AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020842.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020842.01.T01 MTR_4g060990 87.225 227 21 3 1 227 1 219 1.18e-137 385
MsG0480020842.01.T01 MTR_8g471160 31.746 189 121 4 9 197 11 191 1.97e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020842.01.T01 AT5G59770 57.561 205 79 3 10 214 8 204 8.23e-73 221
MsG0480020842.01.T01 AT5G10480 28.947 228 145 6 3 224 5 221 6.75e-13 65.9
MsG0480020842.01.T01 AT5G10480 29.064 203 131 5 28 224 1 196 1.98e-12 64.3
MsG0480020842.01.T01 AT5G10480 28.889 225 146 5 9 224 11 230 2.81e-12 64.3

Find 15 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGACATTGTTGTTATTA+TGG 0.224465 4:+49485589 None:intergenic
TCTACTAACTTTGATTCATT+GGG 0.249834 4:+49485676 None:intergenic
TTCTACTAACTTTGATTCAT+TGG 0.266010 4:+49485675 None:intergenic
TACTGAGTACTGACTAATTA+AGG 0.334013 4:+49485433 None:intergenic
CTCTCCACTTCCTCCATCAC+TGG 0.426494 4:-49485476 MsG0480020841.01.T01:CDS
AGTTCCAGTGATGGAGGAAG+TGG 0.507585 4:+49485472 None:intergenic
AATCAAAGTTAGTAGAAGAG+AGG 0.511792 4:-49485669 MsG0480020841.01.T01:five_prime_UTR
CTACTAACTTTGATTCATTG+GGG 0.563044 4:+49485677 None:intergenic
AGCATAAGTTCCAGTGATGG+AGG 0.564797 4:+49485466 None:intergenic
ACTGGAACTTATGCTTCTGC+CGG 0.569567 4:-49485458 MsG0480020841.01.T01:CDS
GTACTGACTAATTAAGGTGC+CGG 0.579270 4:+49485439 None:intergenic
GAAGAGAGGAGAGAATCCAT+TGG 0.582790 4:-49485655 MsG0480020841.01.T01:five_prime_UTR
CTTGAAAAGAGTTGTAAGCA+AGG 0.590281 4:+49485543 None:intergenic
TACTAACTTTGATTCATTGG+GGG 0.591664 4:+49485678 None:intergenic
AGAAGCATAAGTTCCAGTGA+TGG 0.646845 4:+49485463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAGAAAAATTAAAGAT+GGG - Chr4:49483190-49483209 MsG0480020842.01.T01:intron 10.0%
!! TATAAATTTCTATTTAATTG+AGG - Chr4:49483351-49483370 MsG0480020842.01.T01:intron 10.0%
!! TATATTAGAAAAATTAAAGA+TGG - Chr4:49483189-49483208 MsG0480020842.01.T01:intron 10.0%
!!! AATTTTTCTAATATATAGTA+AGG + Chr4:49483184-49483203 None:intergenic 10.0%
!!! ACATGTTATAATTTTATATA+TGG - Chr4:49484887-49484906 MsG0480020841.01.T01:intron 10.0%
!! AATTCAATAATCTAAACTAA+CGG + Chr4:49479296-49479315 None:intergenic 15.0%
!! GAAATATTGAATTAATGATT+AGG + Chr4:49479022-49479041 None:intergenic 15.0%
!! TTTGACAATTAAAAATTGTT+GGG + Chr4:49482322-49482341 None:intergenic 15.0%
!!! CATGTCTTTTTTTTTTTTTT+GGG + Chr4:49484080-49484099 None:intergenic 15.0%
!!! TTATTTATTTGACTTGTTAA+GGG - Chr4:49483639-49483658 MsG0480020841.01.T01:intron 15.0%
!!! TTTATTTATTTGACTTGTTA+AGG - Chr4:49483638-49483657 MsG0480020841.01.T01:intron 15.0%
!!! TTTTGACAATTAAAAATTGT+TGG + Chr4:49482323-49482342 None:intergenic 15.0%
!! AAACAGAGATAAAATTTGAT+AGG + Chr4:49482350-49482369 None:intergenic 20.0%
!! AAATTGAAACTTCATATTGA+AGG + Chr4:49485017-49485036 None:intergenic 20.0%
!! AAGCAAAAAAGAAAAAGAAA+AGG + Chr4:49480189-49480208 None:intergenic 20.0%
!! ACTTATTCAATTAAGATAGA+AGG + Chr4:49485275-49485294 None:intergenic 20.0%
!! AGAGTAAATAATATAGAACT+CGG - Chr4:49481905-49481924 MsG0480020842.01.T01:intron 20.0%
!! AGGAAATCATAATAACTAAA+TGG + Chr4:49480933-49480952 None:intergenic 20.0%
!! AGGTAATTATTCAATTGAAT+TGG - Chr4:49479580-49479599 MsG0480020842.01.T01:intron 20.0%
!! ATAACAATTGTACGAAATAA+TGG + Chr4:49481493-49481512 None:intergenic 20.0%
!! ATATTCTTCTCCTTTATAAT+TGG + Chr4:49480885-49480904 None:intergenic 20.0%
!! ATTATGGACTTTATCTTTAA+TGG - Chr4:49484355-49484374 MsG0480020841.01.T01:intron 20.0%
!! CAAAATTCGACAATAATTTA+GGG - Chr4:49485095-49485114 MsG0480020841.01.T01:intron 20.0%
!! CAAATTCAAAAATGAAAATG+TGG + Chr4:49484814-49484833 None:intergenic 20.0%
!! CCTATTTATAAGAGAAATTT+GGG - Chr4:49484173-49484192 MsG0480020841.01.T01:intron 20.0%
!! CTAATAATCAAAAGATAAAG+AGG + Chr4:49480644-49480663 None:intergenic 20.0%
!! GACATTACATAATATATGTA+GGG - Chr4:49483981-49484000 MsG0480020841.01.T01:CDS 20.0%
!! GATATGAACATAAAATTGTT+CGG + Chr4:49482014-49482033 None:intergenic 20.0%
!! GGAAATCATAATAACTAAAT+GGG + Chr4:49480932-49480951 None:intergenic 20.0%
!! TAGTTATTATGATTTCCTTA+AGG - Chr4:49480935-49480954 MsG0480020842.01.T01:intron 20.0%
!! TATGACTTATATTCAGAAAT+TGG - Chr4:49479624-49479643 MsG0480020842.01.T01:intron 20.0%
!! TCAAAATTCGACAATAATTT+AGG - Chr4:49485094-49485113 MsG0480020841.01.T01:intron 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + Chr4:49484222-49484241 None:intergenic 20.0%
!! TCAGATTTAACAAATATAAC+CGG - Chr4:49483413-49483432 MsG0480020841.01.T01:CDS 20.0%
