AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005755.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005755.01.T01 MTR_1g106075 88.333 60 4 1 1 57 1 60 2.84e-30 102
MsG0180005755.01.T01 MTR_3g008630 86.667 60 5 1 1 57 1 60 9.71e-29 99.0
MsG0180005755.01.T02 MTR_1g106075 97.015 134 1 2 1 134 1 131 1.09e-90 259
MsG0180005755.01.T02 MTR_3g008630 92.537 134 7 2 1 134 1 131 8.66e-86 246
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005755.01.T02 AT1G49975 61.314 137 42 3 1 134 1 129 3.83e-51 159

Find 85 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACATGTTCATTATCCTTT+AGG 0.222495 1:+95723324 None:intergenic
AGAAGCACGAACATGGAATT+TGG 0.263666 1:+95723494 MsG0180005755.01.T01:CDS
TCTATTGGGAAATTTGGATA+TGG 0.287896 1:+95724180 MsG0180005755.01.T01:three_prime_UTR
TCTATTGGGAAATTTGGATA+TGG 0.287896 1:+95728098 MsG0180005755.01.T01:intron
AGCACCACCAACATGGAATT+TGG 0.289275 1:+95727455 MsG0180005755.01.T01:intron
TGGCTAAACCTAATCTCATT+TGG 0.341670 1:-95728218 None:intergenic
GAAGAGGCGATGAGTTCTAT+AGG 0.348824 1:+95727332 MsG0180005755.01.T01:intron
GATTACTTTGAGTTCGTAGA+AGG 0.353863 1:+95724009 MsG0180005755.01.T01:three_prime_UTR
GATTACTTTGAGTTCGTAGA+AGG 0.353863 1:+95727965 MsG0180005755.01.T01:intron
TATAGGGCAAACCATGTTAA+TGG 0.362210 1:+95727349 MsG0180005755.01.T01:intron
TATACGGCAAACCATGTTAA+TGG 0.368666 1:+95723400 MsG0180005755.01.T01:CDS
CTTCTGAATGTATGTGTGTC+TGG 0.384187 1:+95723660 MsG0180005755.01.T01:three_prime_UTR
CAGAAAAGGGTATCCTTGAT+TGG 0.408398 1:+95724070 MsG0180005755.01.T01:three_prime_UTR
CAGAAAAGGGTATCCTTGAT+TGG 0.408398 1:+95728026 MsG0180005755.01.T01:intron
TGCCTAGTAAGATATCTATA+TGG 0.409847 1:+95728191 MsG0180005755.01.T01:intron
ATGTTCGTGCTTCTCAAAGT+TGG 0.416669 1:-95723485 None:intergenic
GTTTGCAAGGAAAGGAGGAG+GGG 0.424219 1:+95727990 MsG0180005755.01.T01:intron
ATGGTCATCCAAATGAGATT+AGG 0.424537 1:+95728210 MsG0180005755.01.T01:three_prime_UTR
TGTTCGTGCTTCTCAAAGTT+GGG 0.431311 1:-95723484 None:intergenic
GAAGCTTTCAGAAGCAGAAA+AGG 0.433331 1:+95724056 MsG0180005755.01.T01:three_prime_UTR
GAAGCTTTCAGAAGCAGAAA+AGG 0.433331 1:+95728012 MsG0180005755.01.T01:intron
GGGTTTGCAAGGAAAGGAGG+AGG 0.434142 1:+95727988 MsG0180005755.01.T01:intron
CCTTCCAAATTCCATGTTGG+TGG 0.438290 1:-95727459 None:intergenic
TTGGTGGTGCTTCTCAAAGT+TGG 0.441638 1:-95727443 None:intergenic
GTTTGCAAGGAAAGGAAGAG+GGG 0.447267 1:+95724034 MsG0180005755.01.T01:three_prime_UTR
AAGGTCATTGCTTCTTCAAA+GGG 0.448082 1:+95723584 MsG0180005755.01.T01:three_prime_UTR
TGGTGGTGCTTCTCAAAGTT+GGG 0.449042 1:-95727442 None:intergenic
TAACTCTTAAGTTGCGGTTG+CGG 0.454008 1:-95723549 None:intergenic
GGGTTTGCAAGGAAAGGAAG+AGG 0.455002 1:+95724032 MsG0180005755.01.T01:three_prime_UTR
TTGCGTTGCGGTTGTGGTTG+CGG 0.460496 1:-95727510 None:intergenic
AGGGTCTTGCGTTGCGGTTG+TGG 0.463530 1:-95727516 None:intergenic
