AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004782.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004782.01.T01 MTR_1g086840 83.835 266 26 4 1 255 1 260 8.58e-158 439
MsG0180004782.01.T01 MTR_1g086840 72.368 228 43 6 1 216 1 220 2.82e-105 304
MsG0180004782.01.T01 MTR_7g095920 34.171 199 111 5 49 234 46 237 5.13e-29 110
MsG0180004782.01.T01 MTR_1g471050 33.333 192 114 4 53 234 53 240 1.57e-27 106
MsG0180004782.01.T01 MTR_3g080840 30.172 232 126 8 48 254 43 263 4.34e-26 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004782.01.T01 AT4G01995 55.128 234 84 3 22 244 29 252 1.64e-77 235
MsG0180004782.01.T01 AT4G01995 58.852 209 73 2 47 244 15 221 4.39e-77 233
MsG0180004782.01.T01 AT4G01995 51.145 131 56 1 22 152 29 151 1.40e-31 115
MsG0180004782.01.T01 AT1G64680 32.512 203 109 7 50 231 36 231 8.79e-30 112
MsG0180004782.01.T01 AT1G03055 30.769 234 136 6 14 234 34 254 5.53e-27 105
MsG0180004782.01.T01 AT1G64680 30.337 178 90 7 50 203 36 203 5.79e-19 82.8

Find 88 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGTCACACCTGTGTTTC+TGG 0.163795 1:-82715226 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 1:+82712830 MsG0180004782.01.T01:CDS
GCAGAAGATGCAAACCGTTT+TGG 0.270080 1:-82712912 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 1:+82713054 MsG0180004782.01.T01:CDS
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 1:+82714199 MsG0180004782.01.T01:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 1:-82713288 None:intergenic
TTAGGTTACCTGAACCAATT+TGG 0.303056 1:-82713068 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 1:-82715153 None:intergenic
GACCTTCTTCAAGGATCATA+TGG 0.328100 1:+82714966 MsG0180004782.01.T01:intron
TTAAATTTGCAGTTCAAATT+CGG 0.342169 1:+82715114 MsG0180004782.01.T01:intron
AACCTGTGTTGGAAACTTAC+AGG 0.345038 1:-82714648 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 1:+82713060 MsG0180004782.01.T01:CDS
TCTTCTTCTTCATCTTCATC+AGG 0.361445 1:+82712887 MsG0180004782.01.T01:CDS
GAACTGAAGGCTTGGGTAAT+GGG 0.361682 1:+82715357 MsG0180004782.01.T01:three_prime_UTR
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 1:-82712827 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 1:+82714592 MsG0180004782.01.T01:CDS
AAATGCTTCCCTACGAAGAT+TGG 0.373694 1:+82715200 MsG0180004782.01.T01:CDS
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 1:-82715170 None:intergenic
TAAATATATTGTTAATTCGT+TGG 0.393843 1:+82715448 MsG0180004782.01.T01:three_prime_UTR
CTCCAACTTGTCTTTGAAGA+TGG 0.414710 1:+82715335 MsG0180004782.01.T01:three_prime_UTR
TTAAATTTAGACCTTCTTCA+AGG 0.416665 1:+82714957 MsG0180004782.01.T01:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 1:-82714245 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 1:-82715010 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 1:+82713010 MsG0180004782.01.T01:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 1:+82714256 MsG0180004782.01.T01:CDS
GGAACTGAAGGCTTGGGTAA+TGG 0.446568 1:+82715356 MsG0180004782.01.T01:three_prime_UTR
GAAGATGGAACTGAAGGCTT+GGG 0.449488 1:+82715350 MsG0180004782.01.T01:three_prime_UTR
AATCTTCGTAGGGAAGCATT+TGG 0.450960 1:-82715198 None:intergenic
AACAATATATTTACAGAGAT+GGG 0.452375 1:-82715438 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 1:+82715014 MsG0180004782.01.T01:CDS
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 1:+82715167 MsG0180004782.01.T01:CDS
