AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024487.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024487.01.T01 MTR_5g011990 87.823 271 10 3 1 268 1 251 1.03e-166 461
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024487.01.T01 AT1G62780 58.148 270 78 4 1 268 1 237 4.53e-102 297

Find 74 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCTGTTAATTGAGAATT+TGG 0.095928 5:+5506561 MsG0580024487.01.T01:three_prime_UTR
TACTTTATTATCACCATTTC+TGG 0.102111 5:+5506381 MsG0580024487.01.T01:three_prime_UTR
ATCCTTTGATGTCAAGATTT+TGG 0.138015 5:-5505794 None:intergenic
TTTCCTTCAACTTAAATAAA+TGG 0.193641 5:+5504097 MsG0580024487.01.T01:exon
ATGAGGTCTTGTGGAGTATC+AGG 0.256254 5:-5504958 None:intergenic
GTCCTATTGGTCCTGTTGAT+TGG 0.268287 5:+5504225 MsG0580024487.01.T01:CDS
GGCCGGCCTAGTACACCTTC+TGG 0.301594 5:-5504334 None:intergenic
CAAACCTGTTCCTTCTTGTA+TGG 0.344252 5:-5505340 None:intergenic
TCCTATTGGTCCTGTTGATT+GGG 0.352061 5:+5504226 MsG0580024487.01.T01:CDS
AGAAGTTTGAATGCTACTTC+TGG 0.364092 5:+5504149 MsG0580024487.01.T01:CDS
TTGGCATTAAAATCCGAGTT+AGG 0.370670 5:+5505161 MsG0580024487.01.T01:CDS
TGTATTGGTCCAGGTCCTAT+TGG 0.371658 5:+5504212 MsG0580024487.01.T01:CDS
CCTAGCAAGGTGGCCAGTAT+TGG 0.381900 5:-5504356 None:intergenic
CTAGCAAGGTGGCCAGTATT+GGG 0.384134 5:-5504355 None:intergenic
TAGCCATTTATTTAAGTTGA+AGG 0.385215 5:-5504100 None:intergenic
CCAATACTGGCCACCTTGCT+AGG 0.385665 5:+5504356 MsG0580024487.01.T01:CDS
GAACCAAATTCTCAATTAAC+AGG 0.392105 5:-5506564 None:intergenic
TACGACTATGTATCTTTAGT+TGG 0.395397 5:+5506501 MsG0580024487.01.T01:three_prime_UTR
GACGACGTTCTTTCTCTTCA+CGG 0.402885 5:-5504441 None:intergenic
GTACTAGGCCGGCCCAATAC+TGG 0.406350 5:+5504343 MsG0580024487.01.T01:CDS
GCCGGCCTAGTACACCTTCT+GGG 0.410951 5:-5504333 None:intergenic
ACCACCTTGCTTGCTTGCTA+TGG 0.420173 5:-5504052 None:intergenic
CTGAGCTTGCATCTTATCAT+AGG 0.423174 5:-5505746 None:intergenic
AGTTAAGTTACCCAATCAAC+AGG 0.425418 5:-5504236 None:intergenic
CGAGATTAATCGATCATTGT+TGG 0.431377 5:+5505947 MsG0580024487.01.T01:CDS
TAGGCATCTGCATAAGCAAA+TGG 0.436984 5:-5505727 None:intergenic
TAAATGGCTACGCTTAACTT+TGG 0.446560 5:+5504113 MsG0580024487.01.T01:exon
AAATCCACTATTGTGTGTAT+TGG 0.451283 5:+5504197 MsG0580024487.01.T01:CDS
TTCAATACAGTTGCTGGAGT+TGG 0.461932 5:+5505914 MsG0580024487.01.T01:intron
ACCCAATCAACAGGACCAAT+AGG 0.472506 5:-5504227 None:intergenic
CTTACTTGACACTGAGGCTC+AGG 0.483234 5:+5504987 MsG0580024487.01.T01:CDS
TGGACCAATACACACAATAG+TGG 0.498779 5:-5504201 None:intergenic
TGTATCTTTAGTTGGAAAGC+TGG 0.504899 5:+5506509 MsG0580024487.01.T01:three_prime_UTR
GAAGCAAGCTGCAGAATACA+TGG 0.509642 5:+5506295 MsG0580024487.01.T01:intron
TAGGACCCAGAAGGTGTACT+AGG 0.511032 5:+5504328 MsG0580024487.01.T01:intron
AAGGCCATACAAGAAGGAAC+AGG 0.513579 5:+5505336 MsG0580024487.01.T01:CDS
TTCACGGACTTGACGCTCAA+AGG 0.514787 5:-5504425 None:intergenic
ACTATTGTGTGTATTGGTCC+AGG 0.514965 5:+5504203 MsG0580024487.01.T01:CDS
GGAGGATAGATTGACTGAGC+TGG 0.528319 5:+5505302 MsG0580024487.01.T01:CDS
AGGCATCTGCATAAGCAAAT+GGG 0.536522 5:-5505726 None:intergenic
ATGCAAGCTTACTCCTTGCT+CGG 0.541096 5:+5505698 MsG0580024487.01.T01:CDS
AAGTGCACATGGTGCCAACC+AGG 0.543322 5:+5505992 MsG0580024487.01.T01:CDS
CAAGGTGGCCAGTATTGGGC+CGG 0.546539 5:-5504351 None:intergenic
CAAATGGGAGCAACCGAGCA+AGG 0.557465 5:-5505711 None:intergenic
AGCATTCAAACTTCTTGTTG+TGG 0.561221 5:-5504141 None:intergenic
ACCCAGAAGGTGTACTAGGC+CGG 0.561282 5:+5504332 MsG0580024487.01.T01:CDS
AACCAAAATCTTGACATCAA+AGG 0.566416 5:+5505792 MsG0580024487.01.T01:CDS
AAGTATTCAATGAGGTCTTG+TGG 0.566777 5:-5504967 None:intergenic
AAATCGAAGCTGTCCTAACT+CGG 0.569095 5:-5505174 None:intergenic
AATACATGGAGAAGCTCCGT+GGG 0.575310 5:+5506309 MsG0580024487.01.T01:CDS
AGCTCAGCTCATAAAAGCCA+AGG 0.578424 5:+5505762 MsG0580024487.01.T01:CDS
TGAGGTCTTGTGGAGTATCA+GGG 0.585430 5:-5504957 None:intergenic
GTAACCATAGCAAGCAAGCA+AGG 0.586146 5:+5504048 MsG0580024487.01.T01:five_prime_UTR
TTTCGAAACTTATGGAGCAG+AGG 0.602773 5:+5504173 MsG0580024487.01.T01:CDS
TCTTAAACTCAAGCCTAGCA+AGG 0.605985 5:-5504369 None:intergenic
TTAGAGAAGGCCATACAAGA+AGG 0.624872 5:+5505330 MsG0580024487.01.T01:CDS
AAGTAAACTTACATCACGAA+GGG 0.626470 5:-5504467 None:intergenic
TCAACAGGACCAATAGGACC+TGG 0.627773 5:-5504221 None:intergenic
AAAGTAAACTTACATCACGA+AGG 0.630395 5:-5504468 None:intergenic
ATGATTTCTGCAGCTTACGG+AGG 0.630425 5:+5505284 MsG0580024487.01.T01:intron
ATATTTGATACAATTATCGA+CGG 0.631236 5:-5506413 None:intergenic
TGAGCTGGAGGCTTTAGAGA+AGG 0.633356 5:+5505317 MsG0580024487.01.T01:CDS
ATTTGCTGTTAACAAAACGC+AGG 0.637369 5:+5505193 MsG0580024487.01.T01:CDS
GGATAGATTGACTGAGCTGG+AGG 0.664651 5:+5505305 MsG0580024487.01.T01:CDS
GAATACATGGAGAAGCTCCG+TGG 0.672335 5:+5506308 MsG0580024487.01.T01:CDS
AGATTGCAAGAATGAGACCA+CGG 0.675769 5:+5505022 MsG0580024487.01.T01:CDS
TGTCAAGTAAGTATTCAATG+AGG 0.689411 5:-5504975 None:intergenic
TGTATTTGAGAACAGCCCCA+CGG 0.699113 5:-5506325 None:intergenic
TAAACTCAAGCCTAGCAAGG+TGG 0.709876 5:-5504366 None:intergenic
TGAATACTTACTTGACACTG+AGG 0.714178 5:+5504981 MsG0580024487.01.T01:CDS
TGATTGATGTAGGACCCAGA+AGG 0.731704 5:+5504319 MsG0580024487.01.T01:intron
ACCATAGCAAGCAAGCAAGG+TGG 0.741666 5:+5504051 MsG0580024487.01.T01:five_prime_UTR
GAAAACATATCAAGTGCACA+TGG 0.748043 5:+5505981 MsG0580024487.01.T01:CDS
ATACATGGAGAAGCTCCGTG+GGG 0.765327 5:+5506310 MsG0580024487.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTTAGAGATTAAAT+TGG + Chr5:5504799-5504818 MsG0580024487.01.T01:intron 10.0%
!! TTGATATATTAACAATTTGA+AGG + Chr5:5505574-5505593 MsG0580024487.01.T01:intron 15.0%
!! ACTAAGCAAATGAAAAATAA+CGG - Chr5:5504927-5504946 None:intergenic 20.0%
!! ATATTTGATACAATTATCGA+CGG - Chr5:5506416-5506435 None:intergenic 20.0%
!! CACTAGAATAATTTATTCAA+TGG - Chr5:5505245-5505264 None:intergenic 20.0%
!! TACAATTTCATGAACTAAAT+TGG - Chr5:5505395-5505414 None:intergenic 20.0%
!! TTTCCTTCAACTTAAATAAA+TGG + Chr5:5504097-5504116 MsG0580024487.01.T01:exon 20.0%
!!! AACTTTTATGTTTCTAGTTT+CGG - Chr5:5506162-5506181 None:intergenic 20.0%
!!! AATTTAGTTCATGAAATTGT+AGG + Chr5:5505394-5505413 MsG0580024487.01.T01:intron 20.0%
!!! ATTTAGTTCATGAAATTGTA+GGG + Chr5:5505395-5505414 MsG0580024487.01.T01:intron 20.0%
!!! GATTAGAGTAATAATCATTT+TGG - Chr5:5504717-5504736 None:intergenic 20.0%
!!! GTGAAATTTTCTTAATTTCA+AGG - Chr5:5505436-5505455 None:intergenic 20.0%
!!! TAGCCTTTATTATTTTATGA+CGG + Chr5:5504887-5504906 MsG0580024487.01.T01:intron 20.0%
!!! TTCTTTATAGTTGATAGTAT+CGG + Chr5:5505851-5505870 MsG0580024487.01.T01:intron 20.0%
! AAATTGGCTATTTGATCAAT+TGG + Chr5:5505631-5505650 MsG0580024487.01.T01:intron 25.0%
! AATGAGTTAAAGATTATAGC+TGG - Chr5:5506106-5506125 None:intergenic 25.0%
! AATTGATCAAATAGCCAATT+TGG - Chr5:5505632-5505651 None:intergenic 25.0%
! ATTTAGAGATTAAATTGGAG+AGG + Chr5:5504804-5504823 MsG0580024487.01.T01:intron 25.0%
! CAGAAATCATCATTGTAAAA+AGG - Chr5:5505274-5505293 None:intergenic 25.0%
! CATGTTCAGTAAATTAAATC+TGG - Chr5:5506193-5506212 None:intergenic 25.0%
! GAACCGTCATAAAATAATAA+AGG - Chr5:5504893-5504912 None:intergenic 25.0%
! GAATAAATTATTCTAGTGTC+TGG + Chr5:5505247-5505266 MsG0580024487.01.T01:intron 25.0%
! TACTTTATTATCACCATTTC+TGG + Chr5:5506381-5506400 MsG0580024487.01.T01:three_prime_UTR 25.0%
! TTAATATATCAAAACAGTCC+TGG - Chr5:5505566-5505585 None:intergenic 25.0%
! TTTAGAGATTAAATTGGAGA+GGG + Chr5:5504805-5504824 MsG0580024487.01.T01:intron 25.0%
! TTTGATACTTTCAAAGACTA+TGG + Chr5:5504666-5504685 MsG0580024487.01.T01:intron 25.0%
! TTTGATTGATTGATTGATGT+AGG + Chr5:5504309-5504328 MsG0580024487.01.T01:intron 25.0%
!! ATTAAACGACGAATTCTTTT+TGG + Chr5:5505142-5505161 MsG0580024487.01.T01:CDS 25.0%
!! CAGATTTAATTTACTGAACA+TGG + Chr5:5506191-5506210 MsG0580024487.01.T01:intron 25.0%
!! CATTCAATTGATATTTTACC+TGG - Chr5:5506013-5506032 None:intergenic 25.0%
!! GTGTGTTTTCTTAGTAATTT+TGG + Chr5:5504570-5504589 MsG0580024487.01.T01:intron 25.0%
!! TGATATGTTTTCATCAAGAA+GGG - Chr5:5505973-5505992 None:intergenic 25.0%
!! TGATTGAGAATTTTCAAATC+CGG - Chr5:5505467-5505486 None:intergenic 25.0%
!! TTGATATGTTTTCATCAAGA+AGG - Chr5:5505974-5505993 None:intergenic 25.0%
!!! TAGCCATTTATTTAAGTTGA+AGG - Chr5:5504103-5504122 None:intergenic 25.0%
AAAGTAAACTTACATCACGA+AGG - Chr5:5504471-5504490 None:intergenic 30.0%
AAATCCACTATTGTGTGTAT+TGG + Chr5:5504197-5504216 MsG0580024487.01.T01:CDS 30.0%
AACCAAAATCTTGACATCAA+AGG + Chr5:5505792-5505811 MsG0580024487.01.T01:CDS 30.0%
AAGTAAACTTACATCACGAA+GGG - Chr5:5504470-5504489 None:intergenic 30.0%
CATCCTGTTAATTGAGAATT+TGG + Chr5:5506561-5506580 MsG0580024487.01.T01:three_prime_UTR 30.0%
GAAAATTTCACAATGATCTC+CGG + Chr5:5505445-5505464 MsG0580024487.01.T01:intron 30.0%
GAACCAAATTCTCAATTAAC+AGG - Chr5:5506567-5506586 None:intergenic 30.0%
TACGACTATGTATCTTTAGT+TGG + Chr5:5506501-5506520 MsG0580024487.01.T01:three_prime_UTR 30.0%
TGTCAAGTAAGTATTCAATG+AGG - Chr5:5504978-5504997 None:intergenic 30.0%
TTTATCTTCAATACAGTTGC+TGG + Chr5:5505908-5505927 MsG0580024487.01.T01:intron 30.0%
TTTGAACATAACAGAACTTG+TGG + Chr5:5506220-5506239 MsG0580024487.01.T01:intron 30.0%
! AAATATGCTGTACTCTAAGA+AGG - Chr5:5506131-5506150 None:intergenic 30.0%
! AATATGCTGTACTCTAAGAA+GGG - Chr5:5506130-5506149 None:intergenic 30.0%
! ACTTCTGTTCTAGTTAAACT+AGG + Chr5:5505880-5505899 MsG0580024487.01.T01:intron 30.0%
! ATCAGTGATTTTCAATATCC+AGG + Chr5:5505545-5505564 MsG0580024487.01.T01:intron 30.0%
! ATCCTTTGATGTCAAGATTT+TGG - Chr5:5505797-5505816 None:intergenic 30.0%
! CAATTGATATTTTACCTGGT+TGG - Chr5:5506009-5506028 None:intergenic 30.0%
! TTTTGGTCTCTAAATATTCG+AGG - Chr5:5504700-5504719 None:intergenic 30.0%
!!! GAAAACTTGTCATTTTAGCA+TGG - Chr5:5504779-5504798 None:intergenic 30.0%
!!! GGAATTGTCAATTTTGAAAC+AGG + Chr5:5506064-5506083 MsG0580024487.01.T01:intron 30.0%
!!! TTGATGTCAAGATTTTGGTT+AGG - Chr5:5505792-5505811 None:intergenic 30.0%
AAGGAACAGGTTTGTGAAAA+TGG + Chr5:5505349-5505368 MsG0580024487.01.T01:intron 35.0%
AAGTATTCAATGAGGTCTTG+TGG - Chr5:5504970-5504989 None:intergenic 35.0%
AATTGGCGATTCACTCTATT+CGG - Chr5:5505378-5505397 None:intergenic 35.0%
AGATTATAGCTGGATGATAC+TGG - Chr5:5506096-5506115 None:intergenic 35.0%
AGCATTCAAACTTCTTGTTG+TGG - Chr5:5504144-5504163 None:intergenic 35.0%
AGTTAAGTTACCCAATCAAC+AGG - Chr5:5504239-5504258 None:intergenic 35.0%
ATGATGATTTCTGCAGCTTA+CGG + Chr5:5505281-5505300 MsG0580024487.01.T01:intron 35.0%
ATTTGGTCCTTGAAATGGTA+CGG - Chr5:5505615-5505634 None:intergenic 35.0%
CGAGATTAATCGATCATTGT+TGG + Chr5:5505947-5505966 MsG0580024487.01.T01:CDS 35.0%
GAAAACATATCAAGTGCACA+TGG + Chr5:5505981-5506000 MsG0580024487.01.T01:CDS 35.0%
TAAATGGCTACGCTTAACTT+TGG + Chr5:5504113-5504132 MsG0580024487.01.T01:exon 35.0%
TACCATTTCAAGGACCAAAT+TGG + Chr5:5505615-5505634 MsG0580024487.01.T01:intron 35.0%
TGAATACTTACTTGACACTG+AGG + Chr5:5504981-5505000 MsG0580024487.01.T01:CDS 35.0%
TGTATCTTTAGTTGGAAAGC+TGG + Chr5:5506509-5506528 MsG0580024487.01.T01:three_prime_UTR 35.0%
TTGGCATTAAAATCCGAGTT+AGG + Chr5:5505161-5505180 MsG0580024487.01.T01:CDS 35.0%
! AGAAGTTTGAATGCTACTTC+TGG + Chr5:5504149-5504168 MsG0580024487.01.T01:CDS 35.0%
! AGGTATCTGACTCTTTTTGT+TGG + Chr5:5505213-5505232 MsG0580024487.01.T01:intron 35.0%
!! ATTTGCTGTTAACAAAACGC+AGG + Chr5:5505193-5505212 MsG0580024487.01.T01:CDS 35.0%
!!! AACTTGTCATTTTAGCATGG+TGG - Chr5:5504776-5504795 None:intergenic 35.0%
!!! CTTCTGGTTTTCGAAACTTA+TGG + Chr5:5504165-5504184 MsG0580024487.01.T01:CDS 35.0%
!!! GATTTTGGTTAGGTTTTCCT+TGG - Chr5:5505782-5505801 None:intergenic 35.0%
AAATCGAAGCTGTCCTAACT+CGG - Chr5:5505177-5505196 None:intergenic 40.0%
ACAATTCCACACACAGATTC+TGG - Chr5:5506052-5506071 None:intergenic 40.0%
AGATTGCAAGAATGAGACCA+CGG + Chr5:5505022-5505041 MsG0580024487.01.T01:CDS 40.0%
AGCCAATTTGGTCCTTGAAA+TGG - Chr5:5505620-5505639 None:intergenic 40.0%
AGGCATCTGCATAAGCAAAT+GGG - Chr5:5505729-5505748 None:intergenic 40.0%
CAAACCTGTTCCTTCTTGTA+TGG - Chr5:5505343-5505362 None:intergenic 40.0%
CACACACAGATTCTGGTAAT+CGG - Chr5:5506045-5506064 None:intergenic 40.0%
CTGAGCTTGCATCTTATCAT+AGG - Chr5:5505749-5505768 None:intergenic 40.0%
TAGGCATCTGCATAAGCAAA+TGG - Chr5:5505730-5505749 None:intergenic 40.0%
TCTTAAACTCAAGCCTAGCA+AGG - Chr5:5504372-5504391 None:intergenic 40.0%
TGGACCAATACACACAATAG+TGG - Chr5:5504204-5504223 None:intergenic 40.0%
TTAGAGAAGGCCATACAAGA+AGG + Chr5:5505330-5505349 MsG0580024487.01.T01:CDS 40.0%
TTCAATACAGTTGCTGGAGT+TGG + Chr5:5505914-5505933 MsG0580024487.01.T01:intron 40.0%
TTCATGAAATTGTAGGGTGC+TGG + Chr5:5505401-5505420 MsG0580024487.01.T01:intron 40.0%
TTTCGAAACTTATGGAGCAG+AGG + Chr5:5504173-5504192 MsG0580024487.01.T01:CDS 40.0%
! ACGGCACAATTTTCCAGAAA+TGG - Chr5:5506397-5506416 None:intergenic 40.0%
! ACTATTGTGTGTATTGGTCC+AGG + Chr5:5504203-5504222 MsG0580024487.01.T01:CDS 40.0%
! TCCTATTGGTCCTGTTGATT+GGG + Chr5:5504226-5504245 MsG0580024487.01.T01:CDS 40.0%
!! TTGAAAAGTACTACGAACCG+TGG - Chr5:5505042-5505061 None:intergenic 40.0%
AAGGCCATACAAGAAGGAAC+AGG + Chr5:5505336-5505355 MsG0580024487.01.T01:CDS 45.0%
AATACATGGAGAAGCTCCGT+GGG + Chr5:5506309-5506328 MsG0580024487.01.T01:CDS 45.0%
ACCCAATCAACAGGACCAAT+AGG - Chr5:5504230-5504249 None:intergenic 45.0%
AGCTCAGCTCATAAAAGCCA+AGG + Chr5:5505762-5505781 MsG0580024487.01.T01:CDS 45.0%
ATGATTTCTGCAGCTTACGG+AGG + Chr5:5505284-5505303 MsG0580024487.01.T01:intron 45.0%
ATGCAAGCTTACTCCTTGCT+CGG + Chr5:5505698-5505717 MsG0580024487.01.T01:CDS 45.0%
CGATTACCAGAATCTGTGTG+TGG + Chr5:5506043-5506062 MsG0580024487.01.T01:intron 45.0%
GAAGCAAGCTGCAGAATACA+TGG + Chr5:5506295-5506314 MsG0580024487.01.T01:intron 45.0%
GACGACGTTCTTTCTCTTCA+CGG - Chr5:5504444-5504463 None:intergenic 45.0%
GTAACCATAGCAAGCAAGCA+AGG + Chr5:5504048-5504067 MsG0580024487.01.T01:five_prime_UTR 45.0%
GTCCTATTGGTCCTGTTGAT+TGG + Chr5:5504225-5504244 MsG0580024487.01.T01:CDS 45.0%
TAAACTCAAGCCTAGCAAGG+TGG - Chr5:5504369-5504388 None:intergenic 45.0%
TGATTGATGTAGGACCCAGA+AGG + Chr5:5504319-5504338 MsG0580024487.01.T01:intron 45.0%
TGTATTTGAGAACAGCCCCA+CGG - Chr5:5506328-5506347 None:intergenic 45.0%
! ATGAGGTCTTGTGGAGTATC+AGG - Chr5:5504961-5504980 None:intergenic 45.0%
! TGAGGTCTTGTGGAGTATCA+GGG - Chr5:5504960-5504979 None:intergenic 45.0%
! TGTATTGGTCCAGGTCCTAT+TGG + Chr5:5504212-5504231 MsG0580024487.01.T01:CDS 45.0%
ACCATAGCAAGCAAGCAAGG+TGG + Chr5:5504051-5504070 MsG0580024487.01.T01:five_prime_UTR 50.0%
ATACATGGAGAAGCTCCGTG+GGG + Chr5:5506310-5506329 MsG0580024487.01.T01:CDS 50.0%
CTAGCAAGGTGGCCAGTATT+GGG - Chr5:5504358-5504377 None:intergenic 50.0%
CTTACTTGACACTGAGGCTC+AGG + Chr5:5504987-5505006 MsG0580024487.01.T01:CDS 50.0%
GAATACATGGAGAAGCTCCG+TGG + Chr5:5506308-5506327 MsG0580024487.01.T01:CDS 50.0%
GGAGGATAGATTGACTGAGC+TGG + Chr5:5505302-5505321 MsG0580024487.01.T01:CDS 50.0%
GGATAGATTGACTGAGCTGG+AGG + Chr5:5505305-5505324 MsG0580024487.01.T01:CDS 50.0%
GTCGACACCGTACCATTTCA+AGG + Chr5:5505605-5505624 MsG0580024487.01.T01:intron 50.0%
TCAACAGGACCAATAGGACC+TGG - Chr5:5504224-5504243 None:intergenic 50.0%
TTCACGGACTTGACGCTCAA+AGG - Chr5:5504428-5504447 None:intergenic 50.0%
! ACCACCTTGCTTGCTTGCTA+TGG - Chr5:5504055-5504074 None:intergenic 50.0%
! TAGGACCCAGAAGGTGTACT+AGG + Chr5:5504328-5504347 MsG0580024487.01.T01:intron 50.0%
! TGCAGCTTGCTTCTGCAACA+AGG - Chr5:5506288-5506307 None:intergenic 50.0%
! TTGGAGAGGGCGTGAAACTT+TGG + Chr5:5504818-5504837 MsG0580024487.01.T01:intron 50.0%
!! TGAGCTGGAGGCTTTAGAGA+AGG + Chr5:5505317-5505336 MsG0580024487.01.T01:CDS 50.0%
CAAATGGGAGCAACCGAGCA+AGG - Chr5:5505714-5505733 None:intergenic 55.0%
CCAATACTGGCCACCTTGCT+AGG + Chr5:5504356-5504375 MsG0580024487.01.T01:CDS 55.0%
CCTAGCAAGGTGGCCAGTAT+TGG - Chr5:5504359-5504378 None:intergenic 55.0%
! AAGTGCACATGGTGCCAACC+AGG + Chr5:5505992-5506011 MsG0580024487.01.T01:CDS 55.0%
! ACCCAGAAGGTGTACTAGGC+CGG + Chr5:5504332-5504351 MsG0580024487.01.T01:CDS 55.0%
GCCGGCCTAGTACACCTTCT+GGG - Chr5:5504336-5504355 None:intergenic 60.0%
GTACTAGGCCGGCCCAATAC+TGG + Chr5:5504343-5504362 MsG0580024487.01.T01:CDS 60.0%
! CAAGGTGGCCAGTATTGGGC+CGG - Chr5:5504354-5504373 None:intergenic 60.0%
GGCCGGCCTAGTACACCTTC+TGG - Chr5:5504337-5504356 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5504033 5506596 5504033 ID=MsG0580024487.01;Name=MsG0580024487.01
Chr5 mRNA 5504033 5506596 5504033 ID=MsG0580024487.01.T01;Parent=MsG0580024487.01;Name=MsG0580024487.01.T01;_AED=0.38;_eAED=0.41;_QI=83|0.85|0.87|1|1|1|8|238|268
Chr5 exon 5504033 5504247 5504033 ID=MsG0580024487.01.T01:exon:19073;Parent=MsG0580024487.01.T01
Chr5 exon 5504331 5504477 5504331 ID=MsG0580024487.01.T01:exon:19074;Parent=MsG0580024487.01.T01
Chr5 exon 5504946 5505043 5504946 ID=MsG0580024487.01.T01:exon:19075;Parent=MsG0580024487.01.T01
Chr5 exon 5505142 5505214 5505142 ID=MsG0580024487.01.T01:exon:19076;Parent=MsG0580024487.01.T01
Chr5 exon 5505297 5505357 5505297 ID=MsG0580024487.01.T01:exon:19077;Parent=MsG0580024487.01.T01
Chr5 exon 5505686 5505828 5505686 ID=MsG0580024487.01.T01:exon:19078;Parent=MsG0580024487.01.T01
Chr5 exon 5505924 5506013 5505924 ID=MsG0580024487.01.T01:exon:19079;Parent=MsG0580024487.01.T01
Chr5 exon 5506296 5506596 5506296 ID=MsG0580024487.01.T01:exon:19080;Parent=MsG0580024487.01.T01
Chr5 five_prime_UTR 5504033 5504115 5504033 ID=MsG0580024487.01.T01:five_prime_utr;Parent=MsG0580024487.01.T01
Chr5 CDS 5504116 5504247 5504116 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5504331 5504477 5504331 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5504946 5505043 5504946 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5505142 5505214 5505142 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5505297 5505357 5505297 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5505686 5505828 5505686 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5505924 5506013 5505924 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 CDS 5506296 5506358 5506296 ID=MsG0580024487.01.T01:cds;Parent=MsG0580024487.01.T01
Chr5 three_prime_UTR 5506359 5506596 5506359 ID=MsG0580024487.01.T01:three_prime_utr;Parent=MsG0580024487.01.T01
Gene Sequence

>MsG0580024487.01.T01

ATGGCTACGCTTAACTTTGGCATAGCCACAACAAGAAGTTTGAATGCTACTTCTGGTTTTCGAAACTTATGGAGCAGAGGCAAATCCACTATTGTGTGTATTGGTCCAGGTCCTATTGGTCCTGTTGATTGGGACCCAGAAGGTGTACTAGGCCGGCCCAATACTGGCCACCTTGCTAGGCTTGAGTTTAAGAGACGTCTTGAGAAAGATTCTGAAGCTCGAGAAGCCTTTGAGCGTCAAGTCCGTGAAGAGAAAGAACGTCGTCGAGCCCTTCGTGATTCTCGTGATGTCCCTGATACTCCACAAGACCTCATTGAATACTTACTTGACACTGAGGCTCAGGAGATTGAATTTGAGATTGCAAGAATGAGACCACGATTAAACGACGAATTCTTTTTGGCATTAAAATCCGAGTTAGGACAGCTTCGATTTGCTGTTAACAAAACGCAGCTTACGGAGGATAGATTGACTGAGCTGGAGGCTTTAGAGAAGGCCATACAAGAAGGAACAGAAACTACTTATAATGCAAGCTTACTCCTTGCTCGGTTGCTCCCATTTGCTTATGCAGATGCCTATGATAAGATGCAAGCTCAGCTCATAAAAGCCAAGGAAAACCTAACCAAAATCTTGACATCAAAGGATGTCAAAACAACTTTGCTGGAGTTGGTTGAGCGCAACGAGATTAATCGATCATTGTTGGCCCTTCTTGATGAAAACATATCAAGTGCACATGGTGCCAACCAGAAGCAAGCTGCAGAATACATGGAGAAGCTCCGTGGGGCTGTTCTCAAATACATTACAGTTTAG

Protein sequence

>MsG0580024487.01.T01

MATLNFGIATTRSLNATSGFRNLWSRGKSTIVCIGPGPIGPVDWDPEGVLGRPNTGHLARLEFKRRLEKDSEAREAFERQVREEKERRRALRDSRDVPDTPQDLIEYLLDTEAQEIEFEIARMRPRLNDEFFLALKSELGQLRFAVNKTQLTEDRLTELEALEKAIQEGTETTYNASLLLARLLPFAYADAYDKMQAQLIKAKENLTKILTSKDVKTTLLELVERNEINRSLLALLDENISSAHGANQKQAAEYMEKLRGAVLKYITV*