:CDS
CCATCAAGGATTGCTGCAAA+AGG 0.390457 3:-79977952 None:intergenic
ATTGATAACTCAACTGGCTT+TGG 0.394276 3:+79976298 MsG0380016172.01.T01:CDS
GATCCTAATTCTCATATTTG+CGG 0.403823 3:+79976902 MsG0380016172.01.T01:CDS
GAAAATAAAATAGAAATGAT+TGG 0.405818 3:+79978223 MsG0380016172.01.T01:three_prime_UTR
CTTGCTCATACAATTTGGAT+TGG 0.409860 3:+79977796 MsG0380016172.01.T01:CDS
TCTAAAAGATTAAAGGTTGA+AGG 0.413154 3:-79977297 None:intergenic
TCATGTAAAATCTAATGTAT+AGG 0.422428 3:+79978133 MsG0380016172.01.T01:three_prime_UTR
TCTTCATTCTAAATGTGGTA+TGG 0.429366 3:+79976275 MsG0380016172.01.T01:CDS
AACAAAGATGGGTGATGGGT+TGG 0.432814 3:-79976004 None:intergenic
TTGCTCATACAATTTGGATT+GGG 0.435090 3:+79977797 MsG0380016172.01.T01:CDS
GGAATATGAAATGGAATAAG+AGG 0.440648 3:-79976032 None:intergenic
AAACTAGCAGCCTGCATAAG+AGG 0.442374 3:-79978069 None:intergenic
CTTTGCACACCCTCTTATGC+AGG 0.452520 3:+79978059 MsG0380016172.01.T01:CDS
GATTAAAGGTTGAAGGATAT+AGG 0.458002 3:-79977290 None:intergenic
TAAGAGGGAGAGAACAAAGA+TGG 0.458636 3:-79976016 None:intergenic
ATGGCTAGCCTACGGAATAC+TGG 0.465850 3:+79976939 MsG0380016172.01.T01:CDS
GTATGGATTGATAACTCAAC+TGG 0.468553 3:+79976292 MsG0380016172.01.T01:CDS
CATCTATTTGGTGCTTGGAA+TGG 0.469784 3:+79977862 MsG0380016172.01.T01:CDS
GATTAATACCTGTGGATGCC+TGG 0.472549 3:-79977379 None:intergenic
AATACTGGTGAGAAAATCAT+TGG 0.476132 3:+79976954 MsG0380016172.01.T01:CDS
GATGAATCCCCGGAGTACTC+TGG 0.479621 3:-79977230 None:intergenic
TGGCAGCTCCAGAGTACTCC+GGG 0.483611 3:+79977222 MsG0380016172.01.T01:CDS
CAACAATACCTCGTGAGAAT+CGG 0.485418 3:-79976353 None:intergenic
ATTTGGAGATGAGAAGTATG+AGG 0.486179 3:-79976080 None:intergenic
AAGAGGGAGAGAACAAAGAT+GGG 0.490152 3:-79976015 None:intergenic
CTGCTAGTTTCAACCTCCAT+TGG 0.497102 3:+79978082 MsG0380016172.01.T01:CDS
GAGAGAACAAAGATGGGTGA+TGG 0.501885 3:-79976009 None:intergenic
TTGGTGCTTGGAATGGAGAT+AGG 0.502563 3:+79977869 MsG0380016172.01.T01:CDS
AATCCGCAGGTAATCTTTGA+CGG 0.502619 3:-79977975 None:intergenic
AACCTGTGAGAGAGAGATAG+TGG 0.513143 3:-79976115 None:intergenic
TTTAGTTTAGTTGAAGGACT+TGG 0.513559 3:-79975944 None:intergenic
GGTTCTCTTCATTCTAAATG+TGG 0.519664 3:+79976270 MsG0380016172.01.T01:CDS
CATCAAGGATTGCTGCAAAA+GGG 0.524831 3:-79977951 None:intergenic
ATTTCCTTTCCACCTACCAA+TGG 0.531822 3:-79978098 None:intergenic
ACAATAGTAGTGACAGCTAA+AGG 0.535492 3:-79977017 None:intergenic
ACCTCCATTGGTAGGTGGAA+AGG 0.536645 3:+79978094 MsG0380016172.01.T01:exon
ATTACCTGCGGATTTCTACA+AGG 0.539323 3:+79977984 MsG0380016172.01.T01:CDS
