AlfalfaGEDB | MsG0880042576.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042576.01

KEGG: -
GO: GO:0005515 GO:0007165 GO:0043531
PFAM: PF00931 PF01582

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042576.01.T01	XP_003627179.2	68.703	1195	317	16	8	1154	18	1203	0	1542

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042576.01.T01	V9M398	37.23	881	496	18	15	854	27	891	2.62E-146	477

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042576.01.T01	G7LIX4	68.703	1195	317	16	8	1154	18	1203	0.0	1542

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048515.01	MsG0880042576.01	0.806641	7.453146e-50	4.066176e-47
MsG0180000091.01	MsG0880042576.01	0.809435	1.895085e-50	1.112573e-47
MsG0180000599.01	MsG0880042576.01	0.804730	1.877053e-49	9.752175e-47
MsG0180000650.01	MsG0880042576.01	0.807034	6.156926e-50	3.393458e-47
MsG0180000652.01	MsG0880042576.01	0.805961	1.036760e-49	5.559355e-47
MsG0180000814.01	MsG0880042576.01	0.805445	1.330201e-49	7.038726e-47
MsG0180001088.01	MsG0880042576.01	0.803489	3.402894e-49	1.712286e-46
MsG0180003189.01	MsG0880042576.01	0.800149	1.650206e-48	7.627561e-46
MsG0180003357.01	MsG0880042576.01	0.810034	1.408468e-50	8.401166e-48
MsG0180004765.01	MsG0880042576.01	0.848293	6.721358e-60	1.227753e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880042576.01.T01	MTR_8g018480	68.703	1195	317	16	8	1154	18	1203	1542
MsG0880042576.01.T01	MTR_8g035990	67.893	1196	332	13	1	1154	5	1190	1537
MsG0880042576.01.T01	MTR_0363s0030	70.996	924	247	8	5	914	4	920	1256
MsG0880042576.01.T01	MTR_8g038815	70.996	924	247	8	5	914	4	920	1256
MsG0880042576.01.T01	MTR_8g016440	58.496	1130	330	18	13	1116	16	1032	1194
MsG0880042576.01.T01	MTR_8g076910	69.641	863	238	10	3	850	4	857	1126
MsG0880042576.01.T01	MTR_8g016440	71.046	784	205	8	13	782	16	791	1074
MsG0880042576.01.T01	MTR_8g433020	52.893	1210	451	29	12	1140	105	1276	1027
MsG0880042576.01.T01	MTR_8g032420	53.029	1205	457	28	12	1140	12	1183	1027
MsG0880042576.01.T01	MTR_8g032440	53.002	1166	485	23	12	1140	11	1150	1021

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042576.01.T01	AT5G17680	36.758	876	500	18	14	854	17	873	6.51e-158	504
MsG0880042576.01.T01	AT5G17680	36.644	876	500	19	14	854	17	872	1.76e-155	498
MsG0880042576.01.T01	AT5G49140	34.343	891	497	16	14	886	14	834	1.10e-144	461
MsG0880042576.01.T01	AT5G17970	37.676	783	431	18	15	758	16	780	2.06e-139	441
MsG0880042576.01.T01	AT5G41750	33.097	988	549	22	1	974	1	890	2.94e-139	449
MsG0880042576.01.T01	AT5G41750	33.097	988	549	22	1	974	1	890	2.94e-139	449
MsG0880042576.01.T01	AT5G41550	32.129	996	563	19	1	980	1	899	4.98e-139	449
MsG0880042576.01.T01	AT4G12010	32.112	1174	653	34	1	1065	1	1139	8.60e-139	451
MsG0880042576.01.T01	AT5G40910	34.896	917	508	22	1	910	1	835	7.45e-138	446
MsG0880042576.01.T01	AT5G40910	34.896	917	508	22	1	910	1	835	7.45e-138	446

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Find 205 sgRNAs with CRISPR-Local

Find 699 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTATGGTATGAAGG+TGG	0.625211	8:-10827276	None:intergenic
AAAACTTTGGAATGGAGAAT+TGG	0.359368	8:+10822064	MsG0880042576.01.T01:CDS
AAAATTGATGAATCAACTTC+AGG	0.409500	8:-10826562	None:intergenic
AAAATTTGAGATATCTTTCG+TGG	0.478606	8:+10821958	MsG0880042576.01.T01:CDS
AAACAGAAAAGAGTTGTGGA+AGG	0.628830	8:+10828938	MsG0880042576.01.T01:three_prime_UTR
AAAGATGCTATTGGTGCTAT+TGG	0.366461	8:+10827300	MsG0880042576.01.T01:CDS
AAAGCTTGAATATTTAAATG+TGG	0.592286	8:+10826594	MsG0880042576.01.T01:CDS
AAATATGGAAGTCTTCCACA+TGG	0.694806	8:+10821918	MsG0880042576.01.T01:CDS
AAATTAATAGGATACTGAGA+TGG	0.657262	8:+10821368	MsG0880042576.01.T01:CDS
AAATTTCAACCCGTTTGAGT+CGG	0.561576	8:-10827089	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATCAATCCAACTGGA+AGG	-	Chr8:10825357-10825376	None:intergenic	30.0%
AAAATGTGCCAAATACATGA+AGG	+	Chr8:10819703-10819722	MsG0880042576.01.T01:intron	30.0%
AAAGGGTCATAAACATTAAC+AGG	-	Chr8:10825574-10825593	None:intergenic	30.0%
AACTAAAATTGGGTGTAGAA+TGG	-	Chr8:10825239-10825258	None:intergenic	30.0%
AAGAAAATACATGTCTAGGA+GGG	-	Chr8:10821726-10821745	None:intergenic	30.0%
AAGGAAAAAACAAGAAGAAC+CGG	+	Chr8:10824763-10824782	MsG0880042576.01.T01:intron	30.0%
AATAAAACTTGATTCAGCAG+AGG	+	Chr8:10820724-10820743	MsG0880042576.01.T01:CDS	30.0%
AATCAATATCAGTCCTAAAG+AGG	+	Chr8:10820101-10820120	MsG0880042576.01.T01:intron	30.0%
AATTAGCATTCAATTCACTG+AGG	-	Chr8:10826669-10826688	None:intergenic	30.0%
ACAAATTTGCAAGCAGATAA+TGG	+	Chr8:10827638-10827657	MsG0880042576.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	10818853	10829101	10818853	ID=MsG0880042576.01;Name=MsG0880042576.01
Chr8	mRNA	10818853	10829101	10818853	ID=MsG0880042576.01.T01;Parent=MsG0880042576.01;Name=MsG0880042576.01.T01;_AED=0.24;_eAED=0.24;_QI=0\|0.4\|0.33\|1\|0.6\|0.5\|6\|332\|1154
Chr8	exon	10818853	10819322	10818853	ID=MsG0880042576.01.T01:exon:4433;Parent=MsG0880042576.01.T01
Chr8	exon	10820583	10821693	10820583	ID=MsG0880042576.01.T01:exon:4434;Parent=MsG0880042576.01.T01
Chr8	exon	10821801	10822085	10821801	ID=MsG0880042576.01.T01:exon:4435;Parent=MsG0880042576.01.T01
Chr8	exon	10826445	10827949	10826445	ID=MsG0880042576.01.T01:exon:4436;Parent=MsG0880042576.01.T01
Chr8	exon	10828040	10828181	10828040	ID=MsG0880042576.01.T01:exon:4437;Parent=MsG0880042576.01.T01
Chr8	exon	10828818	10829101	10828818	ID=MsG0880042576.01.T01:exon:4438;Parent=MsG0880042576.01.T01
Chr8	CDS	10818853	10819322	10818853	ID=MsG0880042576.01.T01:cds;Parent=MsG0880042576.01.T01
Chr8	CDS	10820583	10821693	10820583	ID=MsG0880042576.01.T01:cds;Parent=MsG0880042576.01.T01
Chr8	CDS	10821801	10822085	10821801	ID=MsG0880042576.01.T01:cds;Parent=MsG0880042576.01.T01
Chr8	CDS	10826445	10827949	10826445	ID=MsG0880042576.01.T01:cds;Parent=MsG0880042576.01.T01
Chr8	CDS	10828040	10828133	10828040	ID=MsG0880042576.01.T01:cds;Parent=MsG0880042576.01.T01
Chr8	three_prime_UTR	10828134	10828181	10828134	ID=MsG0880042576.01.T01:three_prime_utr;Parent=MsG0880042576.01.T01
Chr8	three_prime_UTR	10828818	10829101	10828818	ID=MsG0880042576.01.T01:three_prime_utr;Parent=MsG0880042576.01.T01

Gene Sequence

>MsG0880042576.01.T01

ATGGCTTCTTCTTCTTCCTCTCACGGTGCTTCTTTGAAGAAATATGATGTTTTCATCAGCTTTCGAGGAGAAGATACACGCACTGGTTTCATAAGCCATCTTTATAAAACTTTGTGTCAAAACCATATCCATACCTACATTGACAACTTGATCGAAAAAGGAGATCAAGTTTGGGCAGAGCTTGTGAAGGCAATCAAACAATCCACTTTGTTTCTTGTCGTGCTCTCAAAGAACTACGCGTCTTCAACATGGTGTTTGAACGAACTAGTTCAAATAATGGAATGCCACAAAAATGAACAAGTTGTTGTTTTTCCAGTGTTCTACCATGTTGACCCTTCACATGTGCGGAAACAAACAGGGAGTTACGGCACTGCCTTGGCAATACACAAGAACGACCATGAGATGCAAAAATGGAAGAATGCTCTTTTTGATGTAGCTAATTTATCTGGATTTCATTATACAACGTACAGGACTGAATATGACTTGATTGAAGCCATTGCCAGAGATGTATTAGGAAAATTAAATCACTGGTACACAAATGAAGATACAACTAGTTTCATACACGATGATAACGTCATACGCGATGAAAACTATTGGCGCATTCGGTCTTCAATAAAACTTGATTCAGCAGAGGTTCAAGTCATTGGACTTTGGGGCATGGGGGGCATGGGTAAGACAACCCTTGCTACAGATTTGTATAACAACGTCTCTTTTAAGTATGAAGGCAAATGCTTCTTAGAAGATGTGACAGAAGTATCAAAAAAGCATGGAATCAAATACACATTCAACATACTTCTTTCCAAGTTACTAAGGGAAGATCTTGATATTGACACTCCAAGAGTAACACCATCCATGATCAAGAAAAGACTCAAATTCATGAAAGCTTTCATTGTACTAGATGACGTACATACTTTAGAACTTCTGGAAGACTTGATTGGAGTGGGACATGGTTTGCTAGGAGCTGGTAGCACAGTCATTGTGACGACTAGGGATAGGGATGTGCTAATAAGTGGAGGAATTGATAACATTTATGAAGTTAAGAAGATGAACTCCCAAAATTCCCTCAAGCTTTTTTGCTTGAATGCTTTTGACACTCTCTTGCCTAAGGAGGGATTTGTGGAGCTCTCAAAAAGAGCAATTGATTACGCCAAAGGAAACCCTTTAGCTCTAAAAGTTTTGGGATCTTCTCTTCGTTGCAAAAGTGAAATAGAATGGAATTGTGCACTAGCTAAACTGAAGAAAATTTCCAATGCCAAAATTAATAGGATACTGAGATGGAGTTATGATGAATTGGATGAAAGCGAGAAAAATATATTTTTGGACATTGCATGCTTTTTCAAAGGAAGTAAAAGGGATAGGATAACAAAAATATTAAATGGTTGTGACTTCTTTGCTGATATAGGGATAAGTCATCTTTTAGACAAGGCTCTTATAAGAGTTGATTGTCAAAATCAAATACAAATGCATGACTTGATACAAGAAATGGGAAAACAAATTGTTCGTGAAGAATCTAAGTATCCCGGACAACGGAGTAGATTATGTGATCTCAAGGAAGTTTGTGATGTATTTAACAATAATAGAGGATCAGAGACTGTTGAAGCCATATTTTTAGATATTTCTGAATGTATGCATATAAATTTAAGACCCAACACATTTGAAAATATGGTAAATCTAAGGTTACTTCTTGTTCGAGGAATTAAATATGGAAGTCTTCCACATGGTCTTGACTTATTGCCAAAAAATTTGAGATATCTTTCGTGGGATGAATATCCATTGAAGTCTCTTCCACCAACCTTTTGTCCTGAAATGCTTGTGGAGCTTTGGCTGCCAGATAGTCATATGGTAAAACTTTGGAATGGAGAATTGAATTTGCCCAACTTAGAGTTAATTAACCTCCATGGCTCCAAAAAGCTGATAGAGTGTCCAAATGTGTCTGGTTCCCCCAATCTAAAATTTATAAGACTTGAAGGTTGTGAAAGCATGCCTGAAGTTGATTCATCAATTTTCCATCTCCAAAAGCTTGAATATTTAAATGTGGCTGGATGTACGTCACTTAAGAGCCTTTCCAGTAACACTTGTTCACCAGCCCTCAGTGAATTGAATGCTAATTCTTGCATCAACCTCAAAGAGATCTCAGTCCCATTTCCTTCCGTCAATGATGGGTTGGAGTTGCTTTTTACAGAGTGGGATGGGAATAAACTTCCATCATCAATATTGGATGCAAAAAATCTTAAAGGCTTGTACTTTCCTATCAGTGATTGTCTACTGGATCTTCCTGAAAACTTTTGCAGTTTTATTTGGCTTGTGGGTCCACGGAATTGTGACCCTTTCATCACCTTAGATAAATTATTTCGTAGTCCTGCCTTCCTGTGTGTAAAACACTTGTGCTTTTGTAATAATCCTATCTTCTTTGAAATCCCAGACAGTATCTCCTTACTGTCTTCATTAGAGCGTTTAACACTACAAAATATTGTCATTAAAAGCTTGCCTGAAACCATTAAGTATCTTCCCCGACTCAAACGGGTTGAAATTTACTATTGCGGAATGCTTCAATCTATTCCAGCGCTTTCGAAGTTCATTTCAAATTTGATTGTCTGGGATTGTGAATCTTTTGAGAAAATGCTGAGATCACCGGGTGAACCGTATGACAAACCCAATCTTTGTTTTTTTGTGCTCGTTAACTGCATGAAATTGGATCCACCTTCATACCATACAGTTTTGAAAGATGCTATTGGTGCTATTGGTGCTTCTTTATACGATGATATTATTTGGCACTTCTTACCTGCTTTGCCTGGCATGGAGGATTGGTTCCATTACCTTTCTACAGAAGTCTCTATAACTCTTGAGCTTCCTTCAAATTTGTTGGGTTTTGCCTACTACATGGTTCTTTCTCCAGGCCAAATGGAATTGAGTGCACGTTTTGGATGTGATTGCTATTTGGACAATAGTTCAGGTGAAAGGATCTGTATAACAAGTGTGACAAGAGACCACTTCATGTTTTGCTGGGAAGGAACTTCATTCCACATGACGTCGGATCATTTGGTTTTATGGTATGATCCACAAATTTGCAAGCAGATAATGGATGCAGTTGAACTGACAAAAGCCAATAGTGATGTGAACAGCACCAGTTACAATCCACAGTTTACATTTACATTCTTTATTGATGAAAATCTAGATGATGAAGTAGCCATAAAAGAGTGTGGGTTTCACTGGATACGTAAGGATGAAACAGTTCCTTCAACAATTTTTGAATGCCATGATGAAGAGATTGTGCCTTCATCAGATCGTCAATCCAATGAGCAAGAAGAAATAGTTTCTAAAACAAATTTTGAATCAGATGATCTAGAATTAGATGAAACACGTGATATGAGGTGTTCACTTGAAGAGCTCCTGCATATTGGATTTCGTGTAGACCACATGAACAACACTTGGTTTGGCTCTACAAAAGAAGAAAGCAACAGCTGA

Protein sequence

>MsG0880042576.01.T01

MASSSSSHGASLKKYDVFISFRGEDTRTGFISHLYKTLCQNHIHTYIDNLIEKGDQVWAELVKAIKQSTLFLVVLSKNYASSTWCLNELVQIMECHKNEQVVVFPVFYHVDPSHVRKQTGSYGTALAIHKNDHEMQKWKNALFDVANLSGFHYTTYRTEYDLIEAIARDVLGKLNHWYTNEDTTSFIHDDNVIRDENYWRIRSSIKLDSAEVQVIGLWGMGGMGKTTLATDLYNNVSFKYEGKCFLEDVTEVSKKHGIKYTFNILLSKLLREDLDIDTPRVTPSMIKKRLKFMKAFIVLDDVHTLELLEDLIGVGHGLLGAGSTVIVTTRDRDVLISGGIDNIYEVKKMNSQNSLKLFCLNAFDTLLPKEGFVELSKRAIDYAKGNPLALKVLGSSLRCKSEIEWNCALAKLKKISNAKINRILRWSYDELDESEKNIFLDIACFFKGSKRDRITKILNGCDFFADIGISHLLDKALIRVDCQNQIQMHDLIQEMGKQIVREESKYPGQRSRLCDLKEVCDVFNNNRGSETVEAIFLDISECMHINLRPNTFENMVNLRLLLVRGIKYGSLPHGLDLLPKNLRYLSWDEYPLKSLPPTFCPEMLVELWLPDSHMVKLWNGELNLPNLELINLHGSKKLIECPNVSGSPNLKFIRLEGCESMPEVDSSIFHLQKLEYLNVAGCTSLKSLSSNTCSPALSELNANSCINLKEISVPFPSVNDGLELLFTEWDGNKLPSSILDAKNLKGLYFPISDCLLDLPENFCSFIWLVGPRNCDPFITLDKLFRSPAFLCVKHLCFCNNPIFFEIPDSISLLSSLERLTLQNIVIKSLPETIKYLPRLKRVEIYYCGMLQSIPALSKFISNLIVWDCESFEKMLRSPGEPYDKPNLCFFVLVNCMKLDPPSYHTVLKDAIGAIGASLYDDIIWHFLPALPGMEDWFHYLSTEVSITLELPSNLLGFAYYMVLSPGQMELSARFGCDCYLDNSSGERICITSVTRDHFMFCWEGTSFHMTSDHLVLWYDPQICKQIMDAVELTKANSDVNSTSYNPQFTFTFFIDENLDDEVAIKECGFHWIRKDETVPSTIFECHDEEIVPSSDRQSNEQEEIVSKTNFESDDLELDETRDMRCSLEELLHIGFRVDHMNNTWFGSTKEESNS*