TAACAATATATTTACAGAGA+TGG 0.468144 1:-82715439 None:intergenic
TTAGTTAAGTTGTTACAGTT+AGG 0.472150 1:+82712766 MsG0180004782.01.T01:five_prime_UTR
CACTAGCTTGTTACGTTCAG+GGG 0.473502 1:-82714332 None:intergenic
TCACTAGCTTGTTACGTTCA+GGG 0.476537 1:-82714333 None:intergenic
TCAATTAGTCCGTCATATCC+AGG 0.477685 1:-82713221 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 1:+82714230 MsG0180004782.01.T01:CDS
GTCTTTGAAGATGGAACTGA+AGG 0.487373 1:+82715344 MsG0180004782.01.T01:three_prime_UTR
ACCTTCTTCAAGGATCATAT+GGG 0.499420 1:+82714967 MsG0180004782.01.T01:CDS
TTCCATCTTCAAAGACAAGT+TGG 0.500129 1:-82715337 None:intergenic
TGAAGATGGAACTGAAGGCT+TGG 0.500254 1:+82715349 MsG0180004782.01.T01:three_prime_UTR
CAGCTATAATCAGCAAAGTT+GGG 0.500940 1:-82715009 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 1:-82715146 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 1:-82713282 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 1:+82712898 MsG0180004782.01.T01:CDS
GGATGGGACTCGAAGAAACC+TGG 0.509195 1:+82713203 MsG0180004782.01.T01:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 1:+82713011 MsG0180004782.01.T01:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 1:-82715147 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 1:-82715180 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 1:+82712797 MsG0180004782.01.T01:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 1:-82715247 None:intergenic
TTGGAGCTAGAATGTGCAAA+AGG 0.526094 1:-82715318 None:intergenic
GAAGAATCACTAACCTGTGT+TGG 0.527314 1:-82714659 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 1:+82712800 MsG0180004782.01.T01:CDS
CTCCGATACCATAGAAGCTA+CGG 0.540098 1:+82713280 MsG0180004782.01.T01:CDS
TATGGGAGTTCCATTACTCA+TGG 0.540166 1:+82714984 MsG0180004782.01.T01:CDS
CTAGAATGTGCAAAAGGCTG+TGG 0.546342 1:-82715312 None:intergenic
TACTATAACAGGAAGTGGGA+TGG 0.548952 1:+82713186 MsG0180004782.01.T01:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 1:-82714209 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 1:-82713051 None:intergenic
TTACAGTTAGGAAGAAATGA+AGG 0.558079 1:+82712778 MsG0180004782.01.T01:exon
TCCCATATGATCCTTGAAGA+AGG 0.562632 1:-82714968 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 1:+82714236 MsG0180004782.01.T01:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 1:-82713253 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 1:-82712833 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 1:+82713182 MsG0180004782.01.T01:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 1:-82714994 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 1:+82713212 MsG0180004782.01.T01:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 1:+82713187 MsG0180004782.01.T01:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 1:+82715155 MsG0180004782.01.T01:CDS
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 1:-82715208 None:intergenic
AACAAATCATCAATAACCCC+AGG 0.586570 1:-82713028 None:intergenic
CACCTGTAAGTTTCCAACAC+AGG 0.597620 1:+82714646 MsG0180004782.01.T01:CDS
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 1:-82715209 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 1:+82714260 MsG0180004782.01.T01:CDS
CTGGAGGAAAGCAAGTGTGT+TGG 0.610904 1:+82714611 MsG0180004782.01.T01:CDS
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 1:-82714206 None:intergenic