TAGTTTCAACCTCCATTGGT+AGG 0.542093 3:+79978086 MsG0380016172.01.T01:CDS
TCTTGGTGACTAGAAGTTGT+GGG 0.542096 3:+79975885 None:intergenic
CACAGAAGTTGATGAATCCC+CGG 0.546615 3:-79977240 None:intergenic
GTAATCTTTGACGGCCATCA+AGG 0.548368 3:-79977966 None:intergenic
AGAGAACAAAGATGGGTGAT+GGG 0.548569 3:-79976008 None:intergenic
AACTCCTTGTAGAAATCCGC+AGG 0.550585 3:-79977988 None:intergenic
AAGAATAACCAGGCATCCAC+AGG 0.553400 3:+79977371 MsG0380016172.01.T01:CDS
CTCTTGGTGACTAGAAGTTG+TGG 0.553988 3:+79975884 None:intergenic
CGGGGATTCATCAACTTCTG+TGG 0.555871 3:+79977241 MsG0380016172.01.T01:CDS
TGCATCAATAGACAGGTCAC+AGG 0.556244 3:+79978186 MsG0380016172.01.T01:three_prime_UTR
TGTAGTGTGCATCAATAGAC+AGG 0.558110 3:+79978179 MsG0380016172.01.T01:three_prime_UTR
TCCTTTCCACCTACCAATGG+AGG 0.559081 3:-79978095 None:intergenic
GATATGATGGAATTCAACTC+TGG 0.560955 3:+79977202 MsG0380016172.01.T01:CDS
CTGGCAGCTCCAGAGTACTC+CGG 0.564920 3:+79977221 MsG0380016172.01.T01:CDS
GAATATGAAATGGAATAAGA+GGG 0.569325 3:-79976031 None:intergenic
AACCACTATCTCTCTCTCAC+AGG 0.578529 3:+79976113 MsG0380016172.01.T01:CDS
AACTAGCAGCCTGCATAAGA+GGG 0.580769 3:-79978068 None:intergenic
GTAATTACTGCATTAACACT+AGG 0.589570 3:+79978030 MsG0380016172.01.T01:CDS
AGAAGCAGAGAGTATAAGAG+AGG 0.598033 3:-79975975 None:intergenic
CTGGCATCATAAGAATAACC+AGG 0.600338 3:+79977361 MsG0380016172.01.T01:CDS
TTCCGTTAAACTAAAAGCTG+CGG 0.611809 3:-79976203 None:intergenic
TTTCAACCTCCATTGGTAGG+TGG 0.613440 3:+79978089 MsG0380016172.01.T01:exon
ACAGTGGCATGGCTAGCCTA+CGG 0.614954 3:+79976931 MsG0380016172.01.T01:CDS
AGGCGATTAGCTCAAAGACA+TGG 0.626170 3:+79977889 MsG0380016172.01.T01:CDS
GAGAACCACACCCAAAATTG+CGG 0.633481 3:-79976254 None:intergenic
AGGGCTCTCCGATTCTCACG+AGG 0.645915 3:+79976345 MsG0380016172.01.T01:CDS
GCATCAATAGACAGGTCACA+GGG 0.660266 3:+79978187 MsG0380016172.01.T01:three_prime_UTR
TGGTGACTAGAAGTTGTGGG+TGG 0.660340 3:+79975888 None:intergenic
TGGCCGTCAAAGATTACCTG+CGG 0.666868 3:+79977972 MsG0380016172.01.T01:CDS
AATTTGGATTGGGAATTCTG+TGG 0.685087 3:+79977807 MsG0380016172.01.T01:CDS
TTGATGCACACTACAGCACG+TGG 0.701313 3:-79978171 None:intergenic
GGCAGCTCCAGAGTACTCCG+GGG 0.727870 3:+79977223 MsG0380016172.01.T01:CDS
GTAGGCTAGCCATGCCACTG+TGG 0.748430 3:-79976929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAAAATAGAAATGAT+TGG + Chr3:79978223-79978242 MsG0380016172.01.T01:three_prime_UTR 15.0%
!! TTAACATTTCAATATGATAA+CGG + Chr3:79977111-79977130 MsG0380016172.01.T01:intron 15.0%