TGTTAGCTTTAAGCCAATCA+AGG 0.469309 1:-95724083 None:intergenic
TGTTAGCTTTAAGCCAATCA+AGG 0.469309 1:-95728039 None:intergenic
AAAATCAAAATTTACAAGCT+AGG 0.472392 1:-95724158 None:intergenic
AAGGGACGATGAGTTCTATA+CGG 0.476137 1:+95723384 MsG0180005755.01.T01:exon
AAGAGGCGATGAGTTCTATA+GGG 0.479187 1:+95727333 MsG0180005755.01.T01:intron
AGAAGCAATGTCCTTGACTC+AGG 0.482163 1:-95727536 None:intergenic
CAAGGTCATTGCTTCTTCAA+AGG 0.483233 1:+95723583 MsG0180005755.01.T01:three_prime_UTR
GAATATAATCAATTGTAACT+TGG 0.487280 1:-95723686 None:intergenic
AGAAGTGATGATGCTACATA+AGG 0.489123 1:-95723642 None:intergenic
GGTTTGCAAGGAAAGGAAGA+GGG 0.496880 1:+95724033 MsG0180005755.01.T01:three_prime_UTR
GGTTTGCAAGGAAAGGAGGA+GGG 0.503240 1:+95727989 MsG0180005755.01.T01:intron
TAGATTACCGAATAGAAAAG+AGG 0.503600 1:+95724241 MsG0180005755.01.T01:three_prime_UTR
TTATTACAAGCGTAATTACA+AGG 0.507139 1:+95723987 MsG0180005755.01.T01:three_prime_UTR
TTATTACAAGCGTAATTACA+AGG 0.507139 1:+95727943 MsG0180005755.01.T01:intron
AGAAGCAATGACCTTGACTC+AGG 0.511020 1:-95723576 None:intergenic
TAACAAATAACTTATCCTAA+AGG 0.513508 1:-95723339 None:intergenic
TCTCCTTCCAAATTCCATGT+TGG 0.526459 1:-95727462 None:intergenic
AACTTTGAGAAGCACGAACA+TGG 0.532220 1:+95723487 MsG0180005755.01.T01:CDS
GGGTCTTAACTCTTAAGTTG+CGG 0.548912 1:-95723555 None:intergenic
GTTAATGGCACTAACAGTTA+CGG 0.549686 1:+95727364 MsG0180005755.01.T01:intron
AACTGTTAGTGCCATTAACA+TGG 0.549756 1:-95727360 None:intergenic
GTATGCATCATCCAATGTGC+AGG 0.549946 1:+95727394 MsG0180005755.01.T01:intron
AACAAATCAAACTAAAGAGA+AGG 0.550735 1:+95723365 MsG0180005755.01.T01:five_prime_UTR
TGACTCAGGGTCTTGCGTTG+CGG 0.557938 1:-95727522 None:intergenic
AACTGTTAGTGCCATTAACA+TGG 0.559692 1:-95723411 None:intergenic
AGATTACCGAATAGAAAAGA+GGG 0.564740 1:+95724242 MsG0180005755.01.T01:three_prime_UTR
TACTTTGAGTTCGTAGAAGG+GGG 0.574786 1:+95724012 MsG0180005755.01.T01:three_prime_UTR
TACTTTGAGTTCGTAGAAGG+GGG 0.574786 1:+95727968 MsG0180005755.01.T01:intron
AGTGCCGTGTCTGTCTCGCT+AGG 0.575602 1:+95723741 MsG0180005755.01.T01:three_prime_UTR
AACATGGAATTTGGAAGGAG+AGG 0.586422 1:+95727464 MsG0180005755.01.T01:intron
ACAAATCAAACTAAAGAGAA+GGG 0.588427 1:+95723366 MsG0180005755.01.T01:five_prime_UTR
ATTATGAACTGCCTGCACAT+TGG 0.588435 1:-95727405 None:intergenic
ATTATGAACTGCTTGCACAT+TGG 0.592913 1:-95723447 None:intergenic
ATTACTTTGAGTTCGTAGAA+GGG 0.593520 1:+95724010 MsG0180005755.01.T01:three_prime_UTR
ATTACTTTGAGTTCGTAGAA+GGG 0.593520 1:+95727966 MsG0180005755.01.T01:intron
GCACGAACATGGAATTTGGA+AGG 0.597029 1:+95723498 MsG0180005755.01.T01:CDS
AAGCTTTCAGAAGCAGAAAA+GGG 0.600223 1:+95724057 MsG0180005755.01.T01:three_prime_UTR
AAGCTTTCAGAAGCAGAAAA+GGG 0.600223 1:+95728013 MsG0180005755.01.T01:intron
GAAGAAAACAGAGGAAAACA+AGG 0.601206 1:+95727813 MsG0180005755.01.T01:intron
TTACTTTGAGTTCGTAGAAG+GGG 0.603502 1:+95724011 MsG0180005755.01.T01:three_prime_UTR
