AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024944.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024944.01.T01 MTR_5g019790 98.444 257 4 0 8 264 194 450 0.0 518
MsG0580024944.01.T01 MTR_1g022030 72.691 249 67 1 13 261 258 505 2.66e-128 374
MsG0580024944.01.T01 MTR_3g031360 38.281 256 136 7 20 261 62 309 3.23e-42 146
MsG0580024944.01.T01 MTR_2g008590 35.433 254 158 4 10 261 1007 1256 1.49e-41 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024944.01.T01 AT4G16580 68.627 255 79 1 10 264 211 464 1.86e-128 372
MsG0580024944.01.T01 AT5G66720 67.451 255 81 2 8 261 161 414 1.49e-123 358
MsG0580024944.01.T01 AT5G66720 68.548 248 76 2 15 261 165 411 1.47e-122 355
MsG0580024944.01.T01 AT4G33500 40.551 254 144 4 7 258 471 719 9.20e-53 182
MsG0580024944.01.T01 AT2G30170 35.849 265 147 8 12 261 42 298 9.80e-47 158
MsG0580024944.01.T01 AT2G30170 34.934 229 127 7 47 261 1 221 5.81e-39 135
MsG0580024944.01.T01 AT2G30170 38.974 195 111 6 12 202 7 197 5.91e-39 136
MsG0580024944.01.T01 AT2G30170 38.974 195 111 6 12 202 42 232 2.39e-38 135
MsG0580024944.01.T01 AT2G30170 38.365 159 91 5 47 202 1 155 5.40e-31 114
MsG0580024944.01.T01 AT2G30170 38.255 149 87 4 12 157 42 188 4.62e-28 107
MsG0580024944.01.T01 AT2G30170 34.641 153 82 4 121 261 12 158 2.33e-22 90.9

Find 78 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTAAATGCTATTAATT+TGG 0.082909 5:-11974724 MsG0580024944.01.T01:CDS
TTGCAGATGGTGTTGGTGGC+TGG 0.202067 5:-11975435 MsG0580024944.01.T01:CDS
CCGCTCCTCGCCAATTGATA+TGG 0.249497 5:+11974624 None:intergenic
TCAGCTGCTGCTCTCGAGTA+TGG 0.284904 5:-11974278 MsG0580024944.01.T01:CDS
CTTAATATACACAATGAAAT+TGG 0.289652 5:+11974171 None:intergenic
GCCTTCTCTAACACCCTTAC+TGG 0.296839 5:+11975319 None:intergenic
TCGAATTGCTCTTGCGGAAT+TGG 0.307860 5:+11975366 None:intergenic
TACTGGATTAAAAGAACCTT+TGG 0.317637 5:+11975336 None:intergenic
CGGAATTGGCTACAAGTTCC+TGG 0.321023 5:+11975380 None:intergenic
GCACTAAATGCTATTAATTT+GGG 0.330419 5:-11974723 MsG0580024944.01.T01:CDS
TCGAGAGCAGCAGCTGAAAA+TGG 0.337984 5:+11974284 None:intergenic
TTGAACCCGCGTTGTTGAAC+AGG 0.339753 5:+11974651 None:intergenic
GGATTCATTGTGATAAGAAA+TGG 0.353829 5:-11974693 MsG0580024944.01.T01:CDS
GCTATTAATTTGGGTGATAG+TGG 0.356777 5:-11974714 MsG0580024944.01.T01:CDS
GTTGTATAATAATGCAAATA+AGG 0.380102 5:+11973989 None:intergenic
