AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003325.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003325.01.T02 MTR_1g059670 88.562 306 5 2 1 277 1 305 0.0 538
MsG0180003325.01.T02 MTR_4g035650 63.158 247 60 2 60 277 68 312 2.35e-107 314
MsG0180003325.01.T02 MTR_4g035650 61.943 247 61 3 60 277 68 310 1.77e-103 304
MsG0180003325.01.T01 MTR_1g059670 88.562 306 5 2 1 277 1 305 0.0 538
MsG0180003325.01.T01 MTR_4g035650 63.158 247 60 2 60 277 68 312 2.35e-107 314
MsG0180003325.01.T01 MTR_4g035650 61.943 247 61 3 60 277 68 310 1.77e-103 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003325.01.T02 AT5G06130 62.583 302 78 4 10 277 15 315 1.21e-123 355
MsG0180003325.01.T02 AT5G06130 68.966 232 42 2 75 277 1 231 4.43e-109 315
MsG0180003325.01.T02 AT5G61670 63.454 249 60 2 58 277 61 307 1.07e-107 315
MsG0180003325.01.T02 AT5G61670 63.454 249 60 2 58 277 61 307 1.07e-107 315
MsG0180003325.01.T01 AT5G06130 62.583 302 78 4 10 277 15 315 1.21e-123 355
MsG0180003325.01.T01 AT5G06130 68.966 232 42 2 75 277 1 231 4.43e-109 315
MsG0180003325.01.T01 AT5G61670 63.454 249 60 2 58 277 61 307 1.07e-107 315
MsG0180003325.01.T01 AT5G61670 63.454 249 60 2 58 277 61 307 1.07e-107 315

Find 11 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATATTCAGTGTCAATA+TGG 0.322985 1:-60679085 None:intergenic
TGTCCAACCTGCCTTTGCAC+TGG 0.394247 1:+60678842 MsG0180003325.01.T01:CDS
ATGGAACTAGGACAGAATTC+TGG 0.437091 1:-60679066 None:intergenic
CATGTAAAGAATTAGTCAAA+TGG 0.467029 1:-60678902 None:intergenic
GTCCAACCTGCCTTTGCACT+GGG 0.482552 1:+60678843 MsG0180003325.01.T01:CDS
CTTCATCCCAGTGCAAAGGC+AGG 0.549940 1:-60678849 None:intergenic
ATCCCAGTGCAAAGGCAGGT+TGG 0.571963 1:-60678845 None:intergenic
AACTAGGACAGAATTCTGGC+AGG 0.584086 1:-60679062 None:intergenic
TTCAGTGTCAATATGGAACT+AGG 0.585120 1:-60679078 None:intergenic
CCTTTGCACTGGGATGAAGA+TGG 0.608589 1:+60678853 MsG0180003325.01.T01:CDS
CCATCTTCATCCCAGTGCAA+AGG 0.623251 1:-60678853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAACTAACTT+CGG - Chr1:60675795-60675814 None:intergenic 10.0%
!! AAACAAAATAAAAATGAATA+AGG + Chr1:60679009-60679028 MsG0180003325.01.T01:three_prime_UTR 10.0%
!!! ATCAAAAATATACTTTTTTA+TGG - Chr1:60675482-60675501 None:intergenic 10.0%
!!! TAAATTAATACTAAATTTTG+AGG - Chr1:60678984-60679003 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGCTTATT+GGG + Chr1:60675805-60675824 MsG0180003325.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTTGCTTAT+TGG + Chr1:60675804-60675823 MsG0180003325.01.T01:intron 10.0%
!! AAAAATGTTAAGAACTAATT+TGG - Chr1:60679243-60679262 None:intergenic 15.0%
!! AATTATAGAAAATAGCATAA+AGG - Chr1:60677663-60677682 None:intergenic 15.0%
!! ATAAAAATGAATAAGGAATT+AGG + Chr1:60679016-60679035 MsG0180003325.01.T01:three_prime_UTR 15.0%
!! ATTATAGAAAATAGCATAAA+GGG - Chr1:60677662-60677681 None:intergenic 15.0%
!!! AATTGTGACAATTTAAATTT+TGG + Chr1:60677532-60677551 MsG0180003325.01.T01:intron 15.0%
!!! ATAAAAAGTTTTTGAAATCA+AGG - Chr1:60677753-60677772 None:intergenic 15.0%
!!! ATATTGAATCCTTATTTTAA+TGG + Chr1:60678121-60678140 MsG0180003325.01.T01:intron 15.0%
!!! ATGTTAATGATTAATTTGTT+AGG + Chr1:60677787-60677806 MsG0180003325.01.T01:intron 15.0%
!!! ATTGTGACAATTTAAATTTT+GGG + Chr1:60677533-60677552 MsG0180003325.01.T01:intron 15.0%
!!! TTATTTACCTTTAATTTAAG+TGG + Chr1:60678013-60678032 MsG0180003325.01.T01:intron 15.0%
!!! TTTTGAATAACTTATGAAAA+CGG - Chr1:60676288-60676307 None:intergenic 15.0%
!! AAAATAATAAAATCCACATG+TGG - Chr1:60679145-60679164 None:intergenic 20.0%
!! AAATAATAAAATCCACATGT+GGG - Chr1:60679144-60679163 None:intergenic 20.0%
!! AACATAGTGATACTTAATAA+GGG - Chr1:60677075-60677094 None:intergenic 20.0%
!! AATTAAACAGTTGCATATAT+CGG - Chr1:60678757-60678776 None:intergenic 20.0%
!! AATTATATTCAGTGTCAATA+TGG - Chr1:60679088-60679107 None:intergenic 20.0%
!! ATATCTGCAATAATTGTATT+TGG + Chr1:60676908-60676927 MsG0180003325.01.T01:intron 20.0%
!! ATTAGTAGTACATAAAGTAT+AGG + Chr1:60677680-60677699 MsG0180003325.01.T01:intron 20.0%
!! ATTTCTTTCTTTCTGATAAA+CGG - Chr1:60678266-60678285 None:intergenic 20.0%
!! CAATAAAATCTTTCTTCTTA+TGG + Chr1:60675990-60676009 MsG0180003325.01.T01:CDS 20.0%
!! CATAAATAGAGAAATCTTAA+GGG + Chr1:60677949-60677968 MsG0180003325.01.T01:intron 20.0%
!! TAACATAGTGATACTTAATA+AGG - Chr1:60677076-60677095 None:intergenic 20.0%
!! TAGTTTAAATAAGACACTTA+AGG + Chr1:60676661-60676680 MsG0180003325.01.T01:intron 20.0%
!! TCATAAATAGAGAAATCTTA+AGG + Chr1:60677948-60677967 MsG0180003325.01.T01:intron 20.0%
!! TTATTATCTCTATTTGTCAT+AGG + Chr1:60677030-60677049 MsG0180003325.01.T01:intron 20.0%
!! TTGACTTAGAAAAAGAAAAT+TGG - Chr1:60675722-60675741 None:intergenic 20.0%
!!! AAATTCTAGAAAGAATAGAA+AGG - Chr1:60678543-60678562 None:intergenic 20.0%
!!! AAATTTGTAATTTTATGGAC+AGG + Chr1:60678575-60678594 MsG0180003325.01.T01:intron 20.0%
!!! AATTTTCTTTTTCTAAGTCA+AGG + Chr1:60675721-60675740 MsG0180003325.01.T01:CDS 20.0%
!!! ATTAATACTAAATTTTGAGG+TGG - Chr1:60678981-60679000 None:intergenic 20.0%
!!! CATATGTGTTTTTTTTGTTT+AGG + Chr1:60678814-60678833 MsG0180003325.01.T01:intron 20.0%
!!! GTCAATTTTCATTCATATTA+TGG + Chr1:60676052-60676071 MsG0180003325.01.T01:intron 20.0%
!!! TAGTTCTTAACATTTTTATC+CGG + Chr1:60679246-60679265 MsG0180003325.01.T01:intron 20.0%
!!! TTGTGACAATTTAAATTTTG+GGG + Chr1:60677534-60677553 MsG0180003325.01.T01:intron 20.0%
! AAAACAATAGAGAGAGAAAA+AGG + Chr1:60677384-60677403 MsG0180003325.01.T01:intron 25.0%
! AATAATAAAATCCACATGTG+GGG - Chr1:60679143-60679162 None:intergenic 25.0%
! ATACTTAATAAGGGTAACAA+AGG - Chr1:60677066-60677085 None:intergenic 25.0%
! CAAAATTTAAACTTTGCAAC+TGG + Chr1:60675844-60675863 MsG0180003325.01.T01:intron 25.0%
! CACTATGTTAAGTTTAAATC+TGG + Chr1:60677086-60677105 MsG0180003325.01.T01:intron 25.0%
! CATGTAAAGAATTAGTCAAA+TGG - Chr1:60678905-60678924 None:intergenic 25.0%
! CTTAGAAAAAGAAAATTGGT+TGG - Chr1:60675718-60675737 None:intergenic 25.0%
! GTAAATAAATGTGAGTGAAT+AGG - Chr1:60678001-60678020 None:intergenic 25.0%
! TAAGACAATAAAATTACCGT+CGG - Chr1:60676947-60676966 None:intergenic 25.0%
! TATGAGACCACTTAAATTAA+AGG - Chr1:60678023-60678042 None:intergenic 25.0%
! TCTTCAGTACTTAAAGATAT+TGG - Chr1:60676618-60676637 None:intergenic 25.0%
! TTTGAACATTAATCCGATTT+CGG + Chr1:60678637-60678656 MsG0180003325.01.T01:CDS 25.0%
! TTTGTCGTAAACTAAATTGA+GGG - Chr1:60679212-60679231 None:intergenic 25.0%
!! AGTTCTTAACATTTTTATCC+GGG + Chr1:60679247-60679266 MsG0180003325.01.T01:intron 25.0%
!! ATCTTTTAATCATTTGCTCT+TGG - Chr1:60677623-60677642 None:intergenic 25.0%
!! GTCTTATCATTTAAGATGAA+AGG - Chr1:60677280-60677299 None:intergenic 25.0%
!! GTTTTCATGTAACTTATAAG+CGG + Chr1:60676187-60676206 MsG0180003325.01.T01:intron 25.0%
!! TGATATTTGTACAACCATTT+TGG - Chr1:60677468-60677487 None:intergenic 25.0%
!! TTTGAAATGAATGTAGATCA+TGG - Chr1:60678102-60678121 None:intergenic 25.0%
!! TTTTGTCGTAAACTAAATTG+AGG - Chr1:60679213-60679232 None:intergenic 25.0%
!!! AACTTGCTATAAGATATAAG+CGG - Chr1:60676367-60676386 None:intergenic 25.0%
!!! TATCATTTCTCTTTTGAGAA+TGG + Chr1:60677483-60677502 MsG0180003325.01.T01:intron 25.0%
!!! TGGTTTTACTACCTTTAAAA+GGG - Chr1:60675698-60675717 None:intergenic 25.0%
!!! TTGGTTTTACTACCTTTAAA+AGG - Chr1:60675699-60675718 None:intergenic 25.0%
AACACCAAATTAGTTCATGA+GGG - Chr1:60679285-60679304 None:intergenic 30.0%
AACAGACACTCAAGTAATTT+AGG - Chr1:60676999-60677018 None:intergenic 30.0%
AATCTTTCTTCTTATGGAAG+AGG + Chr1:60675996-60676015 MsG0180003325.01.T01:CDS 30.0%
AGGAACTTTGTAAAATGAGA+GGG + Chr1:60677700-60677719 MsG0180003325.01.T01:intron 30.0%
CCAATAGCTTAATCAAAACA+AGG - Chr1:60676571-60676590 None:intergenic 30.0%
GAACAACAAAGTTGTCTTAA+AGG - Chr1:60677347-60677366 None:intergenic 30.0%
GTAGAAAAGTTGTACCAAAA+TGG + Chr1:60677451-60677470 MsG0180003325.01.T01:intron 30.0%
TAAAGTGAGAATTAAACCCA+AGG - Chr1:60677139-60677158 None:intergenic 30.0%
TAACACCAAATTAGTTCATG+AGG - Chr1:60679286-60679305 None:intergenic 30.0%
TAGGAACTTTGTAAAATGAG+AGG + Chr1:60677699-60677718 MsG0180003325.01.T01:intron 30.0%
TCTGCAATAATTGTATTTGG+CGG + Chr1:60676911-60676930 MsG0180003325.01.T01:intron 30.0%
TCTTAAAGGTTGTACCAAAA+TGG - Chr1:60677333-60677352 None:intergenic 30.0%
TGACACTATCTAATGAAGTA+TGG - Chr1:60676036-60676055 None:intergenic 30.0%
TGACTAATGAGAAATGAGTA+TGG + Chr1:60676406-60676425 MsG0180003325.01.T01:intron 30.0%
TGTTAAGTTTAAATCTGGCT+TGG + Chr1:60677091-60677110 MsG0180003325.01.T01:intron 30.0%
TTAATCATTTGCTCTTGGAA+AGG - Chr1:60677618-60677637 None:intergenic 30.0%
TTCGATAGATGAGAAACAAA+AGG - Chr1:60676768-60676787 None:intergenic 30.0%
TTTAAAAGGGGCAAAGAAAA+TGG - Chr1:60675685-60675704 None:intergenic 30.0%
! AATTTTATGGACAGGTTACT+TGG + Chr1:60678583-60678602 MsG0180003325.01.T01:intron 30.0%
! ATAACTAATTCCGTGCTTTT+CGG + Chr1:60676830-60676849 MsG0180003325.01.T01:intron 30.0%
! ATTTTCTTTGCCCCTTTTAA+AGG + Chr1:60675684-60675703 MsG0180003325.01.T01:CDS 30.0%
! GATAAAAGTATGAGTGAACA+TGG - Chr1:60677162-60677181 None:intergenic 30.0%
! GTTCTTAACATTTTTATCCG+GGG + Chr1:60679248-60679267 MsG0180003325.01.T01:intron 30.0%
! TTCTTAACATTTTTATCCGG+GGG + Chr1:60679249-60679268 MsG0180003325.01.T01:intron 30.0%
! TTTTGAGCTCATAGAATCAT+TGG - Chr1:60675588-60675607 None:intergenic 30.0%
!! AAAGAATTTGTTAGCACAGT+AGG + Chr1:60677815-60677834 MsG0180003325.01.T01:intron 30.0%
!! AAGAATTTGTTAGCACAGTA+GGG + Chr1:60677816-60677835 MsG0180003325.01.T01:intron 30.0%
!! ACTCTAAAGGAGTATTATGA+AGG - Chr1:60677859-60677878 None:intergenic 30.0%
!! AGAGAAAGTATTCATTGGTT+TGG - Chr1:60675619-60675638 None:intergenic 30.0%
!! CTCTTTTGAGAATGGATAAA+GGG + Chr1:60677491-60677510 MsG0180003325.01.T01:intron 30.0%
!! CTTATTTTCATAAGTACTCC+AGG - Chr1:60676227-60676246 None:intergenic 30.0%
!! GGTTTTACTACCTTTAAAAG+GGG - Chr1:60675697-60675716 None:intergenic 30.0%
!! TCTCTTTTGAGAATGGATAA+AGG + Chr1:60677490-60677509 MsG0180003325.01.T01:intron 30.0%
!! TTCAGTACTGATGTTAATTG+AGG + Chr1:60678406-60678425 MsG0180003325.01.T01:CDS 30.0%
!!! CCTTGTTTTGATTAAGCTAT+TGG + Chr1:60676568-60676587 MsG0180003325.01.T01:intron 30.0%
!!! GTGTATTTTGACAACCATTT+TGG + Chr1:60677316-60677335 MsG0180003325.01.T01:intron 30.0%
!!! TTTAAATCTGGCTTGGATTT+TGG + Chr1:60677098-60677117 MsG0180003325.01.T01:intron 30.0%
AACTTTGTAAAATGAGAGGG+TGG + Chr1:60677703-60677722 MsG0180003325.01.T01:intron 35.0%
AATCAGCAGCAAACTATAGT+AGG - Chr1:60677195-60677214 None:intergenic 35.0%
ATAGAGCTTCTTCAAAGTGT+TGG - Chr1:60676870-60676889 None:intergenic 35.0%
ATAGCATACCTTAGTTGCAA+AGG - Chr1:60678213-60678232 None:intergenic 35.0%
CTATTGTCTGTTCTGTTGTT+CGG + Chr1:60675520-60675539 MsG0180003325.01.T01:five_prime_UTR 35.0%
CTGCAATAATTGTATTTGGC+GGG + Chr1:60676912-60676931 MsG0180003325.01.T01:intron 35.0%
GAACCAAACAAATTGTGATC+AGG - Chr1:60678325-60678344 None:intergenic 35.0%
GAATTGGAAGTAGCTATGAA+TGG - Chr1:60675566-60675585 None:intergenic 35.0%
GCATATATCGGCAACAATTA+GGG - Chr1:60678745-60678764 None:intergenic 35.0%
GCATTTCACTATTGATCCTT+GGG + Chr1:60677120-60677139 MsG0180003325.01.T01:intron 35.0%
GCTCATAGAATCATTGGAAT+TGG - Chr1:60675582-60675601 None:intergenic 35.0%
GGAAGAAAAGGAATAGATGA+TGG - Chr1:60676528-60676547 None:intergenic 35.0%
TAATGAGAAATGAGTATGGC+AGG + Chr1:60676410-60676429 MsG0180003325.01.T01:intron 35.0%
TAGTCCCTCATGAACTAATT+TGG + Chr1:60679278-60679297 MsG0180003325.01.T01:intron 35.0%
TGCATATATCGGCAACAATT+AGG - Chr1:60678746-60678765 None:intergenic 35.0%
TTCAGTGTCAATATGGAACT+AGG - Chr1:60679081-60679100 None:intergenic 35.0%
TTGAAGAAGCTCTATCTAAC+AGG + Chr1:60676875-60676894 MsG0180003325.01.T01:intron 35.0%
TTGAGCAACAAGAGAAAACA+AGG + Chr1:60678438-60678457 MsG0180003325.01.T01:CDS 35.0%
TTTCTACACTGAAGTTGAAC+TGG + Chr1:60678488-60678507 MsG0180003325.01.T01:intron 35.0%
! ACAAAGAGCTTTTAGTGAAG+AGG + Chr1:60676470-60676489 MsG0180003325.01.T01:CDS 35.0%
! AGCAACTTTTGCATCATTGA+AGG + Chr1:60675898-60675917 MsG0180003325.01.T01:intron 35.0%
! ATGCCTGATCACAATTTGTT+TGG + Chr1:60678319-60678338 MsG0180003325.01.T01:intron 35.0%
! CAAAGAGCTTTTAGTGAAGA+GGG + Chr1:60676471-60676490 MsG0180003325.01.T01:CDS 35.0%
! GCAACTTTTGCATCATTGAA+GGG + Chr1:60675899-60675918 MsG0180003325.01.T01:intron 35.0%
! GGCAAAGAAAATGGAGTTTT+TGG - Chr1:60675676-60675695 None:intergenic 35.0%
! TAACTTCGGTGTGATTTCAT+TGG - Chr1:60675781-60675800 None:intergenic 35.0%
! TAAGATATAAGCGGCTTGTT+TGG - Chr1:60676358-60676377 None:intergenic 35.0%
! TAGAGCTTCTTCAAAGTGTT+GGG - Chr1:60676869-60676888 None:intergenic 35.0%
! TATTCCTTTTCTTCCTCATG+TGG + Chr1:60676533-60676552 MsG0180003325.01.T01:CDS 35.0%
!! AGAATTTGTTAGCACAGTAG+GGG + Chr1:60677817-60677836 MsG0180003325.01.T01:intron 35.0%
!! CTAAAGGAGTATTATGAAGG+AGG - Chr1:60677856-60677875 None:intergenic 35.0%
!! GAAGGAGAGAAAGTATTCAT+TGG - Chr1:60675624-60675643 None:intergenic 35.0%
!! GGAATAGATGATGGAATTTC+CGG - Chr1:60676519-60676538 None:intergenic 35.0%
!! GTATTCGAAATGAGAGCATT+TGG + Chr1:60676796-60676815 MsG0180003325.01.T01:intron 35.0%
!! TTTTTGGTATGTGAAGGGAA+AGG - Chr1:60675660-60675679 None:intergenic 35.0%
!!! ATCCTTATTTTAATGGCAGC+TGG + Chr1:60678128-60678147 MsG0180003325.01.T01:intron 35.0%
!!! ATGGAGTTTTTGGTATGTGA+AGG - Chr1:60675666-60675685 None:intergenic 35.0%
!!! GTTTTAAAACTCACCACATG+AGG - Chr1:60676549-60676568 None:intergenic 35.0%
!!! TGGAGTTTTTGGTATGTGAA+GGG - Chr1:60675665-60675684 None:intergenic 35.0%
AAAGGTAGAATTGTGGAGGA+AGG - Chr1:60675642-60675661 None:intergenic 40.0%
AATAAAATCCACATGTGGGG+TGG - Chr1:60679140-60679159 None:intergenic 40.0%
AGAAATGAGTATGGCAGGTT+AGG + Chr1:60676415-60676434 MsG0180003325.01.T01:intron 40.0%
AGAACAGACAATAGCAGCTA+AGG - Chr1:60675514-60675533 None:intergenic 40.0%
ATAAAATCCACATGTGGGGT+GGG - Chr1:60679139-60679158 None:intergenic 40.0%
ATCATTTGCTCTTGGAAAGG+AGG - Chr1:60677615-60677634 None:intergenic 40.0%
ATGGAACTAGGACAGAATTC+TGG - Chr1:60679069-60679088 None:intergenic 40.0%
ATTAATCCGATTTCGGCATC+TGG + Chr1:60678644-60678663 MsG0180003325.01.T01:CDS 40.0%
CAGAAAAGGATGCCACAATT+GGG - Chr1:60678367-60678386 None:intergenic 40.0%
CTACTTCAATCCGAAAAGCA+CGG - Chr1:60676843-60676862 None:intergenic 40.0%
CTCCAGCTGCCATTAAAATA+AGG - Chr1:60678133-60678152 None:intergenic 40.0%
GGCATTTCACTATTGATCCT+TGG + Chr1:60677119-60677138 MsG0180003325.01.T01:intron 40.0%
GTAGAAACATACCAGTTCCA+AGG - Chr1:60678475-60678494 None:intergenic 40.0%
GTTCAAACATACACCACTTG+TGG - Chr1:60678624-60678643 None:intergenic 40.0%
TGAAGGGAAAGGTAGAATTG+TGG - Chr1:60675649-60675668 None:intergenic 40.0%
TGCATTTGCCTTTGCAACTA+AGG + Chr1:60678202-60678221 MsG0180003325.01.T01:CDS 40.0%
TTGGAAGTAGCTATGAATGG+TGG - Chr1:60675563-60675582 None:intergenic 40.0%
TTTCATAAATCAGACCCCGA+AGG - Chr1:60677906-60677925 None:intergenic 40.0%
! AGACTTGCATTTTGTTGCTC+TGG + Chr1:60678938-60678957 MsG0180003325.01.T01:three_prime_UTR 40.0%
! AGCTATGAATGGTGGAAAGT+GGG - Chr1:60675555-60675574 None:intergenic 40.0%
! TAGCTATGAATGGTGGAAAG+TGG - Chr1:60675556-60675575 None:intergenic 40.0%
! TCAGGATTTTGTTCAGATGC+AGG + Chr1:60675933-60675952 MsG0180003325.01.T01:CDS 40.0%
! TGGGGTGCAAGTTTAGTTTA+AGG + Chr1:60677552-60677571 MsG0180003325.01.T01:intron 40.0%
AACTAGGACAGAATTCTGGC+AGG - Chr1:60679065-60679084 None:intergenic 45.0%
ACAAAATCCTGAACCGTCTC+TGG - Chr1:60675925-60675944 None:intergenic 45.0%
AGGGAAAGGTAGAATTGTGG+AGG - Chr1:60675646-60675665 None:intergenic 45.0%
AGTATTATGAAGGAGGACCC+AGG - Chr1:60677849-60677868 None:intergenic 45.0%
CACAATTGGGTCAACTTGAC+TGG - Chr1:60678354-60678373 None:intergenic 45.0%
CCAGAAAAGGATGCCACAAT+TGG - Chr1:60678368-60678387 None:intergenic 45.0%
CTCACCACATGAGGAAGAAA+AGG - Chr1:60676540-60676559 None:intergenic 45.0%
CTGGAGCTGAAATTGGGTAT+AGG + Chr1:60678147-60678166 MsG0180003325.01.T01:CDS 45.0%
GAGCTGAAATTGGGTATAGG+TGG + Chr1:60678150-60678169 MsG0180003325.01.T01:CDS 45.0%
GGAAGATGCAAATGAGATGC+CGG + Chr1:60676497-60676516 MsG0180003325.01.T01:CDS 45.0%
TAAAATCCACATGTGGGGTG+GGG - Chr1:60679138-60679157 None:intergenic 45.0%
TATAGGTGGCACGTCATATG+AGG + Chr1:60678164-60678183 MsG0180003325.01.T01:CDS 45.0%
TTTCCAGCACCAGAGCAATT+TGG - Chr1:60678713-60678732 None:intergenic 45.0%
TTTGGACACCTTGTCGTTGT+AGG - Chr1:60678695-60678714 None:intergenic 45.0%
! AAATTGCTCTGGTGCTGGAA+AGG + Chr1:60678712-60678731 MsG0180003325.01.T01:CDS 45.0%
! ACAAGGTGCAAGTATTGCCT+TGG + Chr1:60678455-60678474 MsG0180003325.01.T01:CDS 45.0%
! ACAAGGTGTCCAAATTGCTC+TGG + Chr1:60678701-60678720 MsG0180003325.01.T01:CDS 45.0%
! AGCTTTTAGTGAAGAGGGAG+AGG + Chr1:60676476-60676495 MsG0180003325.01.T01:CDS 45.0%
! ATTGTGGCATCCTTTTCTGG+TGG + Chr1:60678368-60678387 MsG0180003325.01.T01:CDS 45.0%
! CCAATTGTGGCATCCTTTTC+TGG + Chr1:60678365-60678384 MsG0180003325.01.T01:CDS 45.0%
! GAAGTACCAGATGCCGAAAT+CGG - Chr1:60678653-60678672 None:intergenic 45.0%
! TGCAAGTATTGCCTTGGAAC+TGG + Chr1:60678461-60678480 MsG0180003325.01.T01:CDS 45.0%
! TTTTGTTCAGATGCAGGTGC+AGG + Chr1:60675939-60675958 MsG0180003325.01.T01:CDS 45.0%
!! CAGTCAAGTTGACCCAATTG+TGG + Chr1:60678352-60678371 MsG0180003325.01.T01:intron 45.0%
!!! AAAACTTTTTATTTTTTTAT+AGG + Chr1:60677761-60677780 MsG0180003325.01.T01:intron 5.0%
!!! TTATAAAATTTGTAATTTTA+TGG + Chr1:60678570-60678589 MsG0180003325.01.T01:intron 5.0%
AATTGCGTGCTCTTCTCCAC+AGG + Chr1:60675746-60675765 MsG0180003325.01.T01:CDS 50.0%
ATGGCAGCTGGAGCTGAAAT+TGG + Chr1:60678140-60678159 MsG0180003325.01.T01:intron 50.0%
CACAGTAGGGGTCAAAACCT+GGG + Chr1:60677829-60677848 MsG0180003325.01.T01:intron 50.0%
CATCATTGAAGGGCCAGAGA+CGG + Chr1:60675909-60675928 MsG0180003325.01.T01:CDS 50.0%
CCATCTTCATCCCAGTGCAA+AGG - Chr1:60678856-60678875 None:intergenic 50.0%
CCTTTGCACTGGGATGAAGA+TGG + Chr1:60678853-60678872 MsG0180003325.01.T01:CDS 50.0%
TACTTCTGTTAGACCCCTGC+AGG + Chr1:60678667-60678686 MsG0180003325.01.T01:CDS 50.0%
TGCAGGTTCCTACAACGACA+AGG + Chr1:60678684-60678703 MsG0180003325.01.T01:CDS 50.0%
TGGCAGCTGGAGCTGAAATT+GGG + Chr1:60678141-60678160 MsG0180003325.01.T01:intron 50.0%
TGTCCAAATTGCTCTGGTGC+TGG + Chr1:60678707-60678726 MsG0180003325.01.T01:CDS 50.0%
TGTCGTTGTAGGAACCTGCA+GGG - Chr1:60678684-60678703 None:intergenic 50.0%
TTGTCGTTGTAGGAACCTGC+AGG - Chr1:60678685-60678704 None:intergenic 50.0%
! GCGGTTTTCGTAAGCTATCC+TGG + Chr1:60676206-60676225 MsG0180003325.01.T01:intron 50.0%
!! GGTATCGGTTGGGACTCTAA+AGG - Chr1:60677872-60677891 None:intergenic 50.0%
!! TCCTTTTCTGGTGGAGCAGT+TGG + Chr1:60678377-60678396 MsG0180003325.01.T01:CDS 50.0%
AAGGTGTACCCCAGCGGTAT+CGG - Chr1:60677887-60677906 None:intergenic 55.0%
ATACCGCTGGGGTACACCTT+CGG + Chr1:60677887-60677906 MsG0180003325.01.T01:intron 55.0%
ATCCCAGTGCAAAGGCAGGT+TGG - Chr1:60678848-60678867 None:intergenic 55.0%
CTTCATCCCAGTGCAAAGGC+AGG - Chr1:60678852-60678871 None:intergenic 55.0%
GCACAGTAGGGGTCAAAACC+TGG + Chr1:60677828-60677847 MsG0180003325.01.T01:intron 55.0%
GCCAACTGCTCCACCAGAAA+AGG - Chr1:60678381-60678400 None:intergenic 55.0%
GTCCAACCTGCCTTTGCACT+GGG + Chr1:60678843-60678862 MsG0180003325.01.T01:CDS 55.0%
GTCGTTGTAGGAACCTGCAG+GGG - Chr1:60678683-60678702 None:intergenic 55.0%
TCATTGGAGCCTGCATCCTG+TGG - Chr1:60675765-60675784 None:intergenic 55.0%
TGCTCTTCTCCACAGGATGC+AGG + Chr1:60675753-60675772 MsG0180003325.01.T01:CDS 55.0%
TGTCCAACCTGCCTTTGCAC+TGG + Chr1:60678842-60678861 MsG0180003325.01.T01:CDS 55.0%
! TGAGGGACTAACTTGTCCCC+CGG - Chr1:60679268-60679287 None:intergenic 55.0%
!! CAGGTTACTTGGCTTGCGCT+CGG + Chr1:60678594-60678613 MsG0180003325.01.T01:intron 55.0%
AATCCACATGTGGGGTGGGG+AGG - Chr1:60679135-60679154 None:intergenic 60.0%
AGAGTCCCAACCGATACCGC+TGG + Chr1:60677874-60677893 MsG0180003325.01.T01:intron 60.0%
AGTCCCAACCGATACCGCTG+GGG + Chr1:60677876-60677895 MsG0180003325.01.T01:intron 60.0%
GAGTCCCAACCGATACCGCT+GGG + Chr1:60677875-60677894 MsG0180003325.01.T01:intron 60.0%
GGAGATTGCGTGTGCAGCAG+CGG + Chr1:60676436-60676455 MsG0180003325.01.T01:CDS 60.0%
TACCGCTGGGGTACACCTTC+GGG + Chr1:60677888-60677907 MsG0180003325.01.T01:intron 60.0%
TGAAGGGCCAGAGACGGTTC+AGG + Chr1:60675915-60675934 MsG0180003325.01.T01:CDS 60.0%
!! GTACCCCAGCGGTATCGGTT+GGG - Chr1:60677882-60677901 None:intergenic 60.0%
!! TGCGCTCGGTGTTCCACAAG+TGG + Chr1:60678608-60678627 MsG0180003325.01.T01:CDS 60.0%
!! TGGCGGGCTTATTGCACCGA+CGG + Chr1:60676928-60676947 MsG0180003325.01.T01:intron 60.0%
!! TGTACCCCAGCGGTATCGGT+TGG - Chr1:60677883-60677902 None:intergenic 60.0%
ACCGCTGGGGTACACCTTCG+GGG + Chr1:60677889-60677908 MsG0180003325.01.T01:intron 65.0%
CTTCCTCCCCACCCCACATG+TGG + Chr1:60679129-60679148 MsG0180003325.01.T01:intron 65.0%
! ACCCCGAAGGTGTACCCCAG+CGG - Chr1:60677893-60677912 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 60675468 60679415 60675468 ID=MsG0180003325.01;Name=MsG0180003325.01
Chr1 mRNA 60675468 60679415 60675468 ID=MsG0180003325.01.T01;Parent=MsG0180003325.01;Name=MsG0180003325.01.T01;_AED=0.46;_eAED=0.46;_QI=156|0.85|1|1|0.57|0.5|8|241|277
Chr1 exon 60678836 60679049 60678836 ID=MsG0180003325.01.T01:exon:4071;Parent=MsG0180003325.01.T01
Chr1 exon 60679311 60679415 60679311 ID=MsG0180003325.01.T01:exon:4072;Parent=MsG0180003325.01.T01
Chr1 five_prime_UTR 60675468 60675623 60675468 ID=MsG0180003325.01.T01:five_prime_utr;Parent=MsG0180003325.01.T01
Chr1 CDS 60675624 60675796 60675624 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 CDS 60675900 60676017 60675900 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 CDS 60676432 60676554 60676432 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 CDS 60678147 60678223 60678147 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 CDS 60678355 60678482 60678355 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 CDS 60678597 60678733 60678597 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 CDS 60678836 60678913 60678836 ID=MsG0180003325.01.T01:cds;Parent=MsG0180003325.01.T01
Chr1 three_prime_UTR 60678914 60679049 60678914 ID=MsG0180003325.01.T01:three_prime_utr;Parent=MsG0180003325.01.T01
Chr1 three_prime_UTR 60679311 60679415 60679311 ID=MsG0180003325.01.T01:three_prime_utr;Parent=MsG0180003325.01.T01
Chr1 mRNA 60675468 60679136 60675468 ID=MsG0180003325.01.T02;Parent=MsG0180003325.01;Name=MsG0180003325.01.T02;_AED=0.46;_eAED=0.46;_QI=156|0.83|1|1|0.66|0.71|7|223|277
Chr1 exon 60678836 60679136 60678836 ID=MsG0180003325.01.T02:exon:4073;Parent=MsG0180003325.01.T02
Chr1 five_prime_UTR 60675468 60675623 60675468 ID=MsG0180003325.01.T02:five_prime_utr;Parent=MsG0180003325.01.T02
Chr1 CDS 60675624 60675796 60675624 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 CDS 60675900 60676017 60675900 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 CDS 60676432 60676554 60676432 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 CDS 60678147 60678223 60678147 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 CDS 60678355 60678482 60678355 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 CDS 60678597 60678733 60678597 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 CDS 60678836 60678913 60678836 ID=MsG0180003325.01.T02:cds;Parent=MsG0180003325.01.T02
Chr1 three_prime_UTR 60678914 60679136 60678914 ID=MsG0180003325.01.T02:three_prime_utr;Parent=MsG0180003325.01.T02
Gene Sequence

>MsG0180003325.01.T02

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTTCCCTTCACATACCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAGTAAAACCAACCAATTTTCTTTTTCTAAGTCAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCGAACAACTTTTGCATCATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAATAAAATCTTTCTTCTTATGGAAGAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGCTGGAGCTGAAATTGGGTATAGGTGGCACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGTCAAGTTGACCCAATTGTGGCATCCTTTTCTGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGATCTGAGAATTGATCCATTTGACTAA

>MsG0180003325.01.T01

ATGAATACTTTCTCTCCTTCCTCCACAATTCTACCTTTCCCTTCACATACCAAAAACTCCATTTTCTTTGCCCCTTTTAAAGGTAGTAAAACCAACCAATTTTCTTTTTCTAAGTCAAGGATAATTGCGTGCTCTTCTCCACAGGATGCAGGCTCCAATGAAATCACACCGAACAACTTTTGCATCATTGAAGGGCCAGAGACGGTTCAGGATTTTGTTCAGATGCAGGTGCAGGAAATTCAAGATAATATAAAGAGTAGACGCAATAAAATCTTTCTTCTTATGGAAGAGGTTAGGAGATTGCGTGTGCAGCAGCGGCTAAGAAGTATACAAAGAGCTTTTAGTGAAGAGGGAGAGGAAGATGCAAATGAGATGCCGGAAATTCCATCATCTATTCCTTTTCTTCCTCATGTGCTGGAGCTGAAATTGGGTATAGGTGGCACGTCATATGAGGATTTCATAAGAAGCTTGCATTTGCCTTTGCAACTAAGTCAAGTTGACCCAATTGTGGCATCCTTTTCTGGTGGAGCAGTTGGCGTGATTTCAGTACTGATGTTAATTGAGGCTAATAATGTTGAGCAACAAGAGAAAACAAGGTGCAAGTATTGCCTTGGAACTGGTTACTTGGCTTGCGCTCGGTGTTCCACAAGTGGTGTATGTTTGAACATTAATCCGATTTCGGCATCTGGTACTTCTGTTAGACCCCTGCAGGTTCCTACAACGACAAGGTGTCCAAATTGCTCTGGTGCTGGAAAGGTTATGTGTCCAACCTGCCTTTGCACTGGGATGAAGATGGCAAGTGAACATGATCTGAGAATTGATCCATTTGACTAA

Protein sequence

>MsG0180003325.01.T02

MNTFSPSSTILPFPSHTKNSIFFAPFKGSKTNQFSFSKSRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD*

>MsG0180003325.01.T01

MNTFSPSSTILPFPSHTKNSIFFAPFKGSKTNQFSFSKSRIIACSSPQDAGSNEITPNNFCIIEGPETVQDFVQMQVQEIQDNIKSRRNKIFLLMEEVRRLRVQQRLRSIQRAFSEEGEEDANEMPEIPSSIPFLPHVLELKLGIGGTSYEDFIRSLHLPLQLSQVDPIVASFSGGAVGVISVLMLIEANNVEQQEKTRCKYCLGTGYLACARCSTSGVCLNINPISASGTSVRPLQVPTTTRCPNCSGAGKVMCPTCLCTGMKMASEHDLRIDPFD*