AlfalfaGEDB | MsG0880045711.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045711.01

KEGG: -
GO: GO:0003677
PFAM: PF00249

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045711.01.T01	XP_003629427.1	98.611	72	1	0	1	72	1	72	1.16E-45	150

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045711.01.T01	F4JVB8	66.154	65	21	1	5	68	14	78	1.38E-27	98.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045711.01.T01	G7LDY8	98.611	72	1	0	1	72	1	72	5.52e-46	150

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048528.01	MsG0880045711.01	0.833593	4.878799e-56	5.644538e-53
MsG0080048780.01	MsG0880045711.01	0.812966	3.249944e-51	2.095216e-48
MsG0080048845.01	MsG0880045711.01	0.838828	2.280866e-57	3.091477e-54
MsG0080049063.01	MsG0880045711.01	0.802217	6.229500e-49	3.034338e-46
MsG0080049130.01	MsG0880045711.01	0.827130	1.854010e-54	1.773792e-51
MsG0180000549.01	MsG0880045711.01	0.803436	3.490032e-49	1.753712e-46
MsG0180001175.01	MsG0880045711.01	0.817389	3.382482e-52	2.460084e-49
MsG0180001270.01	MsG0880045711.01	0.800639	1.311406e-48	6.137504e-46
MsG0180001371.01	MsG0880045711.01	0.824304	8.676995e-54	7.655717e-51
MsG0180001685.01	MsG0880045711.01	0.809043	2.298964e-50	1.335633e-47
MsG0180001929.01	MsG0880045711.01	0.800686	1.282627e-48	6.009912e-46
MsG0180002671.01	MsG0880045711.01	0.818957	1.494424e-52	1.134903e-49
MsG0880044228.01	MsG0880045711.01	0.824044	9.986956e-54	8.746948e-51
MsG0880045648.01	MsG0880045711.01	0.809496	1.838979e-50	1.081358e-47
MsG0880045709.01	MsG0880045711.01	0.831116	2.002918e-55	2.152765e-52
MsG0880045710.01	MsG0880045711.01	0.929092	1.139450e-92	6.244994e-88
MsG0880045711.01	MsG0880045712.01	0.875022	4.274070e-68	1.965960e-64
MsG0880045711.01	MsG0880045713.01	0.888377	6.232366e-73	4.817052e-69
MsG0880045711.01	MsG0880045714.01	0.885083	1.104042e-71	7.472850e-68
MsG0880045711.01	MsG0880046252.01	0.823680	1.216061e-53	1.054363e-50
MsG0880045711.01	MsG0880046764.01	0.800394	1.470927e-48	6.841489e-46
MsG0880045711.01	MsG0880046791.01	0.846375	2.260052e-59	3.882089e-56
MsG0880045711.01	MsG0880047567.01	0.804017	2.643739e-49	1.348479e-46
MsG0880045711.01	MsG0880047723.01	0.801243	9.871491e-49	4.691281e-46
MsG0180003531.01	MsG0880045711.01	0.803124	4.048099e-49	2.017887e-46
MsG0180004733.01	MsG0880045711.01	0.812125	4.962297e-51	3.128567e-48
MsG0180004735.01	MsG0880045711.01	0.822065	2.890509e-53	2.393574e-50
MsG0180005276.01	MsG0880045711.01	0.804011	2.650269e-49	1.351617e-46
MsG0180005492.01	MsG0880045711.01	0.800995	1.109556e-48	5.240339e-46
MsG0180005612.01	MsG0880045711.01	0.816473	5.430787e-52	3.851721e-49
MsG0180005755.01	MsG0880045711.01	0.814339	1.619865e-51	1.084032e-48
MsG0180005760.01	MsG0880045711.01	0.814111	1.819830e-51	1.210288e-48
MsG0180006223.01	MsG0880045711.01	0.800737	1.252179e-48	5.874901e-46
MsG0780040343.01	MsG0880045711.01	0.843624	1.249375e-58	1.966442e-55
MsG0780040825.01	MsG0880045711.01	-0.810427	1.158887e-50	6.983427e-48
MsG0780041159.01	MsG0880045711.01	0.812162	4.869274e-51	3.073126e-48
MsG0780041289.01	MsG0880045711.01	0.803432	3.496475e-49	1.756771e-46
MsG0780041706.01	MsG0880045711.01	0.834596	2.735140e-56	3.261288e-53
MsG0780041778.01	MsG0880045711.01	0.809597	1.748740e-50	1.031149e-47
MsG0880043249.01	MsG0880045711.01	0.815376	9.541883e-52	6.567410e-49
MsG0880043278.01	MsG0880045711.01	0.801550	8.542443e-49	4.090963e-46
MsG0380013530.01	MsG0880045711.01	0.847437	1.157366e-59	2.057056e-56
MsG0380014470.01	MsG0880045711.01	0.806767	7.009936e-50	3.836977e-47
MsG0380014909.01	MsG0880045711.01	0.809725	1.641685e-50	9.712982e-48
MsG0680030776.01	MsG0880045711.01	0.834536	2.832074e-56	3.370992e-53
MsG0680030858.01	MsG0880045711.01	0.808842	2.538882e-50	1.467041e-47
MsG0680030957.01	MsG0880045711.01	0.840570	8.028792e-58	1.148313e-54
MsG0680032006.01	MsG0880045711.01	0.802768	4.795801e-49	2.369158e-46
MsG0680032520.01	MsG0880045711.01	0.835310	1.807354e-56	2.201952e-53
MsG0680035619.01	MsG0880045711.01	0.811363	7.267067e-51	4.489331e-48
MsG0480018631.01	MsG0880045711.01	0.806981	6.316869e-50	3.476871e-47
MsG0480018644.01	MsG0880045711.01	0.802879	4.549071e-49	2.253542e-46
MsG0480019501.01	MsG0880045711.01	0.811999	5.286937e-51	3.321755e-48
MsG0480019971.01	MsG0880045711.01	0.812241	4.682061e-51	2.961233e-48
MsG0480020350.01	MsG0880045711.01	0.816991	4.155931e-52	2.989974e-49
MsG0480020753.01	MsG0880045711.01	0.814972	1.173331e-51	7.987165e-49
MsG0480020888.01	MsG0880045711.01	0.838959	2.109190e-57	2.870136e-54
MsG0480021168.01	MsG0880045711.01	0.821327	4.281905e-53	3.472945e-50
MsG0480021303.01	MsG0880045711.01	0.816805	4.575382e-52	3.274727e-49
MsG0480021377.01	MsG0880045711.01	0.806578	7.685124e-50	4.186140e-47
MsG0480021521.01	MsG0880045711.01	0.810446	1.147976e-50	6.921216e-48
MsG0480021597.01	MsG0880045711.01	0.803840	2.876735e-49	1.460685e-46
MsG0480021709.01	MsG0880045711.01	0.808653	2.786211e-50	1.601972e-47
MsG0480021777.01	MsG0880045711.01	0.803705	3.069273e-49	1.552921e-46
MsG0480021783.01	MsG0880045711.01	0.822551	2.229253e-53	1.872076e-50
MsG0480021795.01	MsG0880045711.01	0.810893	9.189894e-51	5.607557e-48
MsG0480023351.01	MsG0880045711.01	0.822412	2.402091e-53	2.009181e-50
MsG0480023845.01	MsG0880045711.01	0.819823	9.487447e-53	7.379868e-50
MsG0580024385.01	MsG0880045711.01	0.821285	4.378466e-53	3.546939e-50
MsG0580024759.01	MsG0880045711.01	0.803981	2.688742e-49	1.370225e-46
MsG0580024836.01	MsG0880045711.01	0.803773	2.970380e-49	1.505598e-46
MsG0580024944.01	MsG0880045711.01	0.845609	3.649606e-59	6.115292e-56
MsG0580024950.01	MsG0880045711.01	0.805899	1.068006e-49	5.717795e-47
MsG0580024976.01	MsG0880045711.01	-0.805846	1.096205e-49	5.860723e-47
MsG0580025589.01	MsG0880045711.01	0.811909	5.530733e-51	3.466355e-48
MsG0380015603.01	MsG0880045711.01	0.829668	4.525386e-55	4.663011e-52
MsG0380016452.01	MsG0880045711.01	0.802840	4.634089e-49	2.293516e-46
MsG0380016459.01	MsG0880045711.01	0.802949	4.400695e-49	2.183857e-46
MsG0380016836.01	MsG0880045711.01	0.809778	1.599360e-50	9.475898e-48
MsG0380017143.01	MsG0880045711.01	0.834786	2.450506e-56	2.938159e-53
MsG0380017976.01	MsG0880045711.01	0.809658	1.696825e-50	1.002161e-47
MsG0380018061.01	MsG0880045711.01	0.823027	1.727884e-53	1.470683e-50
MsG0580026211.01	MsG0880045711.01	0.800860	1.182187e-48	5.564021e-46
MsG0580027394.01	MsG0880045711.01	0.827465	1.541184e-54	1.489107e-51
MsG0580027410.01	MsG0880045711.01	0.801668	8.075660e-49	3.879108e-46
MsG0580027979.01	MsG0880045711.01	0.804637	1.963172e-49	1.017413e-46
MsG0580028306.01	MsG0880045711.01	0.824682	7.069661e-54	6.307176e-51
MsG0580029753.01	MsG0880045711.01	0.803639	3.167107e-49	1.599781e-46
MsG0580029967.01	MsG0880045711.01	0.816310	5.908484e-52	4.172259e-49
MsG0680030627.01	MsG0880045711.01	0.824318	8.615525e-54	7.604482e-51
MsG0280006607.01	MsG0880045711.01	0.800025	1.748975e-48	8.058654e-46
MsG0280006718.01	MsG0880045711.01	0.831126	1.991845e-55	2.141584e-52
MsG0280006805.01	MsG0880045711.01	0.813455	2.538099e-51	1.658346e-48
MsG0280006825.01	MsG0880045711.01	0.803027	4.239977e-49	2.108269e-46
MsG0280006848.01	MsG0880045711.01	0.807989	3.860813e-50	2.181554e-47
MsG0280007502.01	MsG0880045711.01	0.812124	4.964758e-51	3.130011e-48
MsG0280007628.01	MsG0880045711.01	0.802170	6.368762e-49	3.098512e-46
MsG0280007852.01	MsG0880045711.01	0.802471	5.522690e-49	2.707568e-46
MsG0280008227.01	MsG0880045711.01	0.809381	1.946170e-50	1.140964e-47
MsG0280008388.01	MsG0880045711.01	0.800103	1.686092e-48	7.784423e-46
MsG0280009430.01	MsG0880045711.01	0.806124	9.578550e-50	5.157574e-47
MsG0280009431.01	MsG0880045711.01	0.821455	4.001277e-53	3.256707e-50
MsG0280009756.01	MsG0880045711.01	0.820235	7.633868e-53	6.006314e-50
MsG0280010353.01	MsG0880045711.01	0.824091	9.736629e-54	8.539308e-51
MsG0280010376.01	MsG0880045711.01	0.821652	3.602170e-53	2.948260e-50
MsG0680035731.01	MsG0880045711.01	0.839212	1.814147e-57	2.487990e-54
MsG0680035791.01	MsG0880045711.01	0.813836	2.092103e-51	1.381037e-48
MsG0780037184.01	MsG0880045711.01	0.806883	6.625344e-50	3.637395e-47
MsG0780038616.01	MsG0880045711.01	0.816114	6.535024e-52	4.589821e-49
MsG0780039186.01	MsG0880045711.01	0.802695	4.964966e-49	2.448127e-46
MsG0780039675.01	MsG0880045711.01	0.805156	1.529164e-49	8.031834e-47
MsG0780039746.01	MsG0880045711.01	0.810310	1.228405e-50	7.379455e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045711.01.T01	MTR_8g077380	98.611	72	1	0	1	72	1	72	1.40e-49	150
MsG0880045711.01.T01	MTR_8g077390	98.611	72	1	0	1	72	1	72	1.40e-49	150
MsG0880045711.01.T01	MTR_8g077360	97.222	72	2	0	1	72	1	72	4.42e-49	149
MsG0880045711.01.T01	MTR_5g020540	82.258	62	11	0	3	64	2	63	1.40e-35	114
MsG0880045711.01.T01	MTR_8g077420	68.571	70	21	1	1	70	1	69	4.08e-32	106
MsG0880045711.01.T01	MTR_3g116720	64.615	65	22	1	5	68	16	80	1.48e-27	95.1
MsG0880045711.01.T01	MTR_1g022290	55.224	67	29	1	2	67	4	70	8.09e-26	91.3
MsG0880045711.01.T01	MTR_6g004250	57.576	66	27	1	2	66	7	72	3.59e-25	89.0
MsG0880045711.01.T01	MTR_5g020170	54.688	64	28	1	5	67	19	82	1.82e-24	87.8
MsG0880045711.01.T01	MTR_3g111880	55.072	69	30	1	2	69	4	72	8.41e-24	85.9
MsG0880045711.01.T01	MTR_3g013440	55.072	69	29	1	2	68	7	75	1.12e-22	83.2
MsG0880045711.01.T01	MTR_7g089210	59.016	61	24	1	8	67	15	75	5.14e-22	81.3
MsG0880045711.01.T01	MTR_5g069710	54.930	71	31	1	1	70	25	95	1.01e-20	82.8
MsG0880045711.01.T01	MTR_3g111920	52.174	69	32	1	4	71	2	70	6.67e-20	75.9
MsG0880045711.01.T01	MTR_3g462790	54.412	68	30	1	2	68	40	107	1.14e-19	80.1
MsG0880045711.01.T01	MTR_7g067080	51.429	70	33	1	2	70	32	101	9.42e-18	75.1
MsG0880045711.01.T01	MTR_8g063870	43.836	73	40	1	1	72	4	76	7.22e-17	72.0
MsG0880045711.01.T01	MTR_5g081860	50.769	65	31	1	3	66	25	89	6.80e-16	69.7
MsG0880045711.01.T01	MTR_1g033600	38.571	70	42	1	2	70	9	78	2.58e-15	65.9
MsG0880045711.01.T01	MTR_1g086180	47.143	70	35	1	3	70	9	78	4.35e-15	63.9
MsG0880045711.01.T01	MTR_7g110580	50.820	61	28	1	3	61	6	66	1.58e-14	62.4
MsG0880045711.01.T01	MTR_8g063600	39.130	69	41	1	5	72	10	78	2.89e-12	59.7
MsG0880045711.01.T01	MTR_1g111830	40.000	65	38	1	3	66	22	86	1.74e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045711.01.T01	AT4G39250	66.154	65	21	1	5	68	14	78	1.41e-28	98.2
MsG0880045711.01.T01	AT1G75250	62.687	67	24	1	3	68	10	76	4.76e-27	94.4
MsG0880045711.01.T01	AT1G75250	64.615	65	22	1	5	68	12	76	6.58e-27	94.7
MsG0880045711.01.T01	AT2G21650	56.522	69	29	1	5	72	14	82	8.40e-26	91.3
MsG0880045711.01.T01	AT1G19510	61.290	62	23	1	8	68	15	76	7.35e-24	86.3
MsG0880045711.01.T01	AT2G18328	55.385	65	27	2	8	71	14	77	1.04e-18	72.8
MsG0880045711.01.T01	AT2G38090	51.429	70	33	1	2	70	26	95	3.22e-18	76.3
MsG0880045711.01.T01	AT5G58900	52.174	69	32	1	2	69	31	99	1.33e-17	74.3
MsG0880045711.01.T01	AT4G36570	65.909	44	14	1	5	47	12	55	6.83e-16	65.1
MsG0880045711.01.T01	AT5G05790	45.714	70	37	1	2	70	28	97	9.26e-16	69.3
MsG0880045711.01.T01	AT5G05790	45.714	70	37	1	2	70	28	97	9.26e-16	69.3
MsG0880045711.01.T01	AT3G11280	49.206	63	31	1	5	66	33	95	2.42e-15	68.2
MsG0880045711.01.T01	AT3G11280	49.206	63	31	1	5	66	33	95	2.42e-15	68.2
MsG0880045711.01.T01	AT5G08520	47.826	69	35	1	5	72	12	80	3.62e-14	65.1
MsG0880045711.01.T01	AT5G04760	43.284	67	37	1	1	66	1	67	3.29e-13	61.6
MsG0880045711.01.T01	AT5G01200	45.070	71	37	2	4	72	29	99	1.61e-12	60.5
MsG0880045711.01.T01	AT1G49010	41.429	70	37	2	1	66	4	73	5.46e-12	59.3

Find 13 sgRNAs with CRISPR-Local

Find 14 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAACATTGTGCCATCTTTC+AGG	0.193556	8:-63107786	None:intergenic
TGTAACGAGGAAAAGGGATA+TGG	0.417505	8:-63107890	None:intergenic
TACGTTGAACATCTTCTTTG+AGG	0.435409	8:-63107857	None:intergenic
ATCAACAAATGGCAACCTCT+TGG	0.450563	8:+63107706	None:intergenic
CAAACTGTTTGAACAAGCAT+TGG	0.467435	8:+63107743	MsG0880045711.01.T01:CDS
CACAATGTTGCCAAAGTGGT+TGG	0.534351	8:+63107798	MsG0880045711.01.T01:CDS
TGGCAACCTCTTGGACTGCA+AGG	0.539984	8:+63107715	MsG0880045711.01.T01:CDS
ATAGAGAAACTCCTGAAAGA+TGG	0.546752	8:+63107775	MsG0880045711.01.T01:CDS
AAAACTAACACCAACTCCTA+AGG	0.547909	8:+63107912	MsG0880045711.01.T01:CDS
ATATATTATACCTTAGGAGT+TGG	0.560505	8:-63107922	None:intergenic
GTTCTGCCTTGCAGTCCAAG+AGG	0.596751	8:-63107721	None:intergenic
ATGGCACAATGTTGCCAAAG+TGG	0.642850	8:+63107794	MsG0880045711.01.T01:CDS
GATGTTCAACGTATTGAGCG+TGG	0.669371	8:+63107867	MsG0880045711.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAGTTTTGTAACGAGGAAAA+GGG	-	Chr8:63107899-63107918	None:intergenic	30.0%
!!!	TTAGTTTTGTAACGAGGAAA+AGG	-	Chr8:63107900-63107919	None:intergenic	30.0%
	ATAGAGAAACTCCTGAAAGA+TGG	+	Chr8:63107775-63107794	MsG0880045711.01.T01:CDS	35.0%
	CAAACTGTTTGAACAAGCAT+TGG	+	Chr8:63107743-63107762	MsG0880045711.01.T01:CDS	35.0%
	TACGTTGAACATCTTCTTTG+AGG	-	Chr8:63107860-63107879	None:intergenic	35.0%
!!	AACTGATTTTCCAACCACTT+TGG	-	Chr8:63107811-63107830	None:intergenic	35.0%
!!!	TTGGTGTTAGTTTTGTAACG+AGG	-	Chr8:63107906-63107925	None:intergenic	35.0%
	TGTAACGAGGAAAAGGGATA+TGG	-	Chr8:63107893-63107912	None:intergenic	40.0%
	ATGGCACAATGTTGCCAAAG+TGG	+	Chr8:63107794-63107813	MsG0880045711.01.T01:CDS	45.0%
	CACAATGTTGCCAAAGTGGT+TGG	+	Chr8:63107798-63107817	MsG0880045711.01.T01:CDS	45.0%
	GATGTTCAACGTATTGAGCG+TGG	+	Chr8:63107867-63107886	MsG0880045711.01.T01:CDS	45.0%
	GCAACATTGTGCCATCTTTC+AGG	-	Chr8:63107789-63107808	None:intergenic	45.0%
	GTTCTGCCTTGCAGTCCAAG+AGG	-	Chr8:63107724-63107743	None:intergenic	55.0%
	TGGCAACCTCTTGGACTGCA+AGG	+	Chr8:63107715-63107734	MsG0880045711.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	63107714	63107932	63107714	ID=MsG0880045711.01;Name=MsG0880045711.01
Chr8	mRNA	63107714	63107932	63107714	ID=MsG0880045711.01.T01;Parent=MsG0880045711.01;Name=MsG0880045711.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|72
Chr8	exon	63107714	63107932	63107714	ID=MsG0880045711.01.T01:exon:24111;Parent=MsG0880045711.01.T01
Chr8	CDS	63107714	63107932	63107714	ID=MsG0880045711.01.T01:cds;Parent=MsG0880045711.01.T01

Gene Sequence	>MsG0880045711.01.T01 ATGGCAACCTCTTGGACTGCAAGGCAGAACAAACTGTTTGAACAAGCATTGGCTTTATATGATAGAGAAACTCCTGAAAGATGGCACAATGTTGCCAAAGTGGTTGGAAAATCAGTTGAAGATGTTAAAAGTCACTATGAGATCCTCAAAGAAGATGTTCAACGTATTGAGCGTGGCCATATCCCTTTTCCTCGTTACAAAACTAACACCAACTCCTAA
Protein sequence	>MsG0880045711.01.T01 MATSWTARQNKLFEQALALYDRETPERWHNVAKVVGKSVEDVKSHYEILKEDVQRIERGHIPFPRYKTNTNS*