TCAAAGATGAATTATCGTTG+TGG 0.625539 1:-82715384 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 1:+82713248 MsG0180004782.01.T01:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 1:+82714233 MsG0180004782.01.T01:CDS
CGAAAGATGCAAGTATCTGG+AGG 0.640761 1:+82714595 MsG0180004782.01.T01:CDS
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 1:-82715145 None:intergenic
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 1:-82715166 None:intergenic
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 1:-82715144 None:intergenic
CGGAGAGTTGAAGTGAAGTG+TGG 0.671551 1:+82712730 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 1:+82715216 MsG0180004782.01.T01:CDS
AGACTCACCAACCATTATAG+CGG 0.701172 1:-82714267 None:intergenic
AAAGAGTGAATACAAGCCTG+GGG 0.716715 1:+82713012 MsG0180004782.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG - Chr1:82714377-82714396 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG + Chr1:82713143-82713162 MsG0180004782.01.T01:intron 15.0%
!! TAAATATATTGTTAATTCGT+TGG + Chr1:82715448-82715467 MsG0180004782.01.T01:three_prime_UTR 15.0%
!! AAAAATATGTTCATGTCTTT+GGG - Chr1:82715254-82715273 None:intergenic 20.0%
!! AAAGCTATAAATAAGTTAAC+TGG - Chr1:82713103-82713122 None:intergenic 20.0%
!! AAATATTACGTATTCTCTTA+TGG + Chr1:82715041-82715060 MsG0180004782.01.T01:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG + Chr1:82713732-82713751 MsG0180004782.01.T01:intron 20.0%
!! AACAATATATTTACAGAGAT+GGG - Chr1:82715441-82715460 None:intergenic 20.0%
!! AAGTTTAGAAGAATCATATA+AGG - Chr1:82714110-82714129 None:intergenic 20.0%
!! AGATTATCAAACTGTTTATA+AGG + Chr1:82713497-82713516 MsG0180004782.01.T01:intron 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG - Chr1:82715113-82715132 None:intergenic 20.0%
!! GAATAAGTAACATTGTATTA+CGG - Chr1:82714012-82714031 None:intergenic 20.0%
!! TAACAATATATTTACAGAGA+TGG - Chr1:82715442-82715461 None:intergenic 20.0%
!! TATAAATAAGTTAACTGGAA+GGG - Chr1:82713098-82713117 None:intergenic 20.0%
!! TATGTACTATAAAATGTTGT+AGG + Chr1:82714565-82714584 MsG0180004782.01.T01:intron 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG + Chr1:82715114-82715133 MsG0180004782.01.T01:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG + Chr1:82713794-82713813 MsG0180004782.01.T01:intron 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG + Chr1:82713796-82713815 MsG0180004782.01.T01:intron 20.0%
!!! ATGTTTTCAATGAATTCATT+CGG - Chr1:82715502-82715521 None:intergenic 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG + Chr1:82713795-82713814 MsG0180004782.01.T01:intron 20.0%
!!! GTTTTGATTGAATTTGAATT+AGG + Chr1:82712970-82712989 MsG0180004782.01.T01:intron 20.0%
!!! TAATACAATGTTACTTATTC+TGG + Chr1:82714012-82714031 MsG0180004782.01.T01:intron 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG + Chr1:82714384-82714403 MsG0180004782.01.T01:intron 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG + Chr1:82714383-82714402 MsG0180004782.01.T01:intron 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG + Chr1:82713120-82713139 MsG0180004782.01.T01:intron 20.0%
! AAAATACTATAACAGGAAGT+GGG + Chr1:82713182-82713201 MsG0180004782.01.T01:intron 25.0%
! ATAAATAAGTTAACTGGAAG+GGG - Chr1:82713097-82713116 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG - Chr1:82714869-82714888 None:intergenic 25.0%
! ATGAATATGATTAATGTGGT+GGG + Chr1:82713147-82713166 MsG0180004782.01.T01:intron 25.0%
! CTATAAATAAGTTAACTGGA+AGG - Chr1:82713099-82713118 None:intergenic 25.0%
! GAAAAATATGTTCATGTCTT+TGG - Chr1:82715255-82715274 None:intergenic 25.0%
! GAGTATGAAAATACTATAAC+AGG + Chr1:82713175-82713194 MsG0180004782.01.T01:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG + Chr1:82715063-82715082 MsG0180004782.01.T01:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG - Chr1:82714868-82714887 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG + Chr1:82713911-82713930 MsG0180004782.01.T01:intron 25.0%
! TATGAATATGATTAATGTGG+TGG + Chr1:82713146-82713165 MsG0180004782.01.T01:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG + Chr1:82714540-82714559 MsG0180004782.01.T01:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG + Chr1:82714114-82714133 MsG0180004782.01.T01:intron 25.0%
! TGATTGAATTTGAATTAGGT+GGG + Chr1:82712974-82712993 MsG0180004782.01.T01:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG + Chr1:82714957-82714976 MsG0180004782.01.T01:intron 25.0%
! TTGATTGAATTTGAATTAGG+TGG + Chr1:82712973-82712992 MsG0180004782.01.T01:intron 25.0%
!! AGACATGAACATATTTTTCT+TGG + Chr1:82715256-82715275 MsG0180004782.01.T01:exon 25.0%
!! GACATGAACATATTTTTCTT+GGG + Chr1:82715257-82715276 MsG0180004782.01.T01:exon 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG + Chr1:82713459-82713478 MsG0180004782.01.T01:intron 25.0%
!! TGTTTTCAATGAATTCATTC+GGG - Chr1:82715501-82715520 None:intergenic 25.0%
!! TTAGTTAAGTTGTTACAGTT+AGG + Chr1:82712766-82712785 MsG0180004782.01.T01:five_prime_UTR 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG - Chr1:82713381-82713400 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG + Chr1:82713119-82713138 MsG0180004782.01.T01:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG - Chr1:82713739-82713758 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG + Chr1:82714913-82714932 MsG0180004782.01.T01:intron 25.0%
!!! TTTTTGAGTTAAGATATCGA+AGG + Chr1:82715531-82715550 MsG0180004782.01.T01:three_prime_UTR 25.0%
GAAAATACTATAACAGGAAG+TGG + Chr1:82713181-82713200 MsG0180004782.01.T01:intron 30.0%
TCAAAGATGAATTATCGTTG+TGG - Chr1:82715387-82715406 None:intergenic 30.0%
TCAGTTAAAGACAAATCGTT+TGG - Chr1:82714820-82714839 None:intergenic 30.0%
TTACAGTTAGGAAGAAATGA+AGG + Chr1:82712778-82712797 MsG0180004782.01.T01:exon 30.0%
! AAGTTGTTGCATTTTATGGA+TGG + Chr1:82714917-82714936 MsG0180004782.01.T01:intron 30.0%
! GTTTTCAATGAATTCATTCG+GGG - Chr1:82715500-82715519 None:intergenic 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG - Chr1:82713960-82713979 None:intergenic 30.0%
AAAATGCTCATAGCTCCTAT+AGG + Chr1:82714230-82714249 MsG0180004782.01.T01:CDS 35.0%
AAATGCAACAACTTCAAAGC+TGG - Chr1:82714911-82714930 None:intergenic 35.0%
AACAAATCATCAATAACCCC+AGG - Chr1:82713031-82713050 None:intergenic 35.0%
AACTCTCAAAACCAAAATGG+TGG - Chr1:82713839-82713858 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG + Chr1:82714451-82714470 MsG0180004782.01.T01:intron 35.0%
ACAGCTATAATCAGCAAAGT+TGG - Chr1:82715013-82715032 None:intergenic 35.0%
ACATGAAAAAACCAAGGGAT+CGG - Chr1:82714863-82714882 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG - Chr1:82714003-82714022 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG + Chr1:82713371-82713390 MsG0180004782.01.T01:intron 35.0%
ACCTTCTTCAAGGATCATAT+GGG + Chr1:82714967-82714986 MsG0180004782.01.T01:CDS 35.0%
AGCTTTACTTTCTCTTGCTA+AGG - Chr1:82713688-82713707 None:intergenic 35.0%
ATTCCATTAGAACAAAGCGT+TGG - Chr1:82712836-82712855 None:intergenic 35.0%