!! AAAATACATCTATATGAAAC+TGG + Chr3:79977342-79977361 MsG0380016172.01.T01:CDS 20.0%
!! ATAAACTCTTGGAAAATTTA+TGG + Chr3:79976514-79976533 MsG0380016172.01.T01:intron 20.0%
!! TCATGTAAAATCTAATGTAT+AGG + Chr3:79978133-79978152 MsG0380016172.01.T01:three_prime_UTR 20.0%
!! TCTTAATAGATACAGATATA+AGG - Chr3:79977566-79977585 None:intergenic 20.0%
!! TTAATTTCACATCATCTATT+TGG + Chr3:79977850-79977869 MsG0380016172.01.T01:CDS 20.0%
!! TTTATTAATCACAGATATGA+TGG + Chr3:79977189-79977208 MsG0380016172.01.T01:CDS 20.0%
!!! AAATTTGAAACGATTGTTAA+TGG - Chr3:79976400-79976419 None:intergenic 20.0%
!!! AATTATATGTTGTTTCTCTT+TGG - Chr3:79976653-79976672 None:intergenic 20.0%
!!! GTTTCATATAGATGTATTTT+AGG - Chr3:79977342-79977361 None:intergenic 20.0%
!!! TGCAATTTCTAAAAGATTAA+AGG - Chr3:79977307-79977326 None:intergenic 20.0%
!!! TTTTTCCTTTATTGAAGAAT+GGG - Chr3:79976158-79976177 None:intergenic 20.0%
! AATGCAGTAATTACTAAGTA+TGG - Chr3:79978024-79978043 None:intergenic 25.0%
! ACAAATTTATCACGTATTTG+AGG - Chr3:79977647-79977666 None:intergenic 25.0%
! ACTCTATACCAATAAGTTTA+TGG + Chr3:79977407-79977426 MsG0380016172.01.T01:intron 25.0%
! ATGATTAGGAGAAAAGATAT+GGG - Chr3:79977059-79977078 None:intergenic 25.0%
! ATGTCTATCCATAAACTTAT+TGG - Chr3:79977418-79977437 None:intergenic 25.0%
! GAAAAAGAAAGAGATGAAAT+TGG - Chr3:79977271-79977290 None:intergenic 25.0%
! GAATATGAAATGGAATAAGA+GGG - Chr3:79976034-79976053 None:intergenic 25.0%
! TATGATTAGGAGAAAAGATA+TGG - Chr3:79977060-79977079 None:intergenic 25.0%
! TCCTTCAACTAAACTAAAAA+TGG + Chr3:79975949-79975968 MsG0380016172.01.T01:exon 25.0%
! TCTAAAAGATTAAAGGTTGA+AGG - Chr3:79977300-79977319 None:intergenic 25.0%
! TGAGATTTCAAGATAAAATC+AGG - Chr3:79976776-79976795 None:intergenic 25.0%
! TTAGACACATTTCTTTCATT+TGG + Chr3:79977709-79977728 MsG0380016172.01.T01:intron 25.0%
! TTCAAGATAAAATCAGGTTT+GGG - Chr3:79976770-79976789 None:intergenic 25.0%
! TTTCAAGATAAAATCAGGTT+TGG - Chr3:79976771-79976790 None:intergenic 25.0%
!! CTTTTTCCTTTATTGAAGAA+TGG - Chr3:79976159-79976178 None:intergenic 25.0%
!! TCTAATATTTTGTCGTAAGA+AGG + Chr3:79977492-79977511 MsG0380016172.01.T01:intron 25.0%
!!! AGTGGTTTTGAATTTGAATT+TGG - Chr3:79976100-79976119 None:intergenic 25.0%
!!! GCTCATTTGTTATTTATGTT+AGG + Chr3:79976436-79976455 MsG0380016172.01.T01:intron 25.0%
!!! TCAATATGATAACGGTTTAA+CGG + Chr3:79977119-79977138 MsG0380016172.01.T01:intron 25.0%
!!! TCGAAATATGTGATTTTGAT+GGG + Chr3:79976717-79976736 MsG0380016172.01.T01:intron 25.0%
!!! TTTCTATTTAGAAGAGCATT+TGG - Chr3:79977670-79977689 None:intergenic 25.0%
!!! TTTTGGTTTGGAATATGAAA+TGG - Chr3:79976044-79976063 None:intergenic 25.0%
AAACCGCAAATATGAGAATT+AGG - Chr3:79976908-79976927 None:intergenic 30.0%
AAATCAATTCTGATACTCTC+TGG - Chr3:79976691-79976710 None:intergenic 30.0%
AATACTGGTGAGAAAATCAT+TGG + Chr3:79976954-79976973 MsG0380016172.01.T01:CDS 30.0%
AGATTGTTTGAGTGAACTTA+TGG - Chr3:79976568-79976587 None:intergenic 30.0%
AGCATTTCGCTTATATGATT+AGG - Chr3:79977073-79977092 None:intergenic 30.0%
AGGATATAATGTTACTCTTG+AGG - Chr3:79977614-79977633 None:intergenic 30.0%
AGTGTTAAGATTAATACCTG+TGG - Chr3:79977390-79977409 None:intergenic 30.0%
ATAAAATCAGGTTTGGGTAT+TGG - Chr3:79976764-79976783 None:intergenic 30.0%
CATTACCCATTCTTCAATAA+AGG + Chr3:79976150-79976169 MsG0380016172.01.T01:CDS 30.0%
GAAATGTGTCTAAATAGAGA+AGG - Chr3:79977702-79977721 None:intergenic 30.0%
GATCCTAATTCTCATATTTG+CGG + Chr3:79976902-79976921 MsG0380016172.01.T01:CDS 30.0%
GATTAAAGGTTGAAGGATAT+AGG - Chr3:79977293-79977312 None:intergenic 30.0%
GGAATATGAAATGGAATAAG+AGG - Chr3:79976035-79976054 None:intergenic 30.0%
GTAATTACTGCATTAACACT+AGG + Chr3:79978030-79978049 MsG0380016172.01.T01:CDS 30.0%
TCTTCATTCTAAATGTGGTA+TGG + Chr3:79976275-79976294 MsG0380016172.01.T01:CDS 30.0%
TGTTAATGGTGAAGTGAAAA+GGG - Chr3:79976386-79976405 None:intergenic 30.0%
TTGCTCATACAATTTGGATT+GGG + Chr3:79977797-79977816 MsG0380016172.01.T01:CDS 30.0%
TTGTTAATGGTGAAGTGAAA+AGG - Chr3:79976387-79976406 None:intergenic 30.0%
! ATGGATAGACATGATTTTTG+TGG + Chr3:79977426-79977445 MsG0380016172.01.T01:intron 30.0%
! ATTTATTTCGCCGCAATTTT+GGG + Chr3:79976244-79976263 MsG0380016172.01.T01:CDS 30.0%
! CTCGAAATATGTGATTTTGA+TGG + Chr3:79976716-79976735 MsG0380016172.01.T01:intron 30.0%
! GCGAAATGCTTTACTTATTT+TGG + Chr3:79977083-79977102 MsG0380016172.01.T01:intron 30.0%
! TGATTTTTCATCTATGATGC+AGG + Chr3:79977161-79977180 MsG0380016172.01.T01:intron 30.0%
! TTTAGTTTAGTTGAAGGACT+TGG - Chr3:79975947-79975966 None:intergenic 30.0%
!! AAGCTGTTTTCATAAACTCT+TGG + Chr3:79976503-79976522 MsG0380016172.01.T01:intron 30.0%
!! GATTTTGATGGGAAAAATAC+TGG + Chr3:79976728-79976747 MsG0380016172.01.T01:intron 30.0%
!!! GCCATTTTTAGTTTAGTTGA+AGG - Chr3:79975953-79975972 None:intergenic 30.0%
ACAATAGTAGTGACAGCTAA+AGG - Chr3:79977020-79977039 None:intergenic 35.0%
CGGAACAGAAAATAACTTCA+TGG + Chr3:79976221-79976240 MsG0380016172.01.T01:CDS 35.0%
CTTGCTCATACAATTTGGAT+TGG + Chr3:79977796-79977815 MsG0380016172.01.T01:CDS 35.0%
GGTTCTCTTCATTCTAAATG+TGG + Chr3:79976270-79976289 MsG0380016172.01.T01:CDS 35.0%
TTCCGTTAAACTAAAAGCTG+CGG - Chr3:79976206-79976225 None:intergenic 35.0%
! AATTTGGATTGGGAATTCTG+TGG + Chr3:79977807-79977826 MsG0380016172.01.T01:CDS 35.0%
! ATTGATAACTCAACTGGCTT+TGG + Chr3:79976298-79976317 MsG0380016172.01.T01:CDS 35.0%
! ATTTGGAGATGAGAAGTATG+AGG - Chr3:79976083-79976102 None:intergenic 35.0%
! GATATGATGGAATTCAACTC+TGG + Chr3:79977202-79977221 MsG0380016172.01.T01:CDS 35.0%
! GATTTATTTCGCCGCAATTT+TGG + Chr3:79976243-79976262 MsG0380016172.01.T01:CDS 35.0%
! GTATGGATTGATAACTCAAC+TGG + Chr3:79976292-79976311 MsG0380016172.01.T01:CDS 35.0%
! GTATTTGAGGATGTTTTACG+AGG - Chr3:79977634-79977653 None:intergenic 35.0%
! TCATTGGTGAAAGAGCTTTT+CGG + Chr3:79976970-79976989 MsG0380016172.01.T01:CDS 35.0%
!! ATGTTGTTTCTCTTTGGCTA+TGG - Chr3:79976647-79976666 None:intergenic 35.0%
!! TGTTGTTTCTCTTTGGCTAT+GGG - Chr3:79976646-79976665 None:intergenic 35.0%
!!! CTTTTCGGGTTATTTTTGCA+GGG + Chr3:79976985-79977004 MsG0380016172.01.T01:CDS 35.0%
!!! CTTTTGTTGATGCTGTTTCA+GGG + Chr3:79976326-79976345 MsG0380016172.01.T01:CDS 35.0%
!!! GATTTGTTTTGCTGTTCAGA+TGG + Chr3:79977753-79977772 MsG0380016172.01.T01:intron 35.0%
!!! TTGAGAAGTAGGTTTTGGTT+TGG - Chr3:79976056-79976075 None:intergenic 35.0%
AAGAGGGAGAGAACAAAGAT+GGG - Chr3:79976018-79976037 None:intergenic 40.0%
AATCCGCAGGTAATCTTTGA+CGG - Chr3:79977978-79977997 None:intergenic 40.0%
AGAGAACAAAGATGGGTGAT+GGG - Chr3:79976011-79976030 None:intergenic 40.0%
ATTACCTGCGGATTTCTACA+AGG + Chr3:79977984-79978003 MsG0380016172.01.T01:CDS 40.0%
ATTTCCTTTCCACCTACCAA+TGG - Chr3:79978101-79978120 None:intergenic 40.0%
CAACAATACCTCGTGAGAAT+CGG - Chr3:79976356-79976375 None:intergenic 40.0%
CATCAAGGATTGCTGCAAAA+GGG - Chr3:79977954-79977973 None:intergenic 40.0%
CTGGCATCATAAGAATAACC+AGG + Chr3:79977361-79977380 MsG0380016172.01.T01:CDS 40.0%
GGTGTCTTGCTCATACAATT+TGG + Chr3:79977791-79977810 MsG0380016172.01.T01:CDS 40.0%
TAAGAGGGAGAGAACAAAGA+TGG - Chr3:79976019-79976038 None:intergenic 40.0%
TAGTTTCAACCTCCATTGGT+AGG + Chr3:79978086-79978105 MsG0380016172.01.T01:CDS 40.0%
TGTAGTGTGCATCAATAGAC+AGG + Chr3:79978179-79978198 MsG0380016172.01.T01:three_prime_UTR 40.0%
! ACTCTTGAGGATGTTTTACG+AGG - Chr3:79977601-79977620 None:intergenic 40.0%
! AGAAGCAGAGAGTATAAGAG+AGG - Chr3:79975978-79975997 None:intergenic 40.0%
! ATATTTGCGGTTTTCCACAG+TGG + Chr3:79976915-79976934 MsG0380016172.01.T01:CDS 40.0%
! CATTGGTGAAAGAGCTTTTC+GGG + Chr3:79976971-79976990 MsG0380016172.01.T01:CDS 40.0%