CCAGGAGATATCATTGTTGC+TGG 0.394796 5:-11974455 MsG0580024944.01.T01:CDS
AAGCCCTTGAAGATGTTATC+AGG 0.397966 5:-11975544 MsG0580024944.01.T01:CDS
TGCAGATGGTGTTGGTGGCT+GGG 0.399726 5:-11975434 MsG0580024944.01.T01:CDS
CGCTCCTCGCCAATTGATAT+GGG 0.403739 5:+11974625 None:intergenic
GTTCAATTTCCCATATCAAT+TGG 0.409645 5:-11974634 MsG0580024944.01.T01:CDS
ATGATATCTCCTGGAGCAAC+AGG 0.431491 5:+11974464 None:intergenic
GAGTATGGATACCGGTTTGA+TGG 0.432535 5:-11974263 MsG0580024944.01.T01:CDS
GATATTGTTGGAGTGGTTGT+AGG 0.433182 5:-11974398 MsG0580024944.01.T01:CDS
GTTGGTGGCTGGGCAGATGT+TGG 0.436846 5:-11975424 MsG0580024944.01.T01:CDS
AGCGAGCTCTTGACACGAAA+AGG 0.460925 5:-11974313 MsG0580024944.01.T01:CDS
TGATCCTGATAACATCTTCA+AGG 0.461298 5:+11975540 None:intergenic
ACTGGATTAAAAGAACCTTT+GGG 0.468734 5:+11975337 None:intergenic
TGTAAGACACGACAACTGTT+AGG 0.469269 5:+11974225 None:intergenic
ATCATTGTTGCTGGAACAGA+TGG 0.479550 5:-11974446 MsG0580024944.01.T01:CDS
ATATCACTCATTGACTGAGC+TGG 0.489631 5:+11974199 None:intergenic
TTTACAGTACCTGTTGCTCC+AGG 0.495219 5:-11974473 MsG0580024944.01.T01:CDS
ATGTACAACAATGATATTGT+TGG 0.496451 5:-11974410 MsG0580024944.01.T01:CDS
TGCTCAGAAGATAGCAGCAT+TGG 0.497423 5:-11974342 MsG0580024944.01.T01:CDS
CCAGCAACAATGATATCTCC+TGG 0.503201 5:+11974455 None:intergenic
TGTGAAGATGAACAAGCAAT+TGG 0.507426 5:-11975460 MsG0580024944.01.T01:CDS
GATTCATTGTGATAAGAAAT+GGG 0.509981 5:-11974692 MsG0580024944.01.T01:CDS
ATCCAGATAAGGTGGCGACT+GGG 0.519570 5:-11975504 MsG0580024944.01.T01:CDS
CATCCAGATAAGGTGGCGAC+TGG 0.520452 5:-11975505 MsG0580024944.01.T01:CDS
ATCTTCTGAGCAGTTGCTTG+TGG 0.525652 5:+11974353 None:intergenic
CAAGTTTGCCTCCATCAAAC+CGG 0.526235 5:+11974252 None:intergenic
TTAGCTGCCATTCTACACTT+AGG 0.527328 5:-11974055 MsG0580024944.01.T01:three_prime_UTR
GGTGCAACTAGAGCTAGATT+AGG 0.539864 5:-11974377 MsG0580024944.01.T01:CDS
AGAGCTAGGTAGATCACCTT+CGG 0.542202 5:+11974599 None:intergenic
ATTGGTGTTGCAGATGGTGT+TGG 0.543019 5:-11975442 MsG0580024944.01.T01:CDS
GAAGGTGATCTACCTAGCTC+TGG 0.545796 5:-11974597 MsG0580024944.01.T01:CDS
TTCCTCTCGAATTGCTCTTG+CGG 0.547274 5:+11975360 None:intergenic
GGTGTTGCAGATGGTGTTGG+TGG 0.549063 5:-11975439 MsG0580024944.01.T01:CDS
TCCAGATAAGGTGGCGACTG+GGG 0.551906 5:-11975503 MsG0580024944.01.T01:CDS
AAGTATTCCTAAGTGTAGAA+TGG 0.552543 5:+11974048 None:intergenic
AACTTTACCTCGCCAGAGCT+AGG 0.556889 5:+11974585 None:intergenic
GTCGCCACCTTATCTGGATG+TGG 0.559731 5:+11975508 None:intergenic
CTGCTCTCGAGTATGGATAC+CGG 0.564123 5:-11974271 MsG0580024944.01.T01:CDS
GGAATTGGCTACAAGTTCCT+GGG 0.570141 5:+11975381 None:intergenic
TGAACCCGCGTTGTTGAACA+GGG 0.574747 5:+11974652 None:intergenic
TTACCTACCACATCCAGATA+AGG 0.576882 5:-11975515 MsG0580024944.01.T01:CDS
TCCAGTAAGGGTGTTAGAGA+AGG 0.582497 5:-11975320 MsG0580024944.01.T01:CDS
TATCATTGCTCTTATCGATG+AGG 0.593917 5:-11975257 MsG0580024944.01.T01:intron
GCAGATGTTGGTGTTAATGC+AGG 0.595326 5:-11975412 MsG0580024944.01.T01:CDS
CCATATCAATTGGCGAGGAG+CGG 0.596295 5:-11974624 MsG0580024944.01.T01:CDS
CCAGATAAGGTGGCGACTGG+GGG 0.601048 5:-11975502 MsG0580024944.01.T01:CDS
GATCCTGATAACATCTTCAA+GGG 0.603871 5:+11975541 None:intergenic
CAAGCAATTGGTGTTGCAGA+TGG 0.607010 5:-11975448 MsG0580024944.01.T01:CDS
CCACCTTATCTGGATGTGGT+AGG 0.607414 5:+11975512 None:intergenic
CAACAATGATATTGTTGGAG+TGG 0.615629 5:-11974405 MsG0580024944.01.T01:CDS
TTGGCGAGGAGCGGTACCGA+AGG 0.618376 5:-11974615 MsG0580024944.01.T01:CDS
AGTCCCCTGTTCAACAACGC+GGG 0.619635 5:-11974656 MsG0580024944.01.T01:CDS
TAATGCAGGACTGTATGCCC+AGG 0.622814 5:-11975398 MsG0580024944.01.T01:CDS
AGCAATGATACAAACAGTTG+AGG 0.624236 5:+11975270 None:intergenic
AAAATAATAATGCTAAGGAG+AGG 0.638107 5:+11974132 None:intergenic
ATTTCCCATATCAATTGGCG+AGG 0.641059 5:-11974629 MsG0580024944.01.T01:CDS
TATGGATACCGGTTTGATGG+AGG 0.642458 5:-11974260 MsG0580024944.01.T01:CDS
CCTACCACATCCAGATAAGG+TGG 0.648319 5:-11975512 MsG0580024944.01.T01:CDS
TGATCTACCTAGCTCTGGCG+AGG 0.657103 5:-11974592 MsG0580024944.01.T01:intron
TTCCGCAAGAGCAATTCGAG+AGG 0.688045 5:-11975362 MsG0580024944.01.T01:CDS
GCAATTCGAGAGGAACCCAA+AGG 0.688593 5:-11975352 MsG0580024944.01.T01:CDS
GTGTATATTAAGATGCTATG+CGG 0.703785 5:-11974160 MsG0580024944.01.T01:three_prime_UTR
AAGTCCCCTGTTCAACAACG+CGG 0.711155 5:-11974657 MsG0580024944.01.T01:CDS
GAACCCGCGTTGTTGAACAG+GGG 0.730041 5:+11974653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAATAATAATGCTA+AGG + Chr5:11975439-11975458 None:intergenic 10.0%
!!! TATTTTTTTTCTCTAGAAAA+AGG - Chr5:11975539-11975558 MsG0580024944.01.T01:CDS 15.0%
!! AAAGAATGAAAATTAATCAG+TGG + Chr5:11974799-11974818 None:intergenic 20.0%
!! CTTAATATACACAATGAAAT+TGG + Chr5:11975395-11975414 None:intergenic 20.0%
!! GTTGTATAATAATGCAAATA+AGG + Chr5:11975577-11975596 None:intergenic 20.0%
!! TATTTAATTGATTGAGTAAC+AGG + Chr5:11974619-11974638 None:intergenic 20.0%
!!! TGATTAATTTTCATTCTTTG+TGG - Chr5:11974800-11974819 MsG0580024944.01.T01:intron 20.0%
! AAAATAATAATGCTAAGGAG+AGG + Chr5:11975434-11975453 None:intergenic 25.0%
! AAGTTTATCAATTTATGTGC+AGG - Chr5:11975065-11975084 MsG0580024944.01.T01:intron 25.0%
! AATACAGCTAAAATACCAAT+CGG + Chr5:11974704-11974723 None:intergenic 25.0%
! ATGTACAACAATGATATTGT+TGG - Chr5:11975153-11975172 MsG0580024944.01.T01:intron 25.0%
! CTGAAAATACAAGTATTCAA+AGG + Chr5:11973983-11974002 None:intergenic 25.0%
! GACATTGTACTTAAAAACTT+AGG + Chr5:11974682-11974701 None:intergenic 25.0%
! GATTCATTGTGATAAGAAAT+GGG - Chr5:11974871-11974890 MsG0580024944.01.T01:intron 25.0%
! GCACTAAATGCTATTAATTT+GGG - Chr5:11974840-11974859 MsG0580024944.01.T01:intron 25.0%
!! AATTTTGTACAATTCATGTC+TGG - Chr5:11974466-11974485 MsG0580024944.01.T01:CDS 25.0%
!! TCTCTAGAAAAAGGTTATTA+TGG - Chr5:11975548-11975567 MsG0580024944.01.T01:CDS 25.0%
!! TTGTTTTCTTTTCATCAACA+TGG - Chr5:11974442-11974461 MsG0580024944.01.T01:CDS 25.0%
AAGTATTCCTAAGTGTAGAA+TGG + Chr5:11975518-11975537 None:intergenic 30.0%
AATTAATAGCATTTAGTGCC+TGG + Chr5:11974839-11974858 None:intergenic 30.0%
ACTGGATTAAAAGAACCTTT+GGG + Chr5:11974229-11974248 None:intergenic 30.0%
ATTCTTTGTGGTTGTTTACT+TGG - Chr5:11974812-11974831 MsG0580024944.01.T01:intron 30.0%
GGATTCATTGTGATAAGAAA+TGG - Chr5:11974870-11974889 MsG0580024944.01.T01:intron 30.0%
GGCACTAAATGCTATTAATT+TGG - Chr5:11974839-11974858 MsG0580024944.01.T01:intron 30.0%
GTACTTAAAAACTTAGGACT+CGG + Chr5:11974676-11974695 None:intergenic 30.0%
GTGTATATTAAGATGCTATG+CGG - Chr5:11975403-11975422 MsG0580024944.01.T01:CDS 30.0%
GTTCAATTTCCCATATCAAT+TGG - Chr5:11974929-11974948 MsG0580024944.01.T01:intron 30.0%
TACTGGATTAAAAGAACCTT+TGG + Chr5:11974230-11974249 None:intergenic 30.0%
! AAGGTTCTTTTAATCCAGTA+AGG - Chr5:11974230-11974249 MsG0580024944.01.T01:CDS 30.0%
! AGGTTCTTTTAATCCAGTAA+GGG - Chr5:11974231-11974250 MsG0580024944.01.T01:CDS 30.0%
!! TTTTAAGTACAATGTCCGAT+TGG - Chr5:11974686-11974705 MsG0580024944.01.T01:CDS 30.0%
!!! TTCTCCAAACTTCTTGTTTT+GGG - Chr5:11974530-11974549 MsG0580024944.01.T01:intron 30.0%