!! TCCTATTTATAAGAGAAATT+TGG - Chr4:49484172-49484191 MsG0480020841.01.T01:intron 20.0%
!! TCTAATAATCTACAATTCAT+AGG + Chr4:49481163-49481182 None:intergenic 20.0%
!! TTGACAATTAAAAATTGTTG+GGG + Chr4:49482321-49482340 None:intergenic 20.0%
!!! AAAACAACATTTTATATCAC+AGG + Chr4:49481064-49481083 None:intergenic 20.0%
!!! AAACAACATTTTATATCACA+GGG + Chr4:49481063-49481082 None:intergenic 20.0%
!!! CATGAGAATGTTTTTAATAA+CGG - Chr4:49484657-49484676 MsG0480020841.01.T01:intron 20.0%
!!! CTCTTTATCTTTTGATTATT+AGG - Chr4:49480642-49480661 MsG0480020842.01.T01:intron 20.0%
!!! GCATGTCTTTTTTTTTTTTT+TGG + Chr4:49484081-49484100 None:intergenic 20.0%
!!! TATCATAAAAGTCACTTTTA+TGG + Chr4:49482532-49482551 None:intergenic 20.0%
!!! TATTTATTTGACTTGTTAAG+GGG - Chr4:49483640-49483659 MsG0480020841.01.T01:intron 20.0%
!!! TCAGTAATGATTAAGATTTT+AGG + Chr4:49481459-49481478 None:intergenic 20.0%
!!! TCTAAAATATTTCCTTTGAT+TGG + Chr4:49481516-49481535 None:intergenic 20.0%
!!! TTACGTTATTTTTTGCTTTT+CGG + Chr4:49484135-49484154 None:intergenic 20.0%
!!! TTTTCTAATATATAGTAAGG+TGG + Chr4:49483181-49483200 None:intergenic 20.0%
!!! TTTTTTTGGGTCATATAATA+TGG + Chr4:49484067-49484086 None:intergenic 20.0%
! AAACAAAACTTAACGATAAG+AGG + Chr4:49480740-49480759 None:intergenic 25.0%
! AAACTTCATATTGAAGGAAA+GGG + Chr4:49485011-49485030 None:intergenic 25.0%
! AAATCTTTGTGCAAGATAAA+AGG + Chr4:49482631-49482650 None:intergenic 25.0%
! AAATTTCAACTACAGTTAGA+AGG + Chr4:49479131-49479150 None:intergenic 25.0%
! AACAAAACTTAACGATAAGA+GGG + Chr4:49480739-49480758 None:intergenic 25.0%
! AATCATAATAACTAAATGGG+AGG + Chr4:49480929-49480948 None:intergenic 25.0%
! ACAAATTAGCAATTTGCATA+TGG + Chr4:49483566-49483585 None:intergenic 25.0%
! ACTTATATTCAGAAATTGGT+TGG - Chr4:49479628-49479647 MsG0480020842.01.T01:intron 25.0%
! AGGAGAAATACCTTATATTT+AGG - Chr4:49481722-49481741 MsG0480020842.01.T01:intron 25.0%
! ATAATATAAAATCTTGCCCT+CGG + Chr4:49483072-49483091 None:intergenic 25.0%
! ATCTTACATGAGTTTATAGA+GGG - Chr4:49482031-49482050 MsG0480020842.01.T01:intron 25.0%
! ATGACAAACGACAATATATT+TGG + Chr4:49482721-49482740 None:intergenic 25.0%
! ATTCAATATTTCATCGTTGA+AGG - Chr4:49479030-49479049 MsG0480020842.01.T01:intron 25.0%
! ATTTCTCTTATAAATAGGAC+CGG + Chr4:49484171-49484190 None:intergenic 25.0%
! CCCAAATTTCTCTTATAAAT+AGG + Chr4:49484176-49484195 None:intergenic 25.0%
! CCTAACTTTCTCTTATAAAT+AGG - Chr4:49484242-49484261 MsG0480020841.01.T01:intron 25.0%
! CCTATTTATAAGAGAAAGTT+AGG + Chr4:49484245-49484264 None:intergenic 25.0%
! GCAATATCCATATAATAGAA+TGG + Chr4:49479274-49479293 None:intergenic 25.0%
! GCATATAAAATGTTACCTTA+AGG + Chr4:49480953-49480972 None:intergenic 25.0%
! GCTTATTAATTGAACAAGAA+AGG - Chr4:49484833-49484852 MsG0480020841.01.T01:CDS 25.0%
! GGAATGGATAAACTATAATT+AGG + Chr4:49481214-49481233 None:intergenic 25.0%
! GGACATTACATAATATATGT+AGG - Chr4:49483980-49483999 MsG0480020841.01.T01:CDS 25.0%
! GGAGAAATACCTTATATTTA+GGG - Chr4:49481723-49481742 MsG0480020842.01.T01:intron 25.0%
! GTCATATTAGTCATATTTGT+AGG - Chr4:49485532-49485551 MsG0480020841.01.T01:CDS 25.0%
! TAAAGATATAATACTCCTTC+CGG + Chr4:49484269-49484288 None:intergenic 25.0%
! TACAATTGTTATCCAATCAA+AGG - Chr4:49481501-49481520 MsG0480020842.01.T01:intron 25.0%
! TACATAATATATGTAGGGAT+CGG - Chr4:49483986-49484005 MsG0480020841.01.T01:CDS 25.0%
! TACTTAAGGATAATGATCAA+CGG + Chr4:49484296-49484315 None:intergenic 25.0%
! TATCTTACATGAGTTTATAG+AGG - Chr4:49482030-49482049 MsG0480020842.01.T01:intron 25.0%
! TATTCATCAAGGAGAAAAAA+AGG - Chr4:49479952-49479971 MsG0480020842.01.T01:intron 25.0%
! TCAAACATAATTGAGTAGAA+AGG + Chr4:49481090-49481109 None:intergenic 25.0%
! TGACAATTAAAAATTGTTGG+GGG + Chr4:49482320-49482339 None:intergenic 25.0%
! TTATACCTAACTCATGTTTA+TGG - Chr4:49480353-49480372 MsG0480020842.01.T01:intron 25.0%
! TTATCCTTAAGTACTTCATA+AGG - Chr4:49484303-49484322 MsG0480020841.01.T01:intron 25.0%
! TTCTACTAACTTTGATTCAT+TGG + Chr4:49478708-49478727 None:intergenic 25.0%
! TTTATTGTGATTTATCCTGT+GGG - Chr4:49480674-49480693 MsG0480020842.01.T01:intron 25.0%
!! GATATTGATTGTCATTTCAA+TGG - Chr4:49483491-49483510 MsG0480020841.01.T01:CDS 25.0%
!! TGTTTATGGGAAATATTTTC+CGG + Chr4:49481959-49481978 None:intergenic 25.0%
!! TTTACCTTATGAAGTACTTA+AGG + Chr4:49484310-49484329 None:intergenic 25.0%
!! TTTCTTGAAAGAGTATAAGT+TGG - Chr4:49482827-49482846 MsG0480020842.01.T01:intron 25.0%
!! TTTTATCTTGCACAAAGATT+TGG - Chr4:49482630-49482649 MsG0480020842.01.T01:intron 25.0%
!! TTTTCTCGAATTATTAACAG+TGG + Chr4:49480256-49480275 None:intergenic 25.0%