! GTTTCAATTGCTCTGAGTGA+AGG + Chr3:79977731-79977750 MsG0380016172.01.T01:intron 40.0%
! TTTTCTCACCAGTATTCCGT+AGG - Chr3:79976950-79976969 None:intergenic 40.0%
!! CACATCATCTATTTGGTGCT+TGG + Chr3:79977857-79977876 MsG0380016172.01.T01:CDS 40.0%
!! CATCTATTTGGTGCTTGGAA+TGG + Chr3:79977862-79977881 MsG0380016172.01.T01:CDS 40.0%
!! CTGCATTAGTCGTTGATTTG+TGG + Chr3:79976842-79976861 MsG0380016172.01.T01:intron 40.0%
!!! CTCCGCAGCTTTTAGTTTAA+CGG + Chr3:79976201-79976220 MsG0380016172.01.T01:CDS 40.0%
!!! GCTTTTCGGGTTATTTTTGC+AGG + Chr3:79976984-79977003 MsG0380016172.01.T01:CDS 40.0%
!!! GCTTTTGTTGATGCTGTTTC+AGG + Chr3:79976325-79976344 MsG0380016172.01.T01:CDS 40.0%
!!! TGTTTTGCTGTTCAGATGGT+TGG + Chr3:79977757-79977776 MsG0380016172.01.T01:intron 40.0%
AAACTAGCAGCCTGCATAAG+AGG - Chr3:79978072-79978091 None:intergenic 45.0%
AACCACTATCTCTCTCTCAC+AGG + Chr3:79976113-79976132 MsG0380016172.01.T01:CDS 45.0%
AACCTGTGAGAGAGAGATAG+TGG - Chr3:79976118-79976137 None:intergenic 45.0%
AACTAGCAGCCTGCATAAGA+GGG - Chr3:79978071-79978090 None:intergenic 45.0%
AACTCCTTGTAGAAATCCGC+AGG - Chr3:79977991-79978010 None:intergenic 45.0%
AAGAATAACCAGGCATCCAC+AGG + Chr3:79977371-79977390 MsG0380016172.01.T01:CDS 45.0%
ACCTGCAGAGTAACATGTCA+AGG - Chr3:79976873-79976892 None:intergenic 45.0%
CCATCAAGGATTGCTGCAAA+AGG - Chr3:79977955-79977974 None:intergenic 45.0%
CCTGCAGAGTAACATGTCAA+GGG - Chr3:79976872-79976891 None:intergenic 45.0%
GAAAAAGACTCGAGCTTCGT+GGG + Chr3:79976172-79976191 MsG0380016172.01.T01:CDS 45.0%
GAGAACCACACCCAAAATTG+CGG - Chr3:79976257-79976276 None:intergenic 45.0%
GAGAGAACAAAGATGGGTGA+TGG - Chr3:79976012-79976031 None:intergenic 45.0%
GATTAATACCTGTGGATGCC+TGG - Chr3:79977382-79977401 None:intergenic 45.0%
GCATCAATAGACAGGTCACA+GGG + Chr3:79978187-79978206 MsG0380016172.01.T01:three_prime_UTR 45.0%
GTAATCTTTGACGGCCATCA+AGG - Chr3:79977969-79977988 None:intergenic 45.0%
TCTCTCACAGGTTCAACTTC+AGG + Chr3:79976125-79976144 MsG0380016172.01.T01:CDS 45.0%
TGCATCAATAGACAGGTCAC+AGG + Chr3:79978186-79978205 MsG0380016172.01.T01:three_prime_UTR 45.0%
TTGACATGTTACTCTGCAGG+TGG + Chr3:79976872-79976891 MsG0380016172.01.T01:intron 45.0%
TTTCAACCTCCATTGGTAGG+TGG + Chr3:79978089-79978108 MsG0380016172.01.T01:exon 45.0%
! AGATGGTTGGTCAGGTAATC+TGG + Chr3:79977770-79977789 MsG0380016172.01.T01:intron 45.0%
! AGGCGATTAGCTCAAAGACA+TGG + Chr3:79977889-79977908 MsG0380016172.01.T01:CDS 45.0%
! CCTTTTGCAGCAATCCTTGA+TGG + Chr3:79977952-79977971 MsG0380016172.01.T01:CDS 45.0%