CAGCTATAATCAGCAAAGTT+GGG - Chr1:82715012-82715031 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG - Chr1:82713842-82713861 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG - Chr1:82713291-82713310 None:intergenic 35.0%
GGTATAGATCAGGTATGTTT+GGG + Chr1:82713860-82713879 MsG0180004782.01.T01:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG - Chr1:82713970-82713989 None:intergenic 35.0%
TAGTGCCTTTCATCATTAGA+CGG - Chr1:82713256-82713275 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG + Chr1:82713641-82713660 MsG0180004782.01.T01:intron 35.0%
TCTTCTTCTTCATCTTCATC+AGG + Chr1:82712887-82712906 MsG0180004782.01.T01:CDS 35.0%
TGGTATAGAGTTGAATGAAG+TGG - Chr1:82713975-82713994 None:intergenic 35.0%
TGGTATAGATCAGGTATGTT+TGG + Chr1:82713859-82713878 MsG0180004782.01.T01:intron 35.0%
TTACTGCACTTACTTGTCAA+TGG + Chr1:82714407-82714426 MsG0180004782.01.T01:intron 35.0%
TTAGGTTACCTGAACCAATT+TGG - Chr1:82713071-82713090 None:intergenic 35.0%
TTATAGAGCTCCAAAAGGAA+TGG - Chr1:82714212-82714231 None:intergenic 35.0%
TTCCATCTTCAAAGACAAGT+TGG - Chr1:82715340-82715359 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG + Chr1:82713361-82713380 MsG0180004782.01.T01:intron 35.0%
TTGAGAGTTTGGTATAGATC+AGG + Chr1:82713850-82713869 MsG0180004782.01.T01:intron 35.0%
TTTCAGTCAGGATTTGAACT+CGG + Chr1:82714788-82714807 MsG0180004782.01.T01:intron 35.0%
! AATATGATTAATGTGGTGGG+TGG + Chr1:82713150-82713169 MsG0180004782.01.T01:intron 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG + Chr1:82712830-82712849 MsG0180004782.01.T01:CDS 35.0%
! CAATTTGTTTCGCACCAAAT+TGG + Chr1:82713054-82713073 MsG0180004782.01.T01:CDS 35.0%
! GCAAGAGAAAGTAAAGCTTT+TGG + Chr1:82713690-82713709 MsG0180004782.01.T01:intron 35.0%
! GCATTTTATAGAGCTCCAAA+AGG - Chr1:82714217-82714236 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG + Chr1:82714160-82714179 MsG0180004782.01.T01:intron 35.0%
! TCTACAGAATTGACTTTGCA+GGG - Chr1:82714442-82714461 None:intergenic 35.0%
! TGTTACAGGTACGAATTTTG+AGG + Chr1:82714174-82714193 MsG0180004782.01.T01:intron 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG + Chr1:82714199-82714218 MsG0180004782.01.T01:CDS 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG - Chr1:82713550-82713569 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG - Chr1:82713054-82713073 None:intergenic 35.0%
!! TTAGAACAAAGCGTTGGAAT+TGG - Chr1:82712830-82712849 None:intergenic 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG - Chr1:82713366-82713385 None:intergenic 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG - Chr1:82713375-82713394 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG + Chr1:82713839-82713858 MsG0180004782.01.T01:intron 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG + Chr1:82713800-82713819 MsG0180004782.01.T01:intron 35.0%
AAAGAGTGAATACAAGCCTG+GGG + Chr1:82713012-82713031 MsG0180004782.01.T01:CDS 40.0%
AAAGTTGCCGCTATAATGGT+TGG + Chr1:82714260-82714279 MsG0180004782.01.T01:CDS 40.0%
AAATGCTTCCCTACGAAGAT+TGG + Chr1:82715200-82715219 MsG0180004782.01.T01:CDS 40.0%
AACCTGTGTTGGAAACTTAC+AGG - Chr1:82714651-82714670 None:intergenic 40.0%
ACTATAACAGGAAGTGGGAT+GGG + Chr1:82713187-82713206 MsG0180004782.01.T01:intron 40.0%
ACTTACTTGTCAATGGCTCA+TGG + Chr1:82714414-82714433 MsG0180004782.01.T01:intron 40.0%
AGACTCACCAACCATTATAG+CGG - Chr1:82714270-82714289 None:intergenic 40.0%
AGTCATAAACACACAGCGAA+AGG - Chr1:82714509-82714528 None:intergenic 40.0%
ATATGTTCATGTCTTTGGGC+AGG - Chr1:82715250-82715269 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG - Chr1:82714781-82714800 None:intergenic 40.0%
ATCTTCATCAGGACCCAAAA+CGG + Chr1:82712898-82712917 MsG0180004782.01.T01:CDS 40.0%
ATGGAACCTCATGGAATAGT+GGG + Chr1:82714470-82714489 MsG0180004782.01.T01:intron 40.0%
CAAAGAGTGAATACAAGCCT+GGG + Chr1:82713011-82713030 MsG0180004782.01.T01:CDS 40.0%
CTTACTTGTCAATGGCTCAT+GGG + Chr1:82714415-82714434 MsG0180004782.01.T01:intron 40.0%
GAAGAATCACTAACCTGTGT+TGG - Chr1:82714662-82714681 None:intergenic 40.0%
GACCGAGGGTAACAAAATTA+TGG + Chr1:82714755-82714774 MsG0180004782.01.T01:intron 40.0%
GACCTTCTTCAAGGATCATA+TGG + Chr1:82714966-82714985 MsG0180004782.01.T01:intron 40.0%
GATATCGAAGGAGTTCTATG+TGG + Chr1:82715543-82715562 MsG0180004782.01.T01:three_prime_UTR 40.0%
GCTAACCGTCTAATGATGAA+AGG + Chr1:82713248-82713267 MsG0180004782.01.T01:CDS 40.0%
GGTGTATGTGTATCCAAACA+GGG + Chr1:82713662-82713681 MsG0180004782.01.T01:intron 40.0%
TACCGTAGCTTCTATGGTAT+CGG - Chr1:82713285-82713304 None:intergenic 40.0%
TACTATAACAGGAAGTGGGA+TGG + Chr1:82713186-82713205 MsG0180004782.01.T01:intron 40.0%
TAGATCAGGTATGTTTGGGT+TGG + Chr1:82713864-82713883 MsG0180004782.01.T01:intron 40.0%
TATGGGAGTTCCATTACTCA+TGG + Chr1:82714984-82715003 MsG0180004782.01.T01:CDS 40.0%
TCAAAGAGTGAATACAAGCC+TGG + Chr1:82713010-82713029 MsG0180004782.01.T01:CDS 40.0%
TCAATTAGTCCGTCATATCC+AGG - Chr1:82713224-82713243 None:intergenic 40.0%
TCCCATATGATCCTTGAAGA+AGG - Chr1:82714971-82714990 None:intergenic 40.0%
TCGAAGAAACCTGGATATGA+CGG + Chr1:82713212-82713231 MsG0180004782.01.T01:CDS 40.0%
TGTCGAAAGATGCAAGTATC+TGG + Chr1:82714592-82714611 MsG0180004782.01.T01:CDS 40.0%
TTGGAGCTAGAATGTGCAAA+AGG - Chr1:82715321-82715340 None:intergenic 40.0%
! AAGGCGCTAAGTATTGTTGT+TGG + Chr1:82712797-82712816 MsG0180004782.01.T01:CDS 40.0%
! AAGTGCTAACAAACTTGCTC+TGG - Chr1:82714148-82714167 None:intergenic 40.0%
! CAGAAGATGCAAACCGTTTT+GGG - Chr1:82712914-82712933 None:intergenic 40.0%
! CTCCAACTTGTCTTTGAAGA+TGG + Chr1:82715335-82715354 MsG0180004782.01.T01:three_prime_UTR 40.0%
! CTTTGCTGATTATAGCTGTC+AGG + Chr1:82715014-82715033 MsG0180004782.01.T01:CDS 40.0%
! GATATCTAGAGTTTGACCGA+GGG + Chr1:82714741-82714760 MsG0180004782.01.T01:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG - Chr1:82714760-82714779 None:intergenic 40.0%
! GTCTACAGAATTGACTTTGC+AGG - Chr1:82714443-82714462 None:intergenic 40.0%
! GTCTTTGAAGATGGAACTGA+AGG + Chr1:82715344-82715363 MsG0180004782.01.T01:three_prime_UTR 40.0%
! TTACGGTATGTCTGGAATTG+TGG - Chr1:82713995-82714014 None:intergenic 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG - Chr1:82715201-82715220 None:intergenic 40.0%
!! TCACTAGCTTGTTACGTTCA+GGG - Chr1:82714336-82714355 None:intergenic 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG + Chr1:82713804-82713823 MsG0180004782.01.T01:intron 40.0%
AACATTTGAGTCCGATCCCT+TGG + Chr1:82714849-82714868 MsG0180004782.01.T01:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG - Chr1:82714997-82715016 None:intergenic 45.0%
ACCTATCAGATGGAACCTCA+TGG + Chr1:82714461-82714480 MsG0180004782.01.T01:intron 45.0%
AGGCAAAGTTGCCGCTATAA+TGG + Chr1:82714256-82714275 MsG0180004782.01.T01:CDS 45.0%
ATATCCCTTCCCATGAGAAC+TGG - Chr1:82714726-82714745 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG + Chr1:82714233-82714252 MsG0180004782.01.T01:CDS 45.0%
CACCTGTAAGTTTCCAACAC+AGG + Chr1:82714646-82714665 MsG0180004782.01.T01:CDS 45.0%
CGAAAGATGCAAGTATCTGG+AGG + Chr1:82714595-82714614 MsG0180004782.01.T01:CDS 45.0%
CGGTGTATGTGTATCCAAAC+AGG + Chr1:82713661-82713680 MsG0180004782.01.T01:intron 45.0%
CTAGAATGTGCAAAAGGCTG+TGG - Chr1:82715315-82715334 None:intergenic 45.0%
CTCCGATACCATAGAAGCTA+CGG + Chr1:82713280-82713299 MsG0180004782.01.T01:CDS 45.0%
GAACTGAAGGCTTGGGTAAT+GGG + Chr1:82715357-82715376 MsG0180004782.01.T01:three_prime_UTR 45.0%
GAAGATGGAACTGAAGGCTT+GGG + Chr1:82715350-82715369 MsG0180004782.01.T01:three_prime_UTR 45.0%
GATGGAACCTCATGGAATAG+TGG + Chr1:82714469-82714488 MsG0180004782.01.T01:intron 45.0%
TAGAGCTCCAAAAGGAATGG+AGG - Chr1:82714209-82714228 None:intergenic 45.0%
TCCATGAGGTTCCATCTGAT+AGG - Chr1:82714465-82714484 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG - Chr1:82715211-82715230 None:intergenic 45.0%
TGAAGATGGAACTGAAGGCT+TGG + Chr1:82715349-82715368 MsG0180004782.01.T01:three_prime_UTR 45.0%
TGGAACCTCATGGAATAGTG+GGG + Chr1:82714471-82714490 MsG0180004782.01.T01:intron 45.0%
TTTGGACATGCTTCCAAGCA+AGG - Chr1:82715183-82715202 None:intergenic 45.0%
! GCAGAAGATGCAAACCGTTT+TGG - Chr1:82712915-82712934 None:intergenic 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG + Chr1:82712800-82712819 MsG0180004782.01.T01:CDS 45.0%
! GGATATCTAGAGTTTGACCG+AGG + Chr1:82714740-82714759 MsG0180004782.01.T01:intron 45.0%
! GGCAAAGATCTCCACCATTT+TGG + Chr1:82713825-82713844 MsG0180004782.01.T01:intron 45.0%
! GTTTCGCACCAAATTGGTTC+AGG + Chr1:82713060-82713079 MsG0180004782.01.T01:CDS 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG - Chr1:82715212-82715231 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG + Chr1:82715216-82715235 MsG0180004782.01.T01:CDS 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG + Chr1:82713867-82713886 MsG0180004782.01.T01:intron 45.0%
!! CACTAGCTTGTTACGTTCAG+GGG - Chr1:82714335-82714354 None:intergenic 45.0%
!! CTCACTAGCTTGTTACGTTC+AGG - Chr1:82714337-82714356 None:intergenic 45.0%
CTCATAGCTCCTATAGGTGG+AGG + Chr1:82714236-82714255 MsG0180004782.01.T01:CDS 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG + Chr1:82714611-82714630 MsG0180004782.01.T01:CDS 50.0%
CTTAAGCCGCCAGTTCTCAT+GGG + Chr1:82714714-82714733 MsG0180004782.01.T01:intron 50.0%
GATCACCCCACTATTCCATG+AGG - Chr1:82714479-82714498 None:intergenic 50.0%
GCAACTTTGCCTCCACCTAT+AGG - Chr1:82714248-82714267 None:intergenic 50.0%
GGAACTGAAGGCTTGGGTAA+TGG + Chr1:82715356-82715375 MsG0180004782.01.T01:three_prime_UTR 50.0%
GGCCAGTGATTGTTTCAGTC+AGG + Chr1:82714776-82714795 MsG0180004782.01.T01:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG - Chr1:82715147-82715166 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+AGG - Chr1:82713089-82713108 None:intergenic 50.0%
TCTCTTGCTAAGGCCCTGTT+TGG - Chr1:82713678-82713697 None:intergenic 50.0%
TCTTAAGCCGCCAGTTCTCA+TGG + Chr1:82714713-82714732 MsG0180004782.01.T01:intron 50.0%
TGAAGATGACACCGTCCTGA+AGG + Chr1:82715155-82715174 MsG0180004782.01.T01:CDS 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG - Chr1:82715148-82715167 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG - Chr1:82715150-82715169 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG - Chr1:82715149-82715168 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG - Chr1:82715156-82715175 None:intergenic 50.0%
CAAGCAAGGCTCCTTCAGGA+CGG - Chr1:82715169-82715188 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG - Chr1:82715173-82715192 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG + Chr1:82713203-82713222 MsG0180004782.01.T01:CDS 55.0%
GGCAGTCACACCTGTGTTTC+TGG - Chr1:82715229-82715248 None:intergenic 55.0%
TCCCTTCCCATGAGAACTGG+CGG - Chr1:82714723-82714742 None:intergenic 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG + Chr1:82713881-82713900 MsG0180004782.01.T01:intron 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG + Chr1:82713876-82713895 MsG0180004782.01.T01:intron 55.0%
AGCCGCCAGTTCTCATGGGA+AGG + Chr1:82714718-82714737 MsG0180004782.01.T01:intron 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG + Chr1:82715167-82715186 MsG0180004782.01.T01:CDS 60.0%
GCCGCCAGTTCTCATGGGAA+GGG + Chr1:82714719-82714738 MsG0180004782.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82712731 82715563 82712731 ID=MsG0180004782.01;Name=MsG0180004782.01
Chr1 mRNA 82712731 82715563 82712731 ID=MsG0180004782.01.T01;Parent=MsG0180004782.01;Name=MsG0180004782.01.T01;_AED=0.49;_eAED=0.49;_QI=63|0.83|0.85|1|1|1|7|300|255
Chr1 exon 82712731 82712919 82712731 ID=MsG0180004782.01.T01:exon:27388;Parent=MsG0180004782.01.T01
Chr1 exon 82712992 82713081 82712992 ID=MsG0180004782.01.T01:exon:27389;Parent=MsG0180004782.01.T01
Chr1 exon 82713197 82713301 82713197 ID=MsG0180004782.01.T01:exon:27390;Parent=MsG0180004782.01.T01
Chr1 exon 82714182 82714340 82714182 ID=MsG0180004782.01.T01:exon:27391;Parent=MsG0180004782.01.T01
Chr1 exon 82714587 82714667 82714587 ID=MsG0180004782.01.T01:exon:27392;Parent=MsG0180004782.01.T01
Chr1 exon 82714967 82715035 82714967 ID=MsG0180004782.01.T01:exon:27393;Parent=MsG0180004782.01.T01
Chr1 exon 82715126 82715563 82715126 ID=MsG0180004782.01.T01:exon:27394;Parent=MsG0180004782.01.T01
Chr1 five_prime_UTR 82712731 82712793 82712731 ID=MsG0180004782.01.T01:five_prime_utr;Parent=MsG0180004782.01.T01
Chr1 CDS 82712794 82712919 82712794 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 CDS 82712992 82713081 82712992 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 CDS 82713197 82713301 82713197 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 CDS 82714182 82714340 82714182 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 CDS 82714587 82714667 82714587 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 CDS 82714967 82715035 82714967 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 CDS 82715126 82715263 82715126 ID=MsG0180004782.01.T01:cds;Parent=MsG0180004782.01.T01
Chr1 three_prime_UTR 82715264 82715563 82715264 ID=MsG0180004782.01.T01:three_prime_utr;Parent=MsG0180004782.01.T01
Gene Sequence

>MsG0180004782.01.T01

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGGTGAGTCTGATAATATTACATCTCATTTTACAATTCTTCAAGATGATGTTCCCCTGAACGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAAGCAAGTGTGTTGGTATCTGCATCAACACCTGTAAGTTTCCAACACAGACCTTCTTCAAGGATCATATGGGAGTTCCATTACTCATGGAGCCCAACTTTGCTGATTATAGCTGTCAGTTCAAATTCGGAGTTCTTCCCCCACTTCCTGAAGATGACACCGTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCTACGAAGATTGGCTTCCAGAAACACAGGTGTGACTGCCTGCCCAAAGACATGA

Protein sequence

>MsG0180004782.01.T01

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVGESDNITSHFTILQDDVPLNVHVERCKYLEESKCVGICINTCKFPTQTFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASLRRLASRNTGVTACPKT*