AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002671.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002671.01.T01 MTR_4g075040 91.525 118 10 0 143 260 215 332 1.13e-70 232
MsG0180002671.01.T01 MTR_1g052185 35.783 313 104 13 262 556 42 275 3.43e-25 105
MsG0180002671.01.T01 MTR_1g046810 33.036 336 117 14 262 560 50 314 2.00e-22 98.6
MsG0180002671.01.T01 MTR_1g053530 34.091 220 90 9 275 472 39 225 2.66e-19 88.2
MsG0180002671.01.T01 MTR_1g069610 46.610 118 29 3 48 132 319 435 8.16e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002671.01.T01 AT5G23120 85.593 118 17 0 143 260 222 339 1.87e-65 219
MsG0180002671.01.T01 AT5G23120 85.593 118 17 0 143 260 245 362 2.62e-65 219

Find 133 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCACCACTATCTTGTTTC+TGG 0.155464 1:-42778290 None:intergenic
ATCCTTCCCTGTCTCCTTCT+TGG 0.165343 1:+42778005 MsG0180002671.01.T01:CDS
AACATCATGTTTATGTTTCT+TGG 0.179200 1:-42777866 None:intergenic
TTTCAATAGGTTCTTGGTTT+AGG 0.233736 1:+42771791 MsG0180002671.01.T01:CDS
GGATCTTGGAGGCAAATATT+TGG 0.238581 1:-42778097 None:intergenic
TTCATTAATAGCATCATAAA+AGG 0.242863 1:-42772372 None:intergenic
TGGTGTCAGTGCTTTGATTT+GGG 0.268812 1:+42771870 MsG0180002671.01.T01:CDS
CTTTAACAGTTGGGTCCTAT+TGG 0.275046 1:+42772007 MsG0180002671.01.T01:CDS
TTAACCTTCACCTTGGTATC+TGG 0.276630 1:-42778426 None:intergenic
TCCCATGTTCTGGATTCTTC+TGG 0.285677 1:-42773267 None:intergenic
GTCTTGTTTCAATAGGTTCT+TGG 0.298780 1:+42771785 MsG0180002671.01.T01:CDS
GGTTGTTTGTTGTGTGTTGC+TGG 0.308749 1:+42771913 MsG0180002671.01.T01:CDS
CAGCTCTCCATCCCATGTTC+TGG 0.319178 1:-42773277 None:intergenic
GGATCCCTCTCGTCCTATAA+TGG 0.337100 1:+42772048 MsG0180002671.01.T01:CDS
TTGGTGTCAGTGCTTTGATT+TGG 0.341063 1:+42771869 MsG0180002671.01.T01:CDS
ATGATTATCATACACCTAAA+AGG 0.346201 1:+42778229 MsG0180002671.01.T01:CDS
ACAACATGTCTTGTTTCAAT+AGG 0.363125 1:+42771778 MsG0180002671.01.T01:CDS
TGTGTTTGGAATTCCATTAT+AGG 0.364251 1:-42772061 None:intergenic
GGAGAGCTGATGGTGGTCTC+TGG 0.387735 1:+42773291 MsG0180002671.01.T01:CDS
CACTACACCGTTTGAGATAA+GGG 0.388029 1:+42772219 MsG0180002671.01.T01:CDS
TAATAACACTAAGAAGAGTT+TGG 0.391524 1:+42778449 MsG0180002671.01.T01:CDS
TATGCTTTAGTGTTTGTGTT+TGG 0.410111 1:+42771850 MsG0180002671.01.T01:CDS
CTGCGATAACATATGAAGAT+AGG 0.415507 1:+42771980 MsG0180002671.01.T01:CDS
ACAGATAACTGAAGAATTTG+AGG 0.416527 1:+42774017 MsG0180002671.01.T01:intron
CATGACCTGGGAGCCTGGTC+AGG 0.417923 1:+42772633 MsG0180002671.01.T01:CDS
ATGTCTCGTGGTGGTGGTGC+TGG 0.426097 1:+42778201 MsG0180002671.01.T01:CDS
ATGTACTTGTAAGTTGTGTT+TGG 0.428021 1:-42772075 None:intergenic
AGGAAATTCCTGTTCAAAGC+CGG 0.433921 1:+42774037 MsG0180002671.01.T01:CDS
ATGAGATCGCACCGCGAAAA+GGG 0.435278 1:+42777952 MsG0180002671.01.T01:CDS
ATACCCTTCACCTTGGTCCC+TGG 0.436501 1:-42778324 None:intergenic
TTGGTTTGATGGGATCTTGG+AGG 0.442339 1:-42778108 None:intergenic
GGTTTGGCATTCTTGATGTC+GGG 0.443655 1:+42774061 MsG0180002671.01.T01:CDS
TTCTCCGCCCTTATCTCAAA+CGG 0.444688 1:-42772226 None:intergenic
TGTTATCTGTAGATAATGAA+TGG 0.448506 1:-42778491 None:intergenic
GTTATCTGTAGATAATGAAT+GGG 0.449333 1:-42778490 None:intergenic
ACAGTTTCTAGTGGTATTAG+TGG 0.451172 1:+42772523 MsG0180002671.01.T01:CDS
TTCTACATGACCTGGGAGCC+TGG 0.456770 1:+42772628 MsG0180002671.01.T01:CDS
GTGGCCGCCGAGTGCGGTGC+CGG 0.459893 1:-42777800 None:intergenic
GAATGCAGCACATATACTCT+TGG 0.463273 1:+42778176 MsG0180002671.01.T01:CDS
CATGAGATCGCACCGCGAAA+AGG 0.464656 1:+42777951 MsG0180002671.01.T01:CDS
TTCTGGAAGGTTCTGGAAGT+AGG 0.465281 1:+42772345 MsG0180002671.01.T01:intron
ATGATGTTCTTGATGATCAT+AGG 0.466009 1:+42777881 MsG0180002671.01.T01:CDS
GGTCTCTGGCTTCTTGTTCG+TGG 0.472681 1:+42773305 MsG0180002671.01.T01:CDS
GGGTTTGGCATTCTTGATGT+CGG 0.474242 1:+42774060 MsG0180002671.01.T01:CDS
TCTGGAAGGTTCTGGAAGTA+GGG 0.474258 1:+42772346 MsG0180002671.01.T01:intron
GATAGGCCTGCTTTAACAGT+TGG 0.476801 1:+42771997 MsG0180002671.01.T01:CDS
TGTTGTTCCAAGAAGGAGAC+AGG 0.479316 1:-42778012 None:intergenic
CTTGTTAATACCCTTCACCT+TGG 0.482866 1:-42778331 None:intergenic
ATCATCAATAAAATTCCAAT+AGG 0.482904 1:-42772022 None:intergenic
TTCACCTCCGGCACCGCACT+CGG 0.483750 1:+42777793 MsG0180002671.01.T01:CDS
ACACTACACCGTTTGAGATA+AGG 0.485214 1:+42772218 MsG0180002671.01.T01:CDS
TGCCACAGAATCTTCACCTC+CGG 0.493445 1:+42777781 MsG0180002671.01.T01:intron
GGAAATTCCTGTTCAAAGCC+GGG 0.494616 1:+42774038 MsG0180002671.01.T01:CDS
CCTCACCTGACCAGGCTCCC+AGG 0.496515 1:-42772638 None:intergenic
CTGGCAACTGCTCTGTTATG+TGG 0.499429 1:-42773248 None:intergenic
GAGACAGGGAAGGATGTGGT+TGG 0.500906 1:-42777997 None:intergenic
ATAGGCCTGCTTTAACAGTT+GGG 0.505770 1:+42771998 MsG0180002671.01.T01:CDS
TGTTTATGTTTCTTGGTCAG+AGG 0.507111 1:-42777859 None:intergenic
AAGGAGAGAACAGAGTCATA+AGG 0.512895 1:+42778596 MsG0180002671.01.T01:CDS
AGTGGTGCAAGCTATTACAC+TGG 0.515102 1:+42772541 MsG0180002671.01.T01:CDS
TTCGCGGTGCGATCTCATGT+TGG 0.528904 1:-42777947 None:intergenic
AGTAAAAGCCTCACCTGACC+AGG 0.530594 1:-42772646 None:intergenic
CGGTGCGATCTCATGTTGGA+TGG 0.532486 1:-42777943 None:intergenic
CCAGTGTCATTAGATGATGA+AGG 0.536889 1:-42778396 None:intergenic
TTGGATATGTCTCGTGGTGG+TGG 0.537951 1:+42778195 MsG0180002671.01.T01:CDS
CTCTTCAGAACAGTTTCTAG+TGG 0.545286 1:+42772514 MsG0180002671.01.T01:intron
ATCACTCTGTTGTTCCAAGA+AGG 0.546208 1:-42778019 None:intergenic
CAATGTCAATAGAGCCATGT+TGG 0.546859 1:-42778542 None:intergenic
AACATCCAGAAACAAGATAG+TGG 0.547833 1:+42778285 MsG0180002671.01.T01:CDS
TCTTGGTCAGAGGTTGAAGA+TGG 0.549872 1:-42777849 None:intergenic
CTTGATCAATTTCAAGTGGA+TGG 0.553394 1:+42778051 MsG0180002671.01.T01:CDS
TCATCTGCAACATCATCCAT+TGG 0.558057 1:-42778666 None:intergenic
GAAGAATCCAGAACATGGGA+TGG 0.558266 1:+42773270 MsG0180002671.01.T01:CDS
GTTATTATTAACCTTCACCT+TGG 0.558648 1:-42778433 None:intergenic
AGCGGTGGTGATGTGATTTG+TGG 0.559010 1:-42777819 None:intergenic
CCGCGAAAAGGGTTCTTCGA+AGG 0.559988 1:+42777963 MsG0180002671.01.T01:CDS
CGCGAAAAGGGTTCTTCGAA+GGG 0.564294 1:+42777964 MsG0180002671.01.T01:CDS
TATTTGGATAAGTCAATAGC+TGG 0.566230 1:-42778081 None:intergenic
GGGTGATGCTAATAATAGCA+AGG 0.566903 1:+42771891 MsG0180002671.01.T01:CDS
TGCCAGAAGAATCCAGAACA+TGG 0.568338 1:+42773265 MsG0180002671.01.T01:CDS
TGAAGGATCGGAAGGTGACT+CGG 0.573210 1:+42772194 MsG0180002671.01.T01:intron
AAGATCTTGCAGACATCAGA+AGG 0.575329 1:+42778513 MsG0180002671.01.T01:CDS
TGATTTGAATGAGCTTCCAA+TGG 0.575807 1:+42778650 MsG0180002671.01.T01:CDS
ACTGCAACATACCTTCCATC+GGG 0.579159 1:-42772589 None:intergenic
TGATCTTGATCAATTTCAAG+TGG 0.579257 1:+42778047 MsG0180002671.01.T01:CDS
TAGGACCCAACTGTTAAAGC+AGG 0.579635 1:-42772003 None:intergenic
GCGGAGAAAGCATTGAATAG+AGG 0.583106 1:+42772241 MsG0180002671.01.T01:CDS