AAACTTCAATCTCCATTGCT+AGG + Chr5:11975023-11975042 None:intergenic 35.0%
ACAAACTAGACACTTGTTTG+TGG + Chr5:11974592-11974611 None:intergenic 35.0%
AGAATGCATATCAAGACTCA+TGG + Chr5:11974511-11974530 None:intergenic 35.0%
AGCAATGATACAAACAGTTG+AGG + Chr5:11974296-11974315 None:intergenic 35.0%
CAACAATGATATTGTTGGAG+TGG - Chr5:11975158-11975177 MsG0580024944.01.T01:intron 35.0%
GATCCTGATAACATCTTCAA+GGG + Chr5:11974025-11974044 None:intergenic 35.0%
TAAAACCACAATCCTAGCAA+TGG - Chr5:11975008-11975027 MsG0580024944.01.T01:intron 35.0%
TATCATTGCTCTTATCGATG+AGG - Chr5:11974306-11974325 MsG0580024944.01.T01:CDS 35.0%
TATCCCCAAAACAAGAAGTT+TGG + Chr5:11974537-11974556 None:intergenic 35.0%
TGATCCTGATAACATCTTCA+AGG + Chr5:11974026-11974045 None:intergenic 35.0%
TGTGAAGATGAACAAGCAAT+TGG - Chr5:11974103-11974122 MsG0580024944.01.T01:three_prime_UTR 35.0%
TTCTCTACAGTCTACAAAAC+TGG - Chr5:11974560-11974579 MsG0580024944.01.T01:intron 35.0%
! GCTATTAATTTGGGTGATAG+TGG - Chr5:11974849-11974868 MsG0580024944.01.T01:intron 35.0%
!! CTTCTCCAAACTTCTTGTTT+TGG - Chr5:11974529-11974548 MsG0580024944.01.T01:intron 35.0%
!!! TCTCCAAACTTCTTGTTTTG+GGG - Chr5:11974531-11974550 MsG0580024944.01.T01:intron 35.0%
AAGCCCTTGAAGATGTTATC+AGG - Chr5:11974019-11974038 MsG0580024944.01.T01:three_prime_UTR 40.0%
AATCTCCATTGCTAGGATTG+TGG + Chr5:11975016-11975035 None:intergenic 40.0%
ATCATTGTTGCTGGAACAGA+TGG - Chr5:11975117-11975136 MsG0580024944.01.T01:intron 40.0%
ATTTCCCATATCAATTGGCG+AGG - Chr5:11974934-11974953 MsG0580024944.01.T01:intron 40.0%
GAAGGCTCACTCAAAAACAA+AGG - Chr5:11974261-11974280 MsG0580024944.01.T01:CDS 40.0%
GATATTGTTGGAGTGGTTGT+AGG - Chr5:11975165-11975184 MsG0580024944.01.T01:intron 40.0%
GCTGTATTTCGATTCACTGA+AGG - Chr5:11974716-11974735 MsG0580024944.01.T01:CDS 40.0%
TAGACACTTGTTTGTGGTAC+AGG + Chr5:11974586-11974605 None:intergenic 40.0%
TGTAAGACACGACAACTGTT+AGG + Chr5:11975341-11975360 None:intergenic 40.0%
TTACCTACCACATCCAGATA+AGG - Chr5:11974048-11974067 MsG0580024944.01.T01:three_prime_UTR 40.0%
TTAGCTGCCATTCTACACTT+AGG - Chr5:11975508-11975527 MsG0580024944.01.T01:CDS 40.0%
! ATATCACTCATTGACTGAGC+TGG + Chr5:11975367-11975386 None:intergenic 40.0%
!! AAGTCAGTTTTGTCGATTGC+AGG - Chr5:11974364-11974383 MsG0580024944.01.T01:CDS 40.0%
!! GTTTTGTCGATTGCAGGTTA+AGG - Chr5:11974370-11974389 MsG0580024944.01.T01:CDS 40.0%
AGAGCTAGGTAGATCACCTT+CGG + Chr5:11974967-11974986 None:intergenic 45.0%
AGCCTTTCTCGATTCACTGA+AGG - Chr5:11974750-11974769 MsG0580024944.01.T01:intron 45.0%
ATCTTCTGAGCAGTTGCTTG+TGG + Chr5:11975213-11975232 None:intergenic 45.0%
ATGATATCTCCTGGAGCAAC+AGG + Chr5:11975102-11975121 None:intergenic 45.0%
CAAGTTTGCCTCCATCAAAC+CGG + Chr5:11975314-11975333 None:intergenic 45.0%
CCAGCAACAATGATATCTCC+TGG + Chr5:11975111-11975130 None:intergenic 45.0%
CCAGGAGATATCATTGTTGC+TGG - Chr5:11975108-11975127 MsG0580024944.01.T01:intron 45.0%
GCTTCATGCATACTGAACAC+TGG - Chr5:11974414-11974433 MsG0580024944.01.T01:CDS 45.0%
GGAATTGGCTACAAGTTCCT+GGG + Chr5:11974185-11974204 None:intergenic 45.0%
GGTGCAACTAGAGCTAGATT+AGG - Chr5:11975186-11975205 MsG0580024944.01.T01:intron 45.0%
TCGAATTGCTCTTGCGGAAT+TGG + Chr5:11974200-11974219 None:intergenic 45.0%
TGCCTTCAGTGAATCGAGAA+AGG + Chr5:11974755-11974774 None:intergenic 45.0%
TGCTCAGAAGATAGCAGCAT+TGG - Chr5:11975221-11975240 MsG0580024944.01.T01:intron 45.0%
TGTGGTTGTTTACTTGGTCC+AGG - Chr5:11974818-11974837 MsG0580024944.01.T01:intron 45.0%
TTCCTCTCGAATTGCTCTTG+CGG + Chr5:11974206-11974225 None:intergenic 45.0%
TTTACAGTACCTGTTGCTCC+AGG - Chr5:11975090-11975109 MsG0580024944.01.T01:intron 45.0%
! TCACTCAAAAACAAAGGCGC+TGG - Chr5:11974267-11974286 MsG0580024944.01.T01:CDS 45.0%
!! ATTGGTGTTGCAGATGGTGT+TGG - Chr5:11974121-11974140 MsG0580024944.01.T01:three_prime_UTR 45.0%
!! CAAGCAATTGGTGTTGCAGA+TGG - Chr5:11974115-11974134 MsG0580024944.01.T01:three_prime_UTR 45.0%
!! CACTCAAAAACAAAGGCGCT+GGG - Chr5:11974268-11974287 MsG0580024944.01.T01:CDS 45.0%
!! GAGTATGGATACCGGTTTGA+TGG - Chr5:11975300-11975319 MsG0580024944.01.T01:CDS 45.0%
!! GCAGATGTTGGTGTTAATGC+AGG - Chr5:11974151-11974170 MsG0580024944.01.T01:three_prime_UTR 45.0%
!! TATGGATACCGGTTTGATGG+AGG - Chr5:11975303-11975322 MsG0580024944.01.T01:CDS 45.0%
!! TCCAGTAAGGGTGTTAGAGA+AGG - Chr5:11974243-11974262 MsG0580024944.01.T01:CDS 45.0%
AACTTTACCTCGCCAGAGCT+AGG + Chr5:11974981-11975000 None:intergenic 50.0%
AAGTCCCCTGTTCAACAACG+CGG - Chr5:11974906-11974925 MsG0580024944.01.T01:intron 50.0%
AGCGAGCTCTTGACACGAAA+AGG - Chr5:11975250-11975269 MsG0580024944.01.T01:intron 50.0%
ATCCAGATAAGGTGGCGACT+GGG - Chr5:11974059-11974078 MsG0580024944.01.T01:three_prime_UTR 50.0%
CCACCTTATCTGGATGTGGT+AGG + Chr5:11974054-11974073 None:intergenic 50.0%
CCATATCAATTGGCGAGGAG+CGG - Chr5:11974939-11974958 MsG0580024944.01.T01:intron 50.0%
CCTACCACATCCAGATAAGG+TGG - Chr5:11974051-11974070 MsG0580024944.01.T01:three_prime_UTR 50.0%
CGCTCCTCGCCAATTGATAT+GGG + Chr5:11974941-11974960 None:intergenic 50.0%
CGGAATTGGCTACAAGTTCC+TGG + Chr5:11974186-11974205 None:intergenic 50.0%
CTGCTCTCGAGTATGGATAC+CGG - Chr5:11975292-11975311 MsG0580024944.01.T01:CDS 50.0%
GAAGGTGATCTACCTAGCTC+TGG - Chr5:11974966-11974985 MsG0580024944.01.T01:intron 50.0%
GATTCACTGAAGGCAGCACA+AGG - Chr5:11974726-11974745 MsG0580024944.01.T01:CDS 50.0%
GCAATTCGAGAGGAACCCAA+AGG - Chr5:11974211-11974230 MsG0580024944.01.T01:CDS 50.0%
GCCTTCTCTAACACCCTTAC+TGG + Chr5:11974247-11974266 None:intergenic 50.0%
TAATGCAGGACTGTATGCCC+AGG - Chr5:11974165-11974184 MsG0580024944.01.T01:three_prime_UTR 50.0%
TCGAGAGCAGCAGCTGAAAA+TGG + Chr5:11975282-11975301 None:intergenic 50.0%
TGAACCCGCGTTGTTGAACA+GGG + Chr5:11974914-11974933 None:intergenic 50.0%
TTCCGCAAGAGCAATTCGAG+AGG - Chr5:11974201-11974220 MsG0580024944.01.T01:exon 50.0%
TTGAACCCGCGTTGTTGAAC+AGG + Chr5:11974915-11974934 None:intergenic 50.0%
AGTCCCCTGTTCAACAACGC+GGG - Chr5:11974907-11974926 MsG0580024944.01.T01:intron 55.0%
CATCCAGATAAGGTGGCGAC+TGG - Chr5:11974058-11974077 MsG0580024944.01.T01:three_prime_UTR 55.0%
CCGCTCCTCGCCAATTGATA+TGG + Chr5:11974942-11974961 None:intergenic 55.0%
GAACCCGCGTTGTTGAACAG+GGG + Chr5:11974913-11974932 None:intergenic 55.0%
GTCGCCACCTTATCTGGATG+TGG + Chr5:11974058-11974077 None:intergenic 55.0%
TCAGCTGCTGCTCTCGAGTA+TGG - Chr5:11975285-11975304 MsG0580024944.01.T01:CDS 55.0%
TCCAGATAAGGTGGCGACTG+GGG - Chr5:11974060-11974079 MsG0580024944.01.T01:three_prime_UTR 55.0%
! GGTGTTGCAGATGGTGTTGG+TGG - Chr5:11974124-11974143 MsG0580024944.01.T01:three_prime_UTR 55.0%
!! TGATCTACCTAGCTCTGGCG+AGG - Chr5:11974971-11974990 MsG0580024944.01.T01:intron 55.0%
!! TGCAGATGGTGTTGGTGGCT+GGG - Chr5:11974129-11974148 MsG0580024944.01.T01:three_prime_UTR 55.0%
!! TTGCAGATGGTGTTGGTGGC+TGG - Chr5:11974128-11974147 MsG0580024944.01.T01:three_prime_UTR 55.0%
CCAGATAAGGTGGCGACTGG+GGG - Chr5:11974061-11974080 MsG0580024944.01.T01:three_prime_UTR 60.0%
!! GTTGGTGGCTGGGCAGATGT+TGG - Chr5:11974139-11974158 MsG0580024944.01.T01:three_prime_UTR 60.0%
CCCCCAGTCGCCACCTTATC+TGG + Chr5:11974064-11974083 None:intergenic 65.0%
TAAGGTGGCGACTGGGGGAG+AGG - Chr5:11974066-11974085 MsG0580024944.01.T01:three_prime_UTR 65.0%
! TTGGCGAGGAGCGGTACCGA+AGG - Chr5:11974948-11974967 MsG0580024944.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 11973983 11975602 11973983 ID=MsG0580024944.01;Name=MsG0580024944.01
Chr5 mRNA 11973983 11975602 11973983 ID=MsG0580024944.01.T01;Parent=MsG0580024944.01;Name=MsG0580024944.01.T01;_AED=0.49;_eAED=0.50;_QI=0|1|0.66|1|1|1|3|219|264
Chr5 exon 11973983 11974498 11973983 ID=MsG0580024944.01.T01:exon:19986;Parent=MsG0580024944.01.T01
Chr5 exon 11974593 11974745 11974593 ID=MsG0580024944.01.T01:exon:19985;Parent=MsG0580024944.01.T01
Chr5 exon 11975258 11975602 11975258 ID=MsG0580024944.01.T01:exon:19984;Parent=MsG0580024944.01.T01
Chr5 CDS 11975258 11975602 11975258 ID=MsG0580024944.01.T01:cds;Parent=MsG0580024944.01.T01
Chr5 CDS 11974593 11974745 11974593 ID=MsG0580024944.01.T01:cds;Parent=MsG0580024944.01.T01
Chr5 CDS 11974202 11974498 11974202 ID=MsG0580024944.01.T01:cds;Parent=MsG0580024944.01.T01
Chr5 three_prime_UTR 11973983 11974201 11973983 ID=MsG0580024944.01.T01:three_prime_utr;Parent=MsG0580024944.01.T01
Gene Sequence

>MsG0580024944.01.T01

TTGAATACTTGTATTTTCAGAACTACTCTTCATCGCAAGCCCTTGAAGATGTTATCAGGATCATGTTACCTACCACATCCAGATAAGGTGGCGACTGGGGGAGAGGATGCTCATTTTATTTGTGAAGATGAACAAGCAATTGGTGTTGCAGATGGTGTTGGTGGCTGGGCAGATGTTGGTGTTAATGCAGGACTGTATGCCCAGGAACTTGTAGCCAATTCCGCAAGAGCAATTCGAGAGGAACCCAAAGGTTCTTTTAATCCAGTAAGGGTGTTAGAGAAGGCTCACTCAAAAACAAAGGCGCTGGGTTCCTCAACTGTTTGTATCATTGCTCTTATCGATGAGGCACTAAATGCTATTAATTTGGGTGATAGTGGATTCATTGTGATAAGAAATGGGAGCGTGATTTTCAAGTCCCCTGTTCAACAACGCGGGTTCAATTTCCCATATCAATTGGCGAGGAGCGGTACCGAAGGTGATCTACCTAGCTCTGGCGAGGTTTTTACAGTACCTGTTGCTCCAGGAGATATCATTGTTGCTGGAACAGATGGTTTATTTGACAACATGTACAACAATGATATTGTTGGAGTGGTTGTAGGTGCAACTAGAGCTAGATTAGGACCACAAGCAACTGCTCAGAAGATAGCAGCATTGGCTCGTCAGCGAGCTCTTGACACGAAAAGGCAGTCACCATTTTCAGCTGCTGCTCTCGAGTATGGATACCGGTTTGATGGAGGCAAACTTGACGACCTAACAGTTGTCGTGTCTTACATATCCAGCTCAGTCAATGAGTGA

Protein sequence

>MsG0580024944.01.T01

LNTCIFRTTLHRKPLKMLSGSCYLPHPDKVATGGEDAHFICEDEQAIGVADGVGGWADVGVNAGLYAQELVANSARAIREEPKGSFNPVRVLEKAHSKTKALGSSTVCIIALIDEALNAINLGDSGFIVIRNGSVIFKSPVQQRGFNFPYQLARSGTEGDLPSSGEVFTVPVAPGDIIVAGTDGLFDNMYNNDIVGVVVGATRARLGPQATAQKIAALARQRALDTKRQSPFSAAALEYGYRFDGGKLDDLTVVVSYISSSVNE*