AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040640.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040640.01.T01 MTR_7g094890 99.679 312 1 0 69 380 62 373 0.0 640
MsG0780040640.01.T01 MTR_7g091320 30.222 225 137 5 104 315 24 241 5.25e-24 100
MsG0780040640.01.T01 MTR_7g091320 30.222 225 137 5 104 315 24 241 1.58e-23 100
MsG0780040640.01.T01 MTR_4g081850 26.354 277 170 9 117 380 198 453 1.52e-15 78.6
MsG0780040640.01.T01 MTR_2g079510 25.979 281 166 9 117 380 206 461 3.04e-15 77.8
MsG0780040640.01.T01 MTR_2g061470 27.103 214 135 6 98 298 23 228 8.79e-15 75.5
MsG0780040640.01.T01 MTR_1g048030 29.756 205 122 5 126 310 144 346 1.98e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040640.01.T01 AT4G02790 72.014 293 82 0 87 379 79 371 1.09e-161 458
MsG0780040640.01.T01 AT2G41670 31.111 225 135 5 104 315 26 243 3.52e-26 108
MsG0780040640.01.T01 AT3G07050 29.066 289 173 7 116 380 128 408 4.02e-20 92.4
MsG0780040640.01.T01 AT4G10650 28.571 210 128 7 105 296 27 232 2.78e-14 73.9
MsG0780040640.01.T01 AT1G52980 26.007 273 158 10 117 370 208 455 1.58e-13 72.4

Find 117 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCAATGTTGTAGATAAT+TGG 0.235236 7:-80469337 MsG0780040640.01.T01:intron
ATCTCTTTAGGCCTCGTACT+TGG 0.253568 7:-80470778 MsG0780040640.01.T01:CDS
ATGAAAGGTGGGTTCGATTT+GGG 0.264909 7:-80466330 MsG0780040640.01.T01:intron
TGGTAATAAGAAGAGAATTT+TGG 0.284454 7:-80468252 MsG0780040640.01.T01:CDS
GGTATTGGACAGTGGTTTCC+TGG 0.286100 7:-80469137 MsG0780040640.01.T01:intron
TATGAAAGGTGGGTTCGATT+TGG 0.308400 7:-80466331 MsG0780040640.01.T01:intron
GAGGGACTGGGACCGATCTT+TGG 0.309126 7:-80469288 MsG0780040640.01.T01:CDS
ATTGGCAACAACACATTTGA+TGG 0.320305 7:-80469319 MsG0780040640.01.T01:CDS
TGGGAAAGATCTTGAGTTGC+TGG 0.331013 7:-80466311 MsG0780040640.01.T01:CDS
ACTCCTGGCCTTGGAGCCGC+TGG 0.335687 7:+80467156 None:intergenic
CTTGAGTTGCTGGATTCTCC+TGG 0.342603 7:-80466301 MsG0780040640.01.T01:CDS
AGTCACAGTATATCAGTATA+CGG 0.343485 7:+80465567 None:intergenic
TCTCTTTAGGCCTCGTACTT+GGG 0.346040 7:-80470777 MsG0780040640.01.T01:CDS
CTCAAGTACTTCATCTCTTT+AGG 0.347105 7:-80470790 MsG0780040640.01.T01:CDS
CTTGCGCTTCATTTGTTCAA+TGG 0.362304 7:-80465766 MsG0780040640.01.T01:CDS
CTGCTAATTCCTTTGCTAAC+CGG 0.374309 7:+80468014 None:intergenic
AAATTACGCGAGAGATATTC+AGG 0.380377 7:-80465611 MsG0780040640.01.T01:three_prime_UTR
GTTGATGGATGTTGTTATAG+AGG 0.386526 7:-80469072 MsG0780040640.01.T01:CDS
GAGCCTCAAATGTTCATAGA+AGG 0.399118 7:+80465526 None:intergenic
GTCTTCTCCAATGGGCAGCT+TGG 0.417848 7:-80468149 MsG0780040640.01.T01:CDS
CAAGGAACAACTTAAGTTGA+TGG 0.420000 7:-80469087 MsG0780040640.01.T01:CDS
CTCCAATGGGCAGCTTGGAA+TGG 0.425085 7:-80468144 MsG0780040640.01.T01:intron
GATGGTTCCGAAGGAGGGAC+TGG 0.425895 7:-80469301 MsG0780040640.01.T01:CDS
AGCGTCAGAGTCTTGCTTCT+AGG 0.428489 7:+80465642 None:intergenic
AAACCTTCTATGAACATTTG+AGG 0.430315 7:-80465529 MsG0780040640.01.T01:three_prime_UTR
TGCCCAGCGGCTCCAAGGCC+AGG 0.436405 7:-80467159 MsG0780040640.01.T01:CDS
CTCAAGTCTCTTGTAACTCC+TGG 0.448079 7:+80467141 None:intergenic
CTCTTTAGGCCTCGTACTTG+GGG 0.452219 7:-80470776 MsG0780040640.01.T01:CDS
CTCTCCAATGTCATCACATA+TGG 0.452328 7:+80466231 None:intergenic
AGGTTATGTGGCTCCTTAGT+TGG 0.452696 7:+80470727 None:intergenic
CTTAGTTGGCTTAATTCTCA+TGG 0.454623 7:+80470741 None:intergenic
CAGCTGATGTAAATGTTAAA+CGG 0.455115 7:-80467994 MsG0780040640.01.T01:CDS
TAGGTTCGAGCTGGAATAGT+TGG 0.459536 7:-80467237 MsG0780040640.01.T01:CDS
ATCGGTCCCAGTCCCTCCTT+CGG 0.468176 7:+80469294 None:intergenic
AACTGCAGATCGAAATGCTT+GGG 0.470581 7:-80468204 MsG0780040640.01.T01:CDS
GATGTCTTAGCAACGTAGGC+GGG 0.471576 7:+80470685 None:intergenic
ACATTCTTCTCTTTAACAAA+CGG 0.471895 7:+80467181 None:intergenic
CTTCGTTGGAGAGGCCTCCT+AGG 0.475968 7:-80465681 MsG0780040640.01.T01:CDS
TTAGAAAAGGTAGGTTTGGT+TGG 0.479606 7:-80465705 MsG0780040640.01.T01:CDS
TCTCTTGTAACTCCTGGCCT+TGG 0.481914 7:+80467147 None:intergenic
TGATAATGCATACCTACTGC+TGG 0.487418 7:+80466151 None:intergenic
TCATATTGCAAAAGCAGAAA+AGG 0.487875 7:-80469114 MsG0780040640.01.T01:CDS
CAAAGGACTACTTCCTCGTC+CGG 0.491033 7:-80467966 MsG0780040640.01.T01:intron
ACAAAGGTTGTCTTCTCCAA+TGG 0.491090 7:-80468158 MsG0780040640.01.T01:CDS
GTCACAGTATATCAGTATAC+GGG 0.498924 7:+80465568 None:intergenic
CACATAACCTCTCTAGAAGA+AGG 0.499106 7:-80470714 MsG0780040640.01.T01:CDS
ATAAATTCTATAACTTCTTG+AGG 0.500346 7:+80465314 None:intergenic
CGGACGAGGAAGTAGTCCTT+TGG 0.500629 7:+80467967 None:intergenic
TAGGTTTGGTTGGACTTCGT+TGG 0.503830 7:-80465695 MsG0780040640.01.T01:CDS
ATGGTTCCGAAGGAGGGACT+GGG 0.508412 7:-80469300 MsG0780040640.01.T01:CDS
AAACTTGTATCGTTTACAAA+GGG 0.508478 7:+80466025 None:intergenic
TTCTATAACTTCTTGAGGAA+AGG 0.509722 7:+80465319 None:intergenic
AACCATTCCAAGCTGCCCAT+TGG 0.512603 7:+80468142 None:intergenic
TTGACACTGATCTTTATCAC+TGG 0.513007 7:-80469258 MsG0780040640.01.T01:CDS
CAAAGGTTGTCTTCTCCAAT+GGG 0.513498 7:-80468157 MsG0780040640.01.T01:CDS
CATGAGAATTAAGCCAACTA+AGG 0.520657 7:-80470740 MsG0780040640.01.T01:CDS
TTGTAGATGGATCTATGGCT+TGG 0.521384 7:-80468272 MsG0780040640.01.T01:intron
GACTGGTCACTGATTCGCAT+TGG 0.525801 7:+80466271 None:intergenic
TTGAGTTGCTGGATTCTCCT+GGG 0.526414 7:-80466300 MsG0780040640.01.T01:CDS
CTTCTTCTAGAGAGGTTATG+TGG 0.527815 7:+80470715 None:intergenic
GAATGTGCCCAGCGGCTCCA+AGG 0.530559 7:-80467164 MsG0780040640.01.T01:CDS
TGATATACTGTGACTGTGAA+TGG 0.540299 7:-80465559 MsG0780040640.01.T01:three_prime_UTR
CATTTGATGGTTCCGAAGGA+GGG 0.543043 7:-80469306 MsG0780040640.01.T01:CDS
GTATACAAGTGTTGTACCAT+AGG 0.544026 7:-80465420 MsG0780040640.01.T01:three_prime_UTR
ATGATGCATACAAAATCCTA+TGG 0.544121 7:+80465404 None:intergenic
TTGTTATAGAGGTACGAGAC+GGG 0.546757 7:-80469061 MsG0780040640.01.T01:CDS
ACTATTGAATAGGTTCGAGC+TGG 0.552658 7:-80467246 MsG0780040640.01.T01:intron
ACATAACCTCTCTAGAAGAA+GGG 0.557199 7:-80470713 MsG0780040640.01.T01:CDS
TTCTAAAATCTGACAGGACA+CGG 0.558450 7:+80465722 None:intergenic
ACTTACCTGTGGATGACTTG+TGG 0.559160 7:+80469025 None:intergenic
TTGATTAAGTCTAGTAGAGG+TGG 0.559763 7:-80470619 MsG0780040640.01.T01:CDS
ATTCGCATTGGAAGTATCCC+AGG 0.560318 7:+80466283 None:intergenic
CAACTGCAGATCGAAATGCT+TGG 0.565332 7:-80468205 MsG0780040640.01.T01:CDS
CTCCTGGCCTTGGAGCCGCT+GGG 0.567018 7:+80467157 None:intergenic
ACATTTGATGGTTCCGAAGG+AGG 0.568118 7:-80469307 MsG0780040640.01.T01:CDS
CACATACTAAATACCTGCAC+AGG 0.571976 7:+80469220 None:intergenic
TTGGTTGGACTTCGTTGGAG+AGG 0.572853 7:-80465690 MsG0780040640.01.T01:CDS
TAGAAGCAACCTACCGGACG+AGG 0.573378 7:+80467953 None:intergenic
GTCAAGACCAGTCCAAAGAT+CGG 0.574666 7:+80469276 None:intergenic
GAAACTTGTATCGTTTACAA+AGG 0.575273 7:+80466024 None:intergenic
TCTTTAGGCCTCGTACTTGG+GGG 0.577150 7:-80470775 MsG0780040640.01.T01:CDS
TATAGAATTTATGCTTTGCG+TGG 0.586375 7:-80465303 None:intergenic
CTTACAAAGCTTCCAGCAGT+AGG 0.586408 7:-80466163 MsG0780040640.01.T01:intron
CTTTAGGCCTCGTACTTGGG+GGG 0.589503 7:-80470774 MsG0780040640.01.T01:CDS
AACACATTTGATGGTTCCGA+AGG 0.589714 7:-80469310 MsG0780040640.01.T01:CDS
CCTTCCCACTTAAAATACAC+AGG 0.592853 7:-80470645 MsG0780040640.01.T01:CDS
AAAAGCAGAAAAGGAACTCA+AGG 0.594084 7:-80469105 MsG0780040640.01.T01:CDS
GGTCACCCCTTCTTCTAGAG+AGG 0.594119 7:+80470707 None:intergenic
AGGGCACATTGAAGCTAGGC+CGG 0.597091 7:-80468033 MsG0780040640.01.T01:CDS
AATGTTAAACGGAGAGCCAA+AGG 0.598690 7:-80467983 MsG0780040640.01.T01:CDS
AATAGTTGGATACCCTAATG+TGG 0.603349 7:-80467223 MsG0780040640.01.T01:CDS
GTACAGGGCACATTGAAGCT+AGG 0.604959 7:-80468037 MsG0780040640.01.T01:intron
GTTGTCCACAAGTCATCCAC+AGG 0.607084 7:-80469030 MsG0780040640.01.T01:intron
GAAGCTAGGCCGGTTAGCAA+AGG 0.608408 7:-80468023 MsG0780040640.01.T01:CDS
ACTGGGACCGATCTTTGGAC+TGG 0.609653 7:-80469283 MsG0780040640.01.T01:CDS
CATAACCTCTCTAGAAGAAG+GGG 0.612307 7:-80470712 MsG0780040640.01.T01:CDS
CTTCCCACTTAAAATACACA+GGG 0.617682 7:-80470644 MsG0780040640.01.T01:CDS
TGATCTTTATCACTGGACAA+AGG 0.621272 7:-80469251 MsG0780040640.01.T01:CDS
ATAGTTGGATACCCTAATGT+GGG 0.621609 7:-80467222 MsG0780040640.01.T01:CDS
GCTTTGATTAAGTCTAGTAG+AGG 0.625376 7:-80470622 MsG0780040640.01.T01:CDS
CTTGCCATATGTGATGACAT+TGG 0.632886 7:-80466235 MsG0780040640.01.T01:CDS
TTTCGTGTAGACAGTGAATG+TGG 0.640512 7:-80466005 MsG0780040640.01.T01:CDS
AGATGTCTTAGCAACGTAGG+CGG 0.642178 7:+80470684 None:intergenic
AACATCTGACTTCACCTAGG+AGG 0.645330 7:+80465667 None:intergenic
ATGTCTTAGCAACGTAGGCG+GGG 0.655020 7:+80470686 None:intergenic
CAGGAGTTACAAGAGACTTG+AGG 0.662103 7:-80467140 MsG0780040640.01.T01:intron
AGTTGGCTTAATTCTCATGG+CGG 0.691081 7:+80470744 None:intergenic
ATGAGATGTCTTAGCAACGT+AGG 0.696029 7:+80470681 None:intergenic
GTAAACATCTGACTTCACCT+AGG 0.697123 7:+80465664 None:intergenic
ACTTCTTGAGGAAAGGCACG+AGG 0.700202 7:+80465326 None:intergenic
TGGAGAGAGGTCTTATGATG+TGG 0.703310 7:-80466215 MsG0780040640.01.T01:CDS
TTATAGAGGTACGAGACGGG+CGG 0.703873 7:-80469058 MsG0780040640.01.T01:CDS
TATGTGATGACATTGGAGAG+AGG 0.708423 7:-80466228 MsG0780040640.01.T01:CDS
TGTGGATGACTTGTGGACAA+CGG 0.717355 7:+80469032 None:intergenic
GTTGTTATAGAGGTACGAGA+CGG 0.721407 7:-80469062 MsG0780040640.01.T01:CDS
TCACAGTATATCAGTATACG+GGG 0.726453 7:+80465569 None:intergenic
AAAGAGAAGAATGTGCCCAG+CGG 0.752942 7:-80467172 MsG0780040640.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATCAAAAAAATTGAA+CGG - Chr7:80469181-80469200 MsG0780040640.01.T01:intron 10.0%
!! AAATAAAAAATAATCACAAT+TGG + Chr7:80468185-80468204 None:intergenic 10.0%
!! AAATAAATAAAATACTAACA+TGG + Chr7:80469438-80469457 None:intergenic 10.0%
!! GTGAAAAAATAATAATATTA+TGG + Chr7:80466688-80466707 None:intergenic 10.0%
!! TATTATTTCATTAATATGAA+AGG - Chr7:80469756-80469775 MsG0780040640.01.T01:intron 10.0%
!!! AAATTTTTTAAACATTGAAT+TGG + Chr7:80467688-80467707 None:intergenic 10.0%
!!! ATTATCATGTAATTATTTTT+TGG - Chr7:80470636-80470655 MsG0780040640.01.T01:CDS 10.0%
!!! ATTTCTTATTTACAAAATAA+AGG - Chr7:80468544-80468563 MsG0780040640.01.T01:intron 10.0%
!!! GTTAGTATTTTATTTATTTT+AGG - Chr7:80469439-80469458 MsG0780040640.01.T01:intron 10.0%
!!! GTTTTTTGATATAAATTTAA+GGG + Chr7:80466150-80466169 None:intergenic 10.0%
!! AAATAATAATATTATGGTGA+CGG + Chr7:80466682-80466701 None:intergenic 15.0%
!! AATGATTTGAAAACAATTAA+AGG + Chr7:80468767-80468786 None:intergenic 15.0%
!! AGAAATGTTAAAAAGTAAAA+TGG + Chr7:80465847-80465866 None:intergenic 15.0%
!! AGTAAAAAATGATAAGTATT+TGG + Chr7:80465982-80466001 None:intergenic 15.0%
!! GTAAAAAATGATAAGTATTT+GGG + Chr7:80465981-80466000 None:intergenic 15.0%
!! TAGAATTATTAAACAAAAGA+CGG + Chr7:80468660-80468679 None:intergenic 15.0%
!! TGTGTGAATAAAATAAAATT+AGG + Chr7:80470153-80470172 None:intergenic 15.0%
!! TTTATTTCCTTAAATATCTT+CGG - Chr7:80468996-80469015 MsG0780040640.01.T01:intron 15.0%
!!! AAGTTCTTTTGAAAATTTAA+CGG - Chr7:80469588-80469607 MsG0780040640.01.T01:intron 15.0%
!!! CGTTTTTTGATATAAATTTA+AGG + Chr7:80466151-80466170 None:intergenic 15.0%
!! AATACAATAAATCATGTACT+CGG + Chr7:80469740-80469759 None:intergenic 20.0%
!! ACATTCATAAAACAATGTTA+AGG + Chr7:80468411-80468430 None:intergenic 20.0%
!! ATAAATTCTATAACTTCTTG+AGG + Chr7:80470790-80470809 None:intergenic 20.0%
!! ATTACAAATTCTATGAGTAA+AGG + Chr7:80465790-80465809 None:intergenic 20.0%
!! ATTTCATGATACTATTGAAT+AGG - Chr7:80468845-80468864 MsG0780040640.01.T01:intron 20.0%
!! ATTTCATTAATATGAAAGGT+GGG - Chr7:80469760-80469779 MsG0780040640.01.T01:intron 20.0%
!! CAAAAAACAGAACTTAAATT+AGG + Chr7:80466616-80466635 None:intergenic 20.0%
!! TACATGATATCAAATTAAGA+AGG + Chr7:80470287-80470306 None:intergenic 20.0%
!! TACTTATGAAACAAATATTG+TGG + Chr7:80467653-80467672 None:intergenic 20.0%
!! TATTTCATTAATATGAAAGG+TGG - Chr7:80469759-80469778 MsG0780040640.01.T01:intron 20.0%
!! TCGCAATTAATCAATTTATT+TGG - Chr7:80469379-80469398 MsG0780040640.01.T01:intron 20.0%
!! TGAAAAAACATACGAAAAAA+TGG + Chr7:80467565-80467584 None:intergenic 20.0%
!! TTACAAATTCTATGAGTAAA+GGG + Chr7:80465789-80465808 None:intergenic 20.0%
!!! AAAGAAATAAGTATTTCTGT+AGG - Chr7:80468270-80468289 MsG0780040640.01.T01:intron 20.0%
!!! AACACATGAAATTCAATTTT+GGG + Chr7:80466389-80466408 None:intergenic 20.0%
!!! AAGAAATAAGTATTTCTGTA+GGG - Chr7:80468271-80468290 MsG0780040640.01.T01:intron 20.0%
!!! ATAAAAAAGTTTTACACTGT+CGG - Chr7:80466574-80466593 MsG0780040640.01.T01:intron 20.0%
!!! CAGCTAGTATTTTTTATAAT+TGG + Chr7:80469515-80469534 None:intergenic 20.0%
!!! CTAATTTAAGTTCTGTTTTT+TGG - Chr7:80466614-80466633 MsG0780040640.01.T01:intron 20.0%
!!! CTTCAATCTAAAAGATTTTA+CGG - Chr7:80466047-80466066 MsG0780040640.01.T01:intron 20.0%
!!! CTTTTCTATATCTAAGAATA+AGG - Chr7:80468227-80468246 MsG0780040640.01.T01:CDS 20.0%
!!! TGGTGCATATTTAAAATATT+TGG + Chr7:80465827-80465846 None:intergenic 20.0%
!!! TTGTATTGATTCAATTCTTT+TGG - Chr7:80467360-80467379 MsG0780040640.01.T01:intron 20.0%
! AAACTTGTATCGTTTACAAA+GGG + Chr7:80470079-80470098 None:intergenic 25.0%
! AACATTGGTACATAGAATAA+AGG + Chr7:80467133-80467152 None:intergenic 25.0%
! AATTGTGGAGAAATTGAAAT+TGG + Chr7:80466280-80466299 None:intergenic 25.0%
! ACATTCTTCTCTTTAACAAA+CGG + Chr7:80468923-80468942 None:intergenic 25.0%
! AGATATAGAAAAGTAATCAC+AGG + Chr7:80468220-80468239 None:intergenic 25.0%
! AGGAAGAAAAAAAAATTCAC+TGG + Chr7:80470133-80470152 None:intergenic 25.0%
! ATAAACTCTAAATGCAAGAA+AGG + Chr7:80470226-80470245 None:intergenic 25.0%
! ATGACAAGCAATTATTGAAT+AGG + Chr7:80467474-80467493 None:intergenic 25.0%
! CAACTGAATGAAAAATTAAG+AGG + Chr7:80467797-80467816 None:intergenic 25.0%
! CACATTAACAAAATAACAGT+TGG + Chr7:80468685-80468704 None:intergenic 25.0%
! TAACCAAAATATGATTCCAA+GGG + Chr7:80469986-80470005 None:intergenic 25.0%
! TAAGGAAACATATCGTTTAT+TGG - Chr7:80468245-80468264 MsG0780040640.01.T01:CDS 25.0%
! TACAAATTCTATGAGTAAAG+GGG + Chr7:80465788-80465807 None:intergenic 25.0%
! TAGCTAGAAATAAATGAACT+GGG + Chr7:80469670-80469689 None:intergenic 25.0%
! TATGTTTCCGAAGATATTTA+AGG + Chr7:80469006-80469025 None:intergenic 25.0%
! TCACATAATGCTTCTTAATT+TGG - Chr7:80467715-80467734 MsG0780040640.01.T01:intron 25.0%
! TGACATTGCTAATAATCTAA+CGG + Chr7:80466727-80466746 None:intergenic 25.0%
! TTAACCAAAATATGATTCCA+AGG + Chr7:80469987-80470006 None:intergenic 25.0%
! TTCTCTATGAATCTACAATT+AGG + Chr7:80470314-80470333 None:intergenic 25.0%
!! ACACAAGAAATGAACATTTT+TGG + Chr7:80467107-80467126 None:intergenic 25.0%
!! GAAAAATGTATAATCGACTT+AGG - Chr7:80469475-80469494 MsG0780040640.01.T01:intron 25.0%
!! GAACACATGAAATTCAATTT+TGG + Chr7:80466390-80466409 None:intergenic 25.0%
!! TGGTAATAAGAAGAGAATTT+TGG - Chr7:80467849-80467868 MsG0780040640.01.T01:intron 25.0%
!!! AATAAAAGTACCCAATCTTA+AGG - Chr7:80465701-80465720 MsG0780040640.01.T01:CDS 25.0%
!!! ATGTGCATTATTTTGTACTA+TGG - Chr7:80468700-80468719 MsG0780040640.01.T01:intron 25.0%
!!! CAACTCAATTTTGACTTAAA+AGG - Chr7:80468309-80468328 MsG0780040640.01.T01:intron 25.0%
!!! TTGATATTTTAGTTGTGTGT+GGG + Chr7:80469171-80469190 None:intergenic 25.0%
!!! TTTGATATTTTAGTTGTGTG+TGG + Chr7:80469172-80469191 None:intergenic 25.0%
AAACCTTCTATGAACATTTG+AGG - Chr7:80470572-80470591 MsG0780040640.01.T01:intron 30.0%
ACAACAAAATAAACCAGCAT+TGG + Chr7:80469318-80469337 None:intergenic 30.0%
AGTCACAGTATATCAGTATA+CGG + Chr7:80470537-80470556 None:intergenic 30.0%
ATATGATAAATGAATGACCG+AGG + Chr7:80465621-80465640 None:intergenic 30.0%
ATGACCACACTATAAATAAG+AGG - Chr7:80465584-80465603 MsG0780040640.01.T01:three_prime_UTR 30.0%
ATGATGCATACAAAATCCTA+TGG + Chr7:80470700-80470719 None:intergenic 30.0%
CACTCAATGTTGTAGATAAT+TGG - Chr7:80466764-80466783 MsG0780040640.01.T01:intron 30.0%
CAGCTGATGTAAATGTTAAA+CGG - Chr7:80468107-80468126 MsG0780040640.01.T01:intron 30.0%
CTAGCTAGAAATAAATGAAC+TGG + Chr7:80469671-80469690 None:intergenic 30.0%
GAAACTTGTATCGTTTACAA+AGG + Chr7:80470080-80470099 None:intergenic 30.0%
GATGATAAAATGTACCAATC+AGG + Chr7:80467421-80467440 None:intergenic 30.0%
GGTGTTCATGATAACATTAT+GGG + Chr7:80469143-80469162 None:intergenic 30.0%
TATGATAAATGAATGACCGA+GGG + Chr7:80465620-80465639 None:intergenic 30.0%
TATTGATATAGTCTCTCACA+TGG + Chr7:80465757-80465776 None:intergenic 30.0%
TATTTCCTGGAATGTTAACT+TGG + Chr7:80469405-80469424 None:intergenic 30.0%
TCATATTGCAAAAGCAGAAA+AGG - Chr7:80466987-80467006 MsG0780040640.01.T01:intron 30.0%
TGGAAAACAACAATATTTCC+TGG + Chr7:80469418-80469437 None:intergenic 30.0%
TTATAGATAGCTTATGAAGG+TGG + Chr7:80467541-80467560 None:intergenic 30.0%
TTCTATAACTTCTTGAGGAA+AGG + Chr7:80470785-80470804 None:intergenic 30.0%
TTCTATTTGGTCTGAATTGT+GGG + Chr7:80466479-80466498 None:intergenic 30.0%
TTGTGCTAAATTGCATATTG+TGG - Chr7:80467237-80467256 MsG0780040640.01.T01:CDS 30.0%
! ACATCATGGAGTCTTTTTAT+TGG - Chr7:80466543-80466562 MsG0780040640.01.T01:intron 30.0%
! AGTTTTTGAACATTGAGATC+AGG + Chr7:80470026-80470045 None:intergenic 30.0%
! ATTGGTACATTTTATCATCC+AGG - Chr7:80467422-80467441 MsG0780040640.01.T01:intron 30.0%
! TCTTGTGTAATTCGTGTTTT+CGG - Chr7:80466416-80466435 MsG0780040640.01.T01:intron 30.0%
! TTGGTACATTTTATCATCCA+GGG - Chr7:80467423-80467442 MsG0780040640.01.T01:intron 30.0%
!! AAGTTACATTTTTCGGCTTA+CGG + Chr7:80469263-80469282 None:intergenic 30.0%
!! AGCACAAAGTATTGTCAAAT+AGG + Chr7:80467224-80467243 None:intergenic 30.0%
!! GATTTTAGAAAAGGTAGGTT+TGG - Chr7:80470392-80470411 MsG0780040640.01.T01:intron 30.0%
!! GCACAAAGTATTGTCAAATA+GGG + Chr7:80467223-80467242 None:intergenic 30.0%
!! TGTCAGATTTTAGAAAAGGT+AGG - Chr7:80470387-80470406 MsG0780040640.01.T01:intron 30.0%
!!! CTGGTTTATTTTGTTGTAAG+TGG - Chr7:80469321-80469340 MsG0780040640.01.T01:CDS 30.0%
!!! TACCTTTTCTAAAATCTGAC+AGG + Chr7:80470388-80470407 None:intergenic 30.0%
!!! TGATATTTTAGTTGTGTGTG+GGG + Chr7:80469170-80469189 None:intergenic 30.0%
AAAAGCAGAAAAGGAACTCA+AGG - Chr7:80466996-80467015 MsG0780040640.01.T01:intron 35.0%
AAAGACTCCATGATGTTCAA+TGG + Chr7:80466539-80466558 None:intergenic 35.0%
AAAGGCCTAACTACTGTATT+TGG + Chr7:80467759-80467778 None:intergenic 35.0%
AAATTACGCGAGAGATATTC+AGG - Chr7:80470490-80470509 MsG0780040640.01.T01:intron 35.0%
AACAAGGGATCTTGAAAACA+CGG + Chr7:80468019-80468038 None:intergenic 35.0%
AACGTTTATCTTGTGAGCTT+TGG + Chr7:80465954-80465973 None:intergenic 35.0%
AAGCCGAAAAATGTAACTTC+TGG - Chr7:80469264-80469283 MsG0780040640.01.T01:CDS 35.0%
AATAGTTGGATACCCTAATG+TGG - Chr7:80468878-80468897 MsG0780040640.01.T01:intron 35.0%
ACGTTTATCTTGTGAGCTTT+GGG + Chr7:80465953-80465972 None:intergenic 35.0%
AGATCTTTCAAACACTCCAT+CGG - Chr7:80467614-80467633 MsG0780040640.01.T01:intron 35.0%
AGCCGAAAAATGTAACTTCT+GGG - Chr7:80469265-80469284 MsG0780040640.01.T01:CDS 35.0%
AGGATCAGATATGTTGAACA+AGG + Chr7:80468035-80468054 None:intergenic 35.0%
ATAGATCCATCTACAAAAGC+AGG + Chr7:80467825-80467844 None:intergenic 35.0%
ATAGTTGGATACCCTAATGT+GGG - Chr7:80468879-80468898 MsG0780040640.01.T01:intron 35.0%
ATTGGCAACAACACATTTGA+TGG - Chr7:80466782-80466801 MsG0780040640.01.T01:intron 35.0%
ATTGGTGGAGATAGAGAATT+TGG + Chr7:80466262-80466281 None:intergenic 35.0%
ATTTATAGTGTGGTCATACG+AGG + Chr7:80465581-80465600 None:intergenic 35.0%
CACGAATTACACAAGAATGA+AGG + Chr7:80466412-80466431 None:intergenic 35.0%
CATCATCATCATCTTGCTTA+TGG - Chr7:80466233-80466252 MsG0780040640.01.T01:CDS 35.0%
CATGAGAATTAAGCCAACTA+AGG - Chr7:80465361-80465380 MsG0780040640.01.T01:three_prime_UTR 35.0%
CATTGGTGAACCTTAAGATT+GGG + Chr7:80465714-80465733 None:intergenic 35.0%
CATTTCCTTATTCCTAGAGA+TGG + Chr7:80468344-80468363 None:intergenic 35.0%
CTCAAGTACTTCATCTCTTT+AGG - Chr7:80465311-80465330 MsG0780040640.01.T01:three_prime_UTR 35.0%
CTTCCCACTTAAAATACACA+GGG - Chr7:80465457-80465476 MsG0780040640.01.T01:three_prime_UTR 35.0%
CTTCTATTTGGTCTGAATTG+TGG + Chr7:80466480-80466499 None:intergenic 35.0%
GAAAAGTAATCACAGGAAAG+CGG + Chr7:80468213-80468232 None:intergenic 35.0%
GATCCTATGCTTTATGTACA+GGG - Chr7:80468049-80468068 MsG0780040640.01.T01:intron 35.0%
GCTTCCCTATCCAAATAAAA+CGG - Chr7:80469561-80469580 MsG0780040640.01.T01:intron 35.0%
GCTTTGATTAAGTCTAGTAG+AGG - Chr7:80465479-80465498 MsG0780040640.01.T01:three_prime_UTR 35.0%
GGAGGAGAAAAAATCTTGTT+TGG + Chr7:80467990-80468009 None:intergenic 35.0%
GGATCAGATATGTTGAACAA+GGG + Chr7:80468034-80468053 None:intergenic 35.0%
GGCTTATAGATAGCTTATGA+AGG + Chr7:80467544-80467563 None:intergenic 35.0%
GGGTGTTCATGATAACATTA+TGG + Chr7:80469144-80469163 None:intergenic 35.0%
GTCACAGTATATCAGTATAC+GGG + Chr7:80470536-80470555 None:intergenic 35.0%
TATGCTGAATATCAAGAGAC+AGG + Chr7:80469230-80469249 None:intergenic 35.0%
TATGTACCAATGTTGTCTAG+CGG - Chr7:80467139-80467158 MsG0780040640.01.T01:intron 35.0%
TCACAGTATATCAGTATACG+GGG + Chr7:80470535-80470554 None:intergenic 35.0%
TCATTGGTGAACCTTAAGAT+TGG + Chr7:80465715-80465734 None:intergenic 35.0%
TGATATACTGTGACTGTGAA+TGG - Chr7:80470542-80470561 MsG0780040640.01.T01:intron 35.0%
TGATCCTATGCTTTATGTAC+AGG - Chr7:80468048-80468067 MsG0780040640.01.T01:intron 35.0%
TGATCTTTATCACTGGACAA+AGG - Chr7:80466850-80466869 MsG0780040640.01.T01:intron 35.0%
TGATTAATTGCGACTTACGT+TGG + Chr7:80469372-80469391 None:intergenic 35.0%
TGCATCCAAATACAGTAGTT+AGG - Chr7:80467751-80467770 MsG0780040640.01.T01:intron 35.0%
TGTGCACTATATGTGTGTAA+TGG - Chr7:80466900-80466919 MsG0780040640.01.T01:intron 35.0%
TGTGGAGAAATTGAAATTGG+TGG + Chr7:80466277-80466296 None:intergenic 35.0%
TTATAGCCTTTGTTCAATGC+AGG - Chr7:80470045-80470064 MsG0780040640.01.T01:intron 35.0%
TTATCATCCAGGGAATGTTT+GGG - Chr7:80467433-80467452 MsG0780040640.01.T01:intron 35.0%
TTGACACTGATCTTTATCAC+TGG - Chr7:80466843-80466862 MsG0780040640.01.T01:intron 35.0%
TTGATTAAGTCTAGTAGAGG+TGG - Chr7:80465482-80465501 MsG0780040640.01.T01:three_prime_UTR 35.0%
TTGTACTATGGAAGTAGATG+TGG - Chr7:80468712-80468731 MsG0780040640.01.T01:intron 35.0%
TTTATCATCCAGGGAATGTT+TGG - Chr7:80467432-80467451 MsG0780040640.01.T01:intron 35.0%
! ACATAACCTCTCTAGAAGAA+GGG - Chr7:80465388-80465407 MsG0780040640.01.T01:three_prime_UTR 35.0%
! ACCCCAGAAGTTACATTTTT+CGG + Chr7:80469270-80469289 None:intergenic 35.0%
! AGAGATGATTTTCCCACATT+AGG + Chr7:80468894-80468913 None:intergenic 35.0%
! CATCCCTTGGAATCATATTT+TGG - Chr7:80469980-80469999 MsG0780040640.01.T01:intron 35.0%
! CTTAGTTGGCTTAATTCTCA+TGG + Chr7:80465363-80465382 None:intergenic 35.0%
! GAAGCCTCTTATTTATAGTG+TGG + Chr7:80465591-80465610 None:intergenic 35.0%
! GAGATGATTTTCCCACATTA+GGG + Chr7:80468893-80468912 None:intergenic 35.0%
! GTATACAAGTGTTGTACCAT+AGG - Chr7:80470681-80470700 MsG0780040640.01.T01:CDS 35.0%
! GTTGATGGATGTTGTTATAG+AGG - Chr7:80467029-80467048 MsG0780040640.01.T01:intron 35.0%
! TGCTTTTGTAGATGGATCTA+TGG - Chr7:80467824-80467843 MsG0780040640.01.T01:intron 35.0%
! TGTTTGCTAAAATTCCGCTA+TGG - Chr7:80467269-80467288 MsG0780040640.01.T01:intron 35.0%
! TTAGAAAAGGTAGGTTTGGT+TGG - Chr7:80470396-80470415 MsG0780040640.01.T01:intron 35.0%
! TTATTTGGATAGGGAAGCAT+AGG + Chr7:80469559-80469578 None:intergenic 35.0%
! TTTTACTAGGCATGGAACAA+AGG - Chr7:80467927-80467946 MsG0780040640.01.T01:intron 35.0%
!! AAAGCCCTGTGTATTTTAAG+TGG + Chr7:80465464-80465483 None:intergenic 35.0%
!! AAGCCCTGTGTATTTTAAGT+GGG + Chr7:80465463-80465482 None:intergenic 35.0%
!! CAAGGAACAACTTAAGTTGA+TGG - Chr7:80467014-80467033 MsG0780040640.01.T01:intron 35.0%
!! CTTTTCCATCTCTAGGAATA+AGG - Chr7:80468336-80468355 MsG0780040640.01.T01:intron 35.0%
!! GTCCTGTCAGATTTTAGAAA+AGG - Chr7:80470383-80470402 MsG0780040640.01.T01:intron 35.0%
!! TGACAGAAGAAGTATCTCAT+TGG + Chr7:80465731-80465750 None:intergenic 35.0%
!! TTCTAAAATCTGACAGGACA+CGG + Chr7:80470382-80470401 None:intergenic 35.0%
!!! ACTAGCTGTTCATTAGCTTT+TGG - Chr7:80469527-80469546 MsG0780040640.01.T01:intron 35.0%
!!! GATATTTTAGTTGTGTGTGG+GGG + Chr7:80469169-80469188 None:intergenic 35.0%
!!! TCAATTTTGGGTTACCTGAA+TGG + Chr7:80466377-80466396 None:intergenic 35.0%
!!! TTTTGGTGTTAACTTACCTG+TGG + Chr7:80467090-80467109 None:intergenic 35.0%
AAACAATGTTAAGGAGCTGC+AGG + Chr7:80468402-80468421 None:intergenic 40.0%
AACTGCAGATCGAAATGCTT+GGG - Chr7:80467897-80467916 MsG0780040640.01.T01:intron 40.0%
AATGTTAAACGGAGAGCCAA+AGG - Chr7:80468118-80468137 MsG0780040640.01.T01:intron 40.0%
AATTGCTAGAAGCAACCTAC+CGG + Chr7:80468157-80468176 None:intergenic 40.0%
ACAAAGGTTGTCTTCTCCAA+TGG - Chr7:80467943-80467962 MsG0780040640.01.T01:intron 40.0%
ACGAAACCATGAGCAATGAT+AGG + Chr7:80467396-80467415 None:intergenic 40.0%
ACTACAACGCTATACCATAG+CGG + Chr7:80467286-80467305 None:intergenic 40.0%
ACTACTGTATTTGGATGCAC+TGG + Chr7:80467750-80467769 None:intergenic 40.0%
ACTATTGAATAGGTTCGAGC+TGG - Chr7:80468855-80468874 MsG0780040640.01.T01:intron 40.0%
AGCACTAGCAGCAATAAACA+TGG - Chr7:80466186-80466205 MsG0780040640.01.T01:CDS 40.0%
ATGAGATGTCTTAGCAACGT+AGG + Chr7:80465423-80465442 None:intergenic 40.0%
CAAAGGTTGTCTTCTCCAAT+GGG - Chr7:80467944-80467963 MsG0780040640.01.T01:intron 40.0%
CACATACTAAATACCTGCAC+AGG + Chr7:80466884-80466903 None:intergenic 40.0%
CCTTCCCACTTAAAATACAC+AGG - Chr7:80465456-80465475 MsG0780040640.01.T01:three_prime_UTR 40.0%
CGAAACCATGAGCAATGATA+GGG + Chr7:80467395-80467414 None:intergenic 40.0%
CTCTCCAATGTCATCACATA+TGG + Chr7:80469873-80469892 None:intergenic 40.0%
CTGACAGTGCATCTTCTATT+TGG + Chr7:80466492-80466511 None:intergenic 40.0%
CTGCTAATTCCTTTGCTAAC+CGG + Chr7:80468090-80468109 None:intergenic 40.0%
CTTGCATCCATTGAACATCA+TGG - Chr7:80466529-80466548 MsG0780040640.01.T01:intron 40.0%
CTTGCCATATGTGATGACAT+TGG - Chr7:80469866-80469885 MsG0780040640.01.T01:intron 40.0%
CTTGCGCTTCATTTGTTCAA+TGG - Chr7:80470335-80470354 MsG0780040640.01.T01:intron 40.0%
GAGCCTCAAATGTTCATAGA+AGG + Chr7:80470578-80470597 None:intergenic 40.0%
GCCGAAAAATGTAACTTCTG+GGG - Chr7:80469266-80469285 MsG0780040640.01.T01:CDS 40.0%
GTAAACATCTGACTTCACCT+AGG + Chr7:80470440-80470459 None:intergenic 40.0%
GTCAAATAGGGTCTATAGCA+GGG + Chr7:80467211-80467230 None:intergenic 40.0%
TATGTGATGACATTGGAGAG+AGG - Chr7:80469873-80469892 MsG0780040640.01.T01:intron 40.0%
TCATGGTTTCGTTACCTGAT+TGG - Chr7:80467404-80467423 MsG0780040640.01.T01:intron 40.0%
TCCCTATCCAAATAAAACGG+TGG - Chr7:80469564-80469583 MsG0780040640.01.T01:intron 40.0%
TGATATAGTCTCTCACATGG+TGG + Chr7:80465754-80465773 None:intergenic 40.0%
TGGAAAATGCATAACACCGA+TGG + Chr7:80467633-80467652 None:intergenic 40.0%
TGTCAAATAGGGTCTATAGC+AGG + Chr7:80467212-80467231 None:intergenic 40.0%
TTATCATGACATGCATCCCT+TGG - Chr7:80469967-80469986 MsG0780040640.01.T01:intron 40.0%
TTGATTACCCAAACATTCCC+TGG + Chr7:80467443-80467462 None:intergenic 40.0%
TTGGTCTGAATTGTGGGTTT+GGG + Chr7:80466473-80466492 None:intergenic 40.0%
TTGTAGATGGATCTATGGCT+TGG - Chr7:80467829-80467848 MsG0780040640.01.T01:intron 40.0%
TTGTTTCCTGACGCTAATGT+TGG - Chr7:80469068-80469087 MsG0780040640.01.T01:CDS 40.0%
TTTCGTGTAGACAGTGAATG+TGG - Chr7:80470096-80470115 MsG0780040640.01.T01:intron 40.0%
TTTGGCCAAGTTAACATTCC+AGG - Chr7:80469397-80469416 MsG0780040640.01.T01:intron 40.0%
TTTGGTCTGAATTGTGGGTT+TGG + Chr7:80466474-80466493 None:intergenic 40.0%
! AACACATTTGATGGTTCCGA+AGG - Chr7:80466791-80466810 MsG0780040640.01.T01:intron 40.0%
! AGGTATCGTCGTAGTACAAA+AGG + Chr7:80467777-80467796 None:intergenic 40.0%
! AGTTGGCTTAATTCTCATGG+CGG + Chr7:80465360-80465379 None:intergenic 40.0%
! ATGAAAGGTGGGTTCGATTT+GGG - Chr7:80469771-80469790 MsG0780040640.01.T01:intron 40.0%
! CACATAACCTCTCTAGAAGA+AGG - Chr7:80465387-80465406 MsG0780040640.01.T01:three_prime_UTR 40.0%
! CATAACCTCTCTAGAAGAAG+GGG - Chr7:80465389-80465408 MsG0780040640.01.T01:three_prime_UTR 40.0%
! CTTCTTCTAGAGAGGTTATG+TGG + Chr7:80465389-80465408 None:intergenic 40.0%
! GAACTGGGATAAACTTTTGC+AGG + Chr7:80469655-80469674 None:intergenic 40.0%
! GTTGTTATAGAGGTACGAGA+CGG - Chr7:80467039-80467058 MsG0780040640.01.T01:intron 40.0%
! TATGAAAGGTGGGTTCGATT+TGG - Chr7:80469770-80469789 MsG0780040640.01.T01:intron 40.0%
! TGATAATGCATACCTACTGC+TGG + Chr7:80469953-80469972 None:intergenic 40.0%
! TGCTGATTACTCCTTGGTAT+TGG - Chr7:80466949-80466968 MsG0780040640.01.T01:intron 40.0%
! TTGTTATAGAGGTACGAGAC+GGG - Chr7:80467040-80467059 MsG0780040640.01.T01:intron 40.0%
!! AGGACTACTTTTCCATCTCT+AGG - Chr7:80468329-80468348 MsG0780040640.01.T01:intron 40.0%
!! CAAGTTTTATAGCTGCTGAC+TGG + Chr7:80469850-80469869 None:intergenic 40.0%
!! CCTGTGTATTTTAAGTGGGA+AGG + Chr7:80465459-80465478 None:intergenic 40.0%
!! CTTGGGCAGAGTATTTTACT+AGG - Chr7:80467914-80467933 MsG0780040640.01.T01:intron 40.0%
!! GAACTTGCCACCGTTTTATT+TGG + Chr7:80469574-80469593 None:intergenic 40.0%
!! GCAGAGTATTTTACTAGGCA+TGG - Chr7:80467919-80467938 MsG0780040640.01.T01:intron 40.0%
!! GTTACTCCTGCTTTTGTAGA+TGG - Chr7:80467816-80467835 MsG0780040640.01.T01:intron 40.0%
!! TCTGCTTTTGCAATATGACC+AGG + Chr7:80466985-80467004 None:intergenic 40.0%
!! TTTGAGTGCTGATTACTCCT+TGG - Chr7:80466943-80466962 MsG0780040640.01.T01:intron 40.0%
!!! ATTTTGGGTTACCTGAATGG+TGG + Chr7:80466374-80466393 None:intergenic 40.0%
!!! GCCACCGTTTTATTTGGATA+GGG + Chr7:80469568-80469587 None:intergenic 40.0%
!!! TGCCACCGTTTTATTTGGAT+AGG + Chr7:80469569-80469588 None:intergenic 40.0%
!!! TTTTGGGTTACCTGAATGGT+GGG + Chr7:80466373-80466392 None:intergenic 40.0%
AAAGAGAAGAATGTGCCCAG+CGG - Chr7:80468929-80468948 MsG0780040640.01.T01:intron 45.0%
AACATCTGACTTCACCTAGG+AGG + Chr7:80470437-80470456 None:intergenic 45.0%
ACAGTACCAACATTAGCGTC+AGG + Chr7:80469077-80469096 None:intergenic 45.0%
ACTTACCTGTGGATGACTTG+TGG + Chr7:80467079-80467098 None:intergenic 45.0%
AGATGTCTTAGCAACGTAGG+CGG + Chr7:80465420-80465439 None:intergenic 45.0%
AGCAATCCGCTAGACAACAT+TGG + Chr7:80467148-80467167 None:intergenic 45.0%
AGGTTATGTGGCTCCTTAGT+TGG + Chr7:80465377-80465396 None:intergenic 45.0%
AGTGTGGTCATACGAGGTAA+TGG + Chr7:80465575-80465594 None:intergenic 45.0%
ATCTCAATCTCCCACCATTC+AGG - Chr7:80466360-80466379 MsG0780040640.01.T01:intron 45.0%
ATCTCTTTAGGCCTCGTACT+TGG - Chr7:80465323-80465342 MsG0780040640.01.T01:three_prime_UTR 45.0%
ATCTTGAAAACACGGAGAGG+TGG + Chr7:80468011-80468030 None:intergenic 45.0%
CAACTGCAGATCGAAATGCT+TGG - Chr7:80467896-80467915 MsG0780040640.01.T01:intron 45.0%
CAGGAGTTACAAGAGACTTG+AGG - Chr7:80468961-80468980 MsG0780040640.01.T01:intron 45.0%
CTCAAGTCTCTTGTAACTCC+TGG + Chr7:80468963-80468982 None:intergenic 45.0%
CTTACAAAGCTTCCAGCAGT+AGG - Chr7:80469938-80469957 MsG0780040640.01.T01:intron 45.0%
GAAACCACTGTCCAATACCA+AGG + Chr7:80466963-80466982 None:intergenic 45.0%
GATAAATGAATGACCGAGGG+AGG + Chr7:80465617-80465636 None:intergenic 45.0%
GTCAAGACCAGTCCAAAGAT+CGG + Chr7:80466828-80466847 None:intergenic 45.0%
GTGCCCTGTACATAAAGCAT+AGG + Chr7:80468055-80468074 None:intergenic 45.0%
GTGTGGTCATACGAGGTAAT+GGG + Chr7:80465574-80465593 None:intergenic 45.0%
TAGGTTCGAGCTGGAATAGT+TGG - Chr7:80468864-80468883 MsG0780040640.01.T01:intron 45.0%
TCTCGACCTGCATTGAACAA+AGG + Chr7:80470054-80470073 None:intergenic 45.0%
TCTCTTTAGGCCTCGTACTT+GGG - Chr7:80465324-80465343 MsG0780040640.01.T01:three_prime_UTR 45.0%
TGAGCTCAAGCAAGAAACGA+TGG - Chr7:80469696-80469715 MsG0780040640.01.T01:intron 45.0%
TGCTTCCCTATCATTGCTCA+TGG - Chr7:80467387-80467406 MsG0780040640.01.T01:intron 45.0%
! AAAGGTTTTACGACCTGTGC+AGG - Chr7:80466868-80466887 MsG0780040640.01.T01:intron 45.0%
! ACATTTGATGGTTCCGAAGG+AGG - Chr7:80466794-80466813 MsG0780040640.01.T01:intron 45.0%
! CATTTGATGGTTCCGAAGGA+GGG - Chr7:80466795-80466814 MsG0780040640.01.T01:intron 45.0%
! GAACGGACTTGAAGTCCTAA+TGG - Chr7:80469198-80469217 MsG0780040640.01.T01:intron 45.0%
! GAATGGTGGGAGATTGAGAT+TGG + Chr7:80466360-80466379 None:intergenic 45.0%
! TACTCCTTGGTATTGGACAG+TGG - Chr7:80466956-80466975 MsG0780040640.01.T01:intron 45.0%
! TAGGTTTGGTTGGACTTCGT+TGG - Chr7:80470406-80470425 MsG0780040640.01.T01:intron 45.0%
! TGGAGAGAGGTCTTATGATG+TGG - Chr7:80469886-80469905 MsG0780040640.01.T01:intron 45.0%
! TGGGAAAGATCTTGAGTTGC+TGG - Chr7:80469790-80469809 MsG0780040640.01.T01:intron 45.0%
! TGTGGATGACTTGTGGACAA+CGG + Chr7:80467072-80467091 None:intergenic 45.0%
! TTGAGTTGCTGGATTCTCCT+GGG - Chr7:80469801-80469820 MsG0780040640.01.T01:intron 45.0%
!! ATTCGCATTGGAAGTATCCC+AGG + Chr7:80469821-80469840 None:intergenic 45.0%
!! GAAAGTAGTGGGCAAGTTAG+TGG + Chr7:80465531-80465550 None:intergenic 45.0%
!! GTTGAGTGTTGAGCTGTACT+TGG - Chr7:80469095-80469114 MsG0780040640.01.T01:CDS 45.0%
!! TAGCGGATTGCTGATAACAG+CGG - Chr7:80467156-80467175 MsG0780040640.01.T01:CDS 45.0%
!! TCATACGAGGTAATGGGTGA+AGG + Chr7:80465568-80465587 None:intergenic 45.0%
!! TTTTAGTTGTGTGTGGGGGA+GGG + Chr7:80469165-80469184 None:intergenic 45.0%
!!! ATTTTAGTTGTGTGTGGGGG+AGG + Chr7:80469166-80469185 None:intergenic 45.0%
AACCATTCCAAGCTGCCCAT+TGG + Chr7:80467962-80467981 None:intergenic 50.0%
AAGTGGAGAACCTGCTACTG+CGG + Chr7:80466312-80466331 None:intergenic 50.0%
AATGGGCAGCTTGGAATGGT+TGG - Chr7:80467961-80467980 MsG0780040640.01.T01:intron 50.0%
AGAGACAGGTTGCGTCCATT+AGG + Chr7:80469216-80469235 None:intergenic 50.0%
AGCGTCAGAGTCTTGCTTCT+AGG + Chr7:80470462-80470481 None:intergenic 50.0%
AGGAGCTGCAGGAAAGTTGT+AGG + Chr7:80468391-80468410 None:intergenic 50.0%
AGGTTCTCCACTTCACCTCT+CGG - Chr7:80466319-80466338 MsG0780040640.01.T01:CDS 50.0%
ATGTCTTAGCAACGTAGGCG+GGG + Chr7:80465418-80465437 None:intergenic 50.0%
CAAAGGACTACTTCCTCGTC+CGG - Chr7:80468135-80468154 MsG0780040640.01.T01:intron 50.0%
CTCTTTAGGCCTCGTACTTG+GGG - Chr7:80465325-80465344 MsG0780040640.01.T01:three_prime_UTR 50.0%
CTGCGGGTGGGAATAAATTG+TGG + Chr7:80466295-80466314 None:intergenic 50.0%
GATGTCTTAGCAACGTAGGC+GGG + Chr7:80465419-80465438 None:intergenic 50.0%
GCAAGTTAGTGGCACTCATG+AGG + Chr7:80465520-80465539 None:intergenic 50.0%
GCTCAAGCAAGAAACGATGG+TGG - Chr7:80469699-80469718 MsG0780040640.01.T01:intron 50.0%
GGAGATTGAGATTGGAGGGT+TGG + Chr7:80466352-80466371 None:intergenic 50.0%
GGGATCTTGAAAACACGGAG+AGG + Chr7:80468014-80468033 None:intergenic 50.0%
GGTGGGAGATTGAGATTGGA+GGG + Chr7:80466356-80466375 None:intergenic 50.0%
GTACAGGGCACATTGAAGCT+AGG - Chr7:80468064-80468083 MsG0780040640.01.T01:intron 50.0%
GTTGTCCACAAGTCATCCAC+AGG - Chr7:80467071-80467090 MsG0780040640.01.T01:intron 50.0%
TCTCTTGTAACTCCTGGCCT+TGG + Chr7:80468957-80468976 None:intergenic 50.0%
TCTTTAGGCCTCGTACTTGG+GGG - Chr7:80465326-80465345 MsG0780040640.01.T01:three_prime_UTR 50.0%
TGGTGGGAGATTGAGATTGG+AGG + Chr7:80466357-80466376 None:intergenic 50.0%
TTGAAAACACGGAGAGGTGG+AGG + Chr7:80468008-80468027 None:intergenic 50.0%
TTGGTTGGACTTCGTTGGAG+AGG - Chr7:80470411-80470430 MsG0780040640.01.T01:intron 50.0%
TTTAGTTGTGTGTGGGGGAG+GGG + Chr7:80469164-80469183 None:intergenic 50.0%
! ACTTCTTGAGGAAAGGCACG+AGG + Chr7:80470778-80470797 None:intergenic 50.0%
! CTTGAGTTGCTGGATTCTCC+TGG - Chr7:80469800-80469819 MsG0780040640.01.T01:intron 50.0%
! GGTATTGGACAGTGGTTTCC+TGG - Chr7:80466964-80466983 MsG0780040640.01.T01:intron 50.0%
! TTATAGAGGTACGAGACGGG+CGG - Chr7:80467043-80467062 MsG0780040640.01.T01:intron 50.0%
!! AGCGGATTGCTGATAACAGC+GGG - Chr7:80467157-80467176 MsG0780040640.01.T01:CDS 50.0%
!! AGGTAATGGGTGAAGGAGTG+GGG + Chr7:80465561-80465580 None:intergenic 50.0%
!! GACTGGTCACTGATTCGCAT+TGG + Chr7:80469833-80469852 None:intergenic 50.0%
!! GAGGTAATGGGTGAAGGAGT+GGG + Chr7:80465562-80465581 None:intergenic 50.0%
!! TTGAGATTGGAGGGTTGGTG+TGG + Chr7:80466347-80466366 None:intergenic 50.0%
AAGAGGCTTCATGCCTCCCT+CGG - Chr7:80465601-80465620 MsG0780040640.01.T01:three_prime_UTR 55.0%
ACTGGGACCGATCTTTGGAC+TGG - Chr7:80466818-80466837 MsG0780040640.01.T01:intron 55.0%
AGGGCACATTGAAGCTAGGC+CGG - Chr7:80468068-80468087 MsG0780040640.01.T01:intron 55.0%
AGTGGAGAACCTGCTACTGC+GGG + Chr7:80466311-80466330 None:intergenic 55.0%
ATGGTTCCGAAGGAGGGACT+GGG - Chr7:80466801-80466820 MsG0780040640.01.T01:intron 55.0%
CGGACGAGGAAGTAGTCCTT+TGG + Chr7:80468137-80468156 None:intergenic 55.0%
CTCCAATGGGCAGCTTGGAA+TGG - Chr7:80467957-80467976 MsG0780040640.01.T01:intron 55.0%
CTTTAGGCCTCGTACTTGGG+GGG - Chr7:80465327-80465346 MsG0780040640.01.T01:three_prime_UTR 55.0%
GAAGCTAGGCCGGTTAGCAA+AGG - Chr7:80468078-80468097 MsG0780040640.01.T01:intron 55.0%
GTCTTCTCCAATGGGCAGCT+TGG - Chr7:80467952-80467971 MsG0780040640.01.T01:intron 55.0%
TACACAACCCCCCAAGTACG+AGG + Chr7:80465337-80465356 None:intergenic 55.0%
TAGAAGCAACCTACCGGACG+AGG + Chr7:80468151-80468170 None:intergenic 55.0%
TTATTCCCACCCGCAGTAGC+AGG - Chr7:80466299-80466318 MsG0780040640.01.T01:CDS 55.0%
! GGTCACCCCTTCTTCTAGAG+AGG + Chr7:80465397-80465416 None:intergenic 55.0%
!! CGAGGTAATGGGTGAAGGAG+TGG + Chr7:80465563-80465582 None:intergenic 55.0%
!! GGTAATGGGTGAAGGAGTGG+GGG + Chr7:80465560-80465579 None:intergenic 55.0%
ATCGGTCCCAGTCCCTCCTT+CGG + Chr7:80466810-80466829 None:intergenic 60.0%
ATGGGTGAAGGAGTGGGGGT+TGG + Chr7:80465556-80465575 None:intergenic 60.0%
CTTCGTTGGAGAGGCCTCCT+AGG - Chr7:80470420-80470439 MsG0780040640.01.T01:intron 60.0%
GAGAACCTGCTACTGCGGGT+GGG + Chr7:80466307-80466326 None:intergenic 60.0%
GAGGGACTGGGACCGATCTT+TGG - Chr7:80466813-80466832 MsG0780040640.01.T01:intron 60.0%
GATGGTTCCGAAGGAGGGAC+TGG - Chr7:80466800-80466819 MsG0780040640.01.T01:intron 60.0%
GGACTACTTCCTCGTCCGGT+AGG - Chr7:80468139-80468158 MsG0780040640.01.T01:intron 60.0%
! GGGGGTTGGCGGAAAGTAGT+GGG + Chr7:80465542-80465561 None:intergenic 60.0%
! TGGGGGTTGGCGGAAAGTAG+TGG + Chr7:80465543-80465562 None:intergenic 60.0%
! TGTGGCACCGAGAGGTGAAG+TGG + Chr7:80466329-80466348 None:intergenic 60.0%
GAATGTGCCCAGCGGCTCCA+AGG - Chr7:80468937-80468956 MsG0780040640.01.T01:intron 65.0%
GGAGAACCTGCTACTGCGGG+TGG + Chr7:80466308-80466327 None:intergenic 65.0%
GGTGAAGGAGTGGGGGTTGG+CGG + Chr7:80465553-80465572 None:intergenic 65.0%
!! AGGGTTGGTGTGGCACCGAG+AGG + Chr7:80466337-80466356 None:intergenic 65.0%
!! ACTCCTGGCCTTGGAGCCGC+TGG + Chr7:80468948-80468967 None:intergenic 70.0%
!! CTCCTGGCCTTGGAGCCGCT+GGG + Chr7:80468947-80468966 None:intergenic 70.0%
TGCCCAGCGGCTCCAAGGCC+AGG - Chr7:80468942-80468961 MsG0780040640.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 80465305 80470818 80465305 ID=MsG0780040640.01;Name=MsG0780040640.01
Chr7 mRNA 80465305 80470818 80465305 ID=MsG0780040640.01.T01;Parent=MsG0780040640.01;Name=MsG0780040640.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0.87|0.88|0.88|1|1|9|373|380
Chr7 exon 80465305 80465801 80465305 ID=MsG0780040640.01.T01:exon:18541;Parent=MsG0780040640.01.T01
Chr7 exon 80465999 80466056 80465999 ID=MsG0780040640.01.T01:exon:18540;Parent=MsG0780040640.01.T01
Chr7 exon 80466164 80466345 80466164 ID=MsG0780040640.01.T01:exon:18539;Parent=MsG0780040640.01.T01
Chr7 exon 80467141 80467256 80467141 ID=MsG0780040640.01.T01:exon:18538;Parent=MsG0780040640.01.T01
Chr7 exon 80467967 80468053 80467967 ID=MsG0780040640.01.T01:exon:18537;Parent=MsG0780040640.01.T01
Chr7 exon 80468145 80468288 80468145 ID=MsG0780040640.01.T01:exon:18536;Parent=MsG0780040640.01.T01
Chr7 exon 80469031 80469147 80469031 ID=MsG0780040640.01.T01:exon:18535;Parent=MsG0780040640.01.T01
Chr7 exon 80469234 80469344 80469234 ID=MsG0780040640.01.T01:exon:18534;Parent=MsG0780040640.01.T01
Chr7 exon 80470615 80470818 80470615 ID=MsG0780040640.01.T01:exon:18533;Parent=MsG0780040640.01.T01
Chr7 CDS 80470615 80470818 80470615 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80469234 80469344 80469234 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80469031 80469147 80469031 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80468145 80468288 80468145 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80467967 80468053 80467967 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80467141 80467256 80467141 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80466164 80466345 80466164 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80465999 80466056 80465999 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 CDS 80465678 80465801 80465678 ID=MsG0780040640.01.T01:cds;Parent=MsG0780040640.01.T01
Chr7 three_prime_UTR 80465305 80465677 80465305 ID=MsG0780040640.01.T01:three_prime_utr;Parent=MsG0780040640.01.T01
Gene Sequence

>MsG0780040640.01.T01

ATGTTACTCAAGTACTTCATCTCTTTAGGCCTCGTACTTGGGGGGTTGTGTACCGCCATGAGAATTAAGCCAACTAAGGAGCCACATAACCTCTCTAGAAGAAGGGGTGACCCCGCCTACGTTGCTAAGACATCTCATGCTTTGACTAAAGCCTTCCCACTTAAAATACACAGGGCTTTGATTAAGTCTAGTAGAGGTGGAGTAATAATTGGCAACAACACATTTGATGGTTCCGAAGGAGGGACTGGGACCGATCTTTGGACTGGTCTTGACACTGATCTTTATCACTGGACAAAGGTTTTACGACCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAGGAACTCAAGGAACAACTTAAGTTGATGGATGTTGTTATAGAGGTACGAGACGGGCGGATTCCGTTGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGTAATAAGAAGAGAATTTTGGTTTTAAATAGAGAAGATATGATATCAACTGCAGATCGAAATGCTTGGGCAGAGTATTTTACTAGGCATGGAACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGCACATTGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAACGGAGAGCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTGGGAAAATCATCTCTGATCAACCGTTTGTTAAAGAGAAGAATGTGCCCAGCGGCTCCAAGGCCAGGAGTTACAAGAGACTTGAGGTGGGTTCGATTTGGGAAAGATCTTGAGTTGCTGGATTCTCCTGGGATACTTCCAATGCGAATCAGTGACCAGTCAGCAGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCTTATGATGTGGCTGATGTTGCTGCAATTCTTGTTCAGATGCTTACAAAGCTTCCAGCAGTAGGTCGAGATGCCCTTTGTAAACGATACAAGTTTCGTGTAGACAGTGAATGTGGTAAAATATTCATAGAGAAACTTGCGCTTCATTTGTTCAATGGAGATGTTCATCAAGCAGCATACCGTGTCCTGTCAGATTTTAGAAAAGGTAGGTTTGGTTGGACTTCGTTGGAGAGGCCTCCTAGGTGA

Protein sequence

>MsG0780040640.01.T01

MLLKYFISLGLVLGGLCTAMRIKPTKEPHNLSRRRGDPAYVAKTSHALTKAFPLKIHRALIKSSRGGVIIGNNTFDGSEGGTGTDLWTGLDTDLYHWTKVLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNKKRILVLNREDMISTADRNAWAEYFTRHGTKVVFSNGQLGMGTLKLGRLAKELAADVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRDLRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLTKLPAVGRDALCKRYKFRVDSECGKIFIEKLALHLFNGDVHQAAYRVLSDFRKGRFGWTSLERPPR*