AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020027.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020027.01.T01 MTR_8g465870 77.088 419 20 3 1 370 1 392 0.0 605
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020027.01.T01 AT2G32640 52.826 407 116 4 1 355 1 383 4.55e-134 389
MsG0480020027.01.T01 AT2G32640 53.086 405 114 4 1 353 1 381 2.28e-129 384

Find 80 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACAATTCTTCCAATTT+TGG 0.110399 4:+32226604 None:intergenic
TTTCAGGTTCTGAAACTTTC+CGG 0.224553 4:-32228870 MsG0480020027.01.T01:intron
GAGATACTGAGAGTTATTTA+TGG 0.228860 4:-32226166 MsG0480020027.01.T01:CDS
GTAGCTTAGTACCTGGGTTT+TGG 0.242734 4:+32230643 None:intergenic
TCAACCAGGATCGCCAAAAT+TGG 0.275734 4:-32226617 MsG0480020027.01.T01:CDS
CATATCAAGAAAGGAGCTTT+TGG 0.278505 4:-32229884 MsG0480020027.01.T01:CDS
TTGAAAGCAAAGGAGATATC+TGG 0.284111 4:-32229586 MsG0480020027.01.T01:CDS
CAATGGAATATCACAGCTTT+TGG 0.290010 4:-32230735 MsG0480020027.01.T01:CDS
GAAATGGATACCTGATATTC+TGG 0.304541 4:+32226562 None:intergenic
CTTTCTATCCATTCTCAGTA+TGG 0.312285 4:-32225904 MsG0480020027.01.T01:CDS
AAGAATTGTTGGAAGAATAC+TGG 0.333269 4:-32226594 MsG0480020027.01.T01:CDS
GAATCTGATGCCAGAATATC+AGG 0.351292 4:-32226572 MsG0480020027.01.T01:intron
TTCTGCTGCATTTCTTCTGT+GGG 0.354978 4:+32230699 None:intergenic
ACTTGTAGAAGTTGGAATCT+TGG 0.358738 4:-32229860 MsG0480020027.01.T01:CDS
TTCAGGTTCTGAAACTTTCC+GGG 0.368912 4:-32228869 MsG0480020027.01.T01:intron
GCCAAAATTGGAAGAATTGT+TGG 0.372380 4:-32226605 MsG0480020027.01.T01:CDS
TACATTAATCAGACAAGAAA+AGG 0.379688 4:-32230823 None:intergenic
ACAATCTCTATAAGCCTAAC+AGG 0.394378 4:+32229257 None:intergenic
TCTGCCGCTGCAGGCCTGTT+AGG 0.395883 4:-32229271 MsG0480020027.01.T01:intron
AAGCTGTGATATTCCATTGA+TGG 0.403396 4:+32230739 None:intergenic
AGTGGTGAAGTTGGTGGAGC+TGG 0.403875 4:-32230506 MsG0480020027.01.T01:CDS
GATCTTGCTGATAAAATAGA+AGG 0.406678 4:-32230123 MsG0480020027.01.T01:CDS
AACAAATATTTGACCATAGC+TGG 0.421314 4:+32230447 None:intergenic
AATGCAGCAGAAAAGCATTC+AGG 0.432078 4:-32230688 MsG0480020027.01.T01:CDS
CTTCAGCTTCAACCCATCAA+TGG 0.436766 4:-32230752 MsG0480020027.01.T01:CDS
TTGCCACCGCCTTGTGTGCA+AGG 0.448698 4:-32230056 MsG0480020027.01.T01:CDS
CAGGCATTTCCAGCAGGATC+AGG 0.462465 4:-32226682 MsG0480020027.01.T01:CDS
TTTCTGCTGCATTTCTTCTG+TGG 0.462769 4:+32230698 None:intergenic
ATAAGTTACCATACTGAGAA+TGG 0.467568 4:+32225896 None:intergenic
TGCCACCGCCTTGTGTGCAA+GGG 0.470594 4:-32230055 MsG0480020027.01.T01:CDS
TAGAAAGGAATGTGTTGAAA+GGG 0.471250 4:-32230014 MsG0480020027.01.T01:CDS
GTTTCTGTGAGTGGTGAAGT+TGG 0.490111 4:-32230515 MsG0480020027.01.T01:CDS
TCGTCTTATAATTGATGCCA+TGG 0.497926 4:-32228829 MsG0480020027.01.T01:CDS
TGAAAAGATTAGACCAGCTA+TGG 0.501163 4:-32230460 MsG0480020027.01.T01:CDS
ATCACTAGAGAGAACAAGAA+TGG 0.504162 4:-32229909 MsG0480020027.01.T01:intron
TTAGTACCTCTCACGATATG+TGG 0.506371 4:+32226135 None:intergenic
AAATGAGGATCAGCTGCAAA+AGG 0.507019 4:-32229050 MsG0480020027.01.T01:intron
CGTCTTATAATTGATGCCAT+GGG 0.512682 4:-32228828 MsG0480020027.01.T01:CDS
TTAGTGTGTGGAGGAACTCT+TGG 0.516722 4:-32230087 MsG0480020027.01.T01:CDS
TCTTCACAGGCATTTCCAGC+AGG 0.518830 4:-32226688 MsG0480020027.01.T01:intron
TCGAAGACCCCTTGCACACA+AGG 0.521136 4:+32230047 None:intergenic
AGAATGGAACATATCAAGAA+AGG 0.528105 4:-32229893 MsG0480020027.01.T01:CDS
ACCCCTTGCACACAAGGCGG+TGG 0.532698 4:+32230053 None:intergenic
TCAAATATTTGTTCACCTCA+AGG 0.536812 4:-32230437 MsG0480020027.01.T01:CDS
TGAAAGCAAAGGAGATATCT+GGG 0.539774 4:-32229585 MsG0480020027.01.T01:CDS
TCAGATGAGGTAAACAAGCT+TGG 0.546384 4:+32230144 None:intergenic
GTAGAAAGGAATGTGTTGAA+AGG 0.546542 4:-32230015 MsG0480020027.01.T01:CDS
TCAAGAGGACCTGATCCTGC+TGG 0.553182 4:+32226673 None:intergenic
GTCAACGACATTCTTAATCT+CGG 0.562902 4:-32229563 MsG0480020027.01.T01:CDS
TTCGAGTGGCAATTGTAGAA+AGG 0.564432 4:-32230029 MsG0480020027.01.T01:CDS
ACATTAATCAGACAAGAAAA+GGG 0.565601 4:-32230822 None:intergenic
ATGGAGAGTGTTTCTGTGAG+TGG 0.568571 4:-32230524 MsG0480020027.01.T01:CDS
AGCTGTGATATTCCATTGAT+GGG 0.570069 4:+32230740 None:intergenic
AGATGTGGATTTGAAAGCAA+AGG 0.575048 4:-32229596 MsG0480020027.01.T01:CDS
ATCCTCGTATACATTTATGA+AGG 0.576536 4:+32229181 None:intergenic
TCTGTGAGTGGTGAAGTTGG+TGG 0.578179 4:-32230512 MsG0480020027.01.T01:CDS
GCCACCGCCTTGTGTGCAAG+GGG 0.590445 4:-32230054 MsG0480020027.01.T01:CDS
AAGTGAACATATAAGTAGTA+CGG 0.605890 4:+32226650 None:intergenic
TGAACAATGCAGAATAGATG+TGG 0.608301 4:-32229611 MsG0480020027.01.T01:intron
TCATATGATGTGTTAGTGTG+TGG 0.613813 4:-32230099 MsG0480020027.01.T01:CDS
GTGTGCAAGGGGTCTTCGAG+TGG 0.616336 4:-32230043 MsG0480020027.01.T01:CDS
TTTATCAGCAAGATCAGATG+AGG 0.618931 4:+32230131 None:intergenic
TAGTACCTCTCACGATATGT+GGG 0.624088 4:+32226136 None:intergenic
AGAAAGGAATGTGTTGAAAG+GGG 0.624592 4:-32230013 MsG0480020027.01.T01:intron
AAGGATTGCATAAAGTTGCA+TGG 0.626804 4:-32229031 MsG0480020027.01.T01:CDS
CTCCTTCATAAATGTATACG+AGG 0.628193 4:-32229183 MsG0480020027.01.T01:CDS
GGTGAAGTTGGTGGAGCTGG+AGG 0.630599 4:-32230503 MsG0480020027.01.T01:CDS
ATATAAGTAGTACGGTCAAG+AGG 0.635127 4:+32226658 None:intergenic