! CTGCTAGTTTCAACCTCCAT+TGG + Chr3:79978082-79978101 MsG0380016172.01.T01:CDS 45.0%
! TTGGTGCTTGGAATGGAGAT+AGG + Chr3:79977869-79977888 MsG0380016172.01.T01:CDS 45.0%
!! AACAAAGATGGGTGATGGGT+TGG - Chr3:79976007-79976026 None:intergenic 45.0%
!! CACAGAAGTTGATGAATCCC+CGG - Chr3:79977243-79977262 None:intergenic 45.0%
!! TATGAGGAGCGTTGAGAAGT+AGG - Chr3:79976067-79976086 None:intergenic 45.0%
!!! GAGCGTTGAGAAGTAGGTTT+TGG - Chr3:79976061-79976080 None:intergenic 45.0%
ACCTCCATTGGTAGGTGGAA+AGG + Chr3:79978094-79978113 MsG0380016172.01.T01:exon 50.0%
CCCTTGACATGTTACTCTGC+AGG + Chr3:79976869-79976888 MsG0380016172.01.T01:intron 50.0%
CGGGGATTCATCAACTTCTG+TGG + Chr3:79977241-79977260 MsG0380016172.01.T01:CDS 50.0%
CTTTGCACACCCTCTTATGC+AGG + Chr3:79978059-79978078 MsG0380016172.01.T01:CDS 50.0%
GGAAAAAGACTCGAGCTTCG+TGG + Chr3:79976171-79976190 MsG0380016172.01.T01:CDS 50.0%
GTGGCTGTTGCAGCTTCAAT+TGG + Chr3:79977826-79977845 MsG0380016172.01.T01:CDS 50.0%
TCCTTTCCACCTACCAATGG+AGG - Chr3:79978098-79978117 None:intergenic 50.0%
TGGCCGTCAAAGATTACCTG+CGG + Chr3:79977972-79977991 MsG0380016172.01.T01:CDS 50.0%
TTGATGCACACTACAGCACG+TGG - Chr3:79978174-79978193 None:intergenic 50.0%
! TGCTGTTCAGATGGTTGGTC+AGG + Chr3:79977762-79977781 MsG0380016172.01.T01:intron 50.0%
!! ATGGCTAGCCTACGGAATAC+TGG + Chr3:79976939-79976958 MsG0380016172.01.T01:CDS 50.0%
!! TTTCGCCGCAATTTTGGGTG+TGG + Chr3:79976249-79976268 MsG0380016172.01.T01:CDS 50.0%
! GATGAATCCCCGGAGTACTC+TGG - Chr3:79977233-79977252 None:intergenic 55.0%
! TGCGGTTTTCCACAGTGGCA+TGG + Chr3:79976920-79976939 MsG0380016172.01.T01:CDS 55.0%
!! ACAGTGGCATGGCTAGCCTA+CGG + Chr3:79976931-79976950 MsG0380016172.01.T01:CDS 55.0%
AGGGCTCTCCGATTCTCACG+AGG + Chr3:79976345-79976364 MsG0380016172.01.T01:CDS 60.0%
! CTGGCAGCTCCAGAGTACTC+CGG + Chr3:79977221-79977240 MsG0380016172.01.T01:CDS 60.0%
! GTAGGCTAGCCATGCCACTG+TGG - Chr3:79976932-79976951 None:intergenic 60.0%
! TGGCAGCTCCAGAGTACTCC+GGG + Chr3:79977222-79977241 MsG0380016172.01.T01:CDS 60.0%
! GGCAGCTCCAGAGTACTCCG+GGG + Chr3:79977223-79977242 MsG0380016172.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79975893 79978256 79975893 ID=MsG0380016172.01;Name=MsG0380016172.01
Chr3 mRNA 79975893 79978256 79975893 ID=MsG0380016172.01.T01;Parent=MsG0380016172.01;Name=MsG0380016172.01.T01;_AED=0.28;_eAED=0.28;_QI=75|1|1|1|1|1|4|149|363
Chr3 exon 79975893 79976366 79975893 ID=MsG0380016172.01.T01:exon:13546;Parent=MsG0380016172.01.T01
Chr3 exon 79976891 79977037 79976891 ID=MsG0380016172.01.T01:exon:13547;Parent=MsG0380016172.01.T01
Chr3 exon 79977183 79977392 79977183 ID=MsG0380016172.01.T01:exon:13548;Parent=MsG0380016172.01.T01
Chr3 exon 79977772 79978256 79977772 ID=MsG0380016172.01.T01:exon:13549;Parent=MsG0380016172.01.T01
Chr3 five_prime_UTR 79975893 79975967 79975893 ID=MsG0380016172.01.T01:five_prime_utr;Parent=MsG0380016172.01.T01
Chr3 CDS 79975968 79976366 79975968 ID=MsG0380016172.01.T01:cds;Parent=MsG0380016172.01.T01
Chr3 CDS 79976891 79977037 79976891 ID=MsG0380016172.01.T01:cds;Parent=MsG0380016172.01.T01
Chr3 CDS 79977183 79977392 79977183 ID=MsG0380016172.01.T01:cds;Parent=MsG0380016172.01.T01
Chr3 CDS 79977772 79978107 79977772 ID=MsG0380016172.01.T01:cds;Parent=MsG0380016172.01.T01
Chr3 three_prime_UTR 79978108 79978256 79978108 ID=MsG0380016172.01.T01:three_prime_utr;Parent=MsG0380016172.01.T01
Gene Sequence

>MsG0380016172.01.T01

ATGGCTGCCTCTCTTATACTCTCTGCTTCTTTCTCTCCAACCCATCACCCATCTTTGTTCTCTCCCTCTTATTCCATTTCATATTCCAAACCAAAACCTACTTCTCAACGCTCCTCATACTTCTCATCTCCAAATTCAAATTCAAAACCACTATCTCTCTCTCACAGGTTCAACTTCAGGCTCATTACCCATTCTTCAATAAAGGAAAAAGACTCGAGCTTCGTGGGAGAAGACTCCGCAGCTTTTAGTTTAACGGAACAGAAAATAACTTCATGGATTTATTTCGCCGCAATTTTGGGTGTGGTTCTCTTCATTCTAAATGTGGTATGGATTGATAACTCAACTGGCTTTGGTAAAGCTTTTGTTGATGCTGTTTCAGGGCTCTCCGATTCTCACGAGGTGGTAATGTTGATCCTAATTCTCATATTTGCGGTTTTCCACAGTGGCATGGCTAGCCTACGGAATACTGGTGAGAAAATCATTGGTGAAAGAGCTTTTCGGGTTATTTTTGCAGGGATATCACTACCTTTAGCTGTCACTACTATTGTGTATTTTATTAATCACAGATATGATGGAATTCAACTCTGGCAGCTCCAGAGTACTCCGGGGATTCATCAACTTCTGTGGCTTTCCAATTTCATCTCTTTCTTTTTCCTATATCCTTCAACCTTTAATCTTTTAGAAATTGCAGCAGTTGACAAGCCTAAAATACATCTATATGAAACTGGCATCATAAGAATAACCAGGCATCCACAGATGGTTGGTCAGGTAATCTGGTGTCTTGCTCATACAATTTGGATTGGGAATTCTGTGGCTGTTGCAGCTTCAATTGGCTTAATTTCACATCATCTATTTGGTGCTTGGAATGGAGATAGGCGATTAGCTCAAAGACATGGAGAAGATTTTGAGATAGTTAAGCGTCGAACAAGTATTGTCCCTTTTGCAGCAATCCTTGATGGCCGTCAAAGATTACCTGCGGATTTCTACAAGGAGTTTATTAGATTACCATACTTAGTAATTACTGCATTAACACTAGGAGCTTACTTTGCACACCCTCTTATGCAGGCTGCTAGTTTCAACCTCCATTGGTAG

Protein sequence

>MsG0380016172.01.T01

MAASLILSASFSPTHHPSLFSPSYSISYSKPKPTSQRSSYFSSPNSNSKPLSLSHRFNFRLITHSSIKEKDSSFVGEDSAAFSLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSHEVVMLILILIFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIVYFINHRYDGIQLWQLQSTPGIHQLLWLSNFISFFFLYPSTFNLLEIAAVDKPKIHLYETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLISHHLFGAWNGDRRLAQRHGEDFEIVKRRTSIVPFAAILDGRQRLPADFYKEFIRLPYLVITALTLGAYFAHPLMQAASFNLHW*