!!! ATATTCCACTCATTGTTTTA+TGG - Chr4:49483596-49483615 MsG0480020841.01.T01:intron 25.0%
!!! ATCAGAAGTATTTATACGAT+AGG - Chr4:49479412-49479431 MsG0480020842.01.T01:intron 25.0%
!!! CATTTTAGTATGTATGACTT+CGG - Chr4:49481600-49481619 MsG0480020842.01.T01:intron 25.0%
!!! GTAGTTTTTCAATTATCCAA+TGG + Chr4:49479715-49479734 None:intergenic 25.0%
!!! TATGAAGTTTCAATTTTGAC+TGG - Chr4:49485021-49485040 MsG0480020841.01.T01:intron 25.0%
!!! TCTACCTTATGGATTTTAAT+AGG + Chr4:49481390-49481409 None:intergenic 25.0%
!!! TGTATCTGTTATTTTAGAGT+TGG - Chr4:49479817-49479836 MsG0480020842.01.T01:intron 25.0%
!!! TGTTGATTTTCTTATATGAG+AGG - Chr4:49482917-49482936 MsG0480020842.01.T01:intron 25.0%
!!! TTTGTTGTTTTTAGCGAATT+TGG - Chr4:49485618-49485637 MsG0480020841.01.T01:five_prime_UTR 25.0%
AAAAACAAACCACACAAAGA+CGG + Chr4:49485369-49485388 None:intergenic 30.0%
AAACAGAAGCTTGGAAATTT+CGG - Chr4:49484628-49484647 MsG0480020841.01.T01:intron 30.0%
AACAGTTTAAACAGAAAGCA+AGG + Chr4:49479873-49479892 None:intergenic 30.0%
AACTAATCAGCTATGCTATT+TGG - Chr4:49481792-49481811 MsG0480020842.01.T01:intron 30.0%
AACTGTTAATGTAACTCTTC+TGG - Chr4:49479453-49479472 MsG0480020842.01.T01:intron 30.0%
AACTTCATATTGAAGGAAAG+GGG + Chr4:49485010-49485029 None:intergenic 30.0%
AATCAAAGTTAGTAGAAGAG+AGG - Chr4:49478711-49478730 MsG0480020842.01.T01:exon 30.0%
ACAGACACCATATGTTTAAA+GGG + Chr4:49481934-49481953 None:intergenic 30.0%
ACATGAAAAGATGTGCATTA+TGG - Chr4:49484339-49484358 MsG0480020841.01.T01:intron 30.0%
ACTTAAGGATAATGATCAAC+GGG + Chr4:49484295-49484314 None:intergenic 30.0%
AGGATAAATCACAATAAACG+CGG + Chr4:49480672-49480691 None:intergenic 30.0%
AGTTAGGTATAAATGAAGCA+CGG + Chr4:49480345-49480364 None:intergenic 30.0%
ATGTCTCTGTTAACTTAGTT+CGG - Chr4:49483950-49483969 MsG0480020841.01.T01:CDS 30.0%
CAAGTCTTGAAATGAATTTC+AGG - Chr4:49479157-49479176 MsG0480020842.01.T01:intron 30.0%
CAATTTATGATAAGCAGTGT+TGG - Chr4:49479916-49479935 MsG0480020842.01.T01:intron 30.0%
CACACAAAACATGTTGATAT+CGG - Chr4:49483021-49483040 MsG0480020842.01.T01:exon 30.0%
CATCTAGAAATCATGTTGAA+TGG + Chr4:49484918-49484937 None:intergenic 30.0%
CATGCTATTGTCAAAAATTG+AGG - Chr4:49483822-49483841 MsG0480020841.01.T01:CDS 30.0%
CATTGTTAATGGAATTCATG+AGG - Chr4:49479246-49479265 MsG0480020842.01.T01:intron 30.0%
CGAAGTCATACATACTAAAA+TGG + Chr4:49481602-49481621 None:intergenic 30.0%
CGCAAGAAAAGTGATAAAAA+CGG + Chr4:49479547-49479566 None:intergenic 30.0%
CTATCAGTAGAGAATAAGAT+AGG + Chr4:49484570-49484589 None:intergenic 30.0%
CTCATGAATTCCATTAACAA+TGG + Chr4:49479248-49479267 None:intergenic 30.0%
CTTTCTCTTATAAATAGGAC+CGG - Chr4:49484247-49484266 MsG0480020841.01.T01:intron 30.0%
GAAACTTCATATTGAAGGAA+AGG + Chr4:49485012-49485031 None:intergenic 30.0%
GACATTCATATTCCTTCAAA+TGG - Chr4:49482886-49482905 MsG0480020842.01.T01:intron 30.0%
GATAGAAAAATGCCTGATAT+AGG + Chr4:49480533-49480552 None:intergenic 30.0%
GCAAGAAAAGTGATAAAAAC+GGG + Chr4:49479546-49479565 None:intergenic 30.0%
GCATATAAGACGGAAAAAAA+TGG - Chr4:49484410-49484429 MsG0480020841.01.T01:intron 30.0%
GCATTCTTAGAAGTTATACA+CGG - Chr4:49479069-49479088 MsG0480020842.01.T01:intron 30.0%
GGAATAAACTCTTCAAATAC+AGG + Chr4:49481581-49481600 None:intergenic 30.0%
GTATACCATAAACATGAGTT+AGG + Chr4:49480361-49480380 None:intergenic 30.0%
GTGTCCTATTAAAATCCATA+AGG - Chr4:49481383-49481402 MsG0480020842.01.T01:intron 30.0%
GTTTATTGTGATTTATCCTG+TGG - Chr4:49480673-49480692 MsG0480020842.01.T01:intron 30.0%
TAACAAGAAGAAGAAGAAAG+AGG + Chr4:49485197-49485216 None:intergenic 30.0%
TAATGGTATAGACAACCTAA+CGG - Chr4:49483741-49483760 MsG0480020841.01.T01:intron 30.0%
TACTCTATATCTCTAACCAT+TGG - Chr4:49479696-49479715 MsG0480020842.01.T01:intron 30.0%
TAGTGTCATGTTGAAAGTTA+TGG + Chr4:49483517-49483536 None:intergenic 30.0%
TCATATTCCTTCAAATGGTT+TGG - Chr4:49482891-49482910 MsG0480020842.01.T01:intron 30.0%
TGACACAGTATTTATGGATT+TGG + Chr4:49480396-49480415 None:intergenic 30.0%
TGAGGTTCCATTCTATTATA+TGG - Chr4:49479264-49479283 MsG0480020842.01.T01:intron 30.0%
TGTACATAGTGCATATAAGA+CGG - Chr4:49484400-49484419 MsG0480020841.01.T01:intron 30.0%
TTAACTTAGTTCGGTTGTTA+GGG - Chr4:49483959-49483978 MsG0480020841.01.T01:CDS 30.0%
TTAGGTACTCATATTCATCA+AGG - Chr4:49479941-49479960 MsG0480020842.01.T01:intron 30.0%
TTATACACACATCCTTTACT+CGG - Chr4:49483696-49483715 MsG0480020841.01.T01:CDS 30.0%
TTATAGTTTATCCATTCCTC+TGG - Chr4:49481216-49481235 MsG0480020842.01.T01:intron 30.0%
TTCCCATAAACAATACTCAA+TGG - Chr4:49481967-49481986 MsG0480020842.01.T01:intron 30.0%
TTCTATATTCTCCATAGTGA+TGG - Chr4:49480559-49480578 MsG0480020842.01.T01:intron 30.0%
TTCTTCAAAGCAAAAACAAG+AGG + Chr4:49481663-49481682 None:intergenic 30.0%
TTCTTCTTCTTCTTGTTAGA+GGG - Chr4:49485199-49485218 MsG0480020841.01.T01:CDS 30.0%
TTTCTTCTTCTTCTTGTTAG+AGG - Chr4:49485198-49485217 MsG0480020841.01.T01:CDS 30.0%
! ATTCTCTAAAAACAAGGGAA+GGG + Chr4:49480134-49480153 None:intergenic 30.0%
! CACCATTGAGTATTGTTTAT+GGG + Chr4:49481972-49481991 None:intergenic 30.0%
! CTGACATTCTCTAAAAACAA+GGG + Chr4:49480139-49480158 None:intergenic 30.0%
! GAGAGACATTGTTGTTATTA+TGG + Chr4:49478794-49478813 None:intergenic 30.0%
! GATGATTTTGCTTCAATCTT+TGG - Chr4:49480441-49480460 MsG0480020842.01.T01:intron 30.0%
! GGACTTTATCTTTAATGGAT+TGG - Chr4:49484360-49484379 MsG0480020841.01.T01:intron 30.0%
! TATATGCAACTGATTAGTCA+TGG - Chr4:49480966-49480985 MsG0480020842.01.T01:intron 30.0%
! TTTTAATCTTGCAAGTCGAA+AGG - Chr4:49481623-49481642 MsG0480020842.01.T01:intron 30.0%
!! AAGATTAGTCTCAAGTGAAT+GGG - Chr4:49484983-49485002 MsG0480020841.01.T01:intron 30.0%
!! ACTACTCACTGTATTTTTGT+TGG - Chr4:49481682-49481701 MsG0480020842.01.T01:intron 30.0%
!! GCTAGTAATTCTCTTTTTCA+AGG + Chr4:49484042-49484061 None:intergenic 30.0%
!! TACAACTCTTTTCAAGCAAT+TGG - Chr4:49478844-49478863 MsG0480020842.01.T01:exon 30.0%
!! TACTGAGTACTGACTAATTA+AGG + Chr4:49478950-49478969 None:intergenic 30.0%
!! TGGAATTAGCTTTGAGAATT+AGG - Chr4:49481702-49481721 MsG0480020842.01.T01:intron 30.0%
!! TGGATTTTAATAGGACACTT+TGG + Chr4:49481381-49481400 None:intergenic 30.0%
!! TTTTGGGTCATATAATATGG+TGG + Chr4:49484064-49484083 None:intergenic 30.0%
!! TTTTTATCACTTTTCTTGCG+TGG - Chr4:49479547-49479566 MsG0480020842.01.T01:intron 30.0%
!!! AATTTTCGAGTAGATTGACT+TGG - Chr4:49482188-49482207 MsG0480020842.01.T01:intron 30.0%
!!! ATTTTCGAGTAGATTGACTT+GGG - Chr4:49482189-49482208 MsG0480020842.01.T01:intron 30.0%
!!! GTTATTTTTTGCTTTTCGGT+AGG + Chr4:49484131-49484150 None:intergenic 30.0%
AAAACAAACCACACAAAGAC+GGG + Chr4:49485368-49485387 None:intergenic 35.0%
AAACTCTTCAAATACAGGCT+TGG + Chr4:49481576-49481595 None:intergenic 35.0%
AAATAAACACCGCACTAAGA+CGG + Chr4:49485398-49485417 None:intergenic 35.0%
AAATATAACCGGAAGAGTTG+TGG - Chr4:49483424-49483443 MsG0480020841.01.T01:CDS 35.0%
AAATCTGTGCAGAATAATGC+AGG - Chr4:49481409-49481428 MsG0480020842.01.T01:intron 35.0%
AACATGACCAAACCATTTGA+AGG + Chr4:49482901-49482920 None:intergenic 35.0%
AACTCTTCAAATACAGGCTT+GGG + Chr4:49481575-49481594 None:intergenic 35.0%
AAGAAAATAGAGACACCATC+AGG + Chr4:49482813-49482832 None:intergenic 35.0%
AATATAACCGGAAGAGTTGT+GGG - Chr4:49483425-49483444 MsG0480020841.01.T01:CDS 35.0%
AATTCTCTAACTCGTGTCTT+TGG - Chr4:49479488-49479507 MsG0480020842.01.T01:intron 35.0%
ACCATAGTGCTATATGAAGT+AGG + Chr4:49484540-49484559 None:intergenic 35.0%
AGAAAAGTGATAAAAACGGG+AGG + Chr4:49479543-49479562 None:intergenic 35.0%
AGAAAATAGAGACACCATCA+GGG + Chr4:49482812-49482831 None:intergenic 35.0%
AGAAGGAAAAACAACTCAGA+GGG + Chr4:49485258-49485277 None:intergenic 35.0%
AGATACAAAAAAACGCAGAC+AGG + Chr4:49479804-49479823 None:intergenic 35.0%
ATCCTCCATAAAACAATGAG+TGG + Chr4:49483604-49483623 None:intergenic 35.0%
ATGAATACCCATTGTCATTG+TGG + Chr4:49482225-49482244 None:intergenic 35.0%
ATGACAGTAAAACCTACCAA+TGG + Chr4:49479097-49479116 None:intergenic 35.0%
ATGAGTTTATAGAGGGAAAC+AGG - Chr4:49482038-49482057 MsG0480020842.01.T01:intron 35.0%
ATGTTACCACCACAATACAT+AGG + Chr4:49482961-49482980 None:intergenic 35.0%
ATTAGTTATGCTTGTGAGAG+GGG + Chr4:49481779-49481798 None:intergenic 35.0%
ATTGCACGTAGAATTTCGTT+CGG - Chr4:49481034-49481053 MsG0480020842.01.T01:intron 35.0%
CAATGGGTATTCATCTTACA+AGG - Chr4:49482231-49482250 MsG0480020842.01.T01:intron 35.0%
CACAGACACCATATGTTTAA+AGG + Chr4:49481935-49481954 None:intergenic 35.0%
CATTATGCTTTCAGTTGCTT+GGG - Chr4:49480487-49480506 MsG0480020842.01.T01:intron 35.0%
CCAAAGTCATTGTCATTGAT+CGG + Chr4:49485459-49485478 None:intergenic 35.0%
CCATAAACAATACTCAATGG+TGG - Chr4:49481970-49481989 MsG0480020842.01.T01:intron 35.0%
CCATAAATACTGTGTCATAG+AGG - Chr4:49480399-49480418 MsG0480020842.01.T01:intron 35.0%
CCATAGTGCTATATGAAGTA+GGG + Chr4:49484539-49484558 None:intergenic 35.0%
CCTCTATGACACAGTATTTA+TGG + Chr4:49480402-49480421 None:intergenic 35.0%
CGGATTGTATGGTTGATTAA+TGG - Chr4:49483724-49483743 MsG0480020841.01.T01:intron 35.0%
CTTAAGGATAATGATCAACG+GGG + Chr4:49484294-49484313 None:intergenic 35.0%
CTTGAAAAGAGTTGTAAGCA+AGG + Chr4:49478840-49478859 None:intergenic 35.0%
CTTGAAATGAATTTCAGGAC+TGG - Chr4:49479162-49479181 MsG0480020842.01.T01:intron 35.0%
CTTTCTGTACCATTGTTACT+AGG - Chr4:49481355-49481374 MsG0480020842.01.T01:intron 35.0%
GAATTCCATTAACAATGGCA+AGG + Chr4:49479243-49479262 None:intergenic 35.0%
GAGAGACGAGTATATGATTA+AGG + Chr4:49482744-49482763 None:intergenic 35.0%
GGAATACATACGATTGATCA+TGG + Chr4:49479783-49479802 None:intergenic 35.0%
GTACTTATCAAACAGAAGCT+TGG - Chr4:49484619-49484638 MsG0480020841.01.T01:intron 35.0%
GTCTTATATGCACTATGTAC+AGG + Chr4:49484401-49484420 None:intergenic 35.0%
GTTAACTTAGTTCGGTTGTT+AGG - Chr4:49483958-49483977 MsG0480020841.01.T01:CDS 35.0%
TACATCAGACACTATACTGT+CGG - Chr4:49479732-49479751 MsG0480020842.01.T01:intron 35.0%
TAGAAGGAAAAACAACTCAG+AGG + Chr4:49485259-49485278 None:intergenic 35.0%
TATAGTTTGAACCAGAGGAA+TGG + Chr4:49481230-49481249 None:intergenic 35.0%
TCGGAAACCCTTTAAACATA+TGG - Chr4:49481924-49481943 MsG0480020842.01.T01:intron 35.0%
TCTCGAATTATTAACAGTGG+CGG + Chr4:49480253-49480272 None:intergenic 35.0%
TCTTCTTCTTCTTGTTAGAG+GGG - Chr4:49485200-49485219 MsG0480020841.01.T01:CDS 35.0%
TGAAGTAGGGAGATTTAGTA+TGG + Chr4:49484526-49484545 None:intergenic 35.0%
TGAATACCCATTGTCATTGT+GGG + Chr4:49482224-49482243 None:intergenic 35.0%
TTAAACAGAAAGCAAGGTCA+AGG + Chr4:49479867-49479886 None:intergenic 35.0%
TTAAGGATAATGATCAACGG+GGG + Chr4:49484293-49484312 None:intergenic 35.0%
TTAGTCGATACAATGCAGTA+TGG - Chr4:49480841-49480860 MsG0480020842.01.T01:intron 35.0%
TTCTTCTATAACCTCACTCT+TGG - Chr4:49480999-49481018 MsG0480020842.01.T01:intron 35.0%
TTGTAGGCATAGATACTTTG+CGG - Chr4:49485548-49485567 MsG0480020841.01.T01:CDS 35.0%
TTTGTCCTTGCCATTGTTAA+TGG - Chr4:49479235-49479254 MsG0480020842.01.T01:intron 35.0%
! CATTCTCTAAAAACAAGGGA+AGG + Chr4:49480135-49480154 None:intergenic 35.0%
! CCACCATTGAGTATTGTTTA+TGG + Chr4:49481973-49481992 None:intergenic 35.0%
! CCTGACATTCTCTAAAAACA+AGG + Chr4:49480140-49480159 None:intergenic 35.0%
! CGATATCAACATGTTTTGTG+TGG + Chr4:49483023-49483042 None:intergenic 35.0%
! GATCTAGGTAGAGTAGTTTT+GGG + Chr4:49483460-49483479 None:intergenic 35.0%
! GATTAGTTATGCTTGTGAGA+GGG + Chr4:49481780-49481799 None:intergenic 35.0%
! GCAAAAATGAAAGTGTGATG+AGG + Chr4:49482081-49482100 None:intergenic 35.0%
! TCCATAGTGATGGAAAAATG+AGG - Chr4:49480569-49480588 MsG0480020842.01.T01:intron 35.0%
! TGATTAGTTATGCTTGTGAG+AGG + Chr4:49481781-49481800 None:intergenic 35.0%
! TTAATGATTAGGAGTGTGTG+AGG + Chr4:49479011-49479030 None:intergenic 35.0%
! TTCTCTAAAAACAAGGGAAG+GGG + Chr4:49480133-49480152 None:intergenic 35.0%
! TTGATGCATCTTGATGACAT+AGG - Chr4:49479330-49479349 MsG0480020842.01.T01:intron 35.0%
!! ACCTCATTTTTCCATCACTA+TGG + Chr4:49480573-49480592 None:intergenic 35.0%
!! ACTCTTTTCAAGCAATTGGA+TGG - Chr4:49478848-49478867 MsG0480020842.01.T01:exon 35.0%
!! ATCTAGGTAGAGTAGTTTTG+GGG + Chr4:49483459-49483478 None:intergenic 35.0%
!! CAAGATTAGTCTCAAGTGAA+TGG - Chr4:49484982-49485001 MsG0480020841.01.T01:intron 35.0%
!! CCATTGGTGTTTTGTGAAAA+AGG - Chr4:49478741-49478760 MsG0480020842.01.T01:exon 35.0%
!! CCTTTTTCACAAAACACCAA+TGG + Chr4:49478744-49478763 None:intergenic 35.0%
!! GCGGTTTTATGCTATTAACA+TGG - Chr4:49485567-49485586 MsG0480020841.01.T01:CDS 35.0%
!! TTCCACTCATTGTTTTATGG+AGG - Chr4:49483599-49483618 MsG0480020841.01.T01:intron 35.0%
!! TTTGATTTTCCGTCTTAGTG+CGG - Chr4:49485386-49485405 MsG0480020841.01.T01:intron 35.0%
!!! CCTTGTTTTTAGAGAATGTC+AGG - Chr4:49480137-49480156 MsG0480020842.01.T01:intron 35.0%
!!! GGGGTATTTTGGTATTTTTG+CGG + Chr4:49482113-49482132 None:intergenic 35.0%
!!! TCTTTTTCAAGGAGAATGAG+TGG + Chr4:49484031-49484050 None:intergenic 35.0%
AAACATATGGTGTCTGTGTC+CGG - Chr4:49481937-49481956 MsG0480020842.01.T01:intron 40.0%
ACACTTTGGCCTAGTAACAA+TGG + Chr4:49481367-49481386 None:intergenic 40.0%
ACATCCTTTACTCGGATAGT+CGG - Chr4:49483704-49483723 MsG0480020841.01.T01:CDS 40.0%
ACGTAATCAAATACTCCCTC+CGG - Chr4:49484149-49484168 MsG0480020841.01.T01:intron 40.0%
ACTAAATGGGAGGCTTGAAA+AGG + Chr4:49480919-49480938 None:intergenic 40.0%
ACTCTTCAAATACAGGCTTG+GGG + Chr4:49481574-49481593 None:intergenic 40.0%
AGAAGAAAGAGGTGATGACT+AGG + Chr4:49485186-49485205 None:intergenic 40.0%
AGAAGAGAGAGAGGAAGAAA+GGG + Chr4:49485150-49485169 None:intergenic 40.0%
AGTGTGTCGAGATACTATGT+CGG + Chr4:49481829-49481848 None:intergenic 40.0%
ATATAACCGGAAGAGTTGTG+GGG - Chr4:49483426-49483445 MsG0480020841.01.T01:CDS 40.0%
ATGCTTCATTTCTCTCGATC+AGG - Chr4:49481187-49481206 MsG0480020842.01.T01:intron 40.0%
CAATCAATATCAACCAGCCA+CGG + Chr4:49483482-49483501 None:intergenic 40.0%
CATATGAACTCACTTTCTCC+AGG + Chr4:49480707-49480726 None:intergenic 40.0%
CATATGGACGAAGAGACAAA+AGG + Chr4:49483550-49483569 None:intergenic 40.0%
CCACTGCTACCCTAAATATA+AGG + Chr4:49481735-49481754 None:intergenic 40.0%
CCCTACTTCATATAGCACTA+TGG - Chr4:49484536-49484555 MsG0480020841.01.T01:intron 40.0%
CCGATCAATGACAATGACTT+TGG - Chr4:49485456-49485475 MsG0480020841.01.T01:CDS 40.0%
CTCTTATAAATAGGACCGGA+AGG - Chr4:49484251-49484270 MsG0480020841.01.T01:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG + Chr4:49484270-49484251 None:intergenic 40.0%
CTGATATAGGTGATCCATGA+AGG + Chr4:49480520-49480539 None:intergenic 40.0%
CTGCACAGATTTCTACCTTA+TGG + Chr4:49481401-49481420 None:intergenic 40.0%
CTTCATGGATCACCTATATC+AGG - Chr4:49480518-49480537 MsG0480020842.01.T01:intron 40.0%
GAAAATAGAGACACCATCAG+GGG + Chr4:49482811-49482830 None:intergenic 40.0%
GAAGAAAGAGGTGATGACTA+GGG + Chr4:49485185-49485204 None:intergenic 40.0%
GAAGGAAAAACAACTCAGAG+GGG + Chr4:49485257-49485276 None:intergenic 40.0%
GATGCTCCTATTTGCTTACA+TGG - Chr4:49484934-49484953 MsG0480020841.01.T01:intron 40.0%
GCATTATGCTTTCAGTTGCT+TGG - Chr4:49480486-49480505 MsG0480020842.01.T01:intron 40.0%
GTGCGGTGTTTATTTGATTC+AGG - Chr4:49485403-49485422 MsG0480020841.01.T01:intron 40.0%
GTTGCTTCCTTTGATGCAAT+GGG - Chr4:49479198-49479217 MsG0480020842.01.T01:intron 40.0%
TAGGGAGATTTAGTATGGTC+CGG + Chr4:49484521-49484540 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG + Chr4:49484269-49484250 None:intergenic 40.0%
TGAGTCAATTTCCAAGAGTG+AGG + Chr4:49481013-49481032 None:intergenic 40.0%
TGTTGAACATTATGCTCGAG+AGG + Chr4:49482783-49482802 None:intergenic 40.0%
TTACAATGCCACAACATGCA+TGG + Chr4:49482275-49482294 None:intergenic 40.0%
TTGCTTCCTTTGATGCAATG+GGG - Chr4:49479199-49479218 MsG0480020842.01.T01:intron 40.0%
! AACTCAGAGGGGTGATTTTT+GGG + Chr4:49485246-49485265 None:intergenic 40.0%
! ACTTTTCTTGCGTGGAGTAT+AGG - Chr4:49479555-49479574 MsG0480020842.01.T01:intron 40.0%
! AGAAGCATAAGTTCCAGTGA+TGG + Chr4:49478920-49478939 None:intergenic 40.0%
! CCTATGCTCTTTTCTTGTCA+CGG + Chr4:49481295-49481314 None:intergenic 40.0%
! CCTTATATTTAGGGTAGCAG+TGG - Chr4:49481732-49481751 MsG0480020842.01.T01:intron 40.0%
! GGATCTAGGTAGAGTAGTTT+TGG + Chr4:49483461-49483480 None:intergenic 40.0%
! TGATAAGCAGTGTTGGAGTT+AGG - Chr4:49479923-49479942 MsG0480020842.01.T01:intron 40.0%
! TTTGATTTCCCGTCTTTGTG+TGG - Chr4:49485357-49485376 MsG0480020841.01.T01:intron 40.0%
!! GTACTGACTAATTAAGGTGC+CGG + Chr4:49478944-49478963 None:intergenic 40.0%
!! TAGATTGACTTGGGATCCTA+TGG - Chr4:49482198-49482217 MsG0480020842.01.T01:intron 40.0%
AAATCTAAGTCGTGTGGCAC+AGG + Chr4:49484707-49484726 None:intergenic 45.0%
AACTACTCTACCTAGATCCG+TGG - Chr4:49483462-49483481 MsG0480020841.01.T01:CDS 45.0%
AATCTAAGTCGTGTGGCACA+GGG + Chr4:49484706-49484725 None:intergenic 45.0%
AATGAAGCACGGATACTCCT+CGG + Chr4:49480334-49480353 None:intergenic 45.0%
ACAAGGGAAGGGGTTTGTAA+AGG + Chr4:49480123-49480142 None:intergenic 45.0%
ACACACTATACTGCTGAGTG+TGG - Chr4:49481842-49481861 MsG0480020842.01.T01:intron 45.0%
ACCTGCATTTGTTCAAGCAG+CGG - Chr4:49481249-49481268 MsG0480020842.01.T01:intron 45.0%
ACTCGGATAGTCGGATTGTA+TGG - Chr4:49483713-49483732 MsG0480020841.01.T01:CDS 45.0%
ACTGGAACTTATGCTTCTGC+CGG - Chr4:49478922-49478941 MsG0480020842.01.T01:exon 45.0%
AGCAGTGCTTGGTATTATCG+TGG - Chr4:49482133-49482152 MsG0480020842.01.T01:intron 45.0%
AGCATAAGTTCCAGTGATGG+AGG + Chr4:49478917-49478936 None:intergenic 45.0%
ATCCGGAGACATGAGTATTC+TGG - Chr4:49485496-49485515 MsG0480020841.01.T01:CDS 45.0%
CAAGGGAAGGGGTTTGTAAA+GGG + Chr4:49480122-49480141 None:intergenic 45.0%
CAATCCGACTATCCGAGTAA+AGG + Chr4:49483711-49483730 None:intergenic 45.0%
CCAGGCGCTTCCAATTATAA+AGG - Chr4:49480872-49480891 MsG0480020842.01.T01:intron 45.0%
CGTTGCTTCCTTTGATGCAA+TGG - Chr4:49479197-49479216 MsG0480020842.01.T01:intron 45.0%
CTATGGCCCACAATGACAAT+GGG - Chr4:49482215-49482234 MsG0480020842.01.T01:intron 45.0%
CTCCAGAATACTCATGTCTC+CGG + Chr4:49485501-49485520 None:intergenic 45.0%
CTCCTATTTGCTTACATGGC+AGG - Chr4:49484938-49484957 MsG0480020841.01.T01:intron 45.0%
CTTGTTAGAGGGGTGATCTA+TGG - Chr4:49485210-49485229 MsG0480020841.01.T01:intron 45.0%
GAAGAGAGAGAGGAAGAAAG+GGG + Chr4:49485149-49485168 None:intergenic 45.0%
GAAGAGAGGAGAGAATCCAT+TGG - Chr4:49478725-49478744 MsG0480020842.01.T01:exon 45.0%
GAGAAGAGAGAGAGGAAGAA+AGG + Chr4:49485151-49485170 None:intergenic 45.0%
GAGCGAAAATCTAAGTCGTG+TGG + Chr4:49484713-49484732 None:intergenic 45.0%
GCAGGTATAGTTTGAACCAG+AGG + Chr4:49481235-49481254 None:intergenic 45.0%
GTCCTGCCATGTAAGCAAAT+AGG + Chr4:49484943-49484962 None:intergenic 45.0%
GTGATGACTAGGGTTTGAGA+AGG + Chr4:49485175-49485194 None:intergenic 45.0%
TAAAAACGGGAGGTAACTCC+TGG + Chr4:49479533-49479552 None:intergenic 45.0%
TACCGACGCATATCTAACAC+CGG - Chr4:49484499-49484518 MsG0480020841.01.T01:intron 45.0%
TATAAAATCTTGCCCTCGGC+AGG + Chr4:49483068-49483087 None:intergenic 45.0%
TATAACCGGAAGAGTTGTGG+GGG - Chr4:49483427-49483446 MsG0480020841.01.T01:CDS 45.0%
TATAGACAACCTAACGGCTG+TGG - Chr4:49483747-49483766 MsG0480020841.01.T01:intron 45.0%
TGACCAACGCCTATGTATTG+TGG - Chr4:49482949-49482968 MsG0480020842.01.T01:intron 45.0%
TGCTTATACCCTACGAAGCA+CGG - Chr4:49480204-49480223 MsG0480020842.01.T01:intron 45.0%
TTTGGTTGAGTGCTTTCTCC+AGG - Chr4:49479506-49479525 MsG0480020842.01.T01:intron 45.0%
! ACGATAATACCAAGCACTGC+TGG + Chr4:49482134-49482153 None:intergenic 45.0%
! CAACTCAGAGGGGTGATTTT+TGG + Chr4:49485247-49485266 None:intergenic 45.0%
! CCGTGACAAGAAAAGAGCAT+AGG - Chr4:49481292-49481311 MsG0480020842.01.T01:intron 45.0%
! CGATAATACCAAGCACTGCT+GGG + Chr4:49482133-49482152 None:intergenic 45.0%
! GATAATACCAAGCACTGCTG+GGG + Chr4:49482132-49482151 None:intergenic 45.0%
! GGTAGCAGTGGATTTGTTTG+AGG - Chr4:49481744-49481763 MsG0480020842.01.T01:intron 45.0%
! TGCAGTATGGTTGATGTACC+AGG - Chr4:49480854-49480873 MsG0480020842.01.T01:intron 45.0%
!! CCTTTATAATTGGAAGCGCC+TGG + Chr4:49480875-49480894 None:intergenic 45.0%
!! GAAGTTATACACGGTGCCAT+TGG - Chr4:49479078-49479097 MsG0480020842.01.T01:intron 45.0%
!! TTATACACGGTGCCATTGGT+AGG - Chr4:49479082-49479101 MsG0480020842.01.T01:intron 45.0%
ATGCATGGCCCAATAGCAAG+TGG + Chr4:49482260-49482279 None:intergenic 50.0%
CAAAATACCCCAGCAGTGCT+TGG - Chr4:49482122-49482141 MsG0480020842.01.T01:intron 50.0%
CACTATACTGTCGGAGACGT+AGG - Chr4:49479741-49479760 MsG0480020842.01.T01:intron 50.0%
CAGAAATGTTGACCTGCCGA+GGG - Chr4:49483053-49483072 MsG0480020842.01.T01:exon 50.0%
CCAACGCCTATGTATTGTGG+TGG - Chr4:49482952-49482971 MsG0480020842.01.T01:intron 50.0%
CCACCACAATACATAGGCGT+TGG + Chr4:49482955-49482974 None:intergenic 50.0%
CCATTGTCATTGTGGGCCAT+AGG + Chr4:49482217-49482236 None:intergenic 50.0%
CCTATGGCCCACAATGACAA+TGG - Chr4:49482214-49482233 MsG0480020842.01.T01:intron 50.0%
CTATTGGGCCATGCATGTTG+TGG - Chr4:49482264-49482283 MsG0480020842.01.T01:intron 50.0%
CTTCCTCCCCATTGCATCAA+AGG + Chr4:49479208-49479227 None:intergenic 50.0%
CTTCCTTTGATGCAATGGGG+AGG - Chr4:49479202-49479221 MsG0480020842.01.T01:intron 50.0%
CTTTGATGCAATGGGGAGGA+AGG - Chr4:49479206-49479225 MsG0480020842.01.T01:intron 50.0%
GAGAAGGAGAGAAGAGAGAG+AGG + Chr4:49485159-49485178 None:intergenic 50.0%
GCTTGGGAAACTGTCCTTCA+TGG - Chr4:49480503-49480522 MsG0480020842.01.T01:intron 50.0%
TACCCTACGAAGCACGGATA+CGG - Chr4:49480210-49480229 MsG0480020842.01.T01:intron 50.0%
TATCAACCAGCCACGGATCT+AGG + Chr4:49483475-49483494 None:intergenic 50.0%
TATGTGACATGTCCGACACC+AGG - Chr4:49480297-49480316 MsG0480020842.01.T01:intron 50.0%
TGCATGGCCCAATAGCAAGT+GGG + Chr4:49482259-49482278 None:intergenic 50.0%
TGTGGTCTGCGTTCAGTTGT+AGG + Chr4:49484796-49484815 None:intergenic 50.0%
! AGTTCCAGTGATGGAGGAAG+TGG + Chr4:49478911-49478930 None:intergenic 50.0%
! GTCCGGTGTTAGATATGCGT+CGG + Chr4:49484504-49484523 None:intergenic 50.0%
!! CAAGCACTGCTGGGGTATTT+TGG + Chr4:49482124-49482143 None:intergenic 50.0%
!! TATCCTGTGGGAGTGTTTCC+TGG - Chr4:49480686-49480705 MsG0480020842.01.T01:intron 50.0%
AAAGGAAGCAACGCTCCGCT+CGG + Chr4:49479190-49479209 None:intergenic 55.0%
ACGAAGCACGGATACGGACA+TGG - Chr4:49480216-49480235 MsG0480020842.01.T01:intron 55.0%
ACTCTACCTAGATCCGTGGC+TGG - Chr4:49483466-49483485 MsG0480020841.01.T01:CDS 55.0%
ATACAGGCTTGGGGTGACAC+AGG + Chr4:49481565-49481584 None:intergenic 55.0%
CATGGCCCAATAGCAAGTGG+GGG + Chr4:49482257-49482276 None:intergenic 55.0%
CCAGAAATGTTGACCTGCCG+AGG - Chr4:49483052-49483071 MsG0480020842.01.T01:exon 55.0%
CCTCGGCAGGTCAACATTTC+TGG + Chr4:49483055-49483074 None:intergenic 55.0%
CGTCGTCAACGTTGCAGATC+CGG - Chr4:49485479-49485498 MsG0480020841.01.T01:CDS 55.0%
CTCTCCACTTCCTCCATCAC+TGG - Chr4:49478904-49478923 MsG0480020842.01.T01:exon 55.0%
GAGTGTGGACATCGAACTCG+AGG - Chr4:49481857-49481876 MsG0480020842.01.T01:intron 55.0%
GATTAGGCGTGTCCTGGTGT+CGG + Chr4:49480312-49480331 None:intergenic 55.0%
GCACGGATACTCCTCGGATT+AGG + Chr4:49480328-49480347 None:intergenic 55.0%
GCATGGCCCAATAGCAAGTG+GGG + Chr4:49482258-49482277 None:intergenic 55.0%
GCCGCTGCTTGAACAAATGC+AGG + Chr4:49481253-49481272 None:intergenic 55.0%
GCTTCATAGCCACAGCCGTT+AGG + Chr4:49483759-49483778 None:intergenic 55.0%
GTCCGTATCCGTGCTTCGTA+GGG + Chr4:49480215-49480234 None:intergenic 55.0%
GTCGGAGACGTAGGCACAAT+TGG - Chr4:49479750-49479769 MsG0480020842.01.T01:intron 55.0%
GTTCAACACACGTCCCCTGA+TGG - Chr4:49482795-49482814 MsG0480020842.01.T01:intron 55.0%
TCTCCAGGAAACACTCCCAC+AGG + Chr4:49480692-49480711 None:intergenic 55.0%
TCTTGCGTGGAGTATAGGCG+AGG - Chr4:49479560-49479579 MsG0480020842.01.T01:intron 55.0%
TGAGTGCTTTCTCCAGGTCC+AGG - Chr4:49479512-49479531 MsG0480020842.01.T01:intron 55.0%
TGTCCGTATCCGTGCTTCGT+AGG + Chr4:49480216-49480235 None:intergenic 55.0%
! ATTTCAGGACTGGTGCCGAG+CGG - Chr4:49479172-49479191 MsG0480020842.01.T01:intron 55.0%
!! ACAAGGCCCCCACTTGCTAT+TGG - Chr4:49482248-49482267 MsG0480020842.01.T01:intron 55.0%
!! CAAGGCCCCCACTTGCTATT+GGG - Chr4:49482249-49482268 MsG0480020842.01.T01:intron 55.0%
AACCGCCCCCACAACTCTTC+CGG + Chr4:49483435-49483454 None:intergenic 60.0%
AACCGGAAGAGTTGTGGGGG+CGG - Chr4:49483430-49483449 MsG0480020841.01.T01:CDS 60.0%
ACCAGGACACGCCTAATCCG+AGG - Chr4:49480314-49480333 MsG0480020842.01.T01:intron 60.0%
! CACAGGGCACTCAGCTAGGT+GGG + Chr4:49484690-49484709 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+TGG + Chr4:49480318-49480337 None:intergenic 60.0%
CGGGAGGTAACTCCTGGACC+TGG + Chr4:49479527-49479546 None:intergenic 65.0%
! GCACAGGGCACTCAGCTAGG+TGG + Chr4:49484691-49484710 None:intergenic 65.0%
! GTGGCACAGGGCACTCAGCT+AGG + Chr4:49484694-49484713 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 49478705 49485697 49478705 ID=MsG0480020842.01;
Chr4 mRNA 49478705 49485697 49478705 ID=MsG0480020842.01.T01;Parent=MsG0480020842.01
Chr4 exon 49478705 49478977 49478705 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 exon 49482998 49483193 49482998 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49483089 49483193 49483089 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 CDS 49483446 49483543 49483446 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49483446 49483543 49483446 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49483689 49483771 49483689 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49483689 49483771 49483689 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49484103 49484113 49484103 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49484103 49484113 49484103 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49484231 49484243 49484231 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49484231 49484243 49484231 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49484458 49484469 49484458 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49484458 49484469 49484458 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49484801 49484874 49484801 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49484801 49484874 49484801 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49485135 49485223 49485135 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49485135 49485223 49485135 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49485303 49485350 49485303 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49485303 49485350 49485303 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Chr4 CDS 49485447 49485597 49485447 ID=MsG0480020842.01.T01.cds;Parent=MsG0480020842.01.T01
Chr4 exon 49485447 49485697 49485447 ID=MsG0480020842.01.T01.exon;Parent=MsG0480020842.01.T01
Gene Sequence

>MsG0480020842.01.T01

ATGTCTCTCAAACTATCAACAACACTTTATCTCCTTGCTTACAACTCTTTTCAAGCAATTGGATGGTTCGTATCATTAATCATCATTTTGTACAATCTTCTCTCCACTTCCTCCATCACTGGAACTTATGCTTCTGCCGGCACCTTAATTAGCTTTCTGCAATGTGCTGCATTCTTAGAAGTTATACACGGTGCCATTGGACTGGTGCCGAGCGGAGCGTTGCTTCCTTTGATGCAATGGGGAGGAAGGACTCACTTTGTCCTTGCCATTGTTAATGGAATTCATGAGGTCCAGGAGTTACCTCCCGTTTTTATCACTTTTCTTGCGTGGAGTATAGGCGAGGTAATTATTCAATTGAATTGTGTTGGAGTTAGGTGTTTAGTTCATTGTAATTATATTATATGCTTGCCTCTTTATCTTTTGATTATTAGGTACACCGCGTTTATTGTGATTTATCCTGTGGGAGTGTTTCCTGGAGAAATATGGTTGATGTACCAGGCGCTTCCAATTATAAAGGAGAAGAATATCTATGCAGATTCCTTTTCAAGCCTCCCATTTAGTTATTATGATTTCCTTAAGGTCCTAATTATAGTTTATCCATTCCTCTGGTTCAAACTATACCTGCATTTGTTCAAGCAGCGGCGTTCAAAACTTTATAAACGCCGTGACAAGAAAAGAGCATAG

Protein sequence

>MsG0480020842.01.T01

MSLKLSTTLYLLAYNSFQAIGWFVSLIIILYNLLSTSSITGTYASAGTLISFLQCAAFLEVIHGAIGLVPSGALLPLMQWGGRTHFVLAIVNGIHEVQELPPVFITFLAWSIGEVIIQLNCVGVRCLVHCNYIICLPLYLLIIRYTAFIVIYPVGVFPGEIWLMYQALPIIKEKNIYADSFSSLPFSYYDFLKVLIIVYPFLWFKLYLHLFKQRRSKLYKRRDKKRA*