ACTTATGTAGAACCTCAACC+AGG 0.651187 4:-32226631 MsG0480020027.01.T01:CDS
AGCTGTTCCCTCCAAAACCC+AGG 0.652617 4:-32230654 MsG0480020027.01.T01:intron
AGTATCTCTAGATTGTCAAG+TGG 0.655036 4:+32226181 None:intergenic
ATTGTAGAGACAATTTGTTG+AGG 0.660221 4:+32230168 None:intergenic
AACAGGGGAAAAGTTCCCCA+TGG 0.664926 4:+32228812 None:intergenic
TCTTTCCCACATATCGTGAG+AGG 0.672231 4:-32226141 MsG0480020027.01.T01:intron
TCAGGTTCTGAAACTTTCCG+GGG 0.684505 4:-32228868 MsG0480020027.01.T01:intron
GAATGACACAAACCTCCTTG+AGG 0.688002 4:+32230422 None:intergenic
TATGATGTGTTAGTGTGTGG+AGG 0.689163 4:-32230096 MsG0480020027.01.T01:CDS
AATATTTGTTCACCTCAAGG+AGG 0.692702 4:-32230434 MsG0480020027.01.T01:intron
GTCTTATAATTGATGCCATG+GGG 0.696240 4:-32228827 MsG0480020027.01.T01:CDS
AAGACCCCTTGCACACAAGG+CGG 0.706374 4:+32230050 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAAGTATTAAATTC+AGG - Chr4:32227338-32227357 MsG0480020027.01.T01:intron 10.0%
!! GAATTTAATACTTAAATTAT+TGG + Chr4:32227338-32227357 None:intergenic 10.0%
!!! TATATATTGAATTAGTTTAT+GGG + Chr4:32227158-32227177 None:intergenic 10.0%
!! AAATAATTTCGAAATACAAA+AGG + Chr4:32227019-32227038 None:intergenic 15.0%
!! AAGATAATTATATCTAAATG+AGG - Chr4:32227612-32227631 MsG0480020027.01.T01:intron 15.0%
!! ATAAATATTTGAAGAATGTA+AGG + Chr4:32230354-32230373 None:intergenic 15.0%
!! ATTCTGTAAAATTAAAATTG+AGG + Chr4:32229959-32229978 None:intergenic 15.0%
!! GAGAAAAAAAAAATTACAAT+AGG + Chr4:32227388-32227407 None:intergenic 15.0%
!!! ATTTGCAATTTTTATATGAT+AGG - Chr4:32230468-32230487 MsG0480020027.01.T01:CDS 15.0%
!!! GTATATATTGAATTAGTTTA+TGG + Chr4:32227159-32227178 None:intergenic 15.0%
!!! TTTGCAATTTTTATATGATA+GGG - Chr4:32230469-32230488 MsG0480020027.01.T01:CDS 15.0%
!! AAAGGGAAAGAAAAAAAAAA+CGG - Chr4:32225872-32225891 MsG0480020027.01.T01:CDS 20.0%
!! AACAACAAATTGAAAAGAAA+TGG + Chr4:32230134-32230153 None:intergenic 20.0%
!! TTGGATAGAAATTTGATATA+TGG - Chr4:32228298-32228317 MsG0480020027.01.T01:intron 20.0%
!! TTTCTTTCACATAAATCAAT+TGG + Chr4:32227729-32227748 None:intergenic 20.0%
!!! AACAACAAAATACAATTTTC+TGG + Chr4:32230304-32230323 None:intergenic 20.0%
!!! AATTTGACAAAGTTTTACAT+TGG - Chr4:32228077-32228096 MsG0480020027.01.T01:intron 20.0%
!!! ATTCAAAAGCACAATATTTT+TGG - Chr4:32229896-32229915 MsG0480020027.01.T01:CDS 20.0%
!!! TTCAAAAGCACAATATTTTT+GGG - Chr4:32229897-32229916 MsG0480020027.01.T01:CDS 20.0%
!!! TTCTTTTTAATAGAGGATAA+TGG - Chr4:32226134-32226153 MsG0480020027.01.T01:intron 20.0%
!!! TTGTCTTTTCTTTTTAATAG+AGG - Chr4:32226127-32226146 MsG0480020027.01.T01:intron 20.0%
!!! TTGTTTTTCTTTGTATCTTA+TGG - Chr4:32226100-32226119 MsG0480020027.01.T01:intron 20.0%
! AAAACCACTCAAAAACTAAT+TGG + Chr4:32226736-32226755 None:intergenic 25.0%
! AAAAGACGAGGAAATATAAA+TGG + Chr4:32228014-32228033 None:intergenic 25.0%
! AAACTATTAGAGAAACTACT+CGG - Chr4:32228254-32228273 MsG0480020027.01.T01:intron 25.0%
! AAATAGCATAAATCCTTAAG+AGG + Chr4:32226988-32227007 None:intergenic 25.0%
! AAGGGAAAGAAAAAAAAAAC+GGG - Chr4:32225873-32225892 MsG0480020027.01.T01:CDS 25.0%
! AAGTGAACATATAAGTAGTA+CGG + Chr4:32230030-32230049 None:intergenic 25.0%
! ACCAATTTACCATACATATA+AGG + Chr4:32226449-32226468 None:intergenic 25.0%
! AGATATAGAGATTAATGAGT+TGG - Chr4:32228279-32228298 MsG0480020027.01.T01:intron 25.0%
! ATAGAATATGACACTGAAAA+AGG + Chr4:32229745-32229764 None:intergenic 25.0%
! ATCAATCTTTCATTAAATGC+TGG + Chr4:32229700-32229719 None:intergenic 25.0%
! ATCCAATTGTTTCATTCAAT+AGG - Chr4:32230692-32230711 MsG0480020027.01.T01:CDS 25.0%
! CAATAATTCTAATACTTCAC+AGG + Chr4:32227181-32227200 None:intergenic 25.0%
! CTATTCATCAATCTTTAGTA+GGG + Chr4:32229646-32229665 None:intergenic 25.0%
! CTATTGTGAATTATCGTAAT+TGG - Chr4:32227589-32227608 MsG0480020027.01.T01:intron 25.0%
! TAGAATATGACACTGAAAAA+GGG + Chr4:32229744-32229763 None:intergenic 25.0%
! TATTCATCAATCTTTAGTAG+GGG + Chr4:32229645-32229664 None:intergenic 25.0%
! TGAATTCATTTGTAAGCATA+TGG + Chr4:32230579-32230598 None:intergenic 25.0%
! TGATATATGGTAGAACATTA+TGG - Chr4:32228311-32228330 MsG0480020027.01.T01:intron 25.0%
! TTCCTATTGAATGAAACAAT+TGG + Chr4:32230697-32230716 None:intergenic 25.0%
!! AAGTTCTTGTTTCTCTTTAT+TGG - Chr4:32230663-32230682 MsG0480020027.01.T01:CDS 25.0%
!! AATGTAAGGTACTAACTTTA+TGG + Chr4:32230340-32230359 None:intergenic 25.0%
!! AATTTTACTGAAATCTTCAC+AGG - Chr4:32229976-32229995 MsG0480020027.01.T01:intron 25.0%
!! AGTTTCTCTAATAGTTTTCT+AGG + Chr4:32228251-32228270 None:intergenic 25.0%
!! TATTGAATTAGTTTATGGGA+AGG + Chr4:32227154-32227173 None:intergenic 25.0%
!!! CTTTGTTTTTTCTGTTATTC+TGG + Chr4:32228570-32228589 None:intergenic 25.0%
AAACCTATTCCTATATTGCA+TGG + Chr4:32227991-32228010 None:intergenic 30.0%
AAATAAGCCAAAAACCCTTT+CGG - Chr4:32228916-32228935 MsG0480020027.01.T01:intron 30.0%
AACAAATATTTGACCATAGC+TGG + Chr4:32226233-32226252 None:intergenic 30.0%
AAGAATTGTTGGAAGAATAC+TGG - Chr4:32230083-32230102 MsG0480020027.01.T01:CDS 30.0%
AATCTTTAGTAGGGGAAAAT+TGG + Chr4:32229637-32229656 None:intergenic 30.0%
AGAATGGAACATATCAAGAA+AGG - Chr4:32226784-32226803 MsG0480020027.01.T01:intron 30.0%
