AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008227.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008227.01.T01 MTR_2g036690 96.386 166 6 0 19 184 77 242 2.76e-111 317
MsG0280008227.01.T01 MTR_2g005900 71.875 160 45 0 24 183 64 223 5.63e-78 232
MsG0280008227.01.T01 MTR_2g005900 39.560 91 50 2 95 181 54 143 3.49e-11 60.1
MsG0280008227.01.T01 MTR_2g036690 98.020 101 2 0 22 122 80 180 3.19e-65 199
MsG0280008227.01.T01 MTR_7g109850 40.559 143 83 2 31 172 67 208 1.29e-24 95.9
MsG0280008227.01.T01 MTR_8g038785 53.731 67 31 0 33 99 69 135 7.61e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008227.01.T01 AT4G25910 82.166 157 27 1 29 184 80 236 1.27e-90 265
MsG0280008227.01.T01 AT5G49940 74.691 162 39 1 24 183 74 235 1.02e-80 239
MsG0280008227.01.T01 AT5G49940 72.277 101 26 1 24 122 74 174 5.70e-44 144
MsG0280008227.01.T01 AT5G49940 45.946 74 35 2 114 183 85 157 1.23e-11 60.8
MsG0280008227.01.T01 AT4G01940 35.263 190 103 6 1 172 36 223 2.62e-25 98.2

Find 43 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCAACCTCCAAGATTTC+TGG 0.161640 2:+27458604 None:intergenic
GAAATTAGACCATATCTTAT+TGG 0.195631 2:-27458171 MsG0280008227.01.T01:CDS
TTCTGCATTAGCCTTCTAAA+TGG 0.296874 2:-27457833 MsG0280008227.01.T01:three_prime_UTR
AGACCATATCTTATTGGAAC+TGG 0.334639 2:-27458165 MsG0280008227.01.T01:CDS
CCAACCTGATTCCATTTAGA+AGG 0.345253 2:+27457822 None:intergenic
AGAAAATGTAGAGAAAGTTT+TGG 0.348094 2:-27458788 MsG0280008227.01.T01:CDS
CACAAGCTCCTTGTAGTTTG+AGG 0.369342 2:+27458692 None:intergenic
ATGAAGTATTCAACAGTCAT+TGG 0.369540 2:-27457864 MsG0280008227.01.T01:three_prime_UTR
CGATAAGATTCCAGAAATCT+TGG 0.378676 2:-27458614 MsG0280008227.01.T01:CDS
TTAGCCTTCTAAATGGAATC+AGG 0.393807 2:-27457826 MsG0280008227.01.T01:three_prime_UTR
TCAGTGTCAGTTACTCTAGT+AGG 0.409608 2:-27457891 MsG0280008227.01.T01:three_prime_UTR
ATGATTACATCATTAAAGTT+CGG 0.426909 2:-27458113 MsG0280008227.01.T01:CDS
CGGCTAAGTGGACCGGCAGC+AGG 0.440486 2:-27458093 MsG0280008227.01.T01:CDS
AGCTGCACAGCAGCAATAGA+AGG 0.442231 2:+27458021 None:intergenic
TGAAGTAAGGCCTGGTTTGA+TGG 0.459751 2:-27458764 MsG0280008227.01.T01:CDS
ATCATTAAAGTTCGGCTAAG+TGG 0.471253 2:-27458105 MsG0280008227.01.T01:CDS
CTCAACCATGACATTGAAGA+TGG 0.471530 2:-27458656 MsG0280008227.01.T01:CDS
ATGAATTGTATTAGCAATCA+AGG 0.474582 2:-27460509 MsG0280008227.01.T01:intron
TATAATCATGTGCATGAGTT+GGG 0.474826 2:-27460539 MsG0280008227.01.T01:CDS
CTATAATCATGTGCATGAGT+TGG 0.475276 2:-27460540 MsG0280008227.01.T01:CDS
CTCAAACTACAAGGAGCTTG+TGG 0.520248 2:-27458691 MsG0280008227.01.T01:CDS
GACCATATCTTATTGGAACT+GGG 0.523059 2:-27458164 MsG0280008227.01.T01:CDS
GATCCCCATCTTCAATGTCA+TGG 0.540108 2:+27458651 None:intergenic
CCTCCATCAGCCATCAAACC+AGG 0.556402 2:+27458754 None:intergenic
GTTGTTATCCTCAAACTACA+AGG 0.559144 2:-27458700 MsG0280008227.01.T01:CDS
TAAAGTTCGGCTAAGTGGAC+CGG 0.560824 2:-27458100 MsG0280008227.01.T01:CDS
GTGGCATTGCATGAGATAGA+TGG 0.565280 2:-27458727 MsG0280008227.01.T01:CDS
TTCAATGTCATGGTTGAGCT+AGG 0.567639 2:+27458661 None:intergenic
AGTATTCAACAGTCATTGGA+AGG 0.570929 2:-27457860 MsG0280008227.01.T01:three_prime_UTR
TCAACCATGACATTGAAGAT+GGG 0.574515 2:-27458655 MsG0280008227.01.T01:CDS
CCTTCTAAATGGAATCAGGT+TGG 0.577398 2:-27457822 MsG0280008227.01.T01:three_prime_UTR
CAGATACTAGATACTGAGAC+TGG 0.580123 2:-27458583 MsG0280008227.01.T01:CDS
TAAGATTCCAGAAATCTTGG+AGG 0.581548 2:-27458611 MsG0280008227.01.T01:CDS
AACAAGAAAACTAATACGAA+TGG 0.590876 2:+27457781 None:intergenic
CTGGTTTGATGGCTGATGGA+GGG 0.590897 2:-27458753 MsG0280008227.01.T01:CDS
CCTGGTTTGATGGCTGATGG+AGG 0.592266 2:-27458754 MsG0280008227.01.T01:CDS
GTCAGTGGCAGGACACATCT+CGG 0.597217 2:+27458814 None:intergenic
ACCATATCTTATTGGAACTG+GGG 0.604069 2:-27458163 MsG0280008227.01.T01:CDS
CCATATCTTATTGGAACTGG+GGG 0.604476 2:-27458162 MsG0280008227.01.T01:CDS
GATGGCTGATGGAGGGAATG+TGG 0.613469 2:-27458746 MsG0280008227.01.T01:CDS
AGGCCTGGTTTGATGGCTGA+TGG 0.614038 2:-27458757 MsG0280008227.01.T01:CDS
CAACCATGACATTGAAGATG+GGG 0.616574 2:-27458654 MsG0280008227.01.T01:CDS
ACTGTCATAACTCCTGCTGC+CGG 0.622897 2:+27458081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAAACAAAATAG+AGG - Chr2:27458178-27458197 MsG0280008227.01.T01:CDS 10.0%
!! AAAAAATTAAACAAAATAGA+GGG - Chr2:27458179-27458198 MsG0280008227.01.T01:CDS 10.0%
!!! ATAAAATTATTCATTTTTTC+AGG - Chr2:27460099-27460118 MsG0280008227.01.T01:intron 10.0%
!!! CAATATTTTATTTTACAAAA+AGG - Chr2:27458448-27458467 MsG0280008227.01.T01:intron 10.0%
!!! GTTAAATTTTAATTAATTCT+TGG - Chr2:27459066-27459085 MsG0280008227.01.T01:intron 10.0%
!!! TATTTTTTTTTTTCTTTCTT+TGG - Chr2:27458040-27458059 MsG0280008227.01.T01:CDS 10.0%
!! AAAAATAATACGAATACAAA+TGG + Chr2:27460547-27460566 None:intergenic 15.0%
!! AAAAATTAAACAAAATAGAG+GGG - Chr2:27458180-27458199 MsG0280008227.01.T01:CDS 15.0%
!! AAAATCATGAATTCATATTA+AGG + Chr2:27459184-27459203 None:intergenic 15.0%
!! TTTGTTCAGAAATTAATTTA+TGG + Chr2:27458117-27458136 None:intergenic 15.0%
!!! AATTAATTCTTGGATTTTAT+TGG - Chr2:27459076-27459095 MsG0280008227.01.T01:intron 15.0%
!!! ATTAATATTAAGCAAGTTTT+CGG - Chr2:27458961-27458980 MsG0280008227.01.T01:intron 15.0%
!!! TATACACTTATAAGATATTT+TGG - Chr2:27458155-27458174 MsG0280008227.01.T01:CDS 15.0%
!!! TTTTAGATGATATAAGTTTT+GGG + Chr2:27458287-27458306 None:intergenic 15.0%
!! AAAAAAAACAAGAAACATGA+AGG + Chr2:27458674-27458693 None:intergenic 20.0%
!! ATGATTACATCATTAAAGTT+CGG - Chr2:27460188-27460207 MsG0280008227.01.T01:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG + Chr2:27459813-27459832 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG + Chr2:27458783-27458802 None:intergenic 20.0%
!!! ATTGATTAATTTGTGATCTT+AGG - Chr2:27457864-27457883 MsG0280008227.01.T01:three_prime_UTR 20.0%
!!! GATATATGTGAGTTTTTTTT+TGG - Chr2:27458836-27458855 MsG0280008227.01.T01:intron 20.0%
!!! GTGTATGTTATAATTTTAGT+TGG - Chr2:27457990-27458009 MsG0280008227.01.T01:three_prime_UTR 20.0%
!!! GTTTTAGATGATATAAGTTT+TGG + Chr2:27458288-27458307 None:intergenic 20.0%
!!! TTAATATTAAGCAAGTTTTC+GGG - Chr2:27458962-27458981 MsG0280008227.01.T01:intron 20.0%
!!! TTGTATTCGTATTATTTTTC+TGG - Chr2:27460548-27460567 MsG0280008227.01.T01:CDS 20.0%
! AACAAGAAAACTAATACGAA+TGG + Chr2:27460523-27460542 None:intergenic 25.0%
! AATTTCTCTACAAACATGTA+AGG + Chr2:27459982-27460001 None:intergenic 25.0%
! ATGAATTGTATTAGCAATCA+AGG - Chr2:27457792-27457811 MsG0280008227.01.T01:three_prime_UTR 25.0%
! ATTATTCACACTCAAATGTT+GGG - Chr2:27458525-27458544 MsG0280008227.01.T01:intron 25.0%
! GAAATTAGACCATATCTTAT+TGG - Chr2:27460130-27460149 MsG0280008227.01.T01:intron 25.0%
! TATTATTCACACTCAAATGT+TGG - Chr2:27458524-27458543 MsG0280008227.01.T01:intron 25.0%
!! AGAAAATGTAGAGAAAGTTT+TGG - Chr2:27459513-27459532 MsG0280008227.01.T01:intron 25.0%
!! GAACACATAAATAAGTGTTT+TGG + Chr2:27458095-27458114 None:intergenic 25.0%
!!! GTGTCAATTGTTTTAGTTTT+TGG + Chr2:27458429-27458448 None:intergenic 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG + Chr2:27458581-27458600 None:intergenic 25.0%
AAATGTGTGGACAATAATCT+AGG + Chr2:27458624-27458643 None:intergenic 30.0%
AAGCTAATGACTAATGAGTT+AGG - Chr2:27457908-27457927 MsG0280008227.01.T01:three_prime_UTR 30.0%
ACTAAGTTGTTTATCCAAAC+AGG - Chr2:27459922-27459941 MsG0280008227.01.T01:intron 30.0%
AGCTAATGACTAATGAGTTA+GGG - Chr2:27457909-27457928 MsG0280008227.01.T01:three_prime_UTR 30.0%
ATCCTTTCCAACACAATAAA+GGG + Chr2:27458019-27458038 None:intergenic 30.0%
ATTCTGTGACTCTTATAGTA+GGG + Chr2:27458239-27458258 None:intergenic 30.0%
CTTAAAGAGACAAAAATGTG+TGG + Chr2:27458637-27458656 None:intergenic 30.0%
TATAATCATGTGCATGAGTT+GGG - Chr2:27457762-27457781 MsG0280008227.01.T01:three_prime_UTR 30.0%
TCATTCTTATGATAGCTTTC+TGG - Chr2:27458489-27458508 MsG0280008227.01.T01:intron 30.0%
TCTTTCTTTGGTACAAAGAA+AGG - Chr2:27458052-27458071 MsG0280008227.01.T01:CDS 30.0%
TTCTTGAAGAATCTTATAGC+AGG - Chr2:27458889-27458908 MsG0280008227.01.T01:intron 30.0%
! ACGCTATTCTTGAGATTTTA+TGG + Chr2:27459867-27459886 None:intergenic 30.0%
! ATGAAGTATTCAACAGTCAT+TGG - Chr2:27460437-27460456 MsG0280008227.01.T01:intron 30.0%
! CACACATTTTTGTCTCTTTA+AGG - Chr2:27458635-27458654 MsG0280008227.01.T01:CDS 30.0%
! CGCTATTCTTGAGATTTTAT+GGG + Chr2:27459866-27459885 None:intergenic 30.0%
! TACACTTTCGACATTTTCTT+CGG + Chr2:27459755-27459774 None:intergenic 30.0%
!! AAGAAGTATTTGTGCTTCAT+AGG + Chr2:27458718-27458737 None:intergenic 30.0%
!! GCTTTTATGTTTTGTTACGA+AGG + Chr2:27459838-27459857 None:intergenic 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG - Chr2:27459524-27459543 MsG0280008227.01.T01:intron 30.0%
!!! CATTGCAATGTTTTTTTTGC+AGG - Chr2:27459451-27459470 MsG0280008227.01.T01:intron 30.0%
ACCATATCTTATTGGAACTG+GGG - Chr2:27460138-27460157 MsG0280008227.01.T01:intron 35.0%
AGACCATATCTTATTGGAAC+TGG - Chr2:27460136-27460155 MsG0280008227.01.T01:intron 35.0%
AGGGGCTTCATTAAGAAAAT+GGG - Chr2:27458198-27458217 MsG0280008227.01.T01:intron 35.0%
AGTATTCAACAGTCATTGGA+AGG - Chr2:27460441-27460460 MsG0280008227.01.T01:intron 35.0%
ATAGAACTGAAACACAGAGT+TGG + Chr2:27458315-27458334 None:intergenic 35.0%
ATCATTAAAGTTCGGCTAAG+TGG - Chr2:27460196-27460215 MsG0280008227.01.T01:intron 35.0%
CATCCTTTCCAACACAATAA+AGG + Chr2:27458020-27458039 None:intergenic 35.0%
CGATAAGATTCCAGAAATCT+TGG - Chr2:27459687-27459706 MsG0280008227.01.T01:intron 35.0%
CTATAATCATGTGCATGAGT+TGG - Chr2:27457761-27457780 MsG0280008227.01.T01:three_prime_UTR 35.0%
GAAAACAGTTTGACCTGATA+CGG - Chr2:27459889-27459908 MsG0280008227.01.T01:intron 35.0%
GACCATATCTTATTGGAACT+GGG - Chr2:27460137-27460156 MsG0280008227.01.T01:intron 35.0%
GATTCTGTGACTCTTATAGT+AGG + Chr2:27458240-27458259 None:intergenic 35.0%
GCTAATGACTAATGAGTTAG+GGG - Chr2:27457910-27457929 MsG0280008227.01.T01:three_prime_UTR 35.0%
GTGCTTCATAGATTGCAATT+TGG + Chr2:27459208-27459227 None:intergenic 35.0%
GTTGTTATCCTCAAACTACA+AGG - Chr2:27459601-27459620 MsG0280008227.01.T01:intron 35.0%
TAAGATTCCAGAAATCTTGG+AGG - Chr2:27459690-27459709 MsG0280008227.01.T01:intron 35.0%
TATCGTATGAAACTCAGACA+CGG + Chr2:27458820-27458839 None:intergenic 35.0%
TCAACCATGACATTGAAGAT+GGG - Chr2:27459646-27459665 MsG0280008227.01.T01:intron 35.0%
TCAGTTCTATCCACATACTT+GGG - Chr2:27458325-27458344 MsG0280008227.01.T01:intron 35.0%
TCCTTTCCAACACAATAAAG+GGG + Chr2:27458018-27458037 None:intergenic 35.0%
TTCAGTTCTATCCACATACT+TGG - Chr2:27458324-27458343 MsG0280008227.01.T01:intron 35.0%
TTCTTGAATTAAGCGTGTCT+TGG - Chr2:27458733-27458752 MsG0280008227.01.T01:CDS 35.0%
TTGTGAACTTAGATCCTGTT+TGG + Chr2:27459939-27459958 None:intergenic 35.0%
! ATCTAATCAAGTAGCTTGCA+AGG - Chr2:27459397-27459416 MsG0280008227.01.T01:intron 35.0%
! ATGTCGAAAGTGTACGTAAT+TGG - Chr2:27459761-27459780 MsG0280008227.01.T01:intron 35.0%
! GCAAATTTGATTTCTCCTCT+AGG - Chr2:27458261-27458280 MsG0280008227.01.T01:intron 35.0%
! TCTAATCAAGTAGCTTGCAA+GGG - Chr2:27459398-27459417 MsG0280008227.01.T01:intron 35.0%
! TCTACATTTTCTTCTGTCAG+TGG + Chr2:27459505-27459524 None:intergenic 35.0%
! TTAGCCTTCTAAATGGAATC+AGG - Chr2:27460475-27460494 MsG0280008227.01.T01:intron 35.0%
!! AATGAGAGTTGTTTTCTCAG+AGG - Chr2:27458931-27458950 MsG0280008227.01.T01:intron 35.0%
!! TTCTGCATTAGCCTTCTAAA+TGG - Chr2:27460468-27460487 MsG0280008227.01.T01:intron 35.0%
AACAAGAGTTCCCAAGTATG+TGG + Chr2:27458338-27458357 None:intergenic 40.0%
AGTTAAGCACTTACCGTATC+AGG + Chr2:27459905-27459924 None:intergenic 40.0%
ATTCACACTCAAATGTTGGG+TGG - Chr2:27458528-27458547 MsG0280008227.01.T01:intron 40.0%
CAACCATGACATTGAAGATG+GGG - Chr2:27459647-27459666 MsG0280008227.01.T01:intron 40.0%
CAGATACTAGATACTGAGAC+TGG - Chr2:27459718-27459737 MsG0280008227.01.T01:intron 40.0%
CCAACCTGATTCCATTTAGA+AGG + Chr2:27460482-27460501 None:intergenic 40.0%
CCATATCTTATTGGAACTGG+GGG - Chr2:27460139-27460158 MsG0280008227.01.T01:intron 40.0%
CCTTCTAAATGGAATCAGGT+TGG - Chr2:27460479-27460498 MsG0280008227.01.T01:intron 40.0%
CTCAACCATGACATTGAAGA+TGG - Chr2:27459645-27459664 MsG0280008227.01.T01:intron 40.0%
GAAACATGAAGGAAGAGAAG+TGG + Chr2:27458663-27458682 None:intergenic 40.0%
GAGGGGCTTCATTAAGAAAA+TGG - Chr2:27458197-27458216 MsG0280008227.01.T01:intron 40.0%
GGGGCTTCATTAAGAAAATG+GGG - Chr2:27458199-27458218 MsG0280008227.01.T01:intron 40.0%
GTGGACAATAATCTAGGAGA+TGG + Chr2:27458618-27458637 None:intergenic 40.0%
TCAGTGTCAGTTACTCTAGT+AGG - Chr2:27460410-27460429 MsG0280008227.01.T01:intron 40.0%
TGTTCAACCTCCAAGATTTC+TGG + Chr2:27459700-27459719 None:intergenic 40.0%
TTCAATGTCATGGTTGAGCT+AGG + Chr2:27459643-27459662 None:intergenic 40.0%
! AATTAAGCGTGTCTTGGTGT+CGG - Chr2:27458739-27458758 MsG0280008227.01.T01:CDS 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG + Chr2:27459006-27459025 None:intergenic 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG + Chr2:27458567-27458586 None:intergenic 40.0%
!!! GATATAAGTTTTGGGCCTAG+AGG + Chr2:27458279-27458298 None:intergenic 40.0%
AGGTATGTGCTGCATTGTGT+TGG - Chr2:27457812-27457831 MsG0280008227.01.T01:three_prime_UTR 45.0%
CACAAGCTCCTTGTAGTTTG+AGG + Chr2:27459612-27459631 None:intergenic 45.0%
CCAAACACGTCGTCAATCTA+AGG - Chr2:27459349-27459368 MsG0280008227.01.T01:intron 45.0%
CCCCCAGTTCCAATAAGATA+TGG + Chr2:27460142-27460161 None:intergenic 45.0%
CCTTAGATTGACGACGTGTT+TGG + Chr2:27459352-27459371 None:intergenic 45.0%
CTCAAACTACAAGGAGCTTG+TGG - Chr2:27459610-27459629 MsG0280008227.01.T01:intron 45.0%
GATCCCCATCTTCAATGTCA+TGG + Chr2:27459653-27459672 None:intergenic 45.0%
GCCCCTTTATTGTGTTGGAA+AGG - Chr2:27458014-27458033 MsG0280008227.01.T01:CDS 45.0%
GGTATGTGCTGCATTGTGTT+GGG - Chr2:27457813-27457832 MsG0280008227.01.T01:three_prime_UTR 45.0%
GTAACGTGTCAGTGTCATGT+TGG - Chr2:27459300-27459319 MsG0280008227.01.T01:intron 45.0%
GTGGCATTGCATGAGATAGA+TGG - Chr2:27459574-27459593 MsG0280008227.01.T01:intron 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG - Chr2:27460201-27460220 MsG0280008227.01.T01:intron 45.0%
TATCTTATTGGAACTGGGGG+AGG - Chr2:27460142-27460161 MsG0280008227.01.T01:intron 45.0%
TGCATTGTGTTGGGAGACTA+GGG - Chr2:27457822-27457841 MsG0280008227.01.T01:three_prime_UTR 45.0%
! CATTTTCTTCTGTCAGTGGC+AGG + Chr2:27459501-27459520 None:intergenic 45.0%
! GGTGTCGGATATGTATGGTT+CGG - Chr2:27458754-27458773 MsG0280008227.01.T01:CDS 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG - Chr2:27459537-27459556 MsG0280008227.01.T01:intron 45.0%
! TTGGTGCCCCTTTATTGTGT+TGG - Chr2:27458009-27458028 MsG0280008227.01.T01:exon 45.0%
! TTGGTGTCTGACATGTGTCA+GGG + Chr2:27459333-27459352 None:intergenic 45.0%
!! GTCTTGGTGTCGGATATGTA+TGG - Chr2:27458749-27458768 MsG0280008227.01.T01:CDS 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG - Chr2:27459529-27459548 MsG0280008227.01.T01:intron 45.0%
!! TTTGGTGTCTGACATGTGTC+AGG + Chr2:27459334-27459353 None:intergenic 45.0%
ACTGTCATAACTCCTGCTGC+CGG + Chr2:27460223-27460242 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG + Chr2:27460283-27460302 None:intergenic 50.0%
CGTATGAAACTCAGACACGG+AGG + Chr2:27458817-27458836 None:intergenic 50.0%
CGTGCTCCAAGAAACAAAGC+AGG - Chr2:27458997-27459016 MsG0280008227.01.T01:intron 50.0%
CTGCATTGTGTTGGGAGACT+AGG - Chr2:27457821-27457840 MsG0280008227.01.T01:three_prime_UTR 50.0%
! CTGGTTTGATGGCTGATGGA+GGG - Chr2:27459548-27459567 MsG0280008227.01.T01:intron 50.0%
CCTCCATCAGCCATCAAACC+AGG + Chr2:27459550-27459569 None:intergenic 55.0%
GATGGCTGATGGAGGGAATG+TGG - Chr2:27459555-27459574 MsG0280008227.01.T01:intron 55.0%
GTCAGTGGCAGGACACATCT+CGG + Chr2:27459490-27459509 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG - Chr2:27459544-27459563 MsG0280008227.01.T01:intron 55.0%
! CCTGGTTTGATGGCTGATGG+AGG - Chr2:27459547-27459566 MsG0280008227.01.T01:intron 55.0%
CGGCTAAGTGGACCGGCAGC+AGG - Chr2:27460208-27460227 MsG0280008227.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 27457750 27460573 27457750 ID=MsG0280008227.01;Name=MsG0280008227.01
Chr2 mRNA 27457750 27460573 27457750 ID=MsG0280008227.01.T01;Parent=MsG0280008227.01;Name=MsG0280008227.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0.5|0.66|0.66|1|1|3|261|184
Chr2 exon 27457750 27458202 27457750 ID=MsG0280008227.01.T01:exon:35132;Parent=MsG0280008227.01.T01
Chr2 exon 27458552 27458850 27458552 ID=MsG0280008227.01.T01:exon:35131;Parent=MsG0280008227.01.T01
Chr2 exon 27460510 27460573 27460510 ID=MsG0280008227.01.T01:exon:35130;Parent=MsG0280008227.01.T01
Chr2 CDS 27460510 27460573 27460510 ID=MsG0280008227.01.T01:cds;Parent=MsG0280008227.01.T01
Chr2 CDS 27458552 27458850 27458552 ID=MsG0280008227.01.T01:cds;Parent=MsG0280008227.01.T01
Chr2 CDS 27458011 27458202 27458011 ID=MsG0280008227.01.T01:cds;Parent=MsG0280008227.01.T01
Chr2 three_prime_UTR 27457750 27458010 27457750 ID=MsG0280008227.01.T01:three_prime_utr;Parent=MsG0280008227.01.T01
Gene Sequence

>MsG0280008227.01.T01

ATGGTGCTATTCTATAATCATGTGCATGAGTTGGGCTATATGATGAATTGTATTAGCAATCAAGGACTTGTTGTTTCTCCGAGATGTGTCCTGCCACTGACAGAAGAAAATGTAGAGAAAGTTTTGGATGAAGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGCATTGCATGAGATAGATGGTCTTGTTGTTATCCTCAAACTACAAGGAGCTTGTGGATCATGTCCTAGCTCAACCATGACATTGAAGATGGGGATCGAAACTCGTCTTCGCGATAAGATTCCAGAAATCTTGGAGGTTGAACAGATACTAGATACTGAGACTGGTCTTGAGCTAACCGAAGAAAATGTCGAAAGTGTTCTTTCAGAAATTAGACCATATCTTATTGGAACTGGGGGAGGAACATTAGAGCTTGTTGAGATTAATGATTACATCATTAAAGTTCGGCTAAGTGGACCGGCAGCAGGAGTTATGACAGTTCGTGTTGCGTTAACACAGAAGCTGAGAGACAAGATACCTTCTATTGCTGCTGTGCAGCTAATAGAATGA

Protein sequence

>MsG0280008227.01.T01

MVLFYNHVHELGYMMNCISNQGLVVSPRCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEENVESVLSEIRPYLIGTGGGTLELVEINDYIIKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE*