AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026081.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026081.01.T01 MTR_5g039210 67.589 253 19 3 2 254 31 220 9.81e-115 328
MsG0580026081.01.T01 MTR_5g039210 93.377 151 7 1 2 152 31 178 1.58e-101 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026081.01.T01 AT1G26940 59.843 254 39 3 1 254 5 195 5.67e-103 297
MsG0580026081.01.T01 AT1G26940 60.079 253 38 3 2 254 37 226 3.21e-102 296

Find 59 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTCTACGTGCTTCTATT+AGG 0.182477 5:+30337679 None:intergenic
TCTTCTTTGTTCCTCATTCA+TGG 0.236324 5:+30342480 None:intergenic
TATTCTACGTGCTTCTATTA+GGG 0.244068 5:+30337680 None:intergenic
TAACACCAATCATTTCTTTC+GGG 0.252702 5:-30342680 MsG0580026081.01.T01:intron
TGACAAATATTCCCTCTTTA+CGG 0.284665 5:+30341770 None:intergenic
GAAAATGTGGTCAACTGTTT+TGG 0.306456 5:+30342726 None:intergenic
CAATAGCAGCTCAATATAAA+AGG 0.316605 5:-30337522 MsG0580026081.01.T01:three_prime_UTR
TCGTGAATGCAGACAAATTA+TGG 0.318879 5:-30342784 None:intergenic
ATAACACCAATCATTTCTTT+CGG 0.318939 5:-30342681 MsG0580026081.01.T01:CDS
TAATAGAAGCACGTAGAATA+TGG 0.326894 5:-30337677 MsG0580026081.01.T01:three_prime_UTR
AATTATGGAGATATTGAGTT+TGG 0.330974 5:-30342769 MsG0580026081.01.T01:CDS
ACTATATGATATCCAGATAT+TGG 0.338025 5:-30337597 MsG0580026081.01.T01:three_prime_UTR
AAAGAGGATCCACCACTATC+TGG 0.341326 5:+30341975 None:intergenic
CATTCGCAACATCTGCTACT+TGG 0.346902 5:+30342515 None:intergenic
TCTTAACAAACACCAATATC+TGG 0.347320 5:+30337585 None:intergenic
GACAAATATTCCCTCTTTAC+GGG 0.362795 5:+30341771 None:intergenic
CTTCTTTGTTCCTCATTCAT+GGG 0.373755 5:+30342481 None:intergenic
TTCAATGCTTAGGTAGATAA+GGG 0.376717 5:-30342547 MsG0580026081.01.T01:intron
CCAACTCACAACAAAGATTT+CGG 0.388593 5:+30337941 None:intergenic
ATCCTCTCATCATATTACTA+TGG 0.396619 5:-30340083 MsG0580026081.01.T01:intron
GGAAATTCTCCTCATCTTGA+TGG 0.409673 5:-30341939 MsG0580026081.01.T01:CDS
TACCTGTCTTTCAACTTCAA+TGG 0.415502 5:+30337809 None:intergenic
TGCAACAGCAAGATTTAAAA+CGG 0.428884 5:+30337905 None:intergenic
TTCAAGCTTGTGAGACTTGG+AGG 0.430497 5:-30342706 MsG0580026081.01.T01:CDS
ATTCAATGCTTAGGTAGATA+AGG 0.434823 5:-30342548 MsG0580026081.01.T01:intron
ATTCGCAACATCTGCTACTT+GGG 0.441969 5:+30342516 None:intergenic
GAAGCTGAAAAGACCGTTGT+TGG 0.443390 5:-30342457 MsG0580026081.01.T01:CDS
CCGAAATCTTTGTTGTGAGT+TGG 0.467341 5:-30337941 MsG0580026081.01.T01:CDS
TAGTGATGTCAAACATGTCC+GGG 0.470422 5:-30342428 MsG0580026081.01.T01:CDS
TTAGTGATGTCAAACATGTC+CGG 0.474462 5:-30342429 MsG0580026081.01.T01:CDS
ATATCATATAGTATTTCTCT+TGG 0.475734 5:+30337608 None:intergenic
TGTCCGGGGTATTCTTTCCA+TGG 0.486863 5:-30342413 MsG0580026081.01.T01:CDS
AGCCATTGAAGTTGAAAGAC+AGG 0.503275 5:-30337811 MsG0580026081.01.T01:intron
GTCTCACAAGCTTGAAAATG+TGG 0.508296 5:+30342713 None:intergenic
GCAACAGCAAGATTTAAAAC+GGG 0.515401 5:+30337906 None:intergenic
GGGGTATTCTTTCCATGGGA+AGG 0.525012 5:-30342408 MsG0580026081.01.T01:intron
ATATTTGGAAAAGTTACTAA+AGG 0.532245 5:-30341829 MsG0580026081.01.T01:CDS
AGGCATGACGATCCAGATAG+TGG 0.540549 5:-30341987 MsG0580026081.01.T01:CDS
GTCCGGGGTATTCTTTCCAT+GGG 0.540623 5:-30342412 MsG0580026081.01.T01:CDS
ATTCTACGTGCTTCTATTAG+GGG 0.561180 5:+30337681 None:intergenic
AGGATAGTGATGCGCTCCGT+TGG 0.567136 5:+30340101 None:intergenic
GCAACTACCTACCCGTAAAG+AGG 0.572784 5:-30341782 MsG0580026081.01.T01:CDS
CAGTACCCGAAAGAAATGAT+TGG 0.581364 5:+30342675 None:intergenic
AAGCACGTAGAATATGGAGT+TGG 0.583108 5:-30337671 MsG0580026081.01.T01:three_prime_UTR
ATTCTCCTCATCTTGATGGA+AGG 0.586554 5:-30341935 MsG0580026081.01.T01:intron
AAGATCTGCTCCCATGAATG+AGG 0.588977 5:-30342491 MsG0580026081.01.T01:CDS
TACCATAGTAATATGATGAG+AGG 0.590982 5:+30340081 None:intergenic
TAAGAAACCTAACCTTCCCA+TGG 0.596016 5:+30342396 None:intergenic
AATATTCCCTCTTTACGGGT+AGG 0.598674 5:+30341775 None:intergenic
CAAGTAGCAGATGTTGCGAA+TGG 0.600359 5:-30342514 MsG0580026081.01.T01:CDS
CAACTACCTACCCGTAAAGA+GGG 0.608010 5:-30341781 MsG0580026081.01.T01:CDS
TAAAGAGGGAATATTTGTCA+TGG 0.617230 5:-30341767 MsG0580026081.01.T01:CDS
ATCACTAAATTCACCAACAA+CGG 0.623219 5:+30342444 None:intergenic
GTTGCATTTGTTGTTAGACA+CGG 0.628421 5:-30337888 MsG0580026081.01.T01:CDS
CCTCACCTTCCATCAAGATG+AGG 0.661000 5:+30341930 None:intergenic
CATGACGATCCAGATAGTGG+TGG 0.663896 5:-30341984 MsG0580026081.01.T01:CDS
AGTGATGTCAAACATGTCCG+GGG 0.690622 5:-30342427 MsG0580026081.01.T01:CDS
TTCCCATGGAAAGAATACCC+CGG 0.703104 5:+30342410 None:intergenic
GCATTTGTTGTTAGACACGG+AGG 0.708853 5:-30337885 MsG0580026081.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCAAAATAATATAATATA+GGG - Chr5:30340543-30340562 MsG0580026081.01.T01:intron 10.0%
!! TATCCAAAATAATATAATAT+AGG - Chr5:30340542-30340561 MsG0580026081.01.T01:intron 10.0%
!!! AAGATAAAATATTTTGTTTT+TGG + Chr5:30340265-30340284 None:intergenic 10.0%
!! CTTTATAAAAATGTAACATA+TGG - Chr5:30340461-30340480 MsG0580026081.01.T01:intron 15.0%
!! TGATTATTTATAAAGTTGTT+TGG - Chr5:30337666-30337685 MsG0580026081.01.T01:three_prime_UTR 15.0%
!! TTAAATGAATTTACATTTCT+TGG - Chr5:30338609-30338628 MsG0580026081.01.T01:intron 15.0%
!!! AACAAAATATTTTATCTTTG+TGG - Chr5:30340267-30340286 MsG0580026081.01.T01:intron 15.0%
!!! CATATGTTACATTTTTATAA+AGG + Chr5:30340463-30340482 None:intergenic 15.0%
!!! GTTTCAAATTTTCAAAATAT+TGG + Chr5:30340403-30340422 None:intergenic 15.0%
!!! TAAATTCAAAATAAGTTGAA+TGG + Chr5:30338858-30338877 None:intergenic 15.0%
!!! TCTTATAATATTTTTGTACA+TGG - Chr5:30340610-30340629 MsG0580026081.01.T01:intron 15.0%
!! ACTACTTTGATACTATTTAA+TGG - Chr5:30338816-30338835 MsG0580026081.01.T01:intron 20.0%
!! AGTTTCAATTTAGTGTAATT+TGG - Chr5:30338911-30338930 MsG0580026081.01.T01:intron 20.0%
!! ATATATGCATTCAAATTCTA+AGG + Chr5:30338754-30338773 None:intergenic 20.0%
!! ATATCATATAGTATTTCTCT+TGG + Chr5:30342679-30342698 None:intergenic 20.0%
!! ATATTTGGAAAAGTTACTAA+AGG - Chr5:30338455-30338474 MsG0580026081.01.T01:intron 20.0%
!! ATCTCATTATTGTTCAAATT+TGG + Chr5:30342043-30342062 None:intergenic 20.0%
!! CTCAAATAAAAATACTATTG+GGG + Chr5:30340350-30340369 None:intergenic 20.0%
!! GCTCAAATAAAAATACTATT+GGG + Chr5:30340351-30340370 None:intergenic 20.0%
!! TAATATGTAGCTTAAATTGA+GGG - Chr5:30339756-30339775 MsG0580026081.01.T01:intron 20.0%
!! TATGTATAAAACATCCAATA+TGG + Chr5:30341304-30341323 None:intergenic 20.0%
!! TCTCATTATTGTTCAAATTT+GGG + Chr5:30342042-30342061 None:intergenic 20.0%
!! TGCTCAAATAAAAATACTAT+TGG + Chr5:30340352-30340371 None:intergenic 20.0%
!!! AAAGTTCGGAATTTTTAAAT+TGG - Chr5:30341738-30341757 MsG0580026081.01.T01:intron 20.0%
!!! AATAAGTTGAATGGTATTAT+AGG + Chr5:30338849-30338868 None:intergenic 20.0%
!!! AGGTTTTTTTGTTTTGTTTT+TGG - Chr5:30339568-30339587 MsG0580026081.01.T01:intron 20.0%
!!! ATAAGTTGAATGGTATTATA+GGG + Chr5:30338848-30338867 None:intergenic 20.0%
!!! ATATTTTAGACTACAAAAGT+TGG + Chr5:30338784-30338803 None:intergenic 20.0%
!!! CTTTTGATGAAAACAAAAAT+GGG + Chr5:30339414-30339433 None:intergenic 20.0%
!!! GTCCCTATATTATATTATTT+TGG + Chr5:30340548-30340567 None:intergenic 20.0%
!!! GTTTTAAGCTATTTTAAGAT+AGG - Chr5:30341387-30341406 MsG0580026081.01.T01:intron 20.0%
!!! TACTTGTGTCTATAATTTTA+AGG + Chr5:30339628-30339647 None:intergenic 20.0%
!!! TCATATGTTTTGTAACTTAT+TGG - Chr5:30339920-30339939 MsG0580026081.01.T01:intron 20.0%
!!! TCTTTTGATGAAAACAAAAA+TGG + Chr5:30339415-30339434 None:intergenic 20.0%
!!! TTACATTTTTATAAAGGTCT+TGG + Chr5:30340457-30340476 None:intergenic 20.0%
!!! TTTGGAATAACATTGTTTTT+AGG - Chr5:30339586-30339605 MsG0580026081.01.T01:intron 20.0%
!!! TTTTGTTTTCATCAAAAGAA+AGG - Chr5:30339416-30339435 MsG0580026081.01.T01:intron 20.0%
! AAATATAATGTGTTAACCAG+TGG + Chr5:30342556-30342575 None:intergenic 25.0%
! AAATTCCGAACTTTAATGAT+CGG + Chr5:30341732-30341751 None:intergenic 25.0%
! AACAAAGTTGTATTTGGAAA+TGG + Chr5:30341570-30341589 None:intergenic 25.0%
! AACAATGAATATATCGTGAA+CGG + Chr5:30341982-30342001 None:intergenic 25.0%
! AATGACTGAACATTAAATGA+AGG + Chr5:30338587-30338606 None:intergenic 25.0%
! AATTATGGAGATATTGAGTT+TGG - Chr5:30337515-30337534 MsG0580026081.01.T01:three_prime_UTR 25.0%
! ACTATAAACTCCAAACATTT+CGG - Chr5:30338379-30338398 MsG0580026081.01.T01:intron 25.0%
! ACTATATGATATCCAGATAT+TGG - Chr5:30342687-30342706 MsG0580026081.01.T01:CDS 25.0%
! ATAACACCAATCATTTCTTT+CGG - Chr5:30337603-30337622 MsG0580026081.01.T01:three_prime_UTR 25.0%
! ATCTAGTTATAATTTGGTTG+CGG - Chr5:30342174-30342193 MsG0580026081.01.T01:intron 25.0%
! ATGACTGAACATTAAATGAA+GGG + Chr5:30338586-30338605 None:intergenic 25.0%
! ATTATAGACACAAGTAGAAT+TGG - Chr5:30339632-30339651 MsG0580026081.01.T01:intron 25.0%
! GATACAATAAACCAAAATAC+CGG - Chr5:30340825-30340844 MsG0580026081.01.T01:intron 25.0%
! GTAATATGTAGCTTAAATTG+AGG - Chr5:30339755-30339774 MsG0580026081.01.T01:intron 25.0%
! TACTTATATTCAAGATCTGT+AGG - Chr5:30339017-30339036 MsG0580026081.01.T01:intron 25.0%
! TATGACTTATGTCTTGAATT+TGG + Chr5:30342511-30342530 None:intergenic 25.0%
! TCAAATCAGATGAAACTATA+GGG + Chr5:30340319-30340338 None:intergenic 25.0%
! TCATCTATATTAATAGACTC+TGG + Chr5:30341510-30341529 None:intergenic 25.0%
! TGATGAGAATAAAAGGTAAT+TGG + Chr5:30338886-30338905 None:intergenic 25.0%
! TTACAACAACCAAAACAAAT+TGG - Chr5:30340661-30340680 MsG0580026081.01.T01:intron 25.0%
! TTCAAATCAGATGAAACTAT+AGG + Chr5:30340320-30340339 None:intergenic 25.0%
! TTCAAATCCTTTCACTTAAT+TGG + Chr5:30340636-30340655 None:intergenic 25.0%
! TTGGCTATCTAGTTATAATT+TGG - Chr5:30342168-30342187 MsG0580026081.01.T01:intron 25.0%
! TTTGTCCATATAGTAAAAGA+AGG + Chr5:30342123-30342142 None:intergenic 25.0%
!! AAACATGTTACTAGGAATTT+TGG + Chr5:30340745-30340764 None:intergenic 25.0%
!! TGTTTTCAGTATGCAATATT+TGG - Chr5:30338440-30338459 MsG0580026081.01.T01:intron 25.0%
!! TTAATCTTTTATCATGTGCT+TGG - Chr5:30342097-30342116 MsG0580026081.01.T01:intron 25.0%
!! TTCATGGATTGATTTATAGT+TGG - Chr5:30340065-30340084 MsG0580026081.01.T01:intron 25.0%
!! TTTCTCTAAAAACAGACTTA+TGG + Chr5:30340241-30340260 None:intergenic 25.0%
!!! AAGCATTTGCTGTTAAAAAA+AGG - Chr5:30342286-30342305 MsG0580026081.01.T01:intron 25.0%
!!! CTTGTTTTGATGAGAATAAA+AGG + Chr5:30338893-30338912 None:intergenic 25.0%
!!! TTATCCATTCCAATTTGTTT+TGG + Chr5:30340673-30340692 None:intergenic 25.0%
!!! TTTTAGAAGAAGAAGAAGAA+AGG - Chr5:30339514-30339533 MsG0580026081.01.T01:intron 25.0%
!!! TTTTGGTTAATTCAATGCTT+AGG - Chr5:30337727-30337746 MsG0580026081.01.T01:intron 25.0%
AAAATCCCTATTGTGTAAGA+TGG - Chr5:30341631-30341650 MsG0580026081.01.T01:intron 30.0%
AAAGCTTGAATGAGATAAGA+GGG + Chr5:30339367-30339386 None:intergenic 30.0%
AAATCCCTATTGTGTAAGAT+GGG - Chr5:30341632-30341651 MsG0580026081.01.T01:intron 30.0%
AAGAACAAACTGCATTCATT+AGG + Chr5:30338275-30338294 None:intergenic 30.0%
AATTACAAGGGTTATGAAAG+TGG + Chr5:30339123-30339142 None:intergenic 30.0%
ACAACCAAAACAAATTGGAA+TGG - Chr5:30340666-30340685 MsG0580026081.01.T01:intron 30.0%
ACCTGTTACTCAAATAACTA+AGG + Chr5:30342076-30342095 None:intergenic 30.0%
ACTTTCATAACCCTTGTAAT+TGG - Chr5:30339122-30339141 MsG0580026081.01.T01:intron 30.0%
AGTCTAGAAAAATGCAGATT+TGG + Chr5:30341774-30341793 None:intergenic 30.0%
ATAATCTAACTCAAACAACC+TGG - Chr5:30341429-30341448 MsG0580026081.01.T01:intron 30.0%
ATATTCTACGTGCTTCTATT+AGG + Chr5:30342608-30342627 None:intergenic 30.0%
ATCAAAATTAAGCGACTAGT+AGG + Chr5:30338080-30338099 None:intergenic 30.0%
ATCACTAAATTCACCAACAA+CGG + Chr5:30337843-30337862 None:intergenic 30.0%
ATCCTCTCATCATATTACTA+TGG - Chr5:30340201-30340220 MsG0580026081.01.T01:intron 30.0%
ATTACAAGGGTTATGAAAGT+GGG + Chr5:30339122-30339141 None:intergenic 30.0%
ATTCAATGCTTAGGTAGATA+AGG - Chr5:30337736-30337755 MsG0580026081.01.T01:intron 30.0%
CAAGAACTCGAATAGAAATA+AGG + Chr5:30337936-30337955 None:intergenic 30.0%
CAATAGCAGCTCAATATAAA+AGG - Chr5:30342762-30342781 MsG0580026081.01.T01:CDS 30.0%
CATAAGAGATACTTGAAAGT+TGG + Chr5:30339954-30339973 None:intergenic 30.0%
CTCAAATACAAATCAACAGA+AGG - Chr5:30340803-30340822 MsG0580026081.01.T01:intron 30.0%
CTCAAGTTAGATTAGGTATA+TGG + Chr5:30341928-30341947 None:intergenic 30.0%
TAAAGAGGGAATATTTGTCA+TGG - Chr5:30338517-30338536 MsG0580026081.01.T01:intron 30.0%
TAACACCAATCATTTCTTTC+GGG - Chr5:30337604-30337623 MsG0580026081.01.T01:three_prime_UTR 30.0%
TACCATAGTAATATGATGAG+AGG + Chr5:30340206-30340225 None:intergenic 30.0%
TACTTATTAAACGATGTACC+AGG + Chr5:30339661-30339680 None:intergenic 30.0%
TATTCTACGTGCTTCTATTA+GGG + Chr5:30342607-30342626 None:intergenic 30.0%
TCCTTAGTTATTTGAGTAAC+AGG - Chr5:30342072-30342091 MsG0580026081.01.T01:intron 30.0%
TCGGTAAAAATCCAACAAAT+TGG - Chr5:30340504-30340523 MsG0580026081.01.T01:intron 30.0%
TCTAATGCTCAAGTTAGATT+AGG + Chr5:30341935-30341954 None:intergenic 30.0%
TCTAGTTATAATTTGGTTGC+GGG - Chr5:30342175-30342194 MsG0580026081.01.T01:intron 30.0%
TCTTAACAAACACCAATATC+TGG + Chr5:30342702-30342721 None:intergenic 30.0%
TGACAAATATTCCCTCTTTA+CGG + Chr5:30338517-30338536 None:intergenic 30.0%
TGACTGAACATTAAATGAAG+GGG + Chr5:30338585-30338604 None:intergenic 30.0%
TGCAACAGCAAGATTTAAAA+CGG + Chr5:30342382-30342401 None:intergenic 30.0%
TGCTTTGATTGTTTACTTTG+AGG - Chr5:30338658-30338677 MsG0580026081.01.T01:intron 30.0%
TGGAGAAAAACTCAATGTTA+TGG + Chr5:30339489-30339508 None:intergenic 30.0%
TGGTACATCGTTTAATAAGT+AGG - Chr5:30339660-30339679 MsG0580026081.01.T01:intron 30.0%
TGGTTGAAAACTAACACTAA+AGG + Chr5:30341218-30341237 None:intergenic 30.0%
TTATGGTGAGAAGAAAATTC+CGG + Chr5:30340847-30340866 None:intergenic 30.0%
TTCAATGCTTAGGTAGATAA+GGG - Chr5:30337737-30337756 MsG0580026081.01.T01:intron 30.0%
! AAAACAAAAATGGGTTTCGA+TGG + Chr5:30339405-30339424 None:intergenic 30.0%
! AAAATGTGGTCAACTGTTTT+GGG + Chr5:30337560-30337579 None:intergenic 30.0%
! AGAAGAAAATTCCGGTATTT+TGG + Chr5:30340839-30340858 None:intergenic 30.0%
! AGGTTGTTTGAGTTAGATTA+TGG + Chr5:30341430-30341449 None:intergenic 30.0%
! AGTTGGCATTGAACTAAAAA+TGG + Chr5:30339451-30339470 None:intergenic 30.0%
! ATTACTATATGAGCATTGCT+AGG + Chr5:30339740-30339759 None:intergenic 30.0%
! ATTTTGTCTCTCACTACTAA+AGG + Chr5:30341616-30341635 None:intergenic 30.0%
! CAAGAAAGATAAGATTTTCG+AGG + Chr5:30338546-30338565 None:intergenic 30.0%
! GTTGGCATTGAACTAAAAAT+GGG + Chr5:30339450-30339469 None:intergenic 30.0%
! TAATAGAAGCACGTAGAATA+TGG - Chr5:30342607-30342626 MsG0580026081.01.T01:intron 30.0%
! TCGCTCTGATTTTATATCAA+TGG + Chr5:30340570-30340589 None:intergenic 30.0%
! TGTGCTATGTCTTATTATAC+TGG + Chr5:30340893-30340912 None:intergenic 30.0%
! TTACTATATGAGCATTGCTA+GGG + Chr5:30339739-30339758 None:intergenic 30.0%
! TTGGATTTTTACCGACAATT+AGG + Chr5:30340499-30340518 None:intergenic 30.0%
! TTTCTTATGATGGTGATTGT+TGG - Chr5:30337904-30337923 MsG0580026081.01.T01:CDS 30.0%
! TTTGCTATGCTTTACATCAA+TGG + Chr5:30341193-30341212 None:intergenic 30.0%
!! ACATTTTGAAGAGAACATGA+AGG - Chr5:30340008-30340027 MsG0580026081.01.T01:intron 30.0%
!! CATTTTGAAGAGAACATGAA+GGG - Chr5:30340009-30340028 MsG0580026081.01.T01:intron 30.0%
!! CTTATTTCTATTCGAGTTCT+TGG - Chr5:30337934-30337953 MsG0580026081.01.T01:CDS 30.0%
!! CTTCTTCTTCTAAAACTCTA+TGG + Chr5:30339509-30339528 None:intergenic 30.0%
!! TCTGAAACTATTTTCACCTT+TGG - Chr5:30338229-30338248 MsG0580026081.01.T01:intron 30.0%
!! TCTGTTGATTTGTATTTGAG+TGG + Chr5:30340803-30340822 None:intergenic 30.0%
!!! GAATTTTTTTGGTTTGGTGT+TGG + Chr5:30341238-30341257 None:intergenic 30.0%
!!! TAGAAGCTGAGTTTTTAGTT+GGG + Chr5:30341129-30341148 None:intergenic 30.0%
!!! TTAGAAGCTGAGTTTTTAGT+TGG + Chr5:30341130-30341149 None:intergenic 30.0%
AACCAGTGGAACAAACAATA+TGG + Chr5:30342542-30342561 None:intergenic 35.0%
AAGAGATACTTGAAAGTTGG+AGG + Chr5:30339951-30339970 None:intergenic 35.0%
AAGTATCTTCCCTCTTATTC+AGG + Chr5:30339263-30339282 None:intergenic 35.0%
AATCAGAGCGAAACTAACTA+TGG - Chr5:30340579-30340598 MsG0580026081.01.T01:intron 35.0%
ACATTAAATGAAGGGGGAAA+AGG + Chr5:30338578-30338597 None:intergenic 35.0%
ACTCTCAAGTTCCAATTTGT+TGG + Chr5:30340518-30340537 None:intergenic 35.0%
ACTGATTAAGCACACCATAT+TGG - Chr5:30341287-30341306 MsG0580026081.01.T01:intron 35.0%
AGAAGAAAGGACAAACACAA+AGG - Chr5:30339527-30339546 MsG0580026081.01.T01:intron 35.0%
AGTATCTTCCCTCTTATTCA+GGG + Chr5:30339262-30339281 None:intergenic 35.0%
ATAAACTCCAAACATTTCGG+AGG - Chr5:30338382-30338401 MsG0580026081.01.T01:intron 35.0%
ATAGAATCCTCCGAAATGTT+TGG + Chr5:30338392-30338411 None:intergenic 35.0%
ATGAGGGGAAAAGATTAAAC+CGG + Chr5:30339151-30339170 None:intergenic 35.0%
ATTCTACGTGCTTCTATTAG+GGG + Chr5:30342606-30342625 None:intergenic 35.0%
CACAAGATCTTATGAAGTCT+TGG - Chr5:30339284-30339303 MsG0580026081.01.T01:intron 35.0%
CCAAAAAAATTCCTCTCCAA+AGG - Chr5:30341246-30341265 MsG0580026081.01.T01:intron 35.0%
CCAAAGATTCAAAACACTCT+AGG - Chr5:30341469-30341488 MsG0580026081.01.T01:intron 35.0%
CCAAATTGAAGCCTAATTGT+CGG - Chr5:30340485-30340504 MsG0580026081.01.T01:intron 35.0%
CCAACTCACAACAAAGATTT+CGG + Chr5:30342346-30342365 None:intergenic 35.0%
CTAGTTATAATTTGGTTGCG+GGG - Chr5:30342176-30342195 MsG0580026081.01.T01:intron 35.0%
CTTCTTTGTTCCTCATTCAT+GGG + Chr5:30337806-30337825 None:intergenic 35.0%
GAAAGCTTGAATGAGATAAG+AGG + Chr5:30339368-30339387 None:intergenic 35.0%
GAAGGTTAGGTTTCTTATGA+TGG - Chr5:30337894-30337913 MsG0580026081.01.T01:CDS 35.0%
GACAAATATTCCCTCTTTAC+GGG + Chr5:30338516-30338535 None:intergenic 35.0%
GACTGAACATTAAATGAAGG+GGG + Chr5:30338584-30338603 None:intergenic 35.0%
GATGGGAACAAAGTTGTATT+TGG + Chr5:30341576-30341595 None:intergenic 35.0%
GTGTGCTTAATCAGTAGTAA+TGG + Chr5:30341282-30341301 None:intergenic 35.0%
GTTGTATTTGGAAATGGCTA+TGG + Chr5:30341564-30341583 None:intergenic 35.0%
TAAGCTAAAGTTTGAAGAGC+CGG - Chr5:30342219-30342238 MsG0580026081.01.T01:intron 35.0%
TACATGGCCAATTAAGTGAA+AGG - Chr5:30340626-30340645 MsG0580026081.01.T01:intron 35.0%
TACCATATTGTTTGTTCCAC+TGG - Chr5:30342537-30342556 MsG0580026081.01.T01:CDS 35.0%
TACCTGTCTTTCAACTTCAA+TGG + Chr5:30342478-30342497 None:intergenic 35.0%
TAGTTATAATTTGGTTGCGG+GGG - Chr5:30342177-30342196 MsG0580026081.01.T01:intron 35.0%
TATACATACACCCAGAGAAA+GGG - Chr5:30341316-30341335 MsG0580026081.01.T01:intron 35.0%
TATGTAGCTTAAATTGAGGG+TGG - Chr5:30339759-30339778 MsG0580026081.01.T01:intron 35.0%
TATTTGGAAATGGCTATGGT+TGG + Chr5:30341560-30341579 None:intergenic 35.0%
TCAATGTTATGGCAATTGAC+AGG + Chr5:30339478-30339497 None:intergenic 35.0%
TCTTCTTTGTTCCTCATTCA+TGG + Chr5:30337807-30337826 None:intergenic 35.0%
TGCTTAATCAGTAGTAATGG+CGG + Chr5:30341279-30341298 None:intergenic 35.0%
TGTAGTTGCTATCTGTTTCA+TGG - Chr5:30340049-30340068 MsG0580026081.01.T01:intron 35.0%
TTAAGGTGTGTTTGCAAGTT+GGG + Chr5:30341078-30341097 None:intergenic 35.0%
TTAGTGATGTCAAACATGTC+CGG - Chr5:30337855-30337874 MsG0580026081.01.T01:CDS 35.0%
TTATACATACACCCAGAGAA+AGG - Chr5:30341315-30341334 MsG0580026081.01.T01:intron 35.0%
TTATGGGAGAAAGGAAAAAG+CGG - Chr5:30338723-30338742 MsG0580026081.01.T01:intron 35.0%
! AACCAAAAACTTGTTCCCTA+GGG - Chr5:30340930-30340949 MsG0580026081.01.T01:intron 35.0%
! ATGGTAGTGAGATTTGTAAC+AGG + Chr5:30339344-30339363 None:intergenic 35.0%
! CATGTTACTAGGAATTTTGG+TGG + Chr5:30340742-30340761 None:intergenic 35.0%
! GAAAATGTGGTCAACTGTTT+TGG + Chr5:30337561-30337580 None:intergenic 35.0%
! GCAACAGCAAGATTTAAAAC+GGG + Chr5:30342381-30342400 None:intergenic 35.0%
! TGAATGCAGTTTGTTCTTAC+AGG - Chr5:30338277-30338296 MsG0580026081.01.T01:intron 35.0%
! TGAGTGGTTTGTATTAGAGT+CGG + Chr5:30340787-30340806 None:intergenic 35.0%
! TGGTAGTGAGATTTGTAACA+GGG + Chr5:30339343-30339362 None:intergenic 35.0%
! TTTAAGGTGTGTTTGCAAGT+TGG + Chr5:30341079-30341098 None:intergenic 35.0%
! TTTGAGAAAGATGGTGATGA+GGG + Chr5:30339167-30339186 None:intergenic 35.0%
!! ACTACTAAAGGAGTTCTGAA+GGG + Chr5:30341604-30341623 None:intergenic 35.0%
!! ATTTTCAAGCTTGTGAGACT+TGG - Chr5:30337575-30337594 MsG0580026081.01.T01:three_prime_UTR 35.0%
!! CCTAGAGTGTTTTGAATCTT+TGG + Chr5:30341472-30341491 None:intergenic 35.0%
!! CTTGGCCTTCTTTTACTATA+TGG - Chr5:30342115-30342134 MsG0580026081.01.T01:intron 35.0%
!! GTTGCATTTGTTGTTAGACA+CGG - Chr5:30342396-30342415 MsG0580026081.01.T01:intron 35.0%
!! TTACTTTGAGGTGAAAGCAA+GGG - Chr5:30338670-30338689 MsG0580026081.01.T01:intron 35.0%
!! TTTACTTTGAGGTGAAAGCA+AGG - Chr5:30338669-30338688 MsG0580026081.01.T01:intron 35.0%
!! TTTTGTTGTCAGTGCAGTTA+TGG + Chr5:30340864-30340883 None:intergenic 35.0%
!!! AAGTTGGTTTTTGGAAGGTT+TGG - Chr5:30340962-30340981 MsG0580026081.01.T01:intron 35.0%
!!! ACTAGGAATTTTGGTGGATT+TGG + Chr5:30340736-30340755 None:intergenic 35.0%
!!! AGAAGCTGAGTTTTTAGTTG+GGG + Chr5:30341128-30341147 None:intergenic 35.0%
!!! AGTTGGTTTTTGGAAGGTTT+GGG - Chr5:30340963-30340982 MsG0580026081.01.T01:intron 35.0%
!!! ATCCTCTTTTTCAATGTTGC+TGG - Chr5:30338323-30338342 MsG0580026081.01.T01:intron 35.0%
!!! CCTTTGGAGAGGAATTTTTT+TGG + Chr5:30341249-30341268 None:intergenic 35.0%
!!! CTAGGAATTTTGGTGGATTT+GGG + Chr5:30340735-30340754 None:intergenic 35.0%
!!! GGAGAGGAATTTTTTTGGTT+TGG + Chr5:30341244-30341263 None:intergenic 35.0%
!!! TCCTCTTTTTCAATGTTGCT+GGG - Chr5:30338324-30338343 MsG0580026081.01.T01:intron 35.0%
!!! TGTGTTTGCAAGTTGGTTTT+TGG - Chr5:30340953-30340972 MsG0580026081.01.T01:intron 35.0%
!!! TTTGCAAGTTGGTTTTTGGA+AGG - Chr5:30340957-30340976 MsG0580026081.01.T01:intron 35.0%
AAACCGGTTGCCAATTACAA+GGG + Chr5:30339135-30339154 None:intergenic 40.0%
AAGAAAGCAAGTCACGATAG+TGG - Chr5:30342008-30342027 MsG0580026081.01.T01:intron 40.0%
AAGCACGTAGAATATGGAGT+TGG - Chr5:30342613-30342632 MsG0580026081.01.T01:intron 40.0%
AAGCTAAAGTTTGAAGAGCC+GGG - Chr5:30342220-30342239 MsG0580026081.01.T01:intron 40.0%
AATATTCCCTCTTTACGGGT+AGG + Chr5:30338512-30338531 None:intergenic 40.0%
ACTGAGACTCGTGTGTTTAT+GGG - Chr5:30338707-30338726 MsG0580026081.01.T01:intron 40.0%
AGCCATTGAAGTTGAAAGAC+AGG - Chr5:30342473-30342492 MsG0580026081.01.T01:CDS 40.0%
AGGAATGGTTCAACTCAAAG+CGG + Chr5:30341867-30341886 None:intergenic 40.0%
AGTTAGATTATGGCTTCCAC+GGG + Chr5:30341420-30341439 None:intergenic 40.0%
ATTCTCCTCATCTTGATGGA+AGG - Chr5:30338349-30338368 MsG0580026081.01.T01:intron 40.0%
ATTCTTTCCATGGGAAGGTT+AGG - Chr5:30337881-30337900 MsG0580026081.01.T01:CDS 40.0%
CAGTACCCGAAAGAAATGAT+TGG + Chr5:30337612-30337631 None:intergenic 40.0%
CATCACCATCTTTCTCAAAC+TGG - Chr5:30339168-30339187 MsG0580026081.01.T01:intron 40.0%
CCAACAATTGCTCAAACCAA+AGG + Chr5:30338248-30338267 None:intergenic 40.0%
CCGACAATTAGGCTTCAATT+TGG + Chr5:30340488-30340507 None:intergenic 40.0%
CTAGACTATCCGATCAAGAT+TGG - Chr5:30341787-30341806 MsG0580026081.01.T01:CDS 40.0%
CTGAGTGCAAACATGTTACT+AGG + Chr5:30340753-30340772 None:intergenic 40.0%
CTTGAATGAGATAAGAGGGA+TGG + Chr5:30339363-30339382 None:intergenic 40.0%
GAGTTAGATTATGGCTTCCA+CGG + Chr5:30341421-30341440 None:intergenic 40.0%
GATGATCTCTCAACCATTAC+CGG - Chr5:30341525-30341544 MsG0580026081.01.T01:intron 40.0%
GGAAATTCTCCTCATCTTGA+TGG - Chr5:30338345-30338364 MsG0580026081.01.T01:intron 40.0%
GGTATCCAGTTTGAGAAAGA+TGG + Chr5:30339176-30339195 None:intergenic 40.0%
GTATCTTCCCTCTTATTCAG+GGG + Chr5:30339261-30339280 None:intergenic 40.0%
GTCTCACAAGCTTGAAAATG+TGG + Chr5:30337574-30337593 None:intergenic 40.0%
GTGCTACAAGATTTCTCTGA+CGG + Chr5:30341686-30341705 None:intergenic 40.0%
GTGGCTTTCTAATGACTGTA+GGG - Chr5:30341839-30341858 MsG0580026081.01.T01:CDS 40.0%
GTTTCGATGGTTGAGTAAAC+AGG + Chr5:30339392-30339411 None:intergenic 40.0%
TAAACCGGTTGCCAATTACA+AGG + Chr5:30339136-30339155 None:intergenic 40.0%
TAACCCTTGTAATTGGCAAC+CGG - Chr5:30339129-30339148 MsG0580026081.01.T01:intron 40.0%
TAACTCAAACAACCTGGATG+AGG - Chr5:30341435-30341454 MsG0580026081.01.T01:intron 40.0%
TAAGAAACCTAACCTTCCCA+TGG + Chr5:30337891-30337910 None:intergenic 40.0%
TAGTGATGTCAAACATGTCC+GGG - Chr5:30337856-30337875 MsG0580026081.01.T01:CDS 40.0%
TATAACACACCATCTCGTCT+TGG - Chr5:30342149-30342168 MsG0580026081.01.T01:intron 40.0%
TATCTAGTCATTGATCTCCC+CGG + Chr5:30342241-30342260 None:intergenic 40.0%
TATGGGAGAAAGGAAAAAGC+GGG - Chr5:30338724-30338743 MsG0580026081.01.T01:intron 40.0%
TCCCAGCAACATTGAAAAAG+AGG + Chr5:30338328-30338347 None:intergenic 40.0%
TCCGAACTTTAATGATCGGA+CGG + Chr5:30341728-30341747 None:intergenic 40.0%
TGAGCCCATCTTACACAATA+GGG + Chr5:30341639-30341658 None:intergenic 40.0%
TGTGGCTTTCTAATGACTGT+AGG - Chr5:30341838-30341857 MsG0580026081.01.T01:CDS 40.0%
TTTGTATTAGAGTCGGTCAG+TGG + Chr5:30340780-30340799 None:intergenic 40.0%
! ATTCGCAACATCTGCTACTT+GGG + Chr5:30337771-30337790 None:intergenic 40.0%
! CAACCAAAAACTTGTTCCCT+AGG - Chr5:30340929-30340948 MsG0580026081.01.T01:intron 40.0%
! CACTACTAAAGGAGTTCTGA+AGG + Chr5:30341605-30341624 None:intergenic 40.0%
! CCGAAATCTTTGTTGTGAGT+TGG - Chr5:30342343-30342362 MsG0580026081.01.T01:intron 40.0%
! GCAGTGAAAGTGAATGGTTT+TGG - Chr5:30337710-30337729 MsG0580026081.01.T01:intron 40.0%
! GTTTGAGAAAGATGGTGATG+AGG + Chr5:30339168-30339187 None:intergenic 40.0%
! TTCGTTGAGCGAGTGTTATT+AGG - Chr5:30339696-30339715 MsG0580026081.01.T01:intron 40.0%
! TTGAGAAAGATGGTGATGAG+GGG + Chr5:30339166-30339185 None:intergenic 40.0%
!! CCTTTGGTTTGAGCAATTGT+TGG - Chr5:30338245-30338264 MsG0580026081.01.T01:intron 40.0%
!! GCTGTGTTGCTTGTTCTTTA+AGG + Chr5:30341095-30341114 None:intergenic 40.0%
!! TACTTTGAGGTGAAAGCAAG+GGG - Chr5:30338671-30338690 MsG0580026081.01.T01:intron 40.0%
!!! GAAGCTGAGTTTTTAGTTGG+GGG + Chr5:30341127-30341146 None:intergenic 40.0%
!!! TGAGTTTTTAGTTGGGGGAA+TGG + Chr5:30341122-30341141 None:intergenic 40.0%
AAAGAGGATCCACCACTATC+TGG + Chr5:30338312-30338331 None:intergenic 45.0%
AAGATCTGCTCCCATGAATG+AGG - Chr5:30337793-30337812 MsG0580026081.01.T01:intron 45.0%
AATGGTGCACTCACCCTTTA+CGG + Chr5:30341175-30341194 None:intergenic 45.0%
ACAAGATTTCTCTGACGGCA+GGG + Chr5:30341681-30341700 None:intergenic 45.0%
ACTAGATAGCCAAGACGAGA+TGG + Chr5:30342161-30342180 None:intergenic 45.0%
AGCTAAAGTTTGAAGAGCCG+GGG - Chr5:30342221-30342240 MsG0580026081.01.T01:intron 45.0%
AGTGATGTCAAACATGTCCG+GGG - Chr5:30337857-30337876 MsG0580026081.01.T01:CDS 45.0%
ATCGTGAACGGAAAAGCCAA+AGG + Chr5:30341970-30341989 None:intergenic 45.0%
ATGAGAGATGCTAGCGTCAA+CGG - Chr5:30339051-30339070 MsG0580026081.01.T01:intron 45.0%
CAACTACCTACCCGTAAAGA+GGG - Chr5:30338503-30338522 MsG0580026081.01.T01:intron 45.0%
CAACTTGCAAACACACCCTA+GGG + Chr5:30340948-30340967 None:intergenic 45.0%
CAAGTAGCAGATGTTGCGAA+TGG - Chr5:30337770-30337789 MsG0580026081.01.T01:intron 45.0%
CACAAGTAGAATTGGTCACC+TGG - Chr5:30339640-30339659 MsG0580026081.01.T01:intron 45.0%
CAGAGCAGTCCAATCTTGAT+CGG + Chr5:30341799-30341818 None:intergenic 45.0%
CAGGGATACTGTAGTGATTG+AGG + Chr5:30339325-30339344 None:intergenic 45.0%
CATTCGCAACATCTGCTACT+TGG + Chr5:30337772-30337791 None:intergenic 45.0%
CTATGGTTGGAGGTCTATAC+CGG + Chr5:30341547-30341566 None:intergenic 45.0%
CTCGTGTGTTTATGGGAGAA+AGG - Chr5:30338714-30338733 MsG0580026081.01.T01:intron 45.0%
CTGAGCCCATCTTACACAAT+AGG + Chr5:30341640-30341659 None:intergenic 45.0%
GAAGCTGAAAAGACCGTTGT+TGG - Chr5:30337827-30337846 MsG0580026081.01.T01:CDS 45.0%
GACTGAGACTCGTGTGTTTA+TGG - Chr5:30338706-30338725 MsG0580026081.01.T01:intron 45.0%
GCATATTCCACCCTTTCTCT+GGG + Chr5:30341329-30341348 None:intergenic 45.0%
GCCGTCCGATCATTAAAGTT+CGG - Chr5:30341724-30341743 MsG0580026081.01.T01:intron 45.0%
GCTGTTGCAGTGAAAGTGAA+TGG - Chr5:30337704-30337723 MsG0580026081.01.T01:intron 45.0%
GTCATTGTTAAGCCTCATCC+AGG + Chr5:30341450-30341469 None:intergenic 45.0%
GTTGAACCATTCCTTCACTC+CGG - Chr5:30341873-30341892 MsG0580026081.01.T01:intron 45.0%
TACAAGATTTCTCTGACGGC+AGG + Chr5:30341682-30341701 None:intergenic 45.0%
TAGAGCTATACCTACCCCTT+TGG - Chr5:30341951-30341970 MsG0580026081.01.T01:CDS 45.0%
TCGTGAACGGAAAAGCCAAA+GGG + Chr5:30341969-30341988 None:intergenic 45.0%
TGCATATTCCACCCTTTCTC+TGG + Chr5:30341330-30341349 None:intergenic 45.0%
TTCAAGCTTGTGAGACTTGG+AGG - Chr5:30337578-30337597 MsG0580026081.01.T01:three_prime_UTR 45.0%
TTCCCATGGAAAGAATACCC+CGG + Chr5:30337877-30337896 None:intergenic 45.0%
TTCCCTCTTATTCAGGGGAA+GGG + Chr5:30339256-30339275 None:intergenic 45.0%
TTGGAAATGGCTATGGTTGG+AGG + Chr5:30341557-30341576 None:intergenic 45.0%
TTGGAGGTCTATACCGGTAA+TGG + Chr5:30341541-30341560 None:intergenic 45.0%
! ACACACTGACTGTGTGAATG+TGG - Chr5:30341820-30341839 MsG0580026081.01.T01:CDS 45.0%
! AGGTGTTGTGGGGTAATTTG+TGG + Chr5:30339229-30339248 None:intergenic 45.0%
! CACCCTAGGGAACAAGTTTT+TGG + Chr5:30340935-30340954 None:intergenic 45.0%
! GGTGTTGTGGGGTAATTTGT+GGG + Chr5:30339228-30339247 None:intergenic 45.0%
! GTGTTGTGGGGTAATTTGTG+GGG + Chr5:30339227-30339246 None:intergenic 45.0%
! GTTTTCCCTTTTCCAGCCAA+CGG - Chr5:30340167-30340186 MsG0580026081.01.T01:intron 45.0%
! TAAGATGGGCTCAGTAGAAC+TGG - Chr5:30341646-30341665 MsG0580026081.01.T01:intron 45.0%
! TCAGTAGTAATGGCGGAGAT+CGG + Chr5:30341272-30341291 None:intergenic 45.0%
! TGTTGTGGGGTAATTTGTGG+GGG + Chr5:30339226-30339245 None:intergenic 45.0%
! TTATCCCCATCTGAGAGCAT+TGG + Chr5:30341364-30341383 None:intergenic 45.0%
!! ACTGTTTTGGGTGCAACAGT+TGG + Chr5:30337548-30337567 None:intergenic 45.0%
!! AGTTCTGAAGGGTGTGTGAT+GGG + Chr5:30341593-30341612 None:intergenic 45.0%
!! GCATTTGTTGTTAGACACGG+AGG - Chr5:30342399-30342418 MsG0580026081.01.T01:intron 45.0%
!! GGTTTTTGGAAGGTTTGGGA+GGG - Chr5:30340967-30340986 MsG0580026081.01.T01:intron 45.0%
!! GTTTTTGGAAGGTTTGGGAG+GGG - Chr5:30340968-30340987 MsG0580026081.01.T01:intron 45.0%
!! TATCCCCATCTGAGAGCATT+GGG + Chr5:30341363-30341382 None:intergenic 45.0%
!! TGGTTTTTGGAAGGTTTGGG+AGG - Chr5:30340966-30340985 MsG0580026081.01.T01:intron 45.0%
!! TTTTAGTTGGGGGAATGGCT+CGG + Chr5:30341117-30341136 None:intergenic 45.0%
AACGGAAAAGCCAAAGGGGT+AGG + Chr5:30341964-30341983 None:intergenic 50.0%
AACTCCCCAATGCTCTCAGA+TGG - Chr5:30341355-30341374 MsG0580026081.01.T01:intron 50.0%
ACATACACCCAGAGAAAGGG+TGG - Chr5:30341319-30341338 MsG0580026081.01.T01:intron 50.0%
ACTCCCCAATGCTCTCAGAT+GGG - Chr5:30341356-30341375 MsG0580026081.01.T01:intron 50.0%
AGGCATGACGATCCAGATAG+TGG - Chr5:30338297-30338316 MsG0580026081.01.T01:intron 50.0%
ATTGGCCCCTAACACAATGC+AGG + Chr5:30340385-30340404 None:intergenic 50.0%
ATTTGTGGGGGGTGAAGTTG+AGG + Chr5:30339214-30339233 None:intergenic 50.0%
CACCCTTCCCCTGAATAAGA+GGG - Chr5:30339251-30339270 MsG0580026081.01.T01:intron 50.0%
CCAACTTGCAAACACACCCT+AGG + Chr5:30340949-30340968 None:intergenic 50.0%
CCTAGGGTGTGTTTGCAAGT+TGG - Chr5:30340946-30340965 MsG0580026081.01.T01:intron 50.0%
CCTCACCTTCCATCAAGATG+AGG + Chr5:30338357-30338376 None:intergenic 50.0%
CCTCATCTTGATGGAAGGTG+AGG - Chr5:30338354-30338373 MsG0580026081.01.T01:intron 50.0%
CGTGAACGGAAAAGCCAAAG+GGG + Chr5:30341968-30341987 None:intergenic 50.0%
CTTCCCTCTTATTCAGGGGA+AGG + Chr5:30339257-30339276 None:intergenic 50.0%
GCAACTACCTACCCGTAAAG+AGG - Chr5:30338502-30338521 MsG0580026081.01.T01:intron 50.0%
GGAGATAGCTGTGACATGAG+CGG + Chr5:30341907-30341926 None:intergenic 50.0%
GTGGATTTGGGAGTCTCTAG+TGG + Chr5:30340723-30340742 None:intergenic 50.0%
TGCATACCGGAGTGAAGGAA+TGG + Chr5:30341882-30341901 None:intergenic 50.0%
TTGGCCCCTAACACAATGCA+GGG + Chr5:30340384-30340403 None:intergenic 50.0%
! AAAGTGGGTGTCGTGGCTTT+AGG + Chr5:30339107-30339126 None:intergenic 50.0%
! CATGACGATCCAGATAGTGG+TGG - Chr5:30338300-30338319 MsG0580026081.01.T01:intron 50.0%
! GGGGTATTCTTTCCATGGGA+AGG - Chr5:30337876-30337895 MsG0580026081.01.T01:CDS 50.0%
! GGTTATGAAAGTGGGTGTCG+TGG + Chr5:30339114-30339133 None:intergenic 50.0%
! GGTTTGGGAGGGGAAGATTT+TGG - Chr5:30340978-30340997 MsG0580026081.01.T01:intron 50.0%
! GTCCGGGGTATTCTTTCCAT+GGG - Chr5:30337872-30337891 MsG0580026081.01.T01:CDS 50.0%
! GTTGTGGGGTAATTTGTGGG+GGG + Chr5:30339225-30339244 None:intergenic 50.0%
! TGGGAGGGGAAGATTTTGGA+GGG - Chr5:30340982-30341001 MsG0580026081.01.T01:intron 50.0%
! TGTCCGGGGTATTCTTTCCA+TGG - Chr5:30337871-30337890 MsG0580026081.01.T01:CDS 50.0%
! TTATTCAGGGGAAGGGTGCA+AGG + Chr5:30339249-30339268 None:intergenic 50.0%
! TTGAGGAATGGTGGTGTCAG+TGG + Chr5:30339197-30339216 None:intergenic 50.0%
! TTGCTGCCAAGCACCGTAAA+GGG - Chr5:30341159-30341178 MsG0580026081.01.T01:intron 50.0%
! TTGGGAGGGGAAGATTTTGG+AGG - Chr5:30340981-30341000 MsG0580026081.01.T01:intron 50.0%
!! ATCCCCATCTGAGAGCATTG+GGG + Chr5:30341362-30341381 None:intergenic 50.0%
!! GAGTTCTGAAGGGTGTGTGA+TGG + Chr5:30341594-30341613 None:intergenic 50.0%
!! GGCTGCGTGACATTGCTTTT+AGG - Chr5:30339548-30339567 MsG0580026081.01.T01:intron 50.0%
!! GGTGTCGTGGCTTTAGGATT+GGG + Chr5:30339101-30339120 None:intergenic 50.0%
!! TCGGACGGCTCTGAAAATAC+TGG + Chr5:30341713-30341732 None:intergenic 50.0%
ACCCTGCCCTGCATTGTGTT+AGG - Chr5:30340375-30340394 MsG0580026081.01.T01:intron 55.0%
ACGGCTCATGCACTCTCTCT+TGG - Chr5:30339070-30339089 MsG0580026081.01.T01:intron 55.0%
AGGATAGTGATGCGCTCCGT+TGG + Chr5:30340186-30340205 None:intergenic 55.0%
ATTATGGCTTCCACGGGCAC+AGG + Chr5:30341414-30341433 None:intergenic 55.0%
CACTCACCCTTTACGGTGCT+TGG + Chr5:30341168-30341187 None:intergenic 55.0%
CCCTAACACAATGCAGGGCA+GGG + Chr5:30340379-30340398 None:intergenic 55.0%
CCCTGCCCTGCATTGTGTTA+GGG - Chr5:30340376-30340395 MsG0580026081.01.T01:intron 55.0%
CCTGCCCTGCATTGTGTTAG+GGG - Chr5:30340377-30340396 MsG0580026081.01.T01:intron 55.0%
CTCCCCAATGCTCTCAGATG+GGG - Chr5:30341357-30341376 MsG0580026081.01.T01:intron 55.0%
GACATGAGCGGTGTGCATAC+CGG + Chr5:30341895-30341914 None:intergenic 55.0%
GCACCCTTCCCCTGAATAAG+AGG - Chr5:30339250-30339269 MsG0580026081.01.T01:intron 55.0%
GGCAATTGACAGGCACGAGT+TGG + Chr5:30339468-30339487 None:intergenic 55.0%
GGGGTGAAGTTGAGGAATGG+TGG + Chr5:30339206-30339225 None:intergenic 55.0%
GTGAAAGCAAGGGGCAGAGA+TGG - Chr5:30338680-30338699 MsG0580026081.01.T01:intron 55.0%
TAAGATAGGACCTGTGCCCG+TGG - Chr5:30341401-30341420 MsG0580026081.01.T01:intron 55.0%
TCTCTGACGGCAGGGAATCT+TGG + Chr5:30341673-30341692 None:intergenic 55.0%
TGGGGGGTGAAGTTGAGGAA+TGG + Chr5:30339209-30339228 None:intergenic 55.0%
TTACGGTGCTTGGCAGCAAG+AGG + Chr5:30341158-30341177 None:intergenic 55.0%
! CTTGCTGCCAAGCACCGTAA+AGG - Chr5:30341158-30341177 MsG0580026081.01.T01:intron 55.0%
! TAATGGCGGAGATCGGCCTT+TGG + Chr5:30341265-30341284 None:intergenic 55.0%
!! GAAGGGTGCAAGGTGTTGTG+GGG + Chr5:30339239-30339258 None:intergenic 55.0%
!! GGAAGGGTGCAAGGTGTTGT+GGG + Chr5:30339240-30339259 None:intergenic 55.0%
!! GGGTGTCGTGGCTTTAGGAT+TGG + Chr5:30339102-30339121 None:intergenic 55.0%
CCCCTAACACAATGCAGGGC+AGG + Chr5:30340380-30340399 None:intergenic 60.0%
CGGTGTGCATACCGGAGTGA+AGG + Chr5:30341887-30341906 None:intergenic 60.0%
TAGTGATGCGCTCCGTTGGC+TGG + Chr5:30340182-30340201 None:intergenic 60.0%
! GCGCTCCGTTGGCTGGAAAA+GGG + Chr5:30340175-30340194 None:intergenic 60.0%
! TGCGCTCCGTTGGCTGGAAA+AGG + Chr5:30340176-30340195 None:intergenic 60.0%
!! GGGAAGGGTGCAAGGTGTTG+TGG + Chr5:30339241-30339260 None:intergenic 60.0%
! GCGGAGATCGGCCTTTGGAG+AGG + Chr5:30341260-30341279 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 30337506 30342800 30337506 ID=MsG0580026081.01;Name=MsG0580026081.01
Chr5 mRNA 30337506 30342800 30337506 ID=MsG0580026081.01.T01;Parent=MsG0580026081.01;Name=MsG0580026081.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.5|0.57|1|0.5|0.42|7|191|254
Chr5 exon 30337506 30337717 30337506 ID=MsG0580026081.01.T01:exon:33779;Parent=MsG0580026081.01.T01
Chr5 exon 30337812 30338048 30337812 ID=MsG0580026081.01.T01:exon:33778;Parent=MsG0580026081.01.T01
Chr5 exon 30340084 30340123 30340084 ID=MsG0580026081.01.T01:exon:33777;Parent=MsG0580026081.01.T01
Chr5 exon 30341742 30341867 30341742 ID=MsG0580026081.01.T01:exon:33776;Parent=MsG0580026081.01.T01
Chr5 exon 30341936 30342007 30341936 ID=MsG0580026081.01.T01:exon:33775;Parent=MsG0580026081.01.T01
Chr5 exon 30342409 30342557 30342409 ID=MsG0580026081.01.T01:exon:33774;Parent=MsG0580026081.01.T01
Chr5 exon 30342681 30342800 30342681 ID=MsG0580026081.01.T01:exon:33773;Parent=MsG0580026081.01.T01
Chr5 CDS 30342681 30342800 30342681 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 CDS 30342409 30342557 30342409 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 CDS 30341936 30342007 30341936 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 CDS 30341742 30341867 30341742 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 CDS 30340084 30340123 30340084 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 CDS 30337812 30338048 30337812 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 CDS 30337697 30337717 30337697 ID=MsG0580026081.01.T01:cds;Parent=MsG0580026081.01.T01
Chr5 three_prime_UTR 30337506 30337696 30337506 ID=MsG0580026081.01.T01:three_prime_utr;Parent=MsG0580026081.01.T01
Gene Sequence

>MsG0580026081.01.T01

ATGCAGACAAATTATGGAGATATTGAGTTTGGTTTCTATCCAACTGTTGCACCCAAAACAGTTGACCACATTTTCAAGCTTGTGAGACTTGGAGGCTATAACACCAATCATTTCTTTCGGGTAGATAAGGGATTTGTAGCCCAAGTAGCAGATGTTGCGAATGGAAGATCTGCTCCCATGAATGAGGAACAAAGAAGAGAAGCTGAAAAGACCGTTGTTGGTGAATTTAGTGATGTCAAACATGTCCGGGGTATTCTTTCCATGGGAAGGCATGACGATCCAGATAGTGGTGGATCCTCTTTTTCAATGTTGCTGGGAAATTCTCCTCATCTTGATGGAAGCTGTTTTCAGTATGCAATATTTGGAAAAGTTACTAAAGGTGACGATACATTGACAAAGCTTGAGCAACTACCTACCCGTAAAGAGGGAATATTTGTCATGGTATCCTCGAAAATCTTATCTTTCTTCCAACGGAGCGCATCACTATCCTCTCATCATATTACTATGATATCAATTTCTATTGAGATAACAACTAAAGCATTTGCTGTTAAAAAAAGGTTACATCGCGTTGTTTCTTTGTTCTTTTTCTTTACCGAAATCTTTGTTGTGAGTTGGTTTCTTTTGTTTCCCGTTTTAAATCTTGCTGTTGCATTTGTTGTTAGACACGGAGGCAGAAACTGTGAGCAAGAAAGATCAGTTTTGAAGCGTAGATTAGCTGCATCAGCCATTGAAGTTGAAAGACAGAGAATGAAATGCTTCCCCTAA

Protein sequence

>MsG0580026081.01.T01

MQTNYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVANGRSAPMNEEQRREAEKTVVGEFSDVKHVRGILSMGRHDDPDSGGSSFSMLLGNSPHLDGSCFQYAIFGKVTKGDDTLTKLEQLPTRKEGIFVMVSSKILSFFQRSASLSSHHITMISISIEITTKAFAVKKRLHRVVSLFFFFTEIFVVSWFLLFPVLNLAVAFVVRHGGRNCEQERSVLKRRLAASAIEVERQRMKCFP*