AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036703.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036703.01.T01 MTR_7g017400 98.402 438 7 0 1 438 1 438 0.0 894
MsG0780036703.01.T01 MTR_3g085160 31.176 340 210 13 90 416 42 370 2.36e-34 132
MsG0780036703.01.T01 MTR_3g085160 31.176 340 210 13 90 416 111 439 8.23e-34 132
MsG0780036703.01.T01 MTR_8g028250 31.014 345 199 14 97 413 43 376 7.84e-28 114
MsG0780036703.01.T01 MTR_4g094748 28.042 378 240 10 90 437 55 430 1.82e-26 111
MsG0780036703.01.T01 MTR_8g028220 27.824 363 219 15 72 413 31 371 1.08e-22 99.8
MsG0780036703.01.T01 MTR_1g033280 29.831 295 175 11 90 366 24 304 8.35e-19 88.2
MsG0780036703.01.T01 MTR_1g018140 25.490 357 236 9 82 414 5 355 2.41e-18 86.7
MsG0780036703.01.T01 MTR_1g033310 26.176 340 215 14 83 411 6 320 5.16e-18 85.5
MsG0780036703.01.T01 MTR_4g011090 20.833 360 239 14 94 419 1 348 7.99e-12 67.0
MsG0780036703.01.T01 MTR_2g033410 21.711 304 205 8 96 375 7 301 9.25e-12 66.6
MsG0780036703.01.T01 MTR_1g014700 30.405 148 94 3 98 241 22 164 4.01e-11 65.1
MsG0780036703.01.T01 MTR_3g007330 27.219 169 112 6 70 231 18 182 4.74e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036703.01.T01 AT5G15710 77.324 441 92 3 1 437 11 447 0.0 704
MsG0780036703.01.T01 AT5G15710 77.324 441 92 3 1 437 11 447 0.0 704
MsG0780036703.01.T01 AT1G30950 28.895 353 221 9 90 414 42 392 8.08e-33 129
MsG0780036703.01.T01 AT1G27340 28.866 291 184 10 89 367 111 390 1.01e-28 118
MsG0780036703.01.T01 AT3G61590 28.375 363 195 19 96 413 41 383 5.78e-23 100
MsG0780036703.01.T01 AT3G61590 28.375 363 195 19 96 413 49 391 6.41e-23 100
MsG0780036703.01.T01 AT3G61590 28.375 363 195 19 96 413 49 391 6.41e-23 100
MsG0780036703.01.T01 AT3G61590 28.375 363 195 19 96 413 77 419 1.62e-22 99.8
MsG0780036703.01.T01 AT5G43190 27.684 354 221 13 83 414 36 376 8.84e-16 79.3
MsG0780036703.01.T01 AT5G49610 22.654 309 206 10 90 375 1 299 7.50e-11 63.9

Find 99 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGGAAATCTTCTGAATT+AGG 0.184813 7:-12168158 MsG0780036703.01.T01:CDS
CTCTGCAGAGTATAAGAATT+TGG 0.204348 7:-12167137 MsG0780036703.01.T01:CDS
TTGGATGGTTATTTGGTTGC+TGG 0.283294 7:-12167207 MsG0780036703.01.T01:CDS
ATCTGGTTGGTTGGGTCATC+TGG 0.297316 7:-12167621 MsG0780036703.01.T01:CDS
ATCGTTGTTGGATGGTTATT+TGG 0.311690 7:-12167214 MsG0780036703.01.T01:CDS
AGATGGCGTATTGTGATTCT+AGG 0.329166 7:-12167326 MsG0780036703.01.T01:CDS
GAGATGGAATTCATTGCTTC+AGG 0.336339 7:-12167799 MsG0780036703.01.T01:CDS
GCTGAGAGATTTGAATGCTT+TGG 0.340080 7:-12167033 MsG0780036703.01.T01:CDS
CAATCTTTGTTCTTCAAAGA+TGG 0.350971 7:-12167343 MsG0780036703.01.T01:CDS
TCAACAAAGGCAACTGATAA+TGG 0.351016 7:-12167496 MsG0780036703.01.T01:CDS
GCTTCTCCTCCAAGGGGAAA+TGG 0.361590 7:-12168065 MsG0780036703.01.T01:CDS
TAAGTTCCCGCGATCGTTGT+TGG 0.370383 7:-12167226 MsG0780036703.01.T01:CDS
TTAGAGAAAATGGATTGTAT+AGG 0.382196 7:-12168176 None:intergenic
AACGATCGCGGGAACTTAGC+TGG 0.392059 7:+12167231 None:intergenic
ATGACTCAAAGGAAGATAAA+TGG 0.392122 7:-12167392 MsG0780036703.01.T01:CDS
CTTGATCCATTTCCCCTTGG+AGG 0.397956 7:+12168059 None:intergenic
CATTGGGCGATCTGGTTGGT+TGG 0.400587 7:-12167630 MsG0780036703.01.T01:CDS
TAGAGAAAATGGATTGTATA+GGG 0.406016 7:-12168175 None:intergenic
CATCTTTGAAGAACAAAGAT+TGG 0.407762 7:+12167344 None:intergenic
TCTGCAGAGTATAAGAATTT+GGG 0.413504 7:-12167136 MsG0780036703.01.T01:CDS
TGTTGATTAAAATGCATACT+TGG 0.416796 7:+12167513 None:intergenic
ATTGGGCGATCTGGTTGGTT+GGG 0.420582 7:-12167629 MsG0780036703.01.T01:CDS
TGTTTCACGTCTTATAATCA+AGG 0.424630 7:-12166994 MsG0780036703.01.T01:CDS
GACTATAAACAGAACATTGC+GGG 0.426071 7:+12167697 None:intergenic
GATCTCCACCCACGAAATCT+TGG 0.429451 7:+12167101 None:intergenic
TAGGGAAATCTTCTGAATTA+GGG 0.432644 7:-12168157 MsG0780036703.01.T01:CDS
GAGTATAAGAATTTGGGAAT+TGG 0.434419 7:-12167130 MsG0780036703.01.T01:CDS
GAAGAAACACATGCTACATT+TGG 0.435966 7:-12167948 MsG0780036703.01.T01:CDS
TTCAGATGGAGGATAACATA+TGG 0.436237 7:-12167905 MsG0780036703.01.T01:CDS
TTCCTCCATGTTTGTGTGAG+GGG 0.438416 7:+12167540 None:intergenic
TTGTGATTCTAGGTTGTACT+TGG 0.439967 7:-12167316 MsG0780036703.01.T01:CDS
TTGGAAACCCTTTCACCGCT+TGG 0.446761 7:-12167297 MsG0780036703.01.T01:CDS
GTCACTACATATATCATTAG+TGG 0.448781 7:+12167437 None:intergenic
TTCCTTGATCCATTTCCCCT+TGG 0.464201 7:+12168056 None:intergenic
CATTCGAGTGTTCCATCACA+TGG 0.466899 7:-12167756 MsG0780036703.01.T01:CDS
CAATGGGTCGCGTCGGGTCG+AGG 0.468949 7:-12168025 MsG0780036703.01.T01:CDS
GTTTCTTCATCTAAACCCCT+TGG 0.480699 7:+12167963 None:intergenic
TACGAGTCCTTCAAGGCAAA+AGG 0.487074 7:-12168000 MsG0780036703.01.T01:CDS
ATAGTCTGCCTCTTAAAACT+TGG 0.488276 7:-12167680 MsG0780036703.01.T01:CDS
TACTCTGCAGAGTGCTGTAA+AGG 0.489570 7:+12167148 None:intergenic
CATCAAACCAAGCGGTGAAA+GGG 0.490008 7:+12167290 None:intergenic
TTCGTTCGGTTTGTAAGAGA+TGG 0.495825 7:-12167815 MsG0780036703.01.T01:CDS
AAATCTTCTGAATTAGGGTC+TGG 0.498237 7:-12168152 MsG0780036703.01.T01:CDS
CTAGTCCAATGGGTCGCGTC+GGG 0.499895 7:-12168031 MsG0780036703.01.T01:CDS
TCATCAAACCAAGCGGTGAA+AGG 0.503280 7:+12167289 None:intergenic
TGGATCATGCCAAGATTTCG+TGG 0.511613 7:-12167110 MsG0780036703.01.T01:CDS
CAGACTAGATATAAATCGTT+GGG 0.512905 7:-12167262 MsG0780036703.01.T01:CDS
AAGATCTGGTCTTGGATTGG+TGG 0.513036 7:-12166943 MsG0780036703.01.T01:CDS
ATCTCATGCAACAAATCCTC+AGG 0.513038 7:+12167873 None:intergenic
TTTCCTCCATGTTTGTGTGA+GGG 0.518881 7:+12167539 None:intergenic
TTCCCGCGATCGTTGTTGGA+TGG 0.520784 7:-12167222 MsG0780036703.01.T01:CDS
TCAAGGAATACTAGTCCAAT+GGG 0.522157 7:-12168041 MsG0780036703.01.T01:CDS
TTTGAGTCATAAATTTCAGT+TGG 0.522803 7:+12167405 None:intergenic
CTCGACCCGACGCGACCCAT+TGG 0.525522 7:+12168026 None:intergenic
CGAGGAATACGAGTCCTTCA+AGG 0.527204 7:-12168007 MsG0780036703.01.T01:CDS
CTCCAAGGGGAAATGGATCA+AGG 0.529388 7:-12168058 MsG0780036703.01.T01:CDS
ACGTCTTATAATCAAGGGAA+AGG 0.534116 7:-12166988 MsG0780036703.01.T01:CDS
TTAGGGTCTGGTGTTAGTAT+TGG 0.537645 7:-12168140 MsG0780036703.01.T01:CDS
ATTTCCTCCATGTTTGTGTG+AGG 0.542612 7:+12167538 None:intergenic
GATAATGGTTGTTGATCGAT+CGG 0.546867 7:-12167481 MsG0780036703.01.T01:CDS
AAGCTTGTTTCTATGAGCCA+AGG 0.550821 7:-12166894 MsG0780036703.01.T01:CDS
TCAGATGGAGGATAACATAT+GGG 0.551921 7:-12167904 MsG0780036703.01.T01:CDS
GTATACAAGCTTCTCCTCCA+AGG 0.552869 7:-12168073 MsG0780036703.01.T01:CDS
GTTTCACGTCTTATAATCAA+GGG 0.552980 7:-12166993 MsG0780036703.01.T01:CDS
AGATCTGGTCTTGGATTGGT+GGG 0.553005 7:-12166942 MsG0780036703.01.T01:CDS
AACTGAAATTTATGACTCAA+AGG 0.554603 7:-12167403 MsG0780036703.01.T01:CDS
TGGTTGGTTGGGTCATCTGG+TGG 0.556014 7:-12167618 MsG0780036703.01.T01:CDS
ACAGACTAGATATAAATCGT+TGG 0.556572 7:-12167263 MsG0780036703.01.T01:CDS
AACCATCCAACAACGATCGC+GGG 0.557271 7:+12167220 None:intergenic
TGGAAGCCGGCATAGTCTGA+TGG 0.561952 7:+12167364 None:intergenic
ATCAAGGAATACTAGTCCAA+TGG 0.562043 7:-12168042 MsG0780036703.01.T01:CDS
TATACAAGCTTCTCCTCCAA+GGG 0.568208 7:-12168072 MsG0780036703.01.T01:CDS
ACTAGTCCAATGGGTCGCGT+CGG 0.570903 7:-12168032 MsG0780036703.01.T01:CDS
GCCGCATTGGGCGATCTGGT+TGG 0.576513 7:-12167634 MsG0780036703.01.T01:CDS
GAAGAACAAAGATTGGAAGC+CGG 0.577778 7:+12167351 None:intergenic
GGTTGTTAAGACTAAACCAA+GGG 0.578010 7:-12167979 MsG0780036703.01.T01:CDS
TAACCATCCAACAACGATCG+CGG 0.584243 7:+12167219 None:intergenic
GTCGGTCCATCAGACTATGC+CGG 0.584917 7:-12167370 MsG0780036703.01.T01:CDS
TAGATAGAAGCATCAAACCT+TGG 0.596404 7:+12166877 None:intergenic
TGGTTGCTGGTACCCAGAAG+CGG 0.597155 7:-12167194 MsG0780036703.01.T01:CDS
AGTTCATGCTGATATTCAGA+TGG 0.607798 7:-12167919 MsG0780036703.01.T01:CDS
AGAACACAAGGTCCATGTGA+TGG 0.607818 7:+12167744 None:intergenic
GGATCATGCCAAGATTTCGT+GGG 0.616043 7:-12167109 MsG0780036703.01.T01:CDS
TCATGCCAAGATTTCGTGGG+TGG 0.622823 7:-12167106 MsG0780036703.01.T01:CDS
GTAATCCCCTCACACAAACA+TGG 0.632072 7:-12167545 MsG0780036703.01.T01:CDS
TCATGCTGATATTCAGATGG+AGG 0.638526 7:-12167916 MsG0780036703.01.T01:CDS
CTCAAAGGAAGATAAATGGT+CGG 0.644756 7:-12167388 MsG0780036703.01.T01:CDS
TTACAGAAACTAAGAACACA+AGG 0.666240 7:+12167732 None:intergenic
CATATGGGCTATGTTGCCTG+AGG 0.667267 7:-12167889 MsG0780036703.01.T01:CDS
AGGTTGTTAAGACTAAACCA+AGG 0.680360 7:-12167980 MsG0780036703.01.T01:CDS
ACCAACCAGATCGCCCAATG+CGG 0.690988 7:+12167633 None:intergenic
CTGTACATCATCAAACCAAG+CGG 0.701884 7:+12167282 None:intergenic
GTTGTTAAGACTAAACCAAG+GGG 0.704700 7:-12167978 MsG0780036703.01.T01:CDS
AATAACGAACGAAAATACCT+CGG 0.706321 7:+12167066 None:intergenic
AGACTATAAACAGAACATTG+CGG 0.711279 7:+12167696 None:intergenic
ATACAAGCTTCTCCTCCAAG+GGG 0.713925 7:-12168071 MsG0780036703.01.T01:CDS
AGATCAGTAGAATGCCGCCG+AGG 0.728374 7:-12167083 MsG0780036703.01.T01:CDS
AACGAACGAAAATACCTCGG+CGG 0.730785 7:+12167069 None:intergenic
ATCCCCTCACACAAACATGG+AGG 0.738910 7:-12167542 MsG0780036703.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATCAACATCAAATAGA+AGG + Chr7:12168078-12168097 None:intergenic 20.0%
! AACTGAAATTTATGACTCAA+AGG - Chr7:12167637-12167656 MsG0780036703.01.T01:CDS 25.0%
! TTTGAGTCATAAATTTCAGT+TGG + Chr7:12167638-12167657 None:intergenic 25.0%
!! TGTTGATTAAAATGCATACT+TGG + Chr7:12167530-12167549 None:intergenic 25.0%
!! TTGATGTTGATAAAAAGATC+TGG - Chr7:12168083-12168102 MsG0780036703.01.T01:CDS 25.0%
!!! ATTCTATACCAAGTTTTAAG+AGG + Chr7:12167371-12167390 None:intergenic 25.0%
!!! GTATGCATTTTAATCAACAA+AGG - Chr7:12167531-12167550 MsG0780036703.01.T01:CDS 25.0%
AATAACGAACGAAAATACCT+CGG + Chr7:12167977-12167996 None:intergenic 30.0%
ACAGACTAGATATAAATCGT+TGG - Chr7:12167777-12167796 MsG0780036703.01.T01:CDS 30.0%
AGACTATAAACAGAACATTG+CGG + Chr7:12167347-12167366 None:intergenic 30.0%
ATAGGGAAATCTTCTGAATT+AGG - Chr7:12166882-12166901 MsG0780036703.01.T01:CDS 30.0%
ATGACTCAAAGGAAGATAAA+TGG - Chr7:12167648-12167667 MsG0780036703.01.T01:CDS 30.0%
CAATCTTTGTTCTTCAAAGA+TGG - Chr7:12167697-12167716 MsG0780036703.01.T01:CDS 30.0%
CAGACTAGATATAAATCGTT+GGG - Chr7:12167778-12167797 MsG0780036703.01.T01:CDS 30.0%
GAGTATAAGAATTTGGGAAT+TGG - Chr7:12167910-12167929 MsG0780036703.01.T01:CDS 30.0%
GTCACTACATATATCATTAG+TGG + Chr7:12167606-12167625 None:intergenic 30.0%
GTTTCACGTCTTATAATCAA+GGG - Chr7:12168047-12168066 MsG0780036703.01.T01:CDS 30.0%
TAGGGAAATCTTCTGAATTA+GGG - Chr7:12166883-12166902 MsG0780036703.01.T01:CDS 30.0%
TCTGCAGAGTATAAGAATTT+GGG - Chr7:12167904-12167923 MsG0780036703.01.T01:CDS 30.0%
TGTTTCACGTCTTATAATCA+AGG - Chr7:12168046-12168065 MsG0780036703.01.T01:CDS 30.0%
TTACAGAAACTAAGAACACA+AGG + Chr7:12167311-12167330 None:intergenic 30.0%
TTGATAAAAAGATCTGGTCT+TGG - Chr7:12168089-12168108 MsG0780036703.01.T01:CDS 30.0%
! CATCTTTGAAGAACAAAGAT+TGG + Chr7:12167699-12167718 None:intergenic 30.0%
! GCAGTAGAAAATGTAGTTTT+AGG - Chr7:12166927-12166946 MsG0780036703.01.T01:CDS 30.0%
!!! GTAGAAAATGTAGTTTTAGG+TGG - Chr7:12166930-12166949 MsG0780036703.01.T01:CDS 30.0%
AAATCTTCTGAATTAGGGTC+TGG - Chr7:12166888-12166907 MsG0780036703.01.T01:CDS 35.0%
ACGTCTTATAATCAAGGGAA+AGG - Chr7:12168052-12168071 MsG0780036703.01.T01:CDS 35.0%
AGGTTGTTAAGACTAAACCA+AGG - Chr7:12167060-12167079 MsG0780036703.01.T01:CDS 35.0%
AGTTCATGCTGATATTCAGA+TGG - Chr7:12167121-12167140 MsG0780036703.01.T01:CDS 35.0%
ATAGTCTGCCTCTTAAAACT+TGG - Chr7:12167360-12167379 MsG0780036703.01.T01:CDS 35.0%
ATCAAGGAATACTAGTCCAA+TGG - Chr7:12166998-12167017 MsG0780036703.01.T01:CDS 35.0%
ATCGTTGTTGGATGGTTATT+TGG - Chr7:12167826-12167845 MsG0780036703.01.T01:CDS 35.0%
CGAAGCCGAAAAATTAGAAA+CGG + Chr7:12167209-12167228 None:intergenic 35.0%
CTCAAAGGAAGATAAATGGT+CGG - Chr7:12167652-12167671 MsG0780036703.01.T01:CDS 35.0%
CTCTGCAGAGTATAAGAATT+TGG - Chr7:12167903-12167922 MsG0780036703.01.T01:CDS 35.0%
GAAGAAACACATGCTACATT+TGG - Chr7:12167092-12167111 MsG0780036703.01.T01:CDS 35.0%
GACTATAAACAGAACATTGC+GGG + Chr7:12167346-12167365 None:intergenic 35.0%
GGTTGTTAAGACTAAACCAA+GGG - Chr7:12167061-12167080 MsG0780036703.01.T01:CDS 35.0%
GTTGTTAAGACTAAACCAAG+GGG - Chr7:12167062-12167081 MsG0780036703.01.T01:CDS 35.0%
TCAACAAAGGCAACTGATAA+TGG - Chr7:12167544-12167563 MsG0780036703.01.T01:CDS 35.0%
TCAAGGAATACTAGTCCAAT+GGG - Chr7:12166999-12167018 MsG0780036703.01.T01:CDS 35.0%
TCAGATGGAGGATAACATAT+GGG - Chr7:12167136-12167155 MsG0780036703.01.T01:CDS 35.0%
TTCAGATGGAGGATAACATA+TGG - Chr7:12167135-12167154 MsG0780036703.01.T01:CDS 35.0%
TTGTGATTCTAGGTTGTACT+TGG - Chr7:12167724-12167743 MsG0780036703.01.T01:CDS 35.0%
! CTTTTTCTTGTTGGAAGGAT+TGG - Chr7:12167869-12167888 MsG0780036703.01.T01:CDS 35.0%
! GATAATGGTTGTTGATCGAT+CGG - Chr7:12167559-12167578 MsG0780036703.01.T01:CDS 35.0%
! TTAACAACCTTTTGCCTTGA+AGG + Chr7:12167050-12167069 None:intergenic 35.0%
! TTCCGCCGTTTCTAATTTTT+CGG - Chr7:12167201-12167220 MsG0780036703.01.T01:CDS 35.0%
! TTTCACATTTTTGCCGCATT+GGG - Chr7:12167394-12167413 MsG0780036703.01.T01:CDS 35.0%
!! AAAAAGATCTGGTCTTGGAT+TGG - Chr7:12168094-12168113 MsG0780036703.01.T01:CDS 35.0%
!! TAGATAGAAGCATCAAACCT+TGG + Chr7:12168166-12168185 None:intergenic 35.0%
!! TCTAATTTTTCGGCTTCGTT+CGG - Chr7:12167211-12167230 MsG0780036703.01.T01:CDS 35.0%
AACAAGAAAAAGCCGCTTCT+GGG + Chr7:12167861-12167880 None:intergenic 40.0%
AGATGGCGTATTGTGATTCT+AGG - Chr7:12167714-12167733 MsG0780036703.01.T01:CDS 40.0%
AGCCGAAAAATTAGAAACGG+CGG + Chr7:12167206-12167225 None:intergenic 40.0%
ATCTCATGCAACAAATCCTC+AGG + Chr7:12167170-12167189 None:intergenic 40.0%
ATTTCCTCCATGTTTGTGTG+AGG + Chr7:12167505-12167524 None:intergenic 40.0%
CTGTACATCATCAAACCAAG+CGG + Chr7:12167761-12167780 None:intergenic 40.0%
GAAGAACAAAGATTGGAAGC+CGG + Chr7:12167692-12167711 None:intergenic 40.0%
GAGATGGAATTCATTGCTTC+AGG - Chr7:12167241-12167260 MsG0780036703.01.T01:CDS 40.0%
GCTGAGAGATTTGAATGCTT+TGG - Chr7:12168007-12168026 MsG0780036703.01.T01:CDS 40.0%
GTTTCTTCATCTAAACCCCT+TGG + Chr7:12167080-12167099 None:intergenic 40.0%
TATACAAGCTTCTCCTCCAA+GGG - Chr7:12166968-12166987 MsG0780036703.01.T01:CDS 40.0%
TCATGCTGATATTCAGATGG+AGG - Chr7:12167124-12167143 MsG0780036703.01.T01:CDS 40.0%
TTGGATGGTTATTTGGTTGC+TGG - Chr7:12167833-12167852 MsG0780036703.01.T01:CDS 40.0%
TTTCCTCCATGTTTGTGTGA+GGG + Chr7:12167504-12167523 None:intergenic 40.0%
! GTTTCACATTTTTGCCGCAT+TGG - Chr7:12167393-12167412 MsG0780036703.01.T01:CDS 40.0%
! TTAGGGTCTGGTGTTAGTAT+TGG - Chr7:12166900-12166919 MsG0780036703.01.T01:CDS 40.0%
! TTCGTTCGGTTTGTAAGAGA+TGG - Chr7:12167225-12167244 MsG0780036703.01.T01:CDS 40.0%
!! AAGCTTGTTTCTATGAGCCA+AGG - Chr7:12168146-12168165 MsG0780036703.01.T01:CDS 40.0%
!!! GTGGTCTTGTTTGCTTTTCT+GGG - Chr7:12167441-12167460 MsG0780036703.01.T01:CDS 40.0%
AACGAACGAAAATACCTCGG+CGG + Chr7:12167974-12167993 None:intergenic 45.0%
AGAACACAAGGTCCATGTGA+TGG + Chr7:12167299-12167318 None:intergenic 45.0%
ATACAAGCTTCTCCTCCAAG+GGG - Chr7:12166969-12166988 MsG0780036703.01.T01:CDS 45.0%
CAACAAGAAAAAGCCGCTTC+TGG + Chr7:12167862-12167881 None:intergenic 45.0%
CATCAAACCAAGCGGTGAAA+GGG + Chr7:12167753-12167772 None:intergenic 45.0%
CATTCGAGTGTTCCATCACA+TGG - Chr7:12167284-12167303 MsG0780036703.01.T01:CDS 45.0%
GGATCATGCCAAGATTTCGT+GGG - Chr7:12167931-12167950 MsG0780036703.01.T01:CDS 45.0%
GTAATCCCCTCACACAAACA+TGG - Chr7:12167495-12167514 MsG0780036703.01.T01:CDS 45.0%
GTATACAAGCTTCTCCTCCA+AGG - Chr7:12166967-12166986 MsG0780036703.01.T01:CDS 45.0%
TAACCATCCAACAACGATCG+CGG + Chr7:12167824-12167843 None:intergenic 45.0%
TACGAGTCCTTCAAGGCAAA+AGG - Chr7:12167040-12167059 MsG0780036703.01.T01:CDS 45.0%
TCATCAAACCAAGCGGTGAA+AGG + Chr7:12167754-12167773 None:intergenic 45.0%
TGGATCATGCCAAGATTTCG+TGG - Chr7:12167930-12167949 MsG0780036703.01.T01:CDS 45.0%
TTCCTCCATGTTTGTGTGAG+GGG + Chr7:12167503-12167522 None:intergenic 45.0%
TTCCTTGATCCATTTCCCCT+TGG + Chr7:12166987-12167006 None:intergenic 45.0%
!! AAGATCTGGTCTTGGATTGG+TGG - Chr7:12168097-12168116 MsG0780036703.01.T01:CDS 45.0%
!! AGATCTGGTCTTGGATTGGT+GGG - Chr7:12168098-12168117 MsG0780036703.01.T01:CDS 45.0%
!! AGCGGCTTTTTCTTGTTGGA+AGG - Chr7:12167864-12167883 MsG0780036703.01.T01:CDS 45.0%
!! CAGAAGCGGCTTTTTCTTGT+TGG - Chr7:12167860-12167879 MsG0780036703.01.T01:CDS 45.0%
!! TACTCTGCAGAGTGCTGTAA+AGG + Chr7:12167895-12167914 None:intergenic 45.0%
!!! GGTGGTCTTGTTTGCTTTTC+TGG - Chr7:12167440-12167459 MsG0780036703.01.T01:CDS 45.0%
AACCATCCAACAACGATCGC+GGG + Chr7:12167823-12167842 None:intergenic 50.0%
ATCCCCTCACACAAACATGG+AGG - Chr7:12167498-12167517 MsG0780036703.01.T01:CDS 50.0%
CGAGGAATACGAGTCCTTCA+AGG - Chr7:12167033-12167052 MsG0780036703.01.T01:CDS 50.0%
CTCCAAGGGGAAATGGATCA+AGG - Chr7:12166982-12167001 MsG0780036703.01.T01:CDS 50.0%
CTTGATCCATTTCCCCTTGG+AGG + Chr7:12166984-12167003 None:intergenic 50.0%
GATCTCCACCCACGAAATCT+TGG + Chr7:12167942-12167961 None:intergenic 50.0%
TAAGTTCCCGCGATCGTTGT+TGG - Chr7:12167814-12167833 MsG0780036703.01.T01:CDS 50.0%
TCATGCCAAGATTTCGTGGG+TGG - Chr7:12167934-12167953 MsG0780036703.01.T01:CDS 50.0%
TTGGAAACCCTTTCACCGCT+TGG - Chr7:12167743-12167762 MsG0780036703.01.T01:CDS 50.0%
! ATCTGGTTGGTTGGGTCATC+TGG - Chr7:12167419-12167438 MsG0780036703.01.T01:CDS 50.0%
! ATTGGGCGATCTGGTTGGTT+GGG - Chr7:12167411-12167430 MsG0780036703.01.T01:CDS 50.0%
! CATATGGGCTATGTTGCCTG+AGG - Chr7:12167151-12167170 MsG0780036703.01.T01:CDS 50.0%
!! GTTTGCTTTTCTGGGTGCGA+AGG - Chr7:12167449-12167468 MsG0780036703.01.T01:CDS 50.0%
AACGATCGCGGGAACTTAGC+TGG + Chr7:12167812-12167831 None:intergenic 55.0%
ACCAACCAGATCGCCCAATG+CGG + Chr7:12167410-12167429 None:intergenic 55.0%
ACTAGTCCAATGGGTCGCGT+CGG - Chr7:12167008-12167027 MsG0780036703.01.T01:CDS 55.0%
AGATCAGTAGAATGCCGCCG+AGG - Chr7:12167957-12167976 MsG0780036703.01.T01:CDS 55.0%
CATTGGGCGATCTGGTTGGT+TGG - Chr7:12167410-12167429 MsG0780036703.01.T01:CDS 55.0%
GCTTCTCCTCCAAGGGGAAA+TGG - Chr7:12166975-12166994 MsG0780036703.01.T01:CDS 55.0%
GTCGGTCCATCAGACTATGC+CGG - Chr7:12167670-12167689 MsG0780036703.01.T01:CDS 55.0%
TGGAAGCCGGCATAGTCTGA+TGG + Chr7:12167679-12167698 None:intergenic 55.0%
TGGTTGCTGGTACCCAGAAG+CGG - Chr7:12167846-12167865 MsG0780036703.01.T01:CDS 55.0%
TTCCCGCGATCGTTGTTGGA+TGG - Chr7:12167818-12167837 MsG0780036703.01.T01:CDS 55.0%
! TGGTTGGTTGGGTCATCTGG+TGG - Chr7:12167422-12167441 MsG0780036703.01.T01:CDS 55.0%
! TTTTGCCGCATTGGGCGATC+TGG - Chr7:12167402-12167421 MsG0780036703.01.T01:CDS 55.0%
CTAGTCCAATGGGTCGCGTC+GGG - Chr7:12167009-12167028 MsG0780036703.01.T01:CDS 60.0%
GCCGCATTGGGCGATCTGGT+TGG - Chr7:12167406-12167425 MsG0780036703.01.T01:CDS 65.0%
CAATGGGTCGCGTCGGGTCG+AGG - Chr7:12167015-12167034 MsG0780036703.01.T01:CDS 70.0%
CTCGACCCGACGCGACCCAT+TGG + Chr7:12167017-12167036 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 12166873 12168189 12166873 ID=MsG0780036703.01;Name=MsG0780036703.01
Chr7 mRNA 12166873 12168189 12166873 ID=MsG0780036703.01.T01;Parent=MsG0780036703.01;Name=MsG0780036703.01.T01;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|438
Chr7 exon 12166873 12168189 12166873 ID=MsG0780036703.01.T01:exon:2505;Parent=MsG0780036703.01.T01
Chr7 CDS 12166873 12168189 12166873 ID=MsG0780036703.01.T01:cds;Parent=MsG0780036703.01.T01
Gene Sequence

>MsG0780036703.01.T01

ATGGATTGTATAGGGAAATCTTCTGAATTAGGGTCTGGTGTTAGTATTGGTGAAGCAGTAGAAAATGTAGTTTTAGGTGGTGATGTTAGATGTTGTATACAAGCTTCTCCTCCAAGGGGAAATGGATCAAGGAATACTAGTCCAATGGGTCGCGTCGGGTCGAGGAATACGAGTCCTTCAAGGCAAAAGGTTGTTAAGACTAAACCAAGGGGTTTAGATGAAGAAACACATGCTACATTTGGTAAAGTAGTTCATGCTGATATTCAGATGGAGGATAACATATGGGCTATGTTGCCTGAGGATTTGTTGCATGAGATCTTAGCTAGAGTTCCGCCGTTTCTAATTTTTCGGCTTCGTTCGGTTTGTAAGAGATGGAATTCATTGCTTCAGGATAGTAGTTTTCTTAAGTTTCATTCGAGTGTTCCATCACATGGACCTTGTGTTCTTAGTTTCTGTAAGAGCTCGTTGATCCCGCAATGTTCTGTTTATAGTCTGCCTCTTAAAACTTGGTATAGAATGTGTTTCACATTTTTGCCGCATTGGGCGATCTGGTTGGTTGGGTCATCTGGTGGTCTTGTTTGCTTTTCTGGGTGCGAAGGATCAGTTTTTTATATACTTGTTTGTAATCCCCTCACACAAACATGGAGGAAATTACCAAGTATGCATTTTAATCAACAAAGGCAACTGATAATGGTTGTTGATCGATCGGATCAGTCGTTTAAAGTGATAGCCACTAATGATATATGTAGTGACAAGTCATTGCCAACTGAAATTTATGACTCAAAGGAAGATAAATGGTCGGTCCATCAGACTATGCCGGCTTCCAATCTTTGTTCTTCAAAGATGGCGTATTGTGATTCTAGGTTGTACTTGGAAACCCTTTCACCGCTTGGTTTGATGATGTACAGACTAGATATAAATCGTTGGGAACATATTCCAGCTAAGTTCCCGCGATCGTTGTTGGATGGTTATTTGGTTGCTGGTACCCAGAAGCGGCTTTTTCTTGTTGGAAGGATTGGCCTTTACAGCACTCTGCAGAGTATAAGAATTTGGGAATTGGATCATGCCAAGATTTCGTGGGTGGAGATCAGTAGAATGCCGCCGAGGTATTTTCGTTCGTTATTGAGATTGTCAGCTGAGAGATTTGAATGCTTTGGACTTGATAACTTAATCTGTTTCACGTCTTATAATCAAGGGAAAGGCCTTCTATTTGATGTTGATAAAAAGATCTGGTCTTGGATTGGTGGGAGTGCTTTTCAGTCATACAACAATCAAGCTTGTTTCTATGAGCCAAGGTTTGATGCTTCTATCTACTAA

Protein sequence

>MsG0780036703.01.T01

MDCIGKSSELGSGVSIGEAVENVVLGGDVRCCIQASPPRGNGSRNTSPMGRVGSRNTSPSRQKVVKTKPRGLDEETHATFGKVVHADIQMEDNIWAMLPEDLLHEILARVPPFLIFRLRSVCKRWNSLLQDSSFLKFHSSVPSHGPCVLSFCKSSLIPQCSVYSLPLKTWYRMCFTFLPHWAIWLVGSSGGLVCFSGCEGSVFYILVCNPLTQTWRKLPSMHFNQQRQLIMVVDRSDQSFKVIATNDICSDKSLPTEIYDSKEDKWSVHQTMPASNLCSSKMAYCDSRLYLETLSPLGLMMYRLDINRWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSIRIWELDHAKISWVEISRMPPRYFRSLLRLSAERFECFGLDNLICFTSYNQGKGLLFDVDKKIWSWIGGSAFQSYNNQACFYEPRFDASIY*