GTGGCAACTTCTACATGACC+TGG 0.584090 1:+42772620 MsG0180002671.01.T01:CDS
GACTGCAACATACCTTCCAT+CGG 0.584903 1:-42772590 None:intergenic
GAAGGAGACAGGGAAGGATG+TGG 0.587926 1:-42778001 None:intergenic
CTCTGGCTTCTTGTTCGTGG+AGG 0.590994 1:+42773308 MsG0180002671.01.T01:CDS
AAAATGATGAAGGTGAAACA+AGG 0.592418 1:+42778577 MsG0180002671.01.T01:CDS
AACACCAGGGACCAAGGTGA+AGG 0.592734 1:+42778320 MsG0180002671.01.T01:CDS
ACGAACTGTGTCACTATGCA+AGG 0.595817 1:+42771754 None:intergenic
TCAGAAGGTTGCAGCCAACA+TGG 0.601987 1:+42778528 MsG0180002671.01.T01:CDS
GGTGACATTGATGAAACACC+AGG 0.602737 1:+42778306 MsG0180002671.01.T01:CDS
GAATTCCATTATAGGACGAG+AGG 0.602842 1:-42772053 None:intergenic
GGTGTCAGTGCTTTGATTTG+GGG 0.602858 1:+42771871 MsG0180002671.01.T01:CDS
GAAATTCCTGTTCAAAGCCG+GGG 0.606014 1:+42774039 MsG0180002671.01.T01:CDS
CATCAAGAATGCCAAACCCC+CGG 0.606370 1:-42774056 None:intergenic
GGAAGGTTCTGGAAGTAGGG+TGG 0.606868 1:+42772349 MsG0180002671.01.T01:intron
TCAATCGATCTCCCGATGGA+AGG 0.610839 1:+42772578 MsG0180002671.01.T01:CDS
TGATTTGTGGCCGCCGAGTG+CGG 0.612098 1:-42777806 None:intergenic
TGATGAAACACCAGGGACCA+AGG 0.613887 1:+42778314 MsG0180002671.01.T01:CDS
GAATAACAGAGAAAAGAGCT+TGG 0.618612 1:+42778353 MsG0180002671.01.T01:CDS
CCTTCATCATCTAATGACAC+TGG 0.627458 1:+42778396 MsG0180002671.01.T01:CDS
AATTCCATTATAGGACGAGA+GGG 0.627489 1:-42772052 None:intergenic
AACATGGGATGGAGAGCTGA+TGG 0.634621 1:+42773281 MsG0180002671.01.T01:CDS
ACACCAGGGACCAAGGTGAA+GGG 0.635686 1:+42778321 MsG0180002671.01.T01:CDS
GCCAGAAGAATCCAGAACAT+GGG 0.641481 1:+42773266 MsG0180002671.01.T01:CDS
AGGTCATGTAGAAGTTGCCA+CGG 0.643318 1:-42772618 None:intergenic
AAATTCCTGTTCAAAGCCGG+GGG 0.646079 1:+42774040 MsG0180002671.01.T01:CDS
ACTGGTAGTGAAGGATCGGA+AGG 0.646551 1:+42772186 MsG0180002671.01.T01:intron
GCCGCCGAGTGCGGTGCCGG+AGG 0.652014 1:-42777797 None:intergenic
TTCCAAGAAGGAGACAGGGA+AGG 0.652422 1:-42778007 None:intergenic
CTCTTGGATATGTCTCGTGG+TGG 0.652829 1:+42778192 MsG0180002671.01.T01:CDS
TGGCAACTTCTACATGACCT+GGG 0.659223 1:+42772621 MsG0180002671.01.T01:CDS
ATACTCTTGGATATGTCTCG+TGG 0.660709 1:+42778189 MsG0180002671.01.T01:CDS
AACACCAGATACCAAGGTGA+AGG 0.661758 1:+42778422 MsG0180002671.01.T01:CDS
GGTGATGCTAATAATAGCAA+GGG 0.662925 1:+42771892 MsG0180002671.01.T01:CDS
TATGTTGCAGTCTCAAGCCG+TGG 0.664230 1:+42772601 MsG0180002671.01.T01:CDS
TTGGATAAGTCAATAGCTGG+TGG 0.669288 1:-42778078 None:intergenic
TGGTGAAACACCAGATACCA+AGG 0.670792 1:+42778416 MsG0180002671.01.T01:CDS
ACTGTCAATCGATCTCCCGA+TGG 0.671901 1:+42772574 MsG0180002671.01.T01:CDS
TTATCTGTAGATAATGAATG+GGG 0.673990 1:-42778489 None:intergenic
GTTGTTCCAAGAAGGAGACA+GGG 0.684318 1:-42778011 None:intergenic
ACCTCCGGCACCGCACTCGG+CGG 0.707963 1:+42777796 MsG0180002671.01.T01:CDS
ATGGGATGGAGAGCTGATGG+TGG 0.712985 1:+42773284 MsG0180002671.01.T01:CDS
GAAGATGGTGATCAGAGCGG+TGG 0.715747 1:-42777834 None:intergenic
GTGACATTGATGAAACACCA+GGG 0.738025 1:+42778307 MsG0180002671.01.T01:CDS
GTTGAAGATGGTGATCAGAG+CGG 0.739472 1:-42777837 None:intergenic
CACAACTTACAAGTACATCG+AGG 0.757728 1:+42772080 MsG0180002671.01.T01:CDS
TACACCGTTTGAGATAAGGG+CGG 0.760695 1:+42772222 MsG0180002671.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAGTTGTTT+AGG + Chr1:42777361-42777380 MsG0180002671.01.T01:intron 10.0%
!! AAAATAAGGTTATAAAATTT+AGG + Chr1:42777259-42777278 MsG0180002671.01.T01:intron 10.0%
!! AAAATAATGATATAAATGAA+AGG - Chr1:42773839-42773858 None:intergenic 10.0%
!! AAATAATGATATAAATGAAA+GGG - Chr1:42773838-42773857 None:intergenic 10.0%
!! GATAATATACAATATATTTA+TGG - Chr1:42775855-42775874 None:intergenic 10.0%
!! TTAAATATTAAATAAGATTC+TGG + Chr1:42775902-42775921 MsG0180002671.01.T01:intron 10.0%
!!! ACCTAAAAAAATTAATTTTA+AGG + Chr1:42776861-42776880 MsG0180002671.01.T01:intron 10.0%
!!! ACCTTAAAATTAATTTTTTT+AGG - Chr1:42776865-42776884 None:intergenic 10.0%
!!! TAACCTTATTTTTTTTTAAA+AGG - Chr1:42777251-42777270 None:intergenic 10.0%
!!! TTAAAATTAATTTTTTTAGG+TGG - Chr1:42776862-42776881 None:intergenic 10.0%
!!! TTTTAATTAATATTTACAAG+AGG - Chr1:42776957-42776976 None:intergenic 10.0%
!! AAAGAAAAATCAATAAAGAT+TGG - Chr1:42777534-42777553 None:intergenic 15.0%
!! AATAAAATCATTATCAATTC+CGG + Chr1:42774455-42774474 MsG0180002671.01.T01:intron 15.0%
!! ACTAACATACAAAATTATAA+AGG + Chr1:42772998-42773017 MsG0180002671.01.T01:intron 15.0%
!! ACTATATTATATTATATGGA+AGG + Chr1:42775510-42775529 MsG0180002671.01.T01:intron 15.0%
!! ATATGTTTGATTCAAAATAA+AGG - Chr1:42777003-42777022 None:intergenic 15.0%
!! ATTTAAATATGTAAAATAGC+CGG - Chr1:42774477-42774496 None:intergenic 15.0%
!! TGACACTATATTATATTATA+TGG + Chr1:42775506-42775525 MsG0180002671.01.T01:intron 15.0%
!! TGGTAAAATAAATAGTATTT+AGG + Chr1:42777324-42777343 MsG0180002671.01.T01:intron 15.0%
!! TTAAAAAGACTAAAATTTAG+TGG - Chr1:42774829-42774848 None:intergenic 15.0%
!!! ATAATGATTTTATACCTTAT+AGG - Chr1:42774416-42774435 None:intergenic 15.0%
!!! ATTCTGATTTATATTTTAAC+TGG + Chr1:42772168-42772187 MsG0180002671.01.T01:intron 15.0%
!!! GTTAATTTACTTTTTTTGTA+TGG - Chr1:42776917-42776936 None:intergenic 15.0%
!!! TACATGTTTATTTCATTTTT+AGG + Chr1:42773214-42773233 MsG0180002671.01.T01:intron 15.0%
!!! TGACCTTTTAAAAAAAAATA+AGG + Chr1:42777245-42777264 MsG0180002671.01.T01:intron 15.0%
!! AAAAAAAAAGTTGTTTAGGT+TGG + Chr1:42777365-42777384 MsG0180002671.01.T01:intron 20.0%
!! AAGTAGGATCATATTTAAAT+TGG - Chr1:42774563-42774582 None:intergenic 20.0%
!! AATTTGAAAAACCAAAATTG+AGG - Chr1:42773958-42773977 None:intergenic 20.0%
!! AATTTGTAGTAAAATTCAGA+TGG + Chr1:42775544-42775563 MsG0180002671.01.T01:intron 20.0%
!! AGAAGATTTGATATATTGTT+TGG - Chr1:42774900-42774919 None:intergenic 20.0%
!! AGCAATAGAATATAAAAGAT+AGG + Chr1:42775263-42775282 MsG0180002671.01.T01:intron 20.0%
!! ATATGCCATTCAAAAAAAAA+AGG + Chr1:42776529-42776548 MsG0180002671.01.T01:intron 20.0%
!! ATCATCAATAAAATTCCAAT+AGG - Chr1:42772025-42772044 None:intergenic 20.0%
!! ATTGACCAAAAAGAATTTAA+TGG - Chr1:42773892-42773911 None:intergenic 20.0%
!! GCTAATAATAAATGTATTGT+AGG - Chr1:42775625-42775644 None:intergenic 20.0%
!! GTAGATAAAAACAATACATT+TGG - Chr1:42773710-42773729 None:intergenic 20.0%
!! TAATTAATATTTACAAGAGG+AGG - Chr1:42776954-42776973 None:intergenic 20.0%
!! TAGAAACAACTTAATCTTAA+CGG - Chr1:42776610-42776629 None:intergenic 20.0%
!! TTCATTAATAGCATCATAAA+AGG - Chr1:42772375-42772394 None:intergenic 20.0%
!!! AAAAAAAAGTTGTTTAGGTT+GGG + Chr1:42777366-42777385 MsG0180002671.01.T01:intron 20.0%
!!! AAATGTTTTCTTAAAAGTAG+TGG - Chr1:42772907-42772926 None:intergenic 20.0%
!!! AAATTGGTTTTACTTCATTA+AGG - Chr1:42774547-42774566 None:intergenic 20.0%
!!! CTACTTTTAAGAAAACATTT+TGG + Chr1:42772907-42772926 MsG0180002671.01.T01:intron 20.0%
!!! CTTAGACTTACATTTTTTTA+AGG - Chr1:42777294-42777313 None:intergenic 20.0%
!!! TAAGTCTAAGATAGATAAAT+TGG + Chr1:42777304-42777323 MsG0180002671.01.T01:intron 20.0%
!!! TTTTTTATTGGTGTTCTTTT+TGG + Chr1:42776353-42776372 MsG0180002671.01.T01:intron 20.0%
! AAAAAGAAAACTATCCAGAA+GGG - Chr1:42773429-42773448 None:intergenic 25.0%
! AAACAAACCAAAAAGAATAG+TGG - Chr1:42773680-42773699 None:intergenic 25.0%
! AACATCATGTTTATGTTTCT+TGG - Chr1:42777869-42777888 None:intergenic 25.0%
! ACAAGATGTAAAACATTATG+GGG - Chr1:42773749-42773768 None:intergenic 25.0%
! ACTAAATTGTTTGTGTTTGT+AGG + Chr1:42772115-42772134 MsG0180002671.01.T01:intron 25.0%
! AGAAAAAATAAGATCATTCC+GGG - Chr1:42776042-42776061 None:intergenic 25.0%
! AGAAGTGAAAAAGGTTTAAA+AGG + Chr1:42773779-42773798 MsG0180002671.01.T01:intron 25.0%
! AGAATGGGAATTTAGTAATA+TGG + Chr1:42777104-42777123 MsG0180002671.01.T01:intron 25.0%
! AGACATGAAAATGAAATTTG+AGG - Chr1:42774709-42774728 None:intergenic 25.0%
! AGACATTAAGACATATTACA+AGG - Chr1:42773098-42773117 None:intergenic 25.0%
! ATGATTATCATACACCTAAA+AGG + Chr1:42778229-42778248 MsG0180002671.01.T01:CDS 25.0%
! ATGTATTGTAGGTTTAAACT+AGG - Chr1:42775614-42775633 None:intergenic 25.0%
! CACAAGATGTAAAACATTAT+GGG - Chr1:42773750-42773769 None:intergenic 25.0%
! CAGAAAAAATAAGATCATTC+CGG - Chr1:42776043-42776062 None:intergenic 25.0%
! CTGTGAAAAGAAAGAAATTA+GGG - Chr1:42777575-42777594 None:intergenic 25.0%
! GAAAAATCTTATCATAGTCA+AGG - Chr1:42777924-42777943 None:intergenic 25.0%
! GAAATGAAGAAAAATGATGA+AGG + Chr1:42778567-42778586 MsG0180002671.01.T01:CDS 25.0%
! GAAGTGAAAAAGGTTTAAAA+GGG + Chr1:42773780-42773799 MsG0180002671.01.T01:intron 25.0%
! GATAAAAACAATACATTTGG+TGG - Chr1:42773707-42773726 None:intergenic 25.0%
! GTTATCTGTAGATAATGAAT+GGG - Chr1:42778493-42778512 None:intergenic 25.0%
! GTTTGATTCAAAATAAAGGA+GGG - Chr1:42776999-42777018 None:intergenic 25.0%
! TAATAACACTAAGAAGAGTT+TGG + Chr1:42778449-42778468 MsG0180002671.01.T01:CDS 25.0%
! TAGAATATAAAAGATAGGAG+AGG + Chr1:42775268-42775287 MsG0180002671.01.T01:intron 25.0%
! TCTTATGTTTCATTGGTATA+CGG + Chr1:42774145-42774164 MsG0180002671.01.T01:intron 25.0%
! TGAAGTTAGAAAAAGTTGTT+AGG + Chr1:42778622-42778641 MsG0180002671.01.T01:CDS 25.0%
! TGTTATCTGTAGATAATGAA+TGG - Chr1:42778494-42778513 None:intergenic 25.0%
! TGTTTGATTCAAAATAAAGG+AGG - Chr1:42777000-42777019 None:intergenic 25.0%
! TTATCTGTAGATAATGAATG+GGG - Chr1:42778492-42778511 None:intergenic 25.0%
! TTGATAGGATAGTTAGAATA+AGG - Chr1:42776575-42776594 None:intergenic 25.0%
! TTTGATTCAAAATAAAGGAG+GGG - Chr1:42776998-42777017 None:intergenic 25.0%
!! AGTTCTAATCAAAGAAGATT+CGG - Chr1:42772833-42772852 None:intergenic 25.0%
!! CATTCATGTATTCTTTTGAA+TGG + Chr1:42775178-42775197 MsG0180002671.01.T01:intron 25.0%
!! GTCTTTTATGATACAATGAA+AGG - Chr1:42775091-42775110 None:intergenic 25.0%
!! TGTTCATATTTTCATAGAGA+GGG - Chr1:42775460-42775479 None:intergenic 25.0%
!!! AAGTTTTGTCACACTTTTTA+CGG + Chr1:42773524-42773543 MsG0180002671.01.T01:intron 25.0%
!!! AATGATCTTATTTTTTCTGG+TGG + Chr1:42776044-42776063 MsG0180002671.01.T01:intron 25.0%
!!! ACAAAAATGTTGACTTTGAA+AGG + Chr1:42774186-42774205 MsG0180002671.01.T01:intron 25.0%
!!! ACACTGCAAATATTTTGTTT+CGG + Chr1:42772459-42772478 MsG0180002671.01.T01:intron 25.0%
!!! ACAGATGATGTGTATTTTAA+TGG - Chr1:42777065-42777084 None:intergenic 25.0%
!!! AGTAGAATTTTTTCTTCAGA+AGG - Chr1:42772981-42773000 None:intergenic 25.0%
!!! AGTCACCTTTTTTTTTTGAA+TGG - Chr1:42776537-42776556 None:intergenic 25.0%
!!! CTTGTACATTTTCTAAGAAA+GGG - Chr1:42773809-42773828 None:intergenic 25.0%
!!! TATATTTTAACTGGTAGTGA+AGG + Chr1:42772177-42772196 MsG0180002671.01.T01:intron 25.0%
!!! TATTTCATTTTTAGGCATAC+TGG + Chr1:42773222-42773241 MsG0180002671.01.T01:intron 25.0%
!!! TGGAATTTTATTGATGATTC+TGG + Chr1:42772027-42772046 MsG0180002671.01.T01:CDS 25.0%
AAAAACAAAGCCGTTAAGAT+CGG - Chr1:42777414-42777433 None:intergenic 30.0%
AAAATGATGAAGGTGAAACA+AGG + Chr1:42778577-42778596 MsG0180002671.01.T01:CDS 30.0%
AAATAAACTAGATTCGCAGT+GGG - Chr1:42776790-42776809 None:intergenic 30.0%
AACATGGAGAAATATCAATG+TGG + Chr1:42774681-42774700 MsG0180002671.01.T01:intron 30.0%
AACTTTGATACACTTGTTTC+TGG + Chr1:42773919-42773938 MsG0180002671.01.T01:intron 30.0%
AAGAAGATGATGCTAATGAA+CGG + Chr1:42777689-42777708 MsG0180002671.01.T01:intron 30.0%
ACAGATAACTGAAGAATTTG+AGG + Chr1:42774017-42774036 MsG0180002671.01.T01:intron 30.0%
ACATTGATATTTCTCCATGT+TGG - Chr1:42774682-42774701 None:intergenic 30.0%
ACCATGTATGTACAATGTTT+CGG - Chr1:42775129-42775148 None:intergenic 30.0%
ACTAAATTCCCATTCTAGTA+GGG - Chr1:42777100-42777119 None:intergenic 30.0%
ATGCATGTCTTATGTTTCAT+TGG + Chr1:42774138-42774157 MsG0180002671.01.T01:intron 30.0%
ATGTACTTGTAAGTTGTGTT+TGG - Chr1:42772078-42772097 None:intergenic 30.0%
ATTCGTTAAAGCTTGAGATA+AGG - Chr1:42772307-42772326 None:intergenic 30.0%
ATTGGTGTAGAAGAATAGAT+TGG - Chr1:42777516-42777535 None:intergenic 30.0%
CACATTGAAGAAGAAAGTAA+AGG - Chr1:42773055-42773074 None:intergenic 30.0%
CCACAAGATGTAAAACATTA+TGG - Chr1:42773751-42773770 None:intergenic 30.0%
GAAAAAGAAAACTATCCAGA+AGG - Chr1:42773430-42773449 None:intergenic 30.0%
GAAGTTGGAAAAAGAGAAAT+AGG - Chr1:42774963-42774982 None:intergenic 30.0%
GATGAGCAGAAAAAGAATAT+TGG + Chr1:42777724-42777743 MsG0180002671.01.T01:intron 30.0%
GCAAAGACATTTAAATGTTG+AGG + Chr1:42775576-42775595 MsG0180002671.01.T01:intron 30.0%
GCTGTGAAAAGAAAGAAATT+AGG - Chr1:42777576-42777595 None:intergenic 30.0%
GGTACACTAAATGATATTCT+CGG - Chr1:42773372-42773391 None:intergenic 30.0%
GTTATTATTAACCTTCACCT+TGG - Chr1:42778436-42778455 None:intergenic 30.0%
TAAATAAACTAGATTCGCAG+TGG - Chr1:42776791-42776810 None:intergenic 30.0%
TACTAAATTCCCATTCTAGT+AGG - Chr1:42777101-42777120 None:intergenic 30.0%
TATGCTTTAGTGTTTGTGTT+TGG + Chr1:42771850-42771869 MsG0180002671.01.T01:CDS 30.0%
TATTTGGATAAGTCAATAGC+TGG - Chr1:42778084-42778103 None:intergenic 30.0%
TCTAATCAACTATGTAGACA+AGG + Chr1:42775810-42775829 MsG0180002671.01.T01:intron 30.0%
TCTTTGTATCTCTGTTGTAT+TGG - Chr1:42775300-42775319 None:intergenic 30.0%
TGATATAAATGAAAGGGATC+TGG - Chr1:42773832-42773851 None:intergenic 30.0%
TGATCTTGATCAATTTCAAG+TGG + Chr1:42778047-42778066 MsG0180002671.01.T01:CDS 30.0%
TGTTATACATGTCAATTCCT+CGG + Chr1:42774612-42774631 MsG0180002671.01.T01:intron 30.0%
TTGGAAAAAGAGAAATAGGT+AGG - Chr1:42774959-42774978 None:intergenic 30.0%
TTTCAATAGGTTCTTGGTTT+AGG + Chr1:42771791-42771810 MsG0180002671.01.T01:CDS 30.0%
! ACTAGCAAATGACAATTTTG+CGG - Chr1:42775775-42775794 None:intergenic 30.0%
! ACTGAATACTTCCTCAATTT+TGG + Chr1:42773944-42773963 MsG0180002671.01.T01:intron 30.0%
! ATGATGATGTTCTTTCTCTA+TGG - Chr1:42777601-42777620 None:intergenic 30.0%
! ATGATGTTCTTGATGATCAT+AGG + Chr1:42777881-42777900 MsG0180002671.01.T01:CDS 30.0%
! CACTCATTTCAAAGTCTTTT+TGG + Chr1:42773468-42773487 MsG0180002671.01.T01:intron 30.0%
! CATTACGTCATTACATCTTT+TGG - Chr1:42775724-42775743 None:intergenic 30.0%
! CCATAATGTTTTACATCTTG+TGG + Chr1:42773748-42773767 MsG0180002671.01.T01:intron 30.0%
! CGGATCCATTAAATTCTTTT+TGG + Chr1:42773884-42773903 MsG0180002671.01.T01:intron 30.0%
! CTGTTCATATTTTCATAGAG+AGG - Chr1:42775461-42775480 None:intergenic 30.0%
! GTTGTTACTCATTAGTTTGA+CGG + Chr1:42772142-42772161 MsG0180002671.01.T01:intron 30.0%
! TATTAATAGCTGACTAGCTA+GGG - Chr1:42777459-42777478 None:intergenic 30.0%
! TGTGTTTGGAATTCCATTAT+AGG - Chr1:42772064-42772083 None:intergenic 30.0%
! TTATCTCAAGCTTTAACGAA+TGG + Chr1:42772306-42772325 MsG0180002671.01.T01:intron 30.0%
! TTATTAATAGCTGACTAGCT+AGG - Chr1:42777460-42777479 None:intergenic 30.0%
! TTCAGAGAGTTGCTTTATTA+AGG + Chr1:42774112-42774131 MsG0180002671.01.T01:intron 30.0%
! TTCTTTGTTTGATTTCATCC+AGG + Chr1:42772934-42772953 MsG0180002671.01.T01:intron 30.0%
! TTGATTAGTTCTCTGTACTA+TGG - Chr1:42775398-42775417 None:intergenic 30.0%
! TTTAGAGTATATGATCCACT+TGG + Chr1:42774581-42774600 MsG0180002671.01.T01:intron 30.0%
! TTTAGGTTCTTTCCTTTCTT+GGG - Chr1:42775355-42775374 None:intergenic 30.0%
! TTTTACATCTTGTGGAAGTA+GGG + Chr1:42773756-42773775 MsG0180002671.01.T01:intron 30.0%
!! AAAATTGAGGAAGTATTCAG+TGG - Chr1:42773945-42773964 None:intergenic 30.0%
!! ACAACATGTCTTGTTTCAAT+AGG + Chr1:42771778-42771797 MsG0180002671.01.T01:CDS 30.0%
!! AGACTTTGAAATGAGTGAAA+AGG - Chr1:42773465-42773484 None:intergenic 30.0%
!! AGTTTTGTCACACTTTTTAC+GGG + Chr1:42773525-42773544 MsG0180002671.01.T01:intron 30.0%
!! CCTTCTGTATTTGAGTTTTA+CGG + Chr1:42775646-42775665 MsG0180002671.01.T01:intron 30.0%
!! GCTTGTACATTTTCTAAGAA+AGG - Chr1:42773810-42773829 None:intergenic 30.0%
!! TAGAATAAGGAGTACTAATG+TGG - Chr1:42776562-42776581 None:intergenic 30.0%
!! TGCATAATTTTGAGAACAGA+AGG + Chr1:42773982-42774001 MsG0180002671.01.T01:intron 30.0%
!! TGGATCATATACTCTAAAGT+AGG - Chr1:42774579-42774598 None:intergenic 30.0%
!! TTGCTTGGTAGTTTTACTTT+TGG + Chr1:42772697-42772716 MsG0180002671.01.T01:intron 30.0%
!!! CGGAATGATCTTATTTTTTC+TGG + Chr1:42776041-42776060 MsG0180002671.01.T01:intron 30.0%
!!! GATGATGTGTATTTTAATGG+AGG - Chr1:42777062-42777081 None:intergenic 30.0%
!!! GTGTATTTTAATGGAGGATA+GGG - Chr1:42777056-42777075 None:intergenic 30.0%
!!! TGTATTTTAATGGAGGATAG+GGG - Chr1:42777055-42777074 None:intergenic 30.0%
!!! TGTGTATTTTAATGGAGGAT+AGG - Chr1:42777057-42777076 None:intergenic 30.0%
!!! TTGGTGTTCTTTTTGGTTTT+TGG + Chr1:42776360-42776379 MsG0180002671.01.T01:intron 30.0%
AAATGACATCTGTGGCTAAA+TGG - Chr1:42773153-42773172 None:intergenic 35.0%
AACATCCAGAAACAAGATAG+TGG + Chr1:42778285-42778304 MsG0180002671.01.T01:CDS 35.0%
AATTCCATTATAGGACGAGA+GGG - Chr1:42772055-42772074 None:intergenic 35.0%
ACCGAAACATTGTACATACA+TGG + Chr1:42775125-42775144 MsG0180002671.01.T01:intron 35.0%
ACCTATTGCCAAACAAGATA+AGG - Chr1:42773600-42773619 None:intergenic 35.0%
ACTTCATTGGATCAGATTTG+AGG + Chr1:42774756-42774775 MsG0180002671.01.T01:intron 35.0%
AGAGTTTGTGAAGAGAGAAA+GGG - Chr1:42774934-42774953 None:intergenic 35.0%
AGGAAAGAACCTAAAGAAAC+AGG + Chr1:42775360-42775379 MsG0180002671.01.T01:intron 35.0%
ATCCAGGTGATATCATTGAT+AGG + Chr1:42772950-42772969 MsG0180002671.01.T01:intron 35.0%
ATCCTATCAATGATATCACC+TGG - Chr1:42772955-42772974 None:intergenic 35.0%
ATGATGTTCTTTCTCTATGG+CGG - Chr1:42777598-42777617 None:intergenic 35.0%
ATTCAAAATAAAGGAGGGGA+GGG - Chr1:42776994-42777013 None:intergenic 35.0%
ATTCTGCAACTGTTCCTATA+AGG + Chr1:42774399-42774418 MsG0180002671.01.T01:intron 35.0%
CCGTAAAACTCAAATACAGA+AGG - Chr1:42775649-42775668 None:intergenic 35.0%
CCTATTGCCAAACAAGATAA+GGG - Chr1:42773599-42773618 None:intergenic 35.0%
CTATTGCCAAACAAGATAAG+GGG - Chr1:42773598-42773617 None:intergenic 35.0%
CTGCGATAACATATGAAGAT+AGG + Chr1:42771980-42771999 MsG0180002671.01.T01:CDS 35.0%
CTTCATTGGATCAGATTTGA+GGG + Chr1:42774757-42774776 MsG0180002671.01.T01:intron 35.0%
CTTTAACGAATGGAAGATTC+TGG + Chr1:42772316-42772335 MsG0180002671.01.T01:intron 35.0%
GAATAACAGAGAAAAGAGCT+TGG + Chr1:42778353-42778372 MsG0180002671.01.T01:CDS 35.0%
GAATATGATGCACTTGTGAA+GGG - Chr1:42776726-42776745 None:intergenic 35.0%
GGTGATGCTAATAATAGCAA+GGG + Chr1:42771892-42771911 MsG0180002671.01.T01:CDS 35.0%
GTAAATTGTCATACTCACTC+TGG - Chr1:42774339-42774358 None:intergenic 35.0%
GTCTTAATGTCTCGAATAGT+TGG + Chr1:42773106-42773125 MsG0180002671.01.T01:intron 35.0%
TAACTGTACAAATACACCAG+AGG - Chr1:42776472-42776491 None:intergenic 35.0%
TAGTTTGGCATGCTGTTATT+TGG + Chr1:42776003-42776022 MsG0180002671.01.T01:intron 35.0%
TATCCAACATACTCTCTCTA+GGG + Chr1:42776628-42776647 MsG0180002671.01.T01:intron 35.0%
TGAATATGATGCACTTGTGA+AGG - Chr1:42776727-42776746 None:intergenic 35.0%
TGATTTGAATGAGCTTCCAA+TGG + Chr1:42778650-42778669 MsG0180002671.01.T01:CDS 35.0%
TGGATGTACAAGAAGATTCT+TGG - Chr1:42772887-42772906 None:intergenic 35.0%
TGTACAATTAGATAGACCAC+AGG - Chr1:42772727-42772746 None:intergenic 35.0%
TGTGGTCTATCTAATTGTAC+AGG + Chr1:42772726-42772745 MsG0180002671.01.T01:intron 35.0%
TGTTTATGTTTCTTGGTCAG+AGG - Chr1:42777862-42777881 None:intergenic 35.0%
TTAAAGCTTGAGATAAGGAG+AGG - Chr1:42772302-42772321 None:intergenic 35.0%
TTCTGCACTAATAGTAATCG+TGG + Chr1:42773186-42773205 MsG0180002671.01.T01:intron 35.0%
TTCTTGCTCTTTCTATGAGT+GGG + Chr1:42776145-42776164 MsG0180002671.01.T01:intron 35.0%
TTTACTCCCCTTATCTTGTT+TGG + Chr1:42773589-42773608 MsG0180002671.01.T01:intron 35.0%
! ACTTTGACACCTGTTTCTTT+AGG - Chr1:42775372-42775391 None:intergenic 35.0%
! AGCTGTTGTTTGGCAAAAAA+TGG - Chr1:42775428-42775447 None:intergenic 35.0%
! ATTCTTTTTCTGCTCATCAC+TGG - Chr1:42777722-42777741 None:intergenic 35.0%
! CGCAGAATTTGAATTTTGTG+AGG - Chr1:42771965-42771984 None:intergenic 35.0%
! CTTGAAAGTTTGAGCCTTTT+AGG - Chr1:42778246-42778265 None:intergenic 35.0%
! CTTGATCAATTTCAAGTGGA+TGG + Chr1:42778051-42778070 MsG0180002671.01.T01:CDS 35.0%
! CTTTAGGTTCTTTCCTTTCT+TGG - Chr1:42775356-42775375 None:intergenic 35.0%
! GCGAAGAATCTAAAATGTGT+AGG - Chr1:42775013-42775032 None:intergenic 35.0%
! GTTTTACATCTTGTGGAAGT+AGG + Chr1:42773755-42773774 MsG0180002671.01.T01:intron 35.0%
! GTTTTACTTCATTAAGGCAC+TGG - Chr1:42774541-42774560 None:intergenic 35.0%
! TAAGCATGATGCATTTTCTG+AGG + Chr1:42776675-42776694 MsG0180002671.01.T01:intron 35.0%
! TGCTTTTGCTTCTATTTGCT+TGG + Chr1:42772682-42772701 MsG0180002671.01.T01:intron 35.0%
! TTTAACTGGTAGTGAAGGAT+CGG + Chr1:42772182-42772201 MsG0180002671.01.T01:intron 35.0%
!! AATAAGATTCTGGTTCCGTT+AGG + Chr1:42775912-42775931 MsG0180002671.01.T01:intron 35.0%
!! ACAGTTTCTAGTGGTATTAG+TGG + Chr1:42772523-42772542 MsG0180002671.01.T01:CDS 35.0%
!! GTCTTGTTTCAATAGGTTCT+TGG + Chr1:42771785-42771804 MsG0180002671.01.T01:CDS 35.0%
!! GTTTGTTTTCTGTCCTTTTG+CGG + Chr1:42776310-42776329 MsG0180002671.01.T01:intron 35.0%
!! GTTTTGTCACACTTTTTACG+GGG + Chr1:42773526-42773545 MsG0180002671.01.T01:intron 35.0%
!! TCTCTAGGGTAATAAATGTG+CGG + Chr1:42776642-42776661 MsG0180002671.01.T01:intron 35.0%
!! TCTTTTGACGTTGTTGTTCA+TGG - Chr1:42777669-42777688 None:intergenic 35.0%
!! TTTAGCCACAGATGTCATTT+TGG + Chr1:42773153-42773172 MsG0180002671.01.T01:intron 35.0%
!! TTTGTTTTCTGTCCTTTTGC+GGG + Chr1:42776311-42776330 MsG0180002671.01.T01:intron 35.0%
!!! CTTGGGTGTCTGTTTTTTAT+TGG + Chr1:42776341-42776360 MsG0180002671.01.T01:intron 35.0%
!!! GTGTTCTTTTTGGTTTTTGG+TGG + Chr1:42776363-42776382 MsG0180002671.01.T01:intron 35.0%
!!! TTTTTGGTTTGATGGGATCT+TGG - Chr1:42778114-42778133 None:intergenic 35.0%
AAGAACTAGGCTAGACCTAA+CGG - Chr1:42775930-42775949 None:intergenic 40.0%
AAGATCTTGCAGACATCAGA+AGG + Chr1:42778513-42778532 MsG0180002671.01.T01:CDS 40.0%
AAGGAGAGAACAGAGTCATA+AGG + Chr1:42778596-42778615 MsG0180002671.01.T01:CDS 40.0%
ACCAAACAACCCTACTAGAA+TGG + Chr1:42777088-42777107 MsG0180002671.01.T01:intron 40.0%
ACCAACCAAAATGACATCTG+TGG - Chr1:42773161-42773180 None:intergenic 40.0%
AGAAAGAGCAAGAACTAGCA+GGG - Chr1:42776139-42776158 None:intergenic 40.0%
AGAGTATATGATCCACTTGG+AGG + Chr1:42774584-42774603 MsG0180002671.01.T01:intron 40.0%
AGGAAATTCCTGTTCAAAGC+CGG + Chr1:42774037-42774056 MsG0180002671.01.T01:CDS 40.0%
AGGATGAGCTAAACACATCA+CGG - Chr1:42773078-42773097 None:intergenic 40.0%
AGGGTAATAAATGTGCGGAT+TGG + Chr1:42776647-42776666 MsG0180002671.01.T01:intron 40.0%
ATACTCTTGGATATGTCTCG+TGG + Chr1:42778189-42778208 MsG0180002671.01.T01:CDS 40.0%
ATAGCACGTCGAAAGAGATT+AGG - Chr1:42772425-42772444 None:intergenic 40.0%
ATAGGCCTGCTTTAACAGTT+GGG + Chr1:42771998-42772017 MsG0180002671.01.T01:CDS 40.0%
ATCACACTTCACTTACCTCT+CGG - Chr1:42777137-42777156 None:intergenic 40.0%
ATCACTCTGTTGTTCCAAGA+AGG - Chr1:42778022-42778041 None:intergenic 40.0%
ATCAGCGAAGAAACAAGCTA+GGG + Chr1:42775035-42775054 MsG0180002671.01.T01:intron 40.0%
ATGAATCCCACTTGTGTGAA+TGG + Chr1:42774730-42774749 MsG0180002671.01.T01:intron 40.0%
ATTCTGATACCTTGCGTGTT+TGG - Chr1:42774260-42774279 None:intergenic 40.0%
CAATGTCAATAGAGCCATGT+TGG - Chr1:42778545-42778564 None:intergenic 40.0%
CACAACTTACAAGTACATCG+AGG + Chr1:42772080-42772099 MsG0180002671.01.T01:CDS 40.0%
CAGTGCAAAAAGCAAAAGAG+AGG - Chr1:42773026-42773045 None:intergenic 40.0%
CCAAACAACCCTACTAGAAT+GGG + Chr1:42777089-42777108 MsG0180002671.01.T01:intron 40.0%
CCTTCATCATCTAATGACAC+TGG + Chr1:42778396-42778415 MsG0180002671.01.T01:CDS 40.0%
CTATCCAACATACTCTCTCT+AGG + Chr1:42776627-42776646 MsG0180002671.01.T01:intron 40.0%
CTTGTTAATACCCTTCACCT+TGG - Chr1:42778334-42778353 None:intergenic 40.0%
CTTTAACAGTTGGGTCCTAT+TGG + Chr1:42772007-42772026 MsG0180002671.01.T01:CDS 40.0%
GAAGTAGGGAGAAGTGAAAA+AGG + Chr1:42773770-42773789 MsG0180002671.01.T01:intron 40.0%
GAATGAGTGAAAGAGTGAAG+AGG - Chr1:42777484-42777503 None:intergenic 40.0%
GAATGCAGCACATATACTCT+TGG + Chr1:42778176-42778195 MsG0180002671.01.T01:CDS 40.0%
GAATTCCATTATAGGACGAG+AGG - Chr1:42772056-42772075 None:intergenic 40.0%
GAGAGTTTGTGAAGAGAGAA+AGG - Chr1:42774935-42774954 None:intergenic 40.0%
GAGGACCACTAGTATCATAT+GGG - Chr1:42773393-42773412 None:intergenic 40.0%
GATTCAAAATAAAGGAGGGG+AGG - Chr1:42776995-42777014 None:intergenic 40.0%
GGATCTTGGAGGCAAATATT+TGG - Chr1:42778100-42778119 None:intergenic 40.0%
GGGTGATGCTAATAATAGCA+AGG + Chr1:42771891-42771910 MsG0180002671.01.T01:CDS 40.0%
GTGACATTGATGAAACACCA+GGG + Chr1:42778307-42778326 MsG0180002671.01.T01:CDS 40.0%
GTGTACCCATATGATACTAG+TGG + Chr1:42773385-42773404 MsG0180002671.01.T01:intron 40.0%
GTTCTTGCTCTTTCTATGAG+TGG + Chr1:42776144-42776163 MsG0180002671.01.T01:intron 40.0%
TAGAAAGAGCAAGAACTAGC+AGG - Chr1:42776140-42776159 None:intergenic 40.0%
TAGTTCTTCCTGTCCTTTAC+GGG + Chr1:42775942-42775961 MsG0180002671.01.T01:intron 40.0%
TCATCTGCAACATCATCCAT+TGG - Chr1:42778669-42778688 None:intergenic 40.0%
TTAACCTTCACCTTGGTATC+TGG - Chr1:42778429-42778448 None:intergenic 40.0%
TTGGATAAGTCAATAGCTGG+TGG - Chr1:42778081-42778100 None:intergenic 40.0%
TTGGATCAGATTTGAGGGAA+AGG + Chr1:42774762-42774781 MsG0180002671.01.T01:intron 40.0%
! ACACTACACCGTTTGAGATA+AGG + Chr1:42772218-42772237 MsG0180002671.01.T01:CDS 40.0%
! ATGCTGTTATTTGGACCATC+TGG + Chr1:42776012-42776031 MsG0180002671.01.T01:intron 40.0%
! ATGTCTCGAATAGTTGGCTT+AGG + Chr1:42773112-42773131 MsG0180002671.01.T01:intron 40.0%
! CACTACACCGTTTGAGATAA+GGG + Chr1:42772219-42772238 MsG0180002671.01.T01:CDS 40.0%
! CCAGTGTCATTAGATGATGA+AGG - Chr1:42778399-42778418 None:intergenic 40.0%
! CCCTTATCTTGTTTGGCAAT+AGG + Chr1:42773596-42773615 MsG0180002671.01.T01:intron 40.0%
! CTAGTTCTTCCTGTCCTTTA+CGG + Chr1:42775941-42775960 MsG0180002671.01.T01:intron 40.0%
! CTCTTCAGAACAGTTTCTAG+TGG + Chr1:42772514-42772533 MsG0180002671.01.T01:intron 40.0%
! CTTAGCTTGAAAGTAGTTCC+TGG + Chr1:42776106-42776125 MsG0180002671.01.T01:intron 40.0%
! GGTAGTCTTTTTCTCAGCAA+AGG + Chr1:42773329-42773348 MsG0180002671.01.T01:CDS 40.0%
! GTGAGGCTTTTACTTTGTGA+TGG + Chr1:42772655-42772674 MsG0180002671.01.T01:intron 40.0%
! GTGCTGTCCACTATTCTTTT+TGG + Chr1:42773670-42773689 MsG0180002671.01.T01:intron 40.0%
! GTTTGGTTCGAAAGAGAAGT+TGG - Chr1:42774978-42774997 None:intergenic 40.0%
! TGGTGTCAGTGCTTTGATTT+GGG + Chr1:42771870-42771889 MsG0180002671.01.T01:CDS 40.0%
! TGTCACCACTATCTTGTTTC+TGG - Chr1:42778293-42778312 None:intergenic 40.0%
! TTACCCTAGAGAGAGTATGT+TGG - Chr1:42776634-42776653 None:intergenic 40.0%
!! ACTTCATTAAGGCACTGGTA+AGG - Chr1:42774536-42774555 None:intergenic 40.0%
!! ATTTTAATGGAGGATAGGGG+AGG - Chr1:42777052-42777071 None:intergenic 40.0%
!! CACTAGAAACTGTTCTGAAG+AGG - Chr1:42772516-42772535 None:intergenic 40.0%
!! CTGTATTTGAGTTTTACGGC+TGG + Chr1:42775650-42775669 MsG0180002671.01.T01:intron 40.0%
!! GCAGTCTTTTAGCTGTTGTT+TGG - Chr1:42775438-42775457 None:intergenic 40.0%
!! TTGGTGTCAGTGCTTTGATT+TGG + Chr1:42771869-42771888 MsG0180002671.01.T01:CDS 40.0%
!! TTTTACTTTTGGCATGCCTG+TGG + Chr1:42772708-42772727 MsG0180002671.01.T01:intron 40.0%
!! TTTTTCTCAGCAAAGGCACA+GGG + Chr1:42773336-42773355 MsG0180002671.01.T01:CDS 40.0%
!!! CCTTGTGCTTTTTCTTTGCA+GGG + Chr1:42776281-42776300 MsG0180002671.01.T01:intron 40.0%
!!! TCCTTGTGCTTTTTCTTTGC+AGG + Chr1:42776280-42776299 MsG0180002671.01.T01:intron 40.0%
!!! TTTTGGTGGTTTTGTGCTTG+AGG + Chr1:42776205-42776224 MsG0180002671.01.T01:intron 40.0%
AAAGCCGTTAAGATCGGTCA+GGG - Chr1:42777408-42777427 None:intergenic 45.0%
AAATTCCTGTTCAAAGCCGG+GGG + Chr1:42774040-42774059 MsG0180002671.01.T01:CDS 45.0%
AACACCAGATACCAAGGTGA+AGG + Chr1:42778422-42778441 MsG0180002671.01.T01:CDS 45.0%
AAGACCCTGACCGATCTTAA+CGG + Chr1:42777401-42777420 MsG0180002671.01.T01:intron 45.0%
AAGTGCACCATTCACACAAG+TGG - Chr1:42774740-42774759 None:intergenic 45.0%
ACTGCAACATACCTTCCATC+GGG - Chr1:42772592-42772611 None:intergenic 45.0%
AGGTCATGTAGAAGTTGCCA+CGG - Chr1:42772621-42772640 None:intergenic 45.0%
AGTGCACCATTCACACAAGT+GGG - Chr1:42774739-42774758 None:intergenic 45.0%
AGTGGTGCAAGCTATTACAC+TGG + Chr1:42772541-42772560 MsG0180002671.01.T01:CDS 45.0%
AGTTGCAACCTGTCCTTTGT+TGG + Chr1:42776168-42776187 MsG0180002671.01.T01:intron 45.0%
CATCAGCGAAGAAACAAGCT+AGG + Chr1:42775034-42775053 MsG0180002671.01.T01:intron 45.0%
CCAGAAGGGAATGAGTGAAA+AGG - Chr1:42773415-42773434 None:intergenic 45.0%
CCCATTCTAGTAGGGTTGTT+TGG - Chr1:42777092-42777111 None:intergenic 45.0%
CGGCGTCTTGAGAAATTGAT+AGG - Chr1:42776590-42776609 None:intergenic 45.0%
CGTAAAGGACAGGAAGAACT+AGG - Chr1:42775943-42775962 None:intergenic 45.0%
CTCTTTCGAACCAAACACAG+TGG + Chr1:42774982-42775001 MsG0180002671.01.T01:intron 45.0%
CTGAGGATGTTCTCAAGTCA+TGG + Chr1:42776692-42776711 MsG0180002671.01.T01:intron 45.0%
CTTGCTGAGATACACACACT+CGG + Chr1:42774652-42774671 MsG0180002671.01.T01:intron 45.0%
GAAATTCCTGTTCAAAGCCG+GGG + Chr1:42774039-42774058 MsG0180002671.01.T01:CDS 45.0%
GAAGAATCCAGAACATGGGA+TGG + Chr1:42773270-42773289 MsG0180002671.01.T01:CDS 45.0%
GAAGGGAATGAGTGAAAAGG+AGG - Chr1:42773412-42773431 None:intergenic 45.0%
GACTGCAACATACCTTCCAT+CGG - Chr1:42772593-42772612 None:intergenic 45.0%
GATAGGCCTGCTTTAACAGT+TGG + Chr1:42771997-42772016 MsG0180002671.01.T01:CDS 45.0%
GCCAGAAGAATCCAGAACAT+GGG + Chr1:42773266-42773285 MsG0180002671.01.T01:CDS 45.0%
GGAAATTCCTGTTCAAAGCC+GGG + Chr1:42774038-42774057 MsG0180002671.01.T01:CDS 45.0%
GGAGGACCACTAGTATCATA+TGG - Chr1:42773394-42773413 None:intergenic 45.0%
GGGTTTGGCATTCTTGATGT+CGG + Chr1:42774060-42774079 MsG0180002671.01.T01:CDS 45.0%
GGTGACATTGATGAAACACC+AGG + Chr1:42778306-42778325 MsG0180002671.01.T01:CDS 45.0%
GGTTAGGTTTGCGTCTAGTT+TGG + Chr1:42775988-42776007 MsG0180002671.01.T01:intron 45.0%
GGTTTGGCATTCTTGATGTC+GGG + Chr1:42774061-42774080 MsG0180002671.01.T01:CDS 45.0%
GTGTGAATGGTGCACTTCAT+TGG + Chr1:42774743-42774762 MsG0180002671.01.T01:intron 45.0%
GTTGAAGATGGTGATCAGAG+CGG - Chr1:42777840-42777859 None:intergenic 45.0%
GTTGTTCCAAGAAGGAGACA+GGG - Chr1:42778014-42778033 None:intergenic 45.0%
TAATATGGACTCAGACCGAG+AGG + Chr1:42777119-42777138 MsG0180002671.01.T01:intron 45.0%
TAGATTCCTCCAAACACGCA+AGG + Chr1:42774248-42774267 MsG0180002671.01.T01:intron 45.0%
TAGGACCCAACTGTTAAAGC+AGG - Chr1:42772006-42772025 None:intergenic 45.0%
TATAACACGTCTCCTCCAAG+TGG - Chr1:42774599-42774618 None:intergenic 45.0%
TCGAACCAAACACAGTGGTA+GGG + Chr1:42774987-42775006 MsG0180002671.01.T01:intron 45.0%
TCTTGGTCAGAGGTTGAAGA+TGG - Chr1:42777852-42777871 None:intergenic 45.0%
TGCCAGAAGAATCCAGAACA+TGG + Chr1:42773265-42773284 MsG0180002671.01.T01:CDS 45.0%
TGGCAACTTCTACATGACCT+GGG + Chr1:42772621-42772640 MsG0180002671.01.T01:CDS 45.0%
TGGTGAAACACCAGATACCA+AGG + Chr1:42778416-42778435 MsG0180002671.01.T01:CDS 45.0%
TGTTGTTCCAAGAAGGAGAC+AGG - Chr1:42778015-42778034 None:intergenic 45.0%
TTCCTTTCTTGGGATCGTTC+AGG - Chr1:42775345-42775364 None:intergenic 45.0%
TTCGAACCAAACACAGTGGT+AGG + Chr1:42774986-42775005 MsG0180002671.01.T01:intron 45.0%
TTCTCCGCCCTTATCTCAAA+CGG - Chr1:42772229-42772248 None:intergenic 45.0%
! AAAAGCACAAGGAAAAGCCG+AGG - Chr1:42776273-42776292 None:intergenic 45.0%
! ATAGCTGACTAGCTAGGGTT+AGG - Chr1:42777454-42777473 None:intergenic 45.0%
! CCCTGCAAAGAAAAAGCACA+AGG - Chr1:42776284-42776303 None:intergenic 45.0%
! CCTTTTCACTCATTCCCTTC+TGG + Chr1:42773412-42773431 MsG0180002671.01.T01:intron 45.0%
! TACACCGTTTGAGATAAGGG+CGG + Chr1:42772222-42772241 MsG0180002671.01.T01:CDS 45.0%
! TAGCTGACTAGCTAGGGTTA+GGG - Chr1:42777453-42777472 None:intergenic 45.0%
! TCCCATGTTCTGGATTCTTC+TGG - Chr1:42773270-42773289 None:intergenic 45.0%
! TGATGTCGGGTATCGTTCAA+CGG + Chr1:42774074-42774093 MsG0180002671.01.T01:intron 45.0%
! TTCACTGATGCTGCGCTTTT+TGG - Chr1:42778130-42778149 None:intergenic 45.0%
! TTGGTTTGATGGGATCTTGG+AGG - Chr1:42778111-42778130 None:intergenic 45.0%
! TTTTGTGCTTGAGGTTGGGT+GGG + Chr1:42776214-42776233 MsG0180002671.01.T01:intron 45.0%
!! AAAGAATAGTGGACAGCACG+AGG - Chr1:42773669-42773688 None:intergenic 45.0%
!! ATTCTGGTTCTGGTTCTGGA+AGG + Chr1:42772332-42772351 MsG0180002671.01.T01:intron 45.0%
!! CGAATGGAAGATTCTGGTTC+TGG + Chr1:42772322-42772341 MsG0180002671.01.T01:intron 45.0%
!! CTTTTTCTCAGCAAAGGCAC+AGG + Chr1:42773335-42773354 MsG0180002671.01.T01:CDS 45.0%
!! GAAGATTCTGGTTCTGGTTC+TGG + Chr1:42772328-42772347 MsG0180002671.01.T01:intron 45.0%
!! GCGGAGAAAGCATTGAATAG+AGG + Chr1:42772241-42772260 MsG0180002671.01.T01:CDS 45.0%
!! GGTGTCAGTGCTTTGATTTG+GGG + Chr1:42771871-42771890 MsG0180002671.01.T01:CDS 45.0%
!! GGTTGTTTGTTGTGTGTTGC+TGG + Chr1:42771913-42771932 MsG0180002671.01.T01:CDS 45.0%
!! TCTGGAAGGTTCTGGAAGTA+GGG + Chr1:42772346-42772365 MsG0180002671.01.T01:intron 45.0%
!! TTCGTTGGCCTCTACCTTTT+CGG + Chr1:42776239-42776258 MsG0180002671.01.T01:intron 45.0%
!! TTCTGGAAGGTTCTGGAAGT+AGG + Chr1:42772345-42772364 MsG0180002671.01.T01:intron 45.0%
!! TTTTCTCAGCAAAGGCACAG+GGG + Chr1:42773337-42773356 MsG0180002671.01.T01:CDS 45.0%
!! TTTTGTGAGGTGCTTGTGTC+AGG - Chr1:42771952-42771971 None:intergenic 45.0%
!!! GCCACAGATGTCATTTTGGT+TGG + Chr1:42773157-42773176 MsG0180002671.01.T01:intron 45.0%
!!! GCTGCGCTTTTTGGTTTGAT+GGG - Chr1:42778121-42778140 None:intergenic 45.0%
!!! GTGGTTTTGTGCTTGAGGTT+GGG + Chr1:42776210-42776229 MsG0180002671.01.T01:intron 45.0%
!!! TGCTGCGCTTTTTGGTTTGA+TGG - Chr1:42778122-42778141 None:intergenic 45.0%
!!! TGCTTTTTCTTTGCAGGGCT+TGG + Chr1:42776286-42776305 MsG0180002671.01.T01:intron 45.0%
!!! TGGTTTTTGGTGGTGCCTTT+GGG + Chr1:42776373-42776392 MsG0180002671.01.T01:intron 45.0%
!!! TTGGTTTTTGGTGGTGCCTT+TGG + Chr1:42776372-42776391 MsG0180002671.01.T01:intron 45.0%
!! ATATATAATAAATATTGAAA+CGG + Chr1:42773864-42773883 MsG0180002671.01.T01:intron 5.0%
AAACTAGATTCGCAGTGGGC+AGG - Chr1:42776786-42776805 None:intergenic 50.0%
AACATGGGATGGAGAGCTGA+TGG + Chr1:42773281-42773300 MsG0180002671.01.T01:CDS 50.0%
AACCTGTCCTTTGTTGGCAG+CGG + Chr1:42776174-42776193 MsG0180002671.01.T01:intron 50.0%
AATGGAGGATAGGGGAGGAA+AGG - Chr1:42777047-42777066 None:intergenic 50.0%
ACACACTCGGAACACCAACA+TGG + Chr1:42774665-42774684 MsG0180002671.01.T01:intron 50.0%
ACTGTCAATCGATCTCCCGA+TGG + Chr1:42772574-42772593 MsG0180002671.01.T01:CDS 50.0%
AGTAAAAGCCTCACCTGACC+AGG - Chr1:42772649-42772668 None:intergenic 50.0%
ATCCTTCCCTGTCTCCTTCT+TGG + Chr1:42778005-42778024 MsG0180002671.01.T01:CDS 50.0%
ATGAGATCGCACCGCGAAAA+GGG + Chr1:42777952-42777971 MsG0180002671.01.T01:CDS 50.0%
ATGGAGGATAGGGGAGGAAA+GGG - Chr1:42777046-42777065 None:intergenic 50.0%
CAAAGCCGTTAAGATCGGTC+AGG - Chr1:42777409-42777428 None:intergenic 50.0%
CATCAAGAATGCCAAACCCC+CGG - Chr1:42774059-42774078 None:intergenic 50.0%
CGAGTGTGTGTATCTCAGCA+AGG - Chr1:42774654-42774673 None:intergenic 50.0%
CGCGAAAAGGGTTCTTCGAA+GGG + Chr1:42777964-42777983 MsG0180002671.01.T01:CDS 50.0%
CTCTTGGATATGTCTCGTGG+TGG + Chr1:42778192-42778211 MsG0180002671.01.T01:CDS 50.0%
CTGATACCTTGCGTGTTTGG+AGG - Chr1:42774257-42774276 None:intergenic 50.0%
CTGGCAACTGCTCTGTTATG+TGG - Chr1:42773251-42773270 None:intergenic 50.0%
GACCTGAACGATCCCAAGAA+AGG + Chr1:42775340-42775359 MsG0180002671.01.T01:intron 50.0%
GGAAGGAGAAAAACGCCCAA+AGG - Chr1:42776391-42776410 None:intergenic 50.0%
GGATCCCTCTCGTCCTATAA+TGG + Chr1:42772048-42772067 MsG0180002671.01.T01:CDS 50.0%
GTGGCAACTTCTACATGACC+TGG + Chr1:42772620-42772639 MsG0180002671.01.T01:CDS 50.0%
TATGTTGCAGTCTCAAGCCG+TGG + Chr1:42772601-42772620 MsG0180002671.01.T01:CDS 50.0%
TCAATCGATCTCCCGATGGA+AGG + Chr1:42772578-42772597 MsG0180002671.01.T01:CDS 50.0%
TCAGAAGGTTGCAGCCAACA+TGG + Chr1:42778528-42778547 MsG0180002671.01.T01:CDS 50.0%
TCCTGTCCTTTACGGGTCTA+GGG + Chr1:42775949-42775968 MsG0180002671.01.T01:intron 50.0%
TGAAGGATCGGAAGGTGACT+CGG + Chr1:42772194-42772213 MsG0180002671.01.T01:intron 50.0%
TGATGAAACACCAGGGACCA+AGG + Chr1:42778314-42778333 MsG0180002671.01.T01:CDS 50.0%
TGCCACAGAATCTTCACCTC+CGG + Chr1:42777781-42777800 MsG0180002671.01.T01:intron 50.0%
TTCCAAGAAGGAGACAGGGA+AGG - Chr1:42778010-42778029 None:intergenic 50.0%
TTCCTGTCCTTTACGGGTCT+AGG + Chr1:42775948-42775967 MsG0180002671.01.T01:intron 50.0%
TTGGATATGTCTCGTGGTGG+TGG + Chr1:42778195-42778214 MsG0180002671.01.T01:CDS 50.0%
TTTGTGCTTGAGGTTGGGTG+GGG + Chr1:42776215-42776234 MsG0180002671.01.T01:intron 50.0%
! ACTGGTAGTGAAGGATCGGA+AGG + Chr1:42772186-42772205 MsG0180002671.01.T01:intron 50.0%
! AGCGGTGGTGATGTGATTTG+TGG - Chr1:42777822-42777841 None:intergenic 50.0%
! AGTGGGAAGCGTGTTAGGTT+AGG + Chr1:42775972-42775991 MsG0180002671.01.T01:intron 50.0%
! CCTTCGAAGAACCCTTTTCG+CGG - Chr1:42777966-42777985 None:intergenic 50.0%
! CTTTTGCGGGTTTGCAGCTT+GGG + Chr1:42776324-42776343 MsG0180002671.01.T01:intron 50.0%
! GTTTTGTGCTTGAGGTTGGG+TGG + Chr1:42776213-42776232 MsG0180002671.01.T01:intron 50.0%
! TTTTCTCCTTCCCCGCTTGT+GGG + Chr1:42776399-42776418 MsG0180002671.01.T01:intron 50.0%
! TTTTTCTCCTTCCCCGCTTG+TGG + Chr1:42776398-42776417 MsG0180002671.01.T01:intron 50.0%
!! GTTCTGGTTCTGGAAGGTTC+TGG + Chr1:42772338-42772357 MsG0180002671.01.T01:intron 50.0%
!! GTTTTGGTGTGGGGTGTCTT+CGG + Chr1:42776442-42776461 MsG0180002671.01.T01:intron 50.0%
!! TACCCTAGGGGTTTTGGTGT+GGG + Chr1:42776432-42776451 MsG0180002671.01.T01:intron 50.0%
!! TTACCCTAGGGGTTTTGGTG+TGG + Chr1:42776431-42776450 MsG0180002671.01.T01:intron 50.0%
!!! GGTGGTTTTGTGCTTGAGGT+TGG + Chr1:42776209-42776228 MsG0180002671.01.T01:intron 50.0%
AAAGGAGGGGAGGGAATGAG+AGG - Chr1:42776985-42777004 None:intergenic 55.0%
AACACCAGGGACCAAGGTGA+AGG + Chr1:42778320-42778339 MsG0180002671.01.T01:CDS 55.0%
AAGCCAGGCCGAAAAGGTAG+AGG - Chr1:42776250-42776269 None:intergenic 55.0%
AAGGAAAAGCCGAGGAAGCC+AGG - Chr1:42776265-42776284 None:intergenic 55.0%
AAGGAGGGGAGGGAATGAGA+GGG - Chr1:42776984-42777003 None:intergenic 55.0%
ACACCAGGGACCAAGGTGAA+GGG + Chr1:42778321-42778340 MsG0180002671.01.T01:CDS 55.0%
ACCCCACACCAAAACCCCTA+GGG - Chr1:42776437-42776456 None:intergenic 55.0%
ATACCCTTCACCTTGGTCCC+TGG - Chr1:42778327-42778346 None:intergenic 55.0%
ATCATTCCGGGACGTCCAGA+TGG - Chr1:42776030-42776049 None:intergenic 55.0%
ATGGGATGGAGAGCTGATGG+TGG + Chr1:42773284-42773303 MsG0180002671.01.T01:CDS 55.0%
CAGCTCTCCATCCCATGTTC+TGG - Chr1:42773280-42773299 None:intergenic 55.0%
CATGAGATCGCACCGCGAAA+AGG + Chr1:42777951-42777970 MsG0180002671.01.T01:CDS 55.0%
CCAAGCTGCAAACCCGCAAA+AGG - Chr1:42776326-42776345 None:intergenic 55.0%
CCGCGAAAAGGGTTCTTCGA+AGG + Chr1:42777963-42777982 MsG0180002671.01.T01:CDS 55.0%
CCTTTACGGGTCTAGGGAGT+GGG + Chr1:42775955-42775974 MsG0180002671.01.T01:intron 55.0%
CGGTGCGATCTCATGTTGGA+TGG - Chr1:42777946-42777965 None:intergenic 55.0%
GAACACATGCTCAGAGTCCG+AGG - Chr1:42774632-42774651 None:intergenic 55.0%
GAAGATGGTGATCAGAGCGG+TGG - Chr1:42777837-42777856 None:intergenic 55.0%
GAAGGAGACAGGGAAGGATG+TGG - Chr1:42778004-42778023 None:intergenic 55.0%
GAGACAGGGAAGGATGTGGT+TGG - Chr1:42778000-42778019 None:intergenic 55.0%
GTAGGCCCTACCACTGTGTT+TGG - Chr1:42774995-42775014 None:intergenic 55.0%
GTCCTTTGTTGGCAGCGGTA+GGG + Chr1:42776179-42776198 MsG0180002671.01.T01:intron 55.0%
TAACCTCCAAGCCCCACAAG+CGG - Chr1:42776414-42776433 None:intergenic 55.0%
TACCGCTGCCAACAAAGGAC+AGG - Chr1:42776179-42776198 None:intergenic 55.0%
TCCCTAGACCCGTAAAGGAC+AGG - Chr1:42775953-42775972 None:intergenic 55.0%
TCCTTTACGGGTCTAGGGAG+TGG + Chr1:42775954-42775973 MsG0180002671.01.T01:intron 55.0%
TGCCGGAGGTGAAGATTCTG+TGG - Chr1:42777786-42777805 None:intergenic 55.0%
TGGAGGATAGGGGAGGAAAG+GGG - Chr1:42777045-42777064 None:intergenic 55.0%
TGTCCTTTGTTGGCAGCGGT+AGG + Chr1:42776178-42776197 MsG0180002671.01.T01:intron 55.0%
TTCGCGGTGCGATCTCATGT+TGG - Chr1:42777950-42777969 None:intergenic 55.0%
TTCTACATGACCTGGGAGCC+TGG + Chr1:42772628-42772647 MsG0180002671.01.T01:CDS 55.0%
TTGTGCTTGAGGTTGGGTGG+GGG + Chr1:42776216-42776235 MsG0180002671.01.T01:intron 55.0%
TTTCTCCTTCCCCGCTTGTG+GGG + Chr1:42776400-42776419 MsG0180002671.01.T01:intron 55.0%
TTTGGACCATCTGGACGTCC+CGG + Chr1:42776021-42776040 MsG0180002671.01.T01:intron 55.0%
! AACTAGCAGGGCACTTAGCC+AGG - Chr1:42776127-42776146 None:intergenic 55.0%
! CCTTTTGCGGGTTTGCAGCT+TGG + Chr1:42776323-42776342 MsG0180002671.01.T01:intron 55.0%
! CTCTGGCTTCTTGTTCGTGG+AGG + Chr1:42773308-42773327 MsG0180002671.01.T01:CDS 55.0%
! GGAGGTTACCCTAGGGGTTT+TGG + Chr1:42776426-42776445 MsG0180002671.01.T01:intron 55.0%
! GGTCTCTGGCTTCTTGTTCG+TGG + Chr1:42773305-42773324 MsG0180002671.01.T01:CDS 55.0%
! TAGGGAGTGGGAAGCGTGTT+AGG + Chr1:42775967-42775986 MsG0180002671.01.T01:intron 55.0%
!! ACCCTAGGGGTTTTGGTGTG+GGG + Chr1:42776433-42776452 MsG0180002671.01.T01:intron 55.0%
!! GGAAGGTTCTGGAAGTAGGG+TGG + Chr1:42772349-42772368 MsG0180002671.01.T01:intron 55.0%
AACCTCCAAGCCCCACAAGC+GGG - Chr1:42776413-42776432 None:intergenic 60.0%
CACCCCACACCAAAACCCCT+AGG - Chr1:42776438-42776457 None:intergenic 60.0%
CCACCACATGCTCCTCTCGA+AGG - Chr1:42776073-42776092 None:intergenic 60.0%
CCCACTCCCTAGACCCGTAA+AGG - Chr1:42775958-42775977 None:intergenic 60.0%
CCTGTTCAAAGCCGGGGGTT+TGG + Chr1:42774045-42774064 MsG0180002671.01.T01:CDS 60.0%
GGGCTTGGAGGTTACCCTAG+GGG + Chr1:42776420-42776439 MsG0180002671.01.T01:intron 60.0%
GGGGCTTGGAGGTTACCCTA+GGG + Chr1:42776419-42776438 MsG0180002671.01.T01:intron 60.0%
TGGGGCTTGGAGGTTACCCT+AGG + Chr1:42776418-42776437 MsG0180002671.01.T01:intron 60.0%
! CCTTCGAGAGGAGCATGTGG+TGG + Chr1:42776070-42776089 MsG0180002671.01.T01:intron 60.0%
! CCTTTTCGGCCTGGCTTCCT+CGG + Chr1:42776253-42776272 MsG0180002671.01.T01:intron 60.0%
! CGTCCTTCGAGAGGAGCATG+TGG + Chr1:42776067-42776086 MsG0180002671.01.T01:intron 60.0%
! TGATTTGTGGCCGCCGAGTG+CGG - Chr1:42777809-42777828 None:intergenic 60.0%
! TGGCCTCTACCTTTTCGGCC+TGG + Chr1:42776244-42776263 MsG0180002671.01.T01:intron 60.0%
! TTCTGGTGGCGTCCTTCGAG+AGG + Chr1:42776058-42776077 MsG0180002671.01.T01:intron 60.0%
!! ATGTCTCGTGGTGGTGGTGC+TGG + Chr1:42778201-42778220 MsG0180002671.01.T01:CDS 60.0%
!! CAGCGGTAGGGCGTTTTTGG+TGG + Chr1:42776191-42776210 MsG0180002671.01.T01:intron 60.0%
!! CCAAACCCCCGGCTTTGAAC+AGG - Chr1:42774048-42774067 None:intergenic 60.0%
!! GGAGAGCTGATGGTGGTCTC+TGG + Chr1:42773291-42773310 MsG0180002671.01.T01:CDS 60.0%
!! TGGCAGCGGTAGGGCGTTTT+TGG + Chr1:42776188-42776207 MsG0180002671.01.T01:intron 60.0%
ACCTCCAAGCCCCACAAGCG+GGG - Chr1:42776412-42776431 None:intergenic 65.0%
CATGACCTGGGAGCCTGGTC+AGG + Chr1:42772633-42772652 MsG0180002671.01.T01:CDS 65.0%
CCGAGGAAGCCAGGCCGAAA+AGG - Chr1:42776256-42776275 None:intergenic 65.0%
CGCCCTACCGCTGCCAACAA+AGG - Chr1:42776184-42776203 None:intergenic 65.0%
GAGGTTGGGTGGGGGTTCGT+TGG + Chr1:42776224-42776243 MsG0180002671.01.T01:intron 65.0%
GGGTGTCTTCGGACGACCTC+TGG + Chr1:42776453-42776472 MsG0180002671.01.T01:intron 65.0%
TTCACCTCCGGCACCGCACT+CGG + Chr1:42777793-42777812 MsG0180002671.01.T01:CDS 65.0%
CCAAGCCCCACAAGCGGGGA+AGG - Chr1:42776408-42776427 None:intergenic 70.0%
CCTCACCTGACCAGGCTCCC+AGG - Chr1:42772641-42772660 None:intergenic 70.0%
CCTGGGAGCCTGGTCAGGTG+AGG + Chr1:42772638-42772657 MsG0180002671.01.T01:intron 70.0%
CCTTCCCCGCTTGTGGGGCT+TGG + Chr1:42776405-42776424 MsG0180002671.01.T01:intron 70.0%
TCCCCGCTTGTGGGGCTTGG+AGG + Chr1:42776408-42776427 MsG0180002671.01.T01:intron 70.0%
ACCTCCGGCACCGCACTCGG+CGG + Chr1:42777796-42777815 MsG0180002671.01.T01:CDS 75.0%
! GTGGCCGCCGAGTGCGGTGC+CGG - Chr1:42777803-42777822 None:intergenic 80.0%
!! GCCGCCGAGTGCGGTGCCGG+AGG - Chr1:42777800-42777819 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr1 gene 42771769 42778692 42771769 ID=MsG0180002671.01;Name=MsG0180002671.01
Chr1 mRNA 42771769 42778692 42771769 ID=MsG0180002671.01.T01;Parent=MsG0180002671.01;Name=MsG0180002671.01.T01;_AED=0.61;_eAED=0.78;_QI=0|0|0|0.71|1|1|7|0|560
Chr1 exon 42771769 42772101 42771769 ID=MsG0180002671.01.T01:exon:22021;Parent=MsG0180002671.01.T01
Chr1 exon 42772199 42772262 42772199 ID=MsG0180002671.01.T01:exon:22022;Parent=MsG0180002671.01.T01
Chr1 exon 42772354 42772417 42772354 ID=MsG0180002671.01.T01:exon:22023;Parent=MsG0180002671.01.T01
Chr1 exon 42772522 42772654 42772522 ID=MsG0180002671.01.T01:exon:22024;Parent=MsG0180002671.01.T01
Chr1 exon 42773236 42773358 42773236 ID=MsG0180002671.01.T01:exon:22025;Parent=MsG0180002671.01.T01
Chr1 exon 42774021 42774082 42774021 ID=MsG0180002671.01.T01:exon:22026;Parent=MsG0180002671.01.T01
Chr1 exon 42777789 42778692 42777789 ID=MsG0180002671.01.T01:exon:22027;Parent=MsG0180002671.01.T01
Chr1 CDS 42771769 42772101 42771769 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Chr1 CDS 42772199 42772262 42772199 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Chr1 CDS 42772354 42772417 42772354 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Chr1 CDS 42772522 42772654 42772522 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Chr1 CDS 42773236 42773358 42773236 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Chr1 CDS 42774021 42774082 42774021 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Chr1 CDS 42777789 42778692 42777789 ID=MsG0180002671.01.T01:cds;Parent=MsG0180002671.01.T01
Gene Sequence

>MsG0180002671.01.T01

ATGCAAGGAACAACATGTCTTGTTTCAATAGGTTCTTGGTTTAGGTTTTCAGTGTTGTCATGTTTCTATGATCTGTTTGTATATGCTTTAGTGTTTGTGTTTGGTGTCAGTGCTTTGATTTGGGGTGATGCTAATAATAGCAAGGGTTGTTTGTTGTGTGTTGCTGGTGTTGTTGATACTCCTGACACAAGCACCTCACAAAATTCAAATTCTGCGATAACATATGAAGATAGGCCTGCTTTAACAGTTGGGTCCTATTGGAATTTTATTGATGATTCTGGATCCCTCTCGTCCTATAATGGAATTCCAAACACAACTTACAAGTACATCGAGGATCGGAAGGTGACTCGGCACACTACACCGTTTGAGATAAGGGCGGAGAAAGCATTGAATAGAGGTTCTGGAAGTAGGGTGGCCTTTTATGATGCTATTAATGAACAAATTCAACTTCTTATTTATATAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAATCGATCTCCCGATGGAAGGTATGTTGCAGTCTCAAGCCGTGGCAACTTCTACATGACCTGGGAGCCTGGTCAGGCATACTGGCAGCCACATAACAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTCTGGCTTCTTGTTCGTGGAGGTAGTCTTTTTCTCAGCAAAGGCACAGGGATAACTGAAGAATTTGAGGAAATTCCTGTTCAAAGCCGGGGGTTTGGCATTCTTGATGTCGGAATCTTCACCTCCGGCACCGCACTCGGCGGCCACAAATCACATCACCACCGCTCTGATCACCATCTTCAACCTCTGACCAAGAAACATAAACATGATGTTCTTGATGATCATAGGAAGCAGAAACATGAATGCCTTGACTATGATAAGATTTTTCCATCCAACATGAGATCGCACCGCGAAAAGGGTTCTTCGAAGGGTATTGAGTCTCCAACCACATCCTTCCCTGTCTCCTTCTTGGAACAACAGAGTGATATGTGTGATCTTGATCAATTTCAAGTGGATGGTGCACCACCAGCTATTGACTTATCCAAATATTTGCCTCCAAGATCCCATCAAACCAAAAAGCGCAGCATCAGTGAAAGAAATATGATTGATCGTGAACTTCTGAATGCAGCACATATACTCTTGGATATGTCTCGTGGTGGTGGTGCTGGTAGTGATGATTATCATACACCTAAAAGGCTCAAACTTTCAAGCAATGTTACAGATAATGACAACATCCAGAAACAAGATAGTGGTGACATTGATGAAACACCAGGGACCAAGGTGAAGGGTATTAACAAGAATAACAGAGAAAAGAGCTTGGTGCTGAGATTCAAGAGTCAACCTTCATCATCTAATGACACTGGTGAAACACCAGATACCAAGGTGAAGGTTAATAATAACACTAAGAAGAGTTTGGTGCTGAGATTCAAGATTCCCCATTCATTATCTACAGATAACAAGATCTTGCAGACATCAGAAGGTTGCAGCCAACATGGCTCTATTGACATTGAAGAAATGAAGAAAAATGATGAAGGTGAAACAAGGAGAGAACAGAGTCATAAGGAATTGAAGTTAGAAAAAGTTGTTAGGAATTTTGATTTGAATGAGCTTCCAATGGATGATGTTGCAGATGAATGA

Protein sequence

>MsG0180002671.01.T01

MQGTTCLVSIGSWFRFSVLSCFYDLFVYALVFVFGVSALIWGDANNSKGCLLCVAGVVDTPDTSTSQNSNSAITYEDRPALTVGSYWNFIDDSGSLSSYNGIPNTTYKYIEDRKVTRHTTPFEIRAEKALNRGSGSRVAFYDAINEQIQLLIYITVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYMTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGSLFLSKGTGITEEFEEIPVQSRGFGILDVGIFTSGTALGGHKSHHHRSDHHLQPLTKKHKHDVLDDHRKQKHECLDYDKIFPSNMRSHREKGSSKGIESPTTSFPVSFLEQQSDMCDLDQFQVDGAPPAIDLSKYLPPRSHQTKKRSISERNMIDRELLNAAHILLDMSRGGGAGSDDYHTPKRLKLSSNVTDNDNIQKQDSGDIDETPGTKVKGINKNNREKSLVLRFKSQPSSSNDTGETPDTKVKVNNNTKKSLVLRFKIPHSLSTDNKILQTSEGCSQHGSIDIEEMKKNDEGETRREQSHKELKLEKVVRNFDLNELPMDDVADE*