AGGAAATTAAAATTCTCTCC+TGG + Chr4:32228812-32228831 None:intergenic 30.0%
AGGGAAAGAAAAAAAAAACG+GGG - Chr4:32225874-32225893 MsG0480020027.01.T01:CDS 30.0%
ATAAGTTACCATACTGAGAA+TGG + Chr4:32230784-32230803 None:intergenic 30.0%
ATCAATGCAGTATAGAAAAC+TGG + Chr4:32230269-32230288 None:intergenic 30.0%
ATCCTCGTATACATTTATGA+AGG + Chr4:32227499-32227518 None:intergenic 30.0%
ATCCTTAAGAGGTAAGAAAA+TGG + Chr4:32226977-32226996 None:intergenic 30.0%
CACATATTAGTATGTTGAAG+AGG + Chr4:32226062-32226081 None:intergenic 30.0%
CCTACTAAAGATTGATGAAT+AGG - Chr4:32229644-32229663 MsG0480020027.01.T01:intron 30.0%
CCTATTCATCAATCTTTAGT+AGG + Chr4:32229647-32229666 None:intergenic 30.0%
CTCATAAAGAAAAAAAGACG+AGG + Chr4:32228026-32228045 None:intergenic 30.0%
GAATGAAACAATTGGATCAT+GGG + Chr4:32230689-32230708 None:intergenic 30.0%
GAGATACTGAGAGTTATTTA+TGG - Chr4:32230511-32230530 MsG0480020027.01.T01:CDS 30.0%
GATCTTGCTGATAAAATAGA+AGG - Chr4:32226554-32226573 MsG0480020027.01.T01:intron 30.0%
GCCTTATATGTATGGTAAAT+TGG - Chr4:32226445-32226464 MsG0480020027.01.T01:intron 30.0%
TACATCTGTTCATTCATTGT+AGG + Chr4:32229058-32229077 None:intergenic 30.0%
TAGAAAGGAATGTGTTGAAA+GGG - Chr4:32226663-32226682 MsG0480020027.01.T01:CDS 30.0%
TAGATCAGCTTACAAAATTG+TGG + Chr4:32229297-32229316 None:intergenic 30.0%
TATTCCAACCAAACAGAATT+TGG + Chr4:32229153-32229172 None:intergenic 30.0%
TCAAATATTTGTTCACCTCA+AGG - Chr4:32226240-32226259 MsG0480020027.01.T01:intron 30.0%
TCATCATGTTATAGTTGCAT+GGG - Chr4:32227946-32227965 MsG0480020027.01.T01:intron 30.0%
TGAACATATAAGTAGCGTAA+TGG + Chr4:32230206-32230225 None:intergenic 30.0%
TGAATGAAACAATTGGATCA+TGG + Chr4:32230690-32230709 None:intergenic 30.0%
TGATGGGAAAATAAATTGTG+AGG - Chr4:32228975-32228994 MsG0480020027.01.T01:intron 30.0%
TGCATTAGTTCAGTTATTAC+AGG + Chr4:32226884-32226903 None:intergenic 30.0%
TTAAAATTCTCTCCTGGAAT+TGG + Chr4:32228806-32228825 None:intergenic 30.0%
TTCATCATGTTATAGTTGCA+TGG - Chr4:32227945-32227964 MsG0480020027.01.T01:intron 30.0%
! AAGGTACTAACTTTATGGAT+TGG + Chr4:32230335-32230354 None:intergenic 30.0%
! ACACCTTCAATTTGAAATGT+CGG - Chr4:32226405-32226424 MsG0480020027.01.T01:intron 30.0%
! AGAATATTTGAAGCGTGTTT+AGG + Chr4:32226940-32226959 None:intergenic 30.0%
! ATGATTTTACAGATAAGACG+TGG - Chr4:32229763-32229782 MsG0480020027.01.T01:intron 30.0%
! GTATGATTTGTGACATTGAA+TGG + Chr4:32230617-32230636 None:intergenic 30.0%
! TCCAACAATTCTTCCAATTT+TGG + Chr4:32230076-32230095 None:intergenic 30.0%
! TGATTTTACAGATAAGACGT+GGG - Chr4:32229764-32229783 MsG0480020027.01.T01:intron 30.0%
! TTGACTACATGGATTAAATG+AGG + Chr4:32228337-32228356 None:intergenic 30.0%
!! ATTACTAGTTCTACAGGTTA+AGG + Chr4:32227537-32227556 None:intergenic 30.0%
!! ATTGTAGAGACAATTTGTTG+AGG + Chr4:32226512-32226531 None:intergenic 30.0%
!! GTTTTTCAACAATGTTGTGA+AGG + Chr4:32228853-32228872 None:intergenic 30.0%
!! TCACTTATTACTAGTTCTAC+AGG + Chr4:32227543-32227562 None:intergenic 30.0%
!! TCATTTTTGAATGTCTGTCT+GGG - Chr4:32227264-32227283 MsG0480020027.01.T01:intron 30.0%
!! TTCATTTTTGAATGTCTGTC+TGG - Chr4:32227263-32227282 MsG0480020027.01.T01:intron 30.0%
!! TTTGAGTTGAAAGAGAGAAA+AGG - Chr4:32229510-32229529 MsG0480020027.01.T01:intron 30.0%
!!! AAAAGCACAATATTTTTGGG+AGG - Chr4:32229900-32229919 MsG0480020027.01.T01:CDS 30.0%
!!! GAAATTCTAGTTTGGTTTTG+AGG + Chr4:32230157-32230176 None:intergenic 30.0%
!!! TTTTTTCTGTTATTCTGGTG+CGG + Chr4:32228565-32228584 None:intergenic 30.0%
AAGAAAATGGCATGAAGCTA+TGG + Chr4:32226964-32226983 None:intergenic 35.0%
AAGCTGATCTAACAGTAAAC+CGG - Chr4:32229306-32229325 MsG0480020027.01.T01:intron 35.0%
AAGCTGTGATATTCCATTGA+TGG + Chr4:32225941-32225960 None:intergenic 35.0%
AAGGATTGCATAAAGTTGCA+TGG - Chr4:32227646-32227665 MsG0480020027.01.T01:intron 35.0%
AATATTTGTTCACCTCAAGG+AGG - Chr4:32226243-32226262 MsG0480020027.01.T01:intron 35.0%
AATGTGTTGGGACTATTAGA+AGG + Chr4:32229484-32229503 None:intergenic 35.0%
ACAATCTCTATAAGCCTAAC+AGG + Chr4:32227423-32227442 None:intergenic 35.0%
ACACCGACATTTCAAATTGA+AGG + Chr4:32226411-32226430 None:intergenic 35.0%
ACTCAAAAAGAGGAATGTGT+TGG + Chr4:32229497-32229516 None:intergenic 35.0%
ACTTGTAGAAGTTGGAATCT+TGG - Chr4:32226817-32226836 MsG0480020027.01.T01:intron 35.0%
AGAAAGGAATGTGTTGAAAG+GGG - Chr4:32226664-32226683 MsG0480020027.01.T01:CDS 35.0%
AGATGTGGATTTGAAAGCAA+AGG - Chr4:32227081-32227100 MsG0480020027.01.T01:intron 35.0%
AGCTGTGATATTCCATTGAT+GGG + Chr4:32225940-32225959 None:intergenic 35.0%
AGTATCTCTAGATTGTCAAG+TGG + Chr4:32230499-32230518 None:intergenic 35.0%
AGTCAAATCACTAGATGTAG+AGG - Chr4:32228221-32228240 MsG0480020027.01.T01:intron 35.0%
ATATAAGTAGTACGGTCAAG+AGG + Chr4:32230022-32230041 None:intergenic 35.0%
ATCACTAGAGAGAACAAGAA+TGG - Chr4:32226768-32226787 MsG0480020027.01.T01:intron 35.0%
ATCAGCTTACAAAATTGTGG+AGG + Chr4:32229294-32229313 None:intergenic 35.0%
ATGCAACATCGCATATGATT+TGG - Chr4:32228405-32228424 MsG0480020027.01.T01:intron 35.0%
ATGCCATGCAATATAGGAAT+AGG - Chr4:32227985-32228004 MsG0480020027.01.T01:intron 35.0%
ATGTGTTGGGACTATTAGAA+GGG + Chr4:32229483-32229502 None:intergenic 35.0%
CGTCTTATAATTGATGCCAT+GGG - Chr4:32227849-32227868 MsG0480020027.01.T01:intron 35.0%
CTCAAAAAGAGGAATGTGTT+GGG + Chr4:32229496-32229515 None:intergenic 35.0%
CTCCTTCATAAATGTATACG+AGG - Chr4:32227494-32227513 MsG0480020027.01.T01:intron 35.0%
CTCTCTTTCAACTCAAAAAG+AGG + Chr4:32229507-32229526 None:intergenic 35.0%
CTTTCTATCCATTCTCAGTA+TGG - Chr4:32230773-32230792 MsG0480020027.01.T01:exon 35.0%
GAAATGGATACCTGATATTC+TGG + Chr4:32230118-32230137 None:intergenic 35.0%
GCCAAAATTGGAAGAATTGT+TGG - Chr4:32230072-32230091 MsG0480020027.01.T01:CDS 35.0%
GCGAAGGGAATTATTTGTAT+AGG + Chr4:32229426-32229445 None:intergenic 35.0%
GGAGAATTAAAGAACACATC+AGG + Chr4:32230411-32230430 None:intergenic 35.0%
GTAGAAAGGAATGTGTTGAA+AGG - Chr4:32226662-32226681 MsG0480020027.01.T01:CDS 35.0%
GTCAACGACATTCTTAATCT+CGG - Chr4:32227114-32227133 MsG0480020027.01.T01:intron 35.0%
GTCTTATAATTGATGCCATG+GGG - Chr4:32227850-32227869 MsG0480020027.01.T01:intron 35.0%
GTTGTTCGTAAGATTGGAAA+CGG + Chr4:32229602-32229621 None:intergenic 35.0%
TCATATGATGTGTTAGTGTG+TGG - Chr4:32226578-32226597 MsG0480020027.01.T01:CDS 35.0%
TCGTCTTATAATTGATGCCA+TGG - Chr4:32227848-32227867 MsG0480020027.01.T01:intron 35.0%
TCTGTTCATTCATTGTAGGA+TGG + Chr4:32229054-32229073 None:intergenic 35.0%
TCTTCTTGCCAAATTCTGTT+TGG - Chr4:32229142-32229161 MsG0480020027.01.T01:intron 35.0%
TGAAAAGATTAGACCAGCTA+TGG - Chr4:32226217-32226236 MsG0480020027.01.T01:intron 35.0%
TGAAAGCAAAGGAGATATCT+GGG - Chr4:32227092-32227111 MsG0480020027.01.T01:intron 35.0%
TGAACAATGCAGAATAGATG+TGG - Chr4:32227066-32227085 MsG0480020027.01.T01:intron 35.0%
TGTTTCATGCCATGCAATAT+AGG - Chr4:32227979-32227998 MsG0480020027.01.T01:intron 35.0%
TTGAAAGAGAGAAAAGGAGA+GGG - Chr4:32229516-32229535 MsG0480020027.01.T01:intron 35.0%
TTGAAAGCAAAGGAGATATC+TGG - Chr4:32227091-32227110 MsG0480020027.01.T01:intron 35.0%
TTGAATGTAACCATATGTGC+TGG - Chr4:32226367-32226386 MsG0480020027.01.T01:intron 35.0%
TTGTTCGTAAGATTGGAAAC+GGG + Chr4:32229601-32229620 None:intergenic 35.0%
TTTATCAGCAAGATCAGATG+AGG + Chr4:32226549-32226568 None:intergenic 35.0%
TTTCAACAATGTTGTGAAGG+AGG + Chr4:32228850-32228869 None:intergenic 35.0%
! AAGAAACGTTTTATCTCCCT+CGG - Chr4:32227444-32227463 MsG0480020027.01.T01:intron 35.0%
! AGGGGAAAATTGGTTCAAAA+GGG + Chr4:32229627-32229646 None:intergenic 35.0%
! AGTGTGTGGACAAAGATTTT+GGG + Chr4:32229026-32229045 None:intergenic 35.0%
! ATAGAAAACTGGTAGCGTAA+TGG + Chr4:32230258-32230277 None:intergenic 35.0%
! ATGAGACAGCCTTATATGTA+TGG - Chr4:32226437-32226456 MsG0480020027.01.T01:intron 35.0%
! CAATGGAATATCACAGCTTT+TGG - Chr4:32225942-32225961 MsG0480020027.01.T01:intron 35.0%
! CAATTTGAAATGTCGGTGTT+AGG - Chr4:32226412-32226431 MsG0480020027.01.T01:intron 35.0%
! CATATCAAGAAAGGAGCTTT+TGG - Chr4:32226793-32226812 MsG0480020027.01.T01:intron 35.0%
! CTGTGGTTGAAATTCTAGTT+TGG + Chr4:32230165-32230184 None:intergenic 35.0%
! TAGGGGAAAATTGGTTCAAA+AGG + Chr4:32229628-32229647 None:intergenic 35.0%
! TAGTGTGTGGACAAAGATTT+TGG + Chr4:32229027-32229046 None:intergenic 35.0%
! TTTCAAATTGAAGGTGTGTC+TGG + Chr4:32226402-32226421 None:intergenic 35.0%
!! CATTGATTTGACAGCTTCTA+AGG + Chr4:32229117-32229136 None:intergenic 35.0%
!! GCATGCGTTATTTCATTTTC+AGG - Chr4:32227791-32227810 MsG0480020027.01.T01:intron 35.0%
!! TTTCAGGTTCTGAAACTTTC+CGG - Chr4:32227807-32227826 MsG0480020027.01.T01:intron 35.0%
!!! CGATCCAATTAGTTTTTGAG+TGG - Chr4:32226729-32226748 MsG0480020027.01.T01:intron 35.0%
!!! CTTTTGGAACTTGTAGAAGT+TGG - Chr4:32226809-32226828 MsG0480020027.01.T01:intron 35.0%
!!! GAAAGGGTTTTTGGCTTATT+TGG + Chr4:32228917-32228936 None:intergenic 35.0%
!!! TGCCATTTTCTTACCTCTTA+AGG - Chr4:32226972-32226991 MsG0480020027.01.T01:intron 35.0%
AAATGAGGATCAGCTGCAAA+AGG - Chr4:32227627-32227646 MsG0480020027.01.T01:intron 40.0%
ACTTATGTAGAACCTCAACC+AGG - Chr4:32230046-32230065 MsG0480020027.01.T01:CDS 40.0%
AGCTCAACAGTAAAGAGAGT+TGG - Chr4:32229871-32229890 MsG0480020027.01.T01:CDS 40.0%
AGGGAAGTTGTTCGTAAGAT+TGG + Chr4:32229608-32229627 None:intergenic 40.0%
ATGCATAGCAAGGCTAACAT+AGG - Chr4:32228152-32228171 MsG0480020027.01.T01:intron 40.0%
CACTGAAAAAGGGTTGAGAA+AGG + Chr4:32229734-32229753 None:intergenic 40.0%
CTTGCCAAATTCTGTTTGGT+TGG - Chr4:32229146-32229165 MsG0480020027.01.T01:intron 40.0%
GAATCTGATGCCAGAATATC+AGG - Chr4:32230105-32230124 MsG0480020027.01.T01:CDS 40.0%
GCAAGATCTGAATCTTCAAC+AGG + Chr4:32227366-32227385 None:intergenic 40.0%
GTTGAAAGAGAGAAAAGGAG+AGG - Chr4:32229515-32229534 MsG0480020027.01.T01:intron 40.0%
TAGTACCTCTCACGATATGT+GGG + Chr4:32230544-32230563 None:intergenic 40.0%
TATGATGTGTTAGTGTGTGG+AGG - Chr4:32226581-32226600 MsG0480020027.01.T01:CDS 40.0%
TATTTGGCACGCGACTATTT+GGG + Chr4:32228901-32228920 None:intergenic 40.0%
TCAAAAGGTAGGGGGTTTAT+TGG + Chr4:32228716-32228735 None:intergenic 40.0%
TCAGATGAGGTAAACAAGCT+TGG + Chr4:32226536-32226555 None:intergenic 40.0%
TGTTCGTAAGATTGGAAACG+GGG + Chr4:32229600-32229619 None:intergenic 40.0%
TTAGTACCTCTCACGATATG+TGG + Chr4:32230545-32230564 None:intergenic 40.0%
TTATTTGGCACGCGACTATT+TGG + Chr4:32228902-32228921 None:intergenic 40.0%
TTCGAGTGGCAATTGTAGAA+AGG - Chr4:32226648-32226667 MsG0480020027.01.T01:CDS 40.0%
TTCTGCTGCATTTCTTCTGT+GGG + Chr4:32225981-32226000 None:intergenic 40.0%
TTGCAGCTGTTAGGCTTATT+AGG + Chr4:32228595-32228614 None:intergenic 40.0%
TTTCTGCTGCATTTCTTCTG+TGG + Chr4:32225982-32226001 None:intergenic 40.0%
TTTGTTCTACGAGTGGTGTT+GGG + Chr4:32228754-32228773 None:intergenic 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + Chr4:32228360-32228379 None:intergenic 40.0%
! AGAAGTTCCGAAAGGGTTTT+TGG + Chr4:32228926-32228945 None:intergenic 40.0%
! AGAGTGTTTCAAAAGGTAGG+GGG + Chr4:32228724-32228743 None:intergenic 40.0%
! AGATGACAAGATTTTGTCCC+CGG + Chr4:32227829-32227848 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + Chr4:32228361-32228380 None:intergenic 40.0%
! CTATGCCAAACATCTAGAGT+TGG - Chr4:32230385-32230404 MsG0480020027.01.T01:intron 40.0%
! CTCTCCTTTTATCCGGAATT+GGG - Chr4:32228122-32228141 MsG0480020027.01.T01:intron 40.0%
! CTTTTCCCCTGTTGTAAAAC+AGG - Chr4:32227875-32227894 MsG0480020027.01.T01:intron 40.0%
! GGCTAATTCTCTCTTTTGGT+TGG + Chr4:32229579-32229598 None:intergenic 40.0%
! GTTTTCTGTTTGCAGCTGTT+AGG + Chr4:32228604-32228623 None:intergenic 40.0%
! TTTTACAGATAAGACGTGGG+AGG - Chr4:32229767-32229786 MsG0480020027.01.T01:intron 40.0%
!! AAAAGGTGTTCGGGCTTATT+TGG + Chr4:32229232-32229251 None:intergenic 40.0%
!! AATGCAGCAGAAAAGCATTC+AGG - Chr4:32225989-32226008 MsG0480020027.01.T01:intron 40.0%
!! GAGAGTGTTTCAAAAGGTAG+GGG + Chr4:32228725-32228744 None:intergenic 40.0%
!! GGAGAGTGTTTCAAAAGGTA+GGG + Chr4:32228726-32228745 None:intergenic 40.0%
!! GTCGAATAGGAAAAGGTGTT+CGG + Chr4:32229242-32229261 None:intergenic 40.0%
!! TAAAAGGAGAGCGTTGTGTT+TGG + Chr4:32228113-32228132 None:intergenic 40.0%
!! TCGAATAGGAAAAGGTGTTC+GGG + Chr4:32229241-32229260 None:intergenic 40.0%
!! TCTTACGTGGAAAGCACTTT+GGG + Chr4:32229180-32229199 None:intergenic 40.0%
!! TGTGGACAAAGATTTTGGGA+TGG + Chr4:32229022-32229041 None:intergenic 40.0%
!! TTCAGGTTCTGAAACTTTCC+GGG - Chr4:32227808-32227827 MsG0480020027.01.T01:intron 40.0%
!!! ACAAAGATTTTGGGATGGTG+TGG + Chr4:32229017-32229036 None:intergenic 40.0%
!!! CAAAGATTTTGGGATGGTGT+GGG + Chr4:32229016-32229035 None:intergenic 40.0%
!!! TACCTTTTGAAACACTCTCC+CGG - Chr4:32228726-32228745 MsG0480020027.01.T01:intron 40.0%
AACACGGGAATGAGTTCAGA+CGG - Chr4:32228772-32228791 MsG0480020027.01.T01:intron 45.0%
AAGGACTGTTTGTGGTGTGA+AGG + Chr4:32229098-32229117 None:intergenic 45.0%
ACAAAAGAAGAACAGCAGCC+AGG - Chr4:32228527-32228546 MsG0480020027.01.T01:intron 45.0%
ACAACAAGGCAAACACCATC+AGG + Chr4:32229796-32229815 None:intergenic 45.0%
ACCACTCGTAGAACAAACAC+GGG - Chr4:32228757-32228776 MsG0480020027.01.T01:intron 45.0%
ACTAAGTGGGGTTGACTACA+TGG + Chr4:32228348-32228367 None:intergenic 45.0%
AGAGAAGACAGTAGATCACG+TGG - Chr4:32228193-32228212 MsG0480020027.01.T01:intron 45.0%
AGAGGTAGTAGCTTAGTACC+TGG + Chr4:32226044-32226063 None:intergenic 45.0%
AGATGCAACATCAACAGCTG+TGG + Chr4:32230182-32230201 None:intergenic 45.0%
AGCTGCAAACAGAAAACAGC+AGG - Chr4:32228607-32228626 MsG0480020027.01.T01:intron 45.0%
AGGGGTAAGAAGTTCCGAAA+GGG + Chr4:32228933-32228952 None:intergenic 45.0%
ATAGCAAGGCTAACATAGGC+AGG - Chr4:32228156-32228175 MsG0480020027.01.T01:intron 45.0%
ATGTAGTCAACCCCACTTAG+TGG - Chr4:32228347-32228366 MsG0480020027.01.T01:intron 45.0%
CAACAATGTTGTGAAGGAGG+TGG + Chr4:32228847-32228866 None:intergenic 45.0%
CACCACTCGTAGAACAAACA+CGG - Chr4:32228756-32228775 MsG0480020027.01.T01:intron 45.0%
CAGTCCCAATTCCGGATAAA+AGG + Chr4:32228129-32228148 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG - Chr4:32228359-32228378 MsG0480020027.01.T01:intron 45.0%
CCCTGTTGTAAAACAGGTCA+GGG - Chr4:32227881-32227900 MsG0480020027.01.T01:intron 45.0%
CTCAAAAAAGACTCCACCGA+GGG + Chr4:32227463-32227482 None:intergenic 45.0%
CTTCAGCTTCAACCCATCAA+TGG - Chr4:32225925-32225944 MsG0480020027.01.T01:intron 45.0%
GAATGACACAAACCTCCTTG+AGG + Chr4:32226258-32226277 None:intergenic 45.0%
GAGGTAGTAGCTTAGTACCT+GGG + Chr4:32226043-32226062 None:intergenic 45.0%
GCTGCAAACAGAAAACAGCA+GGG - Chr4:32228608-32228627 MsG0480020027.01.T01:intron 45.0%
GTAAGAGCTACCACCTTAGA+AGG - Chr4:32229194-32229213 MsG0480020027.01.T01:CDS 45.0%
GTTTCTGTGAGTGGTGAAGT+TGG - Chr4:32226162-32226181 MsG0480020027.01.T01:CDS 45.0%
GTTTGTTCTACGAGTGGTGT+TGG + Chr4:32228755-32228774 None:intergenic 45.0%
TAGCAAGGCTAACATAGGCA+GGG - Chr4:32228157-32228176 MsG0480020027.01.T01:intron 45.0%
TCAACCAGGATCGCCAAAAT+TGG - Chr4:32230060-32230079 MsG0480020027.01.T01:CDS 45.0%
TCAGGCCAACTCTAGATGTT+TGG + Chr4:32230393-32230412 None:intergenic 45.0%
TCTTTCCCACATATCGTGAG+AGG - Chr4:32230536-32230555 MsG0480020027.01.T01:intron 45.0%
TGCATAGTCAGTCCCAATTC+CGG + Chr4:32228137-32228156 None:intergenic 45.0%
TGTAGTCAACCCCACTTAGT+GGG - Chr4:32228348-32228367 MsG0480020027.01.T01:intron 45.0%
TGTTGGGACTATTAGAAGGG+CGG + Chr4:32229480-32229499 None:intergenic 45.0%
TTAGTGTGTGGAGGAACTCT+TGG - Chr4:32226590-32226609 MsG0480020027.01.T01:CDS 45.0%
TTTGTAGTTCCTTGCCCAGT+TGG + Chr4:32228512-32228531 None:intergenic 45.0%
! AAACGTTTTATCTCCCTCGG+TGG - Chr4:32227447-32227466 MsG0480020027.01.T01:intron 45.0%
! ACGGGGCTAATTCTCTCTTT+TGG + Chr4:32229583-32229602 None:intergenic 45.0%
! CACAACGCTCTCCTTTTATC+CGG - Chr4:32228115-32228134 MsG0480020027.01.T01:intron 45.0%
! CAGCTTCTAAGGACTGTTTG+TGG + Chr4:32229106-32229125 None:intergenic 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + Chr4:32228362-32228381 None:intergenic 45.0%
! CCCTGACCTGTTTTACAACA+GGG + Chr4:32227884-32227903 None:intergenic 45.0%
! CCTGACCTGTTTTACAACAG+GGG + Chr4:32227883-32227902 None:intergenic 45.0%
! GATGGTGTTTGCCTTGTTGT+TGG - Chr4:32229796-32229815 MsG0480020027.01.T01:intron 45.0%
! GCTCTCCTTTTATCCGGAAT+TGG - Chr4:32228121-32228140 MsG0480020027.01.T01:intron 45.0%
! GTAACCATATGTGCTGGCAT+CGG - Chr4:32226373-32226392 MsG0480020027.01.T01:intron 45.0%
! GTAGCTTAGTACCTGGGTTT+TGG + Chr4:32226037-32226056 None:intergenic 45.0%
! GTGGTGTGTCCTTTAGAGAT+CGG + Chr4:32229544-32229563 None:intergenic 45.0%
! TCCCTGACCTGTTTTACAAC+AGG + Chr4:32227885-32227904 None:intergenic 45.0%
! TGACAGCTGCGTGAGTTTTT+GGG + Chr4:32228691-32228710 None:intergenic 45.0%
! TTGACAGCTGCGTGAGTTTT+TGG + Chr4:32228692-32228711 None:intergenic 45.0%
!! AATTTTGGCGATCCTGGTTG+AGG + Chr4:32230061-32230080 None:intergenic 45.0%
!! ATGGAGAGTGTTTCTGTGAG+TGG - Chr4:32226153-32226172 MsG0480020027.01.T01:CDS 45.0%
!! CTCTTACGTGGAAAGCACTT+TGG + Chr4:32229181-32229200 None:intergenic 45.0%
!! GGGAGAGTGTTTCAAAAGGT+AGG + Chr4:32228727-32228746 None:intergenic 45.0%
!! TCAGGTTCTGAAACTTTCCG+GGG - Chr4:32227809-32227828 MsG0480020027.01.T01:intron 45.0%
!! TCTTCCAATTTTGGCGATCC+TGG + Chr4:32230067-32230086 None:intergenic 45.0%
!!! ACCTTTTGAAACACTCTCCC+GGG - Chr4:32228727-32228746 MsG0480020027.01.T01:intron 45.0%
!!! CTCGGTGGAGTCTTTTTTGA+GGG - Chr4:32227462-32227481 MsG0480020027.01.T01:intron 45.0%
!!! CTTAGTACCTGGGTTTTGGA+GGG + Chr4:32226033-32226052 None:intergenic 45.0%
!!! TTTTTTTTCTCTGCCGCTGC+AGG - Chr4:32227397-32227416 MsG0480020027.01.T01:intron 45.0%
!! AATTTAATACTTAAATTATT+GGG + Chr4:32227337-32227356 None:intergenic 5.0%
AACAGGGGAAAAGTTCCCCA+TGG + Chr4:32227868-32227887 None:intergenic 50.0%
ACTATTAGAAGGGCGGCTGA+AGG + Chr4:32229473-32229492 None:intergenic 50.0%
AGAGCAGCAGAACTGAACAC+GGG + Chr4:32230432-32230451 None:intergenic 50.0%
AGGCTAACATAGGCAGGGTT+TGG - Chr4:32228162-32228181 MsG0480020027.01.T01:intron 50.0%
AGGTGTTCGGGCTTATTTGG+CGG + Chr4:32229229-32229248 None:intergenic 50.0%
ATCAGTGTGGTGTCTGGTGT+CGG + Chr4:32226323-32226342 None:intergenic 50.0%
CCCCTGTTGTAAAACAGGTC+AGG - Chr4:32227880-32227899 MsG0480020027.01.T01:intron 50.0%
CCTCAAAAAAGACTCCACCG+AGG + Chr4:32227464-32227483 None:intergenic 50.0%
CCTTCAAGTGGGGAATAGGT+GGG + Chr4:32229267-32229286 None:intergenic 50.0%
CGATCCTTCAAGTGGGGAAT+AGG + Chr4:32229271-32229290 None:intergenic 50.0%
CGCAAAACAGCACTGCTGAT+GGG - Chr4:32228959-32228978 MsG0480020027.01.T01:intron 50.0%
CTAAGGTGGTAGCTCTTACG+TGG + Chr4:32229193-32229212 None:intergenic 50.0%
CTTCAAGTGGGGAATAGGTG+GGG + Chr4:32229266-32229285 None:intergenic 50.0%
GAAGGAGGTGGATGATGTAG+TGG + Chr4:32228835-32228854 None:intergenic 50.0%
GAGAGCAGCAGAACTGAACA+CGG + Chr4:32230433-32230452 None:intergenic 50.0%
GAGAGGGAACCGATCTCTAA+AGG - Chr4:32229532-32229551 MsG0480020027.01.T01:intron 50.0%
GAGGGGTAAGAAGTTCCGAA+AGG + Chr4:32228934-32228953 None:intergenic 50.0%
GATCAGCTAACAGCTGCGAT+TGG + Chr4:32229389-32229408 None:intergenic 50.0%
GATTGGTGCGGTTGAACTGT+CGG + Chr4:32229372-32229391 None:intergenic 50.0%
GGCTAACATAGGCAGGGTTT+GGG - Chr4:32228163-32228182 MsG0480020027.01.T01:intron 50.0%
GGGACTGACTATGCATAGCA+AGG - Chr4:32228142-32228161 MsG0480020027.01.T01:intron 50.0%
GTGAGTATCAGTGTGGTGTC+TGG + Chr4:32226329-32226348 None:intergenic 50.0%
TCCCGTGTTTGTTCTACGAG+TGG + Chr4:32228761-32228780 None:intergenic 50.0%
TCCTTCAAGTGGGGAATAGG+TGG + Chr4:32229268-32229287 None:intergenic 50.0%
TCGACGTGTGAGTATCAGTG+TGG + Chr4:32226336-32226355 None:intergenic 50.0%
TCTGTGAGTGGTGAAGTTGG+TGG - Chr4:32226165-32226184 MsG0480020027.01.T01:CDS 50.0%
TCTTCACAGGCATTTCCAGC+AGG - Chr4:32229989-32230008 MsG0480020027.01.T01:intron 50.0%
TGTCTGTCTGGGCTTACTCT+CGG - Chr4:32227275-32227294 MsG0480020027.01.T01:intron 50.0%
TTCAAGTGGGGAATAGGTGG+GGG + Chr4:32229265-32229284 None:intergenic 50.0%
TTCTGCTGCTCTCTGCTTGA+TGG - Chr4:32230440-32230459 MsG0480020027.01.T01:CDS 50.0%
! ACGCGACTATTTGGGTGTTG+TGG + Chr4:32228893-32228912 None:intergenic 50.0%
! GTAGGATGGCTTGTAGTGTG+TGG + Chr4:32229040-32229059 None:intergenic 50.0%
!! ACCCGGGAGAGTGTTTCAAA+AGG + Chr4:32228731-32228750 None:intergenic 50.0%
!! CCACACAAGAAGTGCCAACT+GGG - Chr4:32228495-32228514 MsG0480020027.01.T01:intron 50.0%
!! GCTTAGTACCTGGGTTTTGG+AGG + Chr4:32226034-32226053 None:intergenic 50.0%
!!! AGTGCTGTTTTGCGGAGTTG+AGG + Chr4:32228953-32228972 None:intergenic 50.0%
!!! CCATCAGCAGTGCTGTTTTG+CGG + Chr4:32228961-32228980 None:intergenic 50.0%
!!! CCTCGGTGGAGTCTTTTTTG+AGG - Chr4:32227461-32227480 MsG0480020027.01.T01:intron 50.0%
!!! GTGCTGTTTTGCGGAGTTGA+GGG + Chr4:32228952-32228971 None:intergenic 50.0%
!!! GTTTTGGAGGGAACAGCTTG+TGG + Chr4:32226021-32226040 None:intergenic 50.0%
!!! TGCTGTTTTGCGGAGTTGAG+GGG + Chr4:32228951-32228970 None:intergenic 50.0%
AAGACCCCTTGCACACAAGG+CGG + Chr4:32226630-32226649 None:intergenic 55.0%
ACGGTGCAGGTACCAATTCC+AGG - Chr4:32228791-32228810 MsG0480020027.01.T01:intron 55.0%
AGCTGTTCCCTCCAAAACCC+AGG - Chr4:32226023-32226042 MsG0480020027.01.T01:intron 55.0%
AGGTGGAGGATCTTTGGGTG+TGG + Chr4:32229349-32229368 None:intergenic 55.0%
ATAGGCAGGGTTTGGGCATG+TGG - Chr4:32228170-32228189 MsG0480020027.01.T01:intron 55.0%
CAGGCATTTCCAGCAGGATC+AGG - Chr4:32229995-32230014 MsG0480020027.01.T01:intron 55.0%
CCCACCTATTCCCCACTTGA+AGG - Chr4:32229264-32229283 MsG0480020027.01.T01:intron 55.0%
CCCAGTTGGCACTTCTTGTG+TGG + Chr4:32228498-32228517 None:intergenic 55.0%
CCGCAAAACAGCACTGCTGA+TGG - Chr4:32228958-32228977 MsG0480020027.01.T01:intron 55.0%
CTGAAGGTAGTGCTAGGTGG+GGG + Chr4:32229457-32229476 None:intergenic 55.0%
CTGTTATTCTGGTGCGGCCT+TGG + Chr4:32228559-32228578 None:intergenic 55.0%
CTGTTTGTGGTGTGAAGGCG+TGG + Chr4:32229093-32229112 None:intergenic 55.0%
GAATAGGTGGGGGGTCGAAT+AGG + Chr4:32229255-32229274 None:intergenic 55.0%
GCAAACGGCTGCTGTCTGTT+TGG + Chr4:32228644-32228663 None:intergenic 55.0%
GCTAACAGCTGCGATTGGTG+CGG + Chr4:32229384-32229403 None:intergenic 55.0%
GCTGAAGGTAGTGCTAGGTG+GGG + Chr4:32229458-32229477 None:intergenic 55.0%
GGAATGAGTTCAGACGGTGC+AGG - Chr4:32228778-32228797 MsG0480020027.01.T01:intron 55.0%
GGAGGTGGATGATGTAGTGG+AGG + Chr4:32228832-32228851 None:intergenic 55.0%
GGCTGAAGGTAGTGCTAGGT+GGG + Chr4:32229459-32229478 None:intergenic 55.0%
GTCGGAGGTGGAGGATCTTT+GGG + Chr4:32229354-32229373 None:intergenic 55.0%
GTGGAGGCGATCCTTCAAGT+GGG + Chr4:32229278-32229297 None:intergenic 55.0%
GTGGGGGGTCGAATAGGAAA+AGG + Chr4:32229249-32229268 None:intergenic 55.0%
GTGTCCGATGCCAGCACATA+TGG + Chr4:32226380-32226399 None:intergenic 55.0%
GTTGGCACTTCTTGTGTGGC+TGG + Chr4:32228494-32228513 None:intergenic 55.0%
TAAGCCTAACAGGCCTGCAG+CGG + Chr4:32227413-32227432 None:intergenic 55.0%
TCAAGAGGACCTGATCCTGC+TGG + Chr4:32230007-32230026 None:intergenic 55.0%
TCAAGTGGGGAATAGGTGGG+GGG + Chr4:32229264-32229283 None:intergenic 55.0%
TCGAAGACCCCTTGCACACA+AGG + Chr4:32226633-32226652 None:intergenic 55.0%
TCGGGCTTATTTGGCGGAGT+CGG + Chr4:32229223-32229242 None:intergenic 55.0%
TGGAGGATCTTTGGGTGTGG+AGG + Chr4:32229346-32229365 None:intergenic 55.0%
TGGAGGCGATCCTTCAAGTG+GGG + Chr4:32229277-32229296 None:intergenic 55.0%
TGTCGGAGGTGGAGGATCTT+TGG + Chr4:32229355-32229374 None:intergenic 55.0%
TGTGGAGGCGATCCTTCAAG+TGG + Chr4:32229279-32229298 None:intergenic 55.0%
! ATTTTCAAAGCCACGCGCGC+AGG + Chr4:32229824-32229843 None:intergenic 55.0%
! TTTGCTGTGTCGCCTGCTGT+CGG + Chr4:32228666-32228685 None:intergenic 55.0%
! TTTGTGGTGTGAAGGCGTGG+AGG + Chr4:32229090-32229109 None:intergenic 55.0%
!! AGTGGTGAAGTTGGTGGAGC+TGG - Chr4:32226171-32226190 MsG0480020027.01.T01:CDS 55.0%
!! CAAGAAGTGCCAACTGGGCA+AGG - Chr4:32228500-32228519 MsG0480020027.01.T01:intron 55.0%
!! CTCTCTTTTGGTTGGACCCC+TGG + Chr4:32229571-32229590 None:intergenic 55.0%
!! CTTTTGGTTGGACCCCTGGT+CGG + Chr4:32229567-32229586 None:intergenic 55.0%
!! GCCACACAAGAAGTGCCAAC+TGG - Chr4:32228494-32228513 MsG0480020027.01.T01:intron 55.0%
!! TTTTGGTTGGACCCCTGGTC+GGG + Chr4:32229566-32229585 None:intergenic 55.0%
AAAGGACACACCACCCGACC+AGG - Chr4:32229550-32229569 MsG0480020027.01.T01:intron 60.0%
AAGGACACACCACCCGACCA+GGG - Chr4:32229551-32229570 MsG0480020027.01.T01:intron 60.0%
AGACGTGGGAGGAAGCCTGA+TGG - Chr4:32229778-32229797 MsG0480020027.01.T01:intron 60.0%
ATCTTTGGGTGTGGAGGCCG+GGG + Chr4:32229340-32229359 None:intergenic 60.0%
CAGCAGCCAGGCAAACACCA+AGG - Chr4:32228539-32228558 MsG0480020027.01.T01:intron 60.0%
CGGCTGAAGGTAGTGCTAGG+TGG + Chr4:32229460-32229479 None:intergenic 60.0%
CGGGCTTATTTGGCGGAGTC+GGG + Chr4:32229222-32229241 None:intergenic 60.0%
GATCTTTGGGTGTGGAGGCC+GGG + Chr4:32229341-32229360 None:intergenic 60.0%
GCGCGCAGGTTCCAACAACA+AGG + Chr4:32229810-32229829 None:intergenic 60.0%
GGATCTTTGGGTGTGGAGGC+CGG + Chr4:32229342-32229361 None:intergenic 60.0%
GGTTGAACTGTCGGAGGTGG+AGG + Chr4:32229363-32229382 None:intergenic 60.0%
GTAGTGCTAGGTGGGGGTTG+AGG + Chr4:32229451-32229470 None:intergenic 60.0%
GTGTGCAAGGGGTCTTCGAG+TGG - Chr4:32226634-32226653 MsG0480020027.01.T01:CDS 60.0%
TGCCACCGCCTTGTGTGCAA+GGG - Chr4:32226622-32226641 MsG0480020027.01.T01:CDS 60.0%
TGCGGTTGAACTGTCGGAGG+TGG + Chr4:32229366-32229385 None:intergenic 60.0%
TGGTGCGGTTGAACTGTCGG+AGG + Chr4:32229369-32229388 None:intergenic 60.0%
TGTCGCCTGCTGTCGGCAAA+CGG + Chr4:32228659-32228678 None:intergenic 60.0%
TTGCCACCGCCTTGTGTGCA+AGG - Chr4:32226621-32226640 MsG0480020027.01.T01:CDS 60.0%
! CTACGAGTGGTGTTGGGACC+CGG + Chr4:32228748-32228767 None:intergenic 60.0%
! GAGTCGGGCTCCTTCTAAGG+TGG + Chr4:32229207-32229226 None:intergenic 60.0%
! TACGAGTGGTGTTGGGACCC+GGG + Chr4:32228747-32228766 None:intergenic 60.0%
!! GGTGAAGTTGGTGGAGCTGG+AGG - Chr4:32226174-32226193 MsG0480020027.01.T01:CDS 60.0%
ACCCCTTGCACACAAGGCGG+TGG + Chr4:32226627-32226646 None:intergenic 65.0%
AGCAGCCGTTTGCCGACAGC+AGG - Chr4:32228651-32228670 MsG0480020027.01.T01:intron 65.0%
AGGACACACCACCCGACCAG+GGG - Chr4:32229552-32229571 MsG0480020027.01.T01:intron 65.0%
GCCACCGCCTTGTGTGCAAG+GGG - Chr4:32226623-32226642 MsG0480020027.01.T01:CDS 65.0%
GCGGAGTCGGGCTCCTTCTA+AGG + Chr4:32229210-32229229 None:intergenic 65.0%
GGGCGGCTGAAGGTAGTGCT+AGG + Chr4:32229463-32229482 None:intergenic 65.0%
GTAAACCGGCCTTCCTCCCC+CGG - Chr4:32229320-32229339 MsG0480020027.01.T01:intron 65.0%
GTGCTAGGTGGGGGTTGAGG+TGG + Chr4:32229448-32229467 None:intergenic 65.0%
GTGGGGGTTGAGGTGGCGAA+GGG + Chr4:32229441-32229460 None:intergenic 65.0%
GTTGTTGGAACCTGCGCGCG+TGG - Chr4:32229811-32229830 MsG0480020027.01.T01:intron 65.0%
TCTGCCGCTGCAGGCCTGTT+AGG - Chr4:32227406-32227425 MsG0480020027.01.T01:intron 65.0%
TCTTTGGGTGTGGAGGCCGG+GGG + Chr4:32229339-32229358 None:intergenic 65.0%
!! GTGCGGCCTTGGTGTTTGCC+TGG + Chr4:32228548-32228567 None:intergenic 65.0%
GGTGGGGGTTGAGGTGGCGA+AGG + Chr4:32229442-32229461 None:intergenic 70.0%
TGGTTGGACCCCTGGTCGGG+TGG + Chr4:32229563-32229582 None:intergenic 70.0%
GTGTGGAGGCCGGGGGAGGA+AGG + Chr4:32229332-32229351 None:intergenic 75.0%
TTGGGTGTGGAGGCCGGGGG+AGG + Chr4:32229336-32229355 None:intergenic 75.0%
! GGAGGCCGGGGGAGGAAGGC+CGG + Chr4:32229328-32229347 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 32225864 32230835 32225864 ID=MsG0480020027.01;Name=MsG0480020027.01
Chr4 mRNA 32225864 32230835 32225864 ID=MsG0480020027.01.T01;Parent=MsG0480020027.01;Name=MsG0480020027.01.T01;_AED=0.46;_eAED=0.50;_QI=52|0.6|0.81|1|0.9|0.81|11|0|379
Chr4 exon 32225864 32225942 32225864 ID=MsG0480020027.01.T01:exon:13127;Parent=MsG0480020027.01.T01
Chr4 exon 32226142 32226209 32226142 ID=MsG0480020027.01.T01:exon:13126;Parent=MsG0480020027.01.T01
Chr4 exon 32226573 32226701 32226573 ID=MsG0480020027.01.T01:exon:13125;Parent=MsG0480020027.01.T01
Chr4 exon 32228803 32228886 32228803 ID=MsG0480020027.01.T01:exon:13124;Parent=MsG0480020027.01.T01
Chr4 exon 32228994 32229059 32228994 ID=MsG0480020027.01.T01:exon:13123;Parent=MsG0480020027.01.T01
Chr4 exon 32229175 32229280 32229175 ID=MsG0480020027.01.T01:exon:13122;Parent=MsG0480020027.01.T01
Chr4 exon 32229557 32229621 32229557 ID=MsG0480020027.01.T01:exon:13121;Parent=MsG0480020027.01.T01
Chr4 exon 32229816 32229923 32229816 ID=MsG0480020027.01.T01:exon:13120;Parent=MsG0480020027.01.T01
Chr4 exon 32230014 32230201 32230014 ID=MsG0480020027.01.T01:exon:13119;Parent=MsG0480020027.01.T01
Chr4 exon 32230435 32230552 32230435 ID=MsG0480020027.01.T01:exon:13118;Parent=MsG0480020027.01.T01
Chr4 exon 32230655 32230835 32230655 ID=MsG0480020027.01.T01:exon:13117;Parent=MsG0480020027.01.T01
Chr4 five_prime_UTR 32230784 32230835 32230784 ID=MsG0480020027.01.T01:five_prime_utr;Parent=MsG0480020027.01.T01
Chr4 CDS 32230655 32230783 32230655 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32230435 32230552 32230435 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32230014 32230201 32230014 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32229816 32229923 32229816 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32229557 32229621 32229557 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32229175 32229280 32229175 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32228994 32229059 32228994 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32228803 32228886 32228803 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32226573 32226701 32226573 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32226142 32226209 32226142 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Chr4 CDS 32225864 32225942 32225864 ID=MsG0480020027.01.T01:cds;Parent=MsG0480020027.01.T01
Gene Sequence

>MsG0480020027.01.T01

ATGTCGTTACTTCAGCTTCAACCCATCAATGGAATATCACAGCTTTTGGTGAAGTCTCAATTCCCACAGAAGAAATGCAGCAGAAAAGCATTCAGGTTCATACCACAAGCTGTTCCCTCCAAAACCCAGAGGATAATGGAGAGTGTTTCTGTGAGTGGTGAAGTTGGTGGAGCTGGAGGAGCATACTCATATGAAGCTTTGAAAAGATTAGACCAGCTATGGTCAAATATTTGTTCACCTCAAGGAGTTGTGCAAGAACCTCAACAAATTGTCTCTACAATACCAAGCTTGTTTACCTCATCTGATCTTGCTGATAAAATAGAAGGTTCATATGATGTGTTAGTGTGTGGAGGAACTCTTGGAATTTTCATTGCCACCGCCTTGTGTGCAAGGGGTCTTCGAGTGGCAATTGTAGAAAGGAATGTGTTGAAAGGGAGAGAACAAGAATGGAACATATCAAGAAAGGAGCTTTTGGAACTTGTAGAAGTTGGAATCTTGGAAGAAGATGACATTGAAAGAGTCACAGCAGCAAAATTTAATCCTAATAGATGTGGATTTGAAAGCAAAGGAGATATCTGGGTCAACGACATTCTTAATCTCGGTGTTTCGCCTGTTAGGCTTATAGAGATTGTAAAGAAACGTTTTATCTCCCTCGGTGGAGTCTTTTTTGAGGGTTACAGTGTCTCCTTCATAAATGTATACGAGGATGCTGCTCTGCAAAAGGATTGCATAAAGTTGCATGGTGAATCATGCAAAGATAGAATACATGAACTTAGCATTGTTCTGAAACTTTCCGGGGACAAAATCTTGTCATCTCGTCTTATAATTGATGCCATGGGGAACTTTTCCCCTGTTGTAAAACAGGCATTTCCAGCAGGATCAGGTCCTCTTGACCGTACTACTTATATGTTCACTTATGTAGAACCTCAACCAGGATCGCCAAAATTGGAAGAATTGTTGGAAGAATACTGGAATCTGATGCCAGAATATCAGGGTGTTCCACTTGACAATCTAGAGATACTGAGAGTTATTTATGGCATCTTTCCCACATATCGTGAGAGATATAAACTTTTCTCTCTTTCTATCCATTCTCAGTATGGTAACTTATCTGAAGCTATGAAGTTAGTTGAAACTAGATAA

Protein sequence

>MsG0480020027.01.T01

MSLLQLQPINGISQLLVKSQFPQKKCSRKAFRFIPQAVPSKTQRIMESVSVSGEVGGAGGAYSYEALKRLDQLWSNICSPQGVVQEPQQIVSTIPSLFTSSDLADKIEGSYDVLVCGGTLGIFIATALCARGLRVAIVERNVLKGREQEWNISRKELLELVEVGILEEDDIERVTAAKFNPNRCGFESKGDIWVNDILNLGVSPVRLIEIVKKRFISLGGVFFEGYSVSFINVYEDAALQKDCIKLHGESCKDRIHELSIVLKLSGDKILSSRLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYVEPQPGSPKLEELLEEYWNLMPEYQGVPLDNLEILRVIYGIFPTYRERYKLFSLSIHSQYGNLSEAMKLVETR*