TTACTTTGAGTTCGTAGAAG+GGG 0.603502 1:+95727967 MsG0180005755.01.T01:intron
AAATTTGTTAGATTACCGAA+TGG 0.606309 1:+95728151 MsG0180005755.01.T01:intron
GAAGCAATGACCTTGACTCA+GGG 0.616188 1:-95723575 None:intergenic
GAAGCAATGTCCTTGACTCA+GGG 0.617035 1:-95727535 None:intergenic
CCACCAACATGGAATTTGGA+AGG 0.619705 1:+95727459 MsG0180005755.01.T01:intron
CAACGCAAGACCCTGAGTCA+AGG 0.623179 1:+95727525 MsG0180005755.01.T01:intron
GAAGAAAACAGATGAAAACA+AGG 0.626367 1:+95723844 MsG0180005755.01.T01:three_prime_UTR
TTTGAGAAGCACCACCAACA+TGG 0.627251 1:+95727448 MsG0180005755.01.T01:intron
AGAGTTAAGACCCTGAGTCA+AGG 0.629556 1:+95723565 MsG0180005755.01.T01:exon
TGTGGTTGCGGCGATAACAG+TGG 0.629666 1:-95727498 None:intergenic
ATCAAAATTTACAAGCTAGG+TGG 0.636892 1:-95724155 None:intergenic
TGCGGTTGCGGCGATAACAG+CGG 0.638227 1:-95723537 None:intergenic
AAGACCTAGCGAGACAGACA+CGG 0.649573 1:-95723745 None:intergenic
AGAATATTTGAAGAAAACAG+AGG 0.670181 1:+95727804 MsG0180005755.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAACATTTG+AGG + Chr1:95727032-95727051 MsG0180005755.01.T01:intron 10.0%
!!! AATTTTATTACTATTTACAT+GGG - Chr1:95726470-95726489 None:intergenic 10.0%
!! AAAGTTAAAAAAATAACTTC+CGG + Chr1:95726362-95726381 MsG0180005755.01.T01:intron 15.0%
!!! AAAAGACAAATATTGTTTTA+AGG - Chr1:95726660-95726679 None:intergenic 15.0%
!!! AAAGACAAATATTGTTTTAA+GGG - Chr1:95726659-95726678 None:intergenic 15.0%
!!! AATAAGCTTTTTTTTAAAAG+AGG + Chr1:95725999-95726018 MsG0180005755.01.T01:intron 15.0%
!!! AGTTTTTATTTTCTAATAGA+TGG + Chr1:95726975-95726994 MsG0180005755.01.T01:intron 15.0%
!!! ATAAGTTTTTTTTGAAAAAG+AGG - Chr1:95725121-95725140 None:intergenic 15.0%
!!! CAATTTTATTACTATTTACA+TGG - Chr1:95726471-95726490 None:intergenic 15.0%
!!! GTAAATTTTGATTTTCTATT+GGG + Chr1:95724166-95724185 MsG0180005755.01.T01:three_prime_UTR 15.0%
!!! TATTTTTGAAAAATTGTGTT+TGG - Chr1:95726553-95726572 None:intergenic 15.0%
!!! TGTAAATTTTGATTTTCTAT+TGG + Chr1:95724165-95724184 MsG0180005755.01.T01:three_prime_UTR 15.0%
!! AAAAAAAAAAACATTTGAGG+TGG + Chr1:95727035-95727054 MsG0180005755.01.T01:intron 20.0%
!! AAAATCAAAATTTACAAGCT+AGG - Chr1:95724161-95724180 None:intergenic 20.0%
!! AAGTTAAAAAAATAACTTCC+GGG + Chr1:95726363-95726382 MsG0180005755.01.T01:intron 20.0%
!! CAAATAATTGTCATATTCAT+GGG - Chr1:95726530-95726549 None:intergenic 20.0%
!! CATATGTATGTATGAATATA+AGG - Chr1:95727242-95727261 None:intergenic 20.0%
!! CTAAAAAAAGATGATGTATA+TGG + Chr1:95724444-95724463 MsG0180005755.01.T01:intron 20.0%
!! GAATATAATCAATTGTAACT+TGG - Chr1:95723689-95723708 None:intergenic 20.0%
!! TAACAAATAACTTATCCTAA+AGG - Chr1:95723342-95723361 None:intergenic 20.0%
!! TGATTTAAAAAATTATTCCC+AGG + Chr1:95726300-95726319 MsG0180005755.01.T01:intron 20.0%
!!! AAGACAAATATTGTTTTAAG+GGG - Chr1:95726658-95726677 None:intergenic 20.0%
!!! AAGTTGTTTTGATAAATAAG+TGG - Chr1:95724924-95724943 None:intergenic 20.0%
!!! AATAAGCTTTAAAAACACTT+AGG + Chr1:95726263-95726282 MsG0180005755.01.T01:intron 20.0%
!!! ATAAATAAGCTGTTTCAATA+AGG - Chr1:95725546-95725565 None:intergenic 20.0%
!!! ATAAGCTATTTTTGAAAAAG+AGG - Chr1:95725061-95725080 None:intergenic 20.0%
!!! ATAAGCTGTTTTTTAAAAAG+AGG + Chr1:95726101-95726120 MsG0180005755.01.T01:intron 20.0%
!!! ATAAGTTGTTTTTTGAAAAG+AGG + Chr1:95726059-95726078 MsG0180005755.01.T01:intron 20.0%
!!! ATCTTTTTTTAGTTTCTCAT+AGG - Chr1:95724436-95724455 None:intergenic 20.0%
!!! ATTGATTTTAAGAGGAAAAA+CGG - Chr1:95724761-95724780 None:intergenic 20.0%
!!! CATAATATTTGACTTTTAGA+TGG - Chr1:95724502-95724521 None:intergenic 20.0%
!!! TAAGTTGTTTTTGAAAAAAG+AGG + Chr1:95726204-95726223 MsG0180005755.01.T01:intron 20.0%
!!! TACAATGTATTGATTTTAAG+AGG - Chr1:95724769-95724788 None:intergenic 20.0%
!!! TGGGAATAATTTTTTAAATC+AGG - Chr1:95726301-95726320 None:intergenic 20.0%
! AACAAATCAAACTAAAGAGA+AGG + Chr1:95723365-95723384 MsG0180005755.01.T01:five_prime_UTR 25.0%
! AAGATATCTAGATCACTATA+TGG + Chr1:95724281-95724300 MsG0180005755.01.T01:intron 25.0%
! ACAAATCAAACTAAAGAGAA+GGG + Chr1:95723366-95723385 MsG0180005755.01.T01:five_prime_UTR 25.0%
! AGAATATTTGAAGAAAACAG+AGG + Chr1:95723835-95723854 MsG0180005755.01.T01:three_prime_UTR 25.0%
! CAAATTGTAAAAGAAGAATG+TGG + Chr1:95727147-95727166 MsG0180005755.01.T01:intron 25.0%
! GCAAATAATTGTCATATTCA+TGG - Chr1:95726531-95726550 None:intergenic 25.0%
! GCTTAATAAACTTATCCTAA+AGG - Chr1:95727300-95727319 None:intergenic 25.0%
! TTACACAAAACAACTTACTA+CGG - Chr1:95725750-95725769 None:intergenic 25.0%
! TTATTACAAGCGTAATTACA+AGG + Chr1:95723987-95724006 MsG0180005755.01.T01:three_prime_UTR 25.0%
! TTGAGGTGGAAATTAAATTA+GGG + Chr1:95727049-95727068 MsG0180005755.01.T01:intron 25.0%
! TTTCTTTAACTCCCAAATAA+GGG - Chr1:95724688-95724707 None:intergenic 25.0%
! TTTGACTAAAACTCGATAAA+AGG - Chr1:95726884-95726903 None:intergenic 25.0%
!! AAATGGTAGATCTCATTTTA+TGG - Chr1:95724562-95724581 None:intergenic 25.0%
!! AATTATCTCTGTTTTCCATT+CGG - Chr1:95728169-95728188 None:intergenic 25.0%
!! TGATTTTCTATTGGGAAATT+TGG + Chr1:95724174-95724193 MsG0180005755.01.T01:three_prime_UTR 25.0%
!! TTCTTTGGGAATAAAATCAT+GGG - Chr1:95726426-95726445 None:intergenic 25.0%
!! TTTCTTTGGGAATAAAATCA+TGG - Chr1:95726427-95726446 None:intergenic 25.0%
!! TTTGAGGTGGAAATTAAATT+AGG + Chr1:95727048-95727067 MsG0180005755.01.T01:intron 25.0%
!!! AAATTTGTTAGATTACCGAA+TGG + Chr1:95728151-95728170 MsG0180005755.01.T01:intron 25.0%
!!! ACAACCTCTTTTTCAAAAAA+CGG + Chr1:95725174-95725193 MsG0180005755.01.T01:intron 25.0%
!!! ACAATTTTTCAAAAATACCC+AGG + Chr1:95726556-95726575 MsG0180005755.01.T01:intron 25.0%
!!! AGACAAATATTGTTTTAAGG+GGG - Chr1:95726657-95726676 None:intergenic 25.0%
!!! ATAAGCTGTTTTTAGAAAAG+AGG + Chr1:95725724-95725743 MsG0180005755.01.T01:intron 25.0%
!!! ATAAGCTGTTTTTGAAAAAG+AGG + Chr1:95725784-95725803 MsG0180005755.01.T01:intron 25.0%
!!! ATAAGCTGTTTTTGAAAAAG+AGG - Chr1:95725803-95725784 None:intergenic 25.0%
!!! ATAAGCTGTTTTTTGAAAAG+AGG + Chr1:95725890-95725909 MsG0180005755.01.T01:intron 25.0%
!!! TAAGCTGTTTTTTGAAAAAG+AGG + Chr1:95725603-95725622 MsG0180005755.01.T01:intron 25.0%
!!! TTGATTTTAAGAGGAAAAAC+GGG - Chr1:95724760-95724779 None:intergenic 25.0%
AAAAATACCCAGGAATAAGA+TGG + Chr1:95726566-95726585 MsG0180005755.01.T01:intron 30.0%
AAAATGACAAAGAGGTAAGT+AGG + Chr1:95723870-95723889 MsG0180005755.01.T01:intron 30.0%
AAATGACAAAGAGGTAAGTA+GGG + Chr1:95727840-95727859 MsG0180005755.01.T01:intron 30.0%
ACAAAGTCTAAGTGACAAAA+TGG - Chr1:95724579-95724598 None:intergenic 30.0%
AGATTACCGAATAGAAAAGA+GGG + Chr1:95724242-95724261 MsG0180005755.01.T01:three_prime_UTR 30.0%
ATCAAAATTTACAAGCTAGG+TGG - Chr1:95724158-95724177 None:intergenic 30.0%
CTATTACTTTCATGCATTCT+TGG + Chr1:95724472-95724491 MsG0180005755.01.T01:intron 30.0%
GAAGAAAACAGATGAAAACA+AGG + Chr1:95723844-95723863 MsG0180005755.01.T01:three_prime_UTR 30.0%
GACCATATAGATATCTTACT+AGG - Chr1:95728196-95728215 None:intergenic 30.0%
GAGATCTTAATAAGCTGTTA+TGG - Chr1:95725330-95725349 None:intergenic 30.0%
GTTTCTTTAACTCCCAAATA+AGG - Chr1:95724689-95724708 None:intergenic 30.0%
TAGATTACCGAATAGAAAAG+AGG + Chr1:95724241-95724260 MsG0180005755.01.T01:three_prime_UTR 30.0%
TATGTTAACATTGATGTCAC+TGG + Chr1:95724518-95724537 MsG0180005755.01.T01:intron 30.0%
TCTATTGGGAAATTTGGATA+TGG + Chr1:95724180-95724199 MsG0180005755.01.T01:three_prime_UTR 30.0%
TGCCTAGTAAGATATCTATA+TGG + Chr1:95728191-95728210 MsG0180005755.01.T01:intron 30.0%
TTAAAGAAACCAACAAGGAA+AGG + Chr1:95724699-95724718 MsG0180005755.01.T01:intron 30.0%
TTCTTTAACTCCCAAATAAG+GGG - Chr1:95724687-95724706 None:intergenic 30.0%
TTTGAAAGATTTCGTGTCTT+TGG + Chr1:95726914-95726933 MsG0180005755.01.T01:intron 30.0%
! AACTATCCCTCTTTTCTATT+CGG - Chr1:95724251-95724270 None:intergenic 30.0%
! ACGGTTTAAAATTTCATTCC+TGG - Chr1:95726624-95726643 None:intergenic 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + Chr1:95724010-95724029 MsG0180005755.01.T01:three_prime_UTR 30.0%
! CGGTTTAAAATTTCATTCCT+GGG - Chr1:95726623-95726642 None:intergenic 30.0%
! CTTCACAAGTCTAACATTTT+TGG - Chr1:95728241-95728260 None:intergenic 30.0%
! GATTTTATTCCCAAAGAAAG+TGG + Chr1:95726428-95726447 MsG0180005755.01.T01:intron 30.0%
! TTAATCACAGTTTTTGTGTG+TGG + Chr1:95723950-95723969 MsG0180005755.01.T01:intron 30.0%
!! AAGCTTTAAAAACACTTAGG+AGG + Chr1:95726266-95726285 MsG0180005755.01.T01:intron 30.0%
!!! ATAAGCCGTTTTTGAAAAAG+AGG + Chr1:95725663-95725682 MsG0180005755.01.T01:intron 30.0%
!!! GTGGAAGTTATTTTTTTCCT+AGG - Chr1:95726400-95726419 None:intergenic 30.0%
!!! TAAGCCGTTTTTTGAAAAAG+AGG - Chr1:95725181-95725200 None:intergenic 30.0%
!!! TACGACCTCTTTTTCAAAAA+CGG - Chr1:95725072-95725053 None:intergenic 30.0%
AAGCTTTCAGAAGCAGAAAA+GGG + Chr1:95724057-95724076 MsG0180005755.01.T01:three_prime_UTR 35.0%
AAGGTCATTGCTTCTTCAAA+GGG + Chr1:95723584-95723603 MsG0180005755.01.T01:three_prime_UTR 35.0%
AATAATGGCCATCTTATTCC+TGG - Chr1:95726577-95726596 None:intergenic 35.0%
AATGACAAAGAGGTAAGTAG+GGG + Chr1:95727841-95727860 MsG0180005755.01.T01:intron 35.0%
AATTATTCCCAGGAATGTAG+AGG + Chr1:95726310-95726329 MsG0180005755.01.T01:intron 35.0%
AGCTAAGCTCAACGATAAAA+AGG - Chr1:95726853-95726872 None:intergenic 35.0%
AGTGATCTAGATATCTTACC+AGG - Chr1:95724278-95724297 None:intergenic 35.0%
ATAATGGCCATCTTATTCCT+GGG - Chr1:95726576-95726595 None:intergenic 35.0%
ATGGGAATTGTTTGTGATAG+TGG - Chr1:95726512-95726531 None:intergenic 35.0%
ATGGTCATCCAAATGAGATT+AGG + Chr1:95728210-95728229 MsG0180005755.01.T01:three_prime_UTR 35.0%
ATTATGAACTGCTTGCACAT+TGG - Chr1:95723450-95723469 None:intergenic 35.0%
CAAGGAGAAAAATGACAAAG+AGG + Chr1:95723862-95723881 MsG0180005755.01.T01:three_prime_UTR 35.0%
CATATGAAGCACAATGTAGT+AGG + Chr1:95727256-95727275 MsG0180005755.01.T01:intron 35.0%
CATTGTCTCGAATATGACTA+TGG + Chr1:95724401-95724420 MsG0180005755.01.T01:intron 35.0%
CCACATGTTCATTATCCTTT+AGG + Chr1:95727282-95727301 MsG0180005755.01.T01:intron 35.0%
CCACTAAAAACATGTTCAAG+TGG - Chr1:95723772-95723791 None:intergenic 35.0%
CCTAAAGGATAATGAACATG+TGG - Chr1:95727285-95727304 None:intergenic 35.0%
GAAGAAAACAGAGGAAAACA+AGG + Chr1:95727813-95727832 MsG0180005755.01.T01:intron 35.0%
GGAATAAAATCATGGGTAAG+TGG - Chr1:95726419-95726438 None:intergenic 35.0%
GTTAATGGCACTAACAGTTA+CGG + Chr1:95723415-95723434 MsG0180005755.01.T01:CDS 35.0%
TAATCAAATGTGACTGTGTC+AGG - Chr1:95727664-95727683 None:intergenic 35.0%
TACTCTTGTAGTGACATTTG+AGG + Chr1:95727000-95727019 MsG0180005755.01.T01:intron 35.0%
TATACGGCAAACCATGTTAA+TGG + Chr1:95723400-95723419 MsG0180005755.01.T01:CDS 35.0%
TATAGGGCAAACCATGTTAA+TGG + Chr1:95727349-95727368 MsG0180005755.01.T01:intron 35.0%
TCCTAGGAATTCTTTATTCC+CGG - Chr1:95726384-95726403 None:intergenic 35.0%
TCGCTAAAACTAATCTCCTT+TGG - Chr1:95724311-95724330 None:intergenic 35.0%
TGGCTAAACCTAATCTCATT+TGG - Chr1:95728221-95728240 None:intergenic 35.0%
TGGGAATTGTTTGTGATAGT+GGG - Chr1:95726511-95726530 None:intergenic 35.0%
TTATTATTTCCCAGGAGGAA+AGG + Chr1:95726592-95726611 MsG0180005755.01.T01:intron 35.0%
TTCCTCCTGGGAAATAATAA+TGG - Chr1:95726592-95726611 None:intergenic 35.0%
TTCGTGTCTTTGGTAAACTA+AGG + Chr1:95726924-95726943 MsG0180005755.01.T01:intron 35.0%
! AACTGTTAGTGCCATTAACA+TGG - Chr1:95723414-95723433 None:intergenic 35.0%
! ACAAGCTGTTATCTGAAATG+AGG + Chr1:95725844-95725863 MsG0180005755.01.T01:intron 35.0%
! AGAAGTGATGATGCTACATA+AGG - Chr1:95723645-95723664 None:intergenic 35.0%
! GAGATCGTAATAAGCTGTTT+TGG - Chr1:95725223-95725242 None:intergenic 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + Chr1:95724009-95724028 MsG0180005755.01.T01:three_prime_UTR 35.0%
! GGAAAACATTCCCCTTATTT+GGG + Chr1:95724674-95724693 MsG0180005755.01.T01:intron 35.0%
! TATTCCTAGCCACTTTCTTT+GGG - Chr1:95726440-95726459 None:intergenic 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + Chr1:95724011-95724030 MsG0180005755.01.T01:three_prime_UTR 35.0%
! TTATTCCTAGCCACTTTCTT+TGG - Chr1:95726441-95726460 None:intergenic 35.0%
!! ACTTTGTTTGCGAGTTTTGA+GGG + Chr1:95724592-95724611 MsG0180005755.01.T01:intron 35.0%
!! GTTTGTGATAGTGGGTATAT+GGG - Chr1:95726503-95726522 None:intergenic 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - Chr1:95724086-95724105 None:intergenic 35.0%
!! TGTTTGTGATAGTGGGTATA+TGG - Chr1:95726504-95726523 None:intergenic 35.0%
!!! CCACTTGAACATGTTTTTAG+TGG + Chr1:95723769-95723788 MsG0180005755.01.T01:three_prime_UTR 35.0%
!!! CGACATGAACATGTTTTTAG+TGG + Chr1:95727737-95727756 MsG0180005755.01.T01:intron 35.0%
AACATGGAATTTGGAAGGAG+AGG + Chr1:95723503-95723522 MsG0180005755.01.T01:CDS 40.0%
AAGAGGCGATGAGTTCTATA+GGG + Chr1:95727333-95727352 MsG0180005755.01.T01:intron 40.0%
AAGGGACGATGAGTTCTATA+CGG + Chr1:95723384-95723403 MsG0180005755.01.T01:exon 40.0%
AATTCCAACCTCTACATTCC+TGG - Chr1:95726321-95726340 None:intergenic 40.0%
ATCACTATATGGTCGACCAA+AGG + Chr1:95724292-95724311 MsG0180005755.01.T01:intron 40.0%
ATGTTCGTGCTTCTCAAAGT+TGG - Chr1:95723488-95723507 None:intergenic 40.0%
ATTATGAACTGCCTGCACAT+TGG - Chr1:95727408-95727427 None:intergenic 40.0%
ATTCCAACCTCTACATTCCT+GGG - Chr1:95726320-95726339 None:intergenic 40.0%
CAACAAGGAAAGGAGATAGA+GGG + Chr1:95724709-95724728 MsG0180005755.01.T01:intron 40.0%
CAAGGTCATTGCTTCTTCAA+AGG + Chr1:95723583-95723602 MsG0180005755.01.T01:three_prime_UTR 40.0%
CTGAATATATGCGTGACTTC+TGG + Chr1:95727625-95727644 MsG0180005755.01.T01:intron 40.0%
CTTCTGAATGTATGTGTGTC+TGG + Chr1:95723660-95723679 MsG0180005755.01.T01:three_prime_UTR 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + Chr1:95724056-95724075 MsG0180005755.01.T01:three_prime_UTR 40.0%
GATGGCCATTATTATTTCCC+AGG + Chr1:95726584-95726603 MsG0180005755.01.T01:intron 40.0%
GGGAAAACATTCCCCTTATT+TGG + Chr1:95724673-95724692 MsG0180005755.01.T01:intron 40.0%
GGGAATGAAAGGAAAGGATA+AGG + Chr1:95724613-95724632 MsG0180005755.01.T01:intron 40.0%
GGGAGTTAAAGAAACCAACA+AGG + Chr1:95724694-95724713 MsG0180005755.01.T01:intron 40.0%
TATTCCCAAAGAAAGTGGCT+AGG + Chr1:95726433-95726452 MsG0180005755.01.T01:intron 40.0%
TCCGGGAATAAAGAATTCCT+AGG + Chr1:95726380-95726399 MsG0180005755.01.T01:intron 40.0%
TCTCCTTCCAAATTCCATGT+TGG - Chr1:95723504-95723523 None:intergenic 40.0%
TGAAAGGAAAGGATAAGGAG+AGG + Chr1:95724618-95724637 MsG0180005755.01.T01:intron 40.0%
TGTTCGTGCTTCTCAAAGTT+GGG - Chr1:95723487-95723506 None:intergenic 40.0%
TTTGAGGGGAATGAAAGGAA+AGG + Chr1:95724607-95724626 MsG0180005755.01.T01:intron 40.0%
! AAAGAGGGATAGTTTTTGCC+TGG + Chr1:95724257-95724276 MsG0180005755.01.T01:three_prime_UTR 40.0%
! AACTTTGAGAAGCACGAACA+TGG + Chr1:95723487-95723506 MsG0180005755.01.T01:CDS 40.0%
! AGAAGCACGAACATGGAATT+TGG + Chr1:95723494-95723513 MsG0180005755.01.T01:CDS 40.0%
! AGAAGTGATGACGCTACATA+GGG - Chr1:95727607-95727626 None:intergenic 40.0%
! GAGGTCGTAATAAGCTGTTT+TGG + Chr1:95725622-95725641 MsG0180005755.01.T01:intron 40.0%
! GAGGTCGTAATAAGCTGTTT+TGG - Chr1:95725641-95725622 None:intergenic 40.0%
! GAGGTTGTGATAAGCTGTTT+TGG - Chr1:95725162-95725181 None:intergenic 40.0%
! GGGTCTTAACTCTTAAGTTG+CGG - Chr1:95723558-95723577 None:intergenic 40.0%
! TAACTCTTAAGTTGCGGTTG+CGG - Chr1:95723552-95723571 None:intergenic 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + Chr1:95724012-95724031 MsG0180005755.01.T01:three_prime_UTR 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + Chr1:95724070-95724089 MsG0180005755.01.T01:three_prime_UTR 40.0%
!! GACTTTGTTTGCGAGTTTTG+AGG + Chr1:95724591-95724610 MsG0180005755.01.T01:intron 40.0%
!! TTAAGGGGGTGTTTGTTTGA+CGG - Chr1:95726643-95726662 None:intergenic 40.0%
!!! CTTTGTTTGCGAGTTTTGAG+GGG + Chr1:95724593-95724612 MsG0180005755.01.T01:intron 40.0%
AGAAGCAATGACCTTGACTC+AGG - Chr1:95723579-95723598 None:intergenic 45.0%
AGAAGCAATGTCCTTGACTC+AGG - Chr1:95727539-95727558 None:intergenic 45.0%
AGAGTTAAGACCCTGAGTCA+AGG + Chr1:95723565-95723584 MsG0180005755.01.T01:exon 45.0%
AGCACCACCAACATGGAATT+TGG + Chr1:95727455-95727474 MsG0180005755.01.T01:intron 45.0%
AGGAAAGGATAAGGAGAGGA+AGG + Chr1:95724622-95724641 MsG0180005755.01.T01:intron 45.0%
ATTCCCAGGAATGTAGAGGT+TGG + Chr1:95726314-95726333 MsG0180005755.01.T01:intron 45.0%
CCAACAAGGAAAGGAGATAG+AGG + Chr1:95724708-95724727 MsG0180005755.01.T01:intron 45.0%
CCACCAACATGGAATTTGGA+AGG + Chr1:95727459-95727478 MsG0180005755.01.T01:intron 45.0%
CCTCTATCTCCTTTCCTTGT+TGG - Chr1:95724711-95724730 None:intergenic 45.0%
CCTTCCAAATTCCATGTTGG+TGG - Chr1:95727462-95727481 None:intergenic 45.0%
GAAGAGGCGATGAGTTCTAT+AGG + Chr1:95727332-95727351 MsG0180005755.01.T01:intron 45.0%
GAAGCAATGACCTTGACTCA+GGG - Chr1:95723578-95723597 None:intergenic 45.0%
GAAGCAATGTCCTTGACTCA+GGG - Chr1:95727538-95727557 None:intergenic 45.0%
GCACGAACATGGAATTTGGA+AGG + Chr1:95723498-95723517 MsG0180005755.01.T01:CDS 45.0%
GGAAAGGATAAGGAGAGGAA+GGG + Chr1:95724623-95724642 MsG0180005755.01.T01:intron 45.0%
GGCCATTATTATTTCCCAGG+AGG + Chr1:95726587-95726606 MsG0180005755.01.T01:intron 45.0%
GGTTTGCAAGGAAAGGAAGA+GGG + Chr1:95724033-95724052 MsG0180005755.01.T01:three_prime_UTR 45.0%
GTAAGTGACGCTCTCAAAGT+GGG + Chr1:95723884-95723903 MsG0180005755.01.T01:intron 45.0%
GTATGCATCATCCAATGTGC+AGG + Chr1:95723436-95723455 MsG0180005755.01.T01:CDS 45.0%
GTTTGCAAGGAAAGGAAGAG+GGG + Chr1:95724034-95724053 MsG0180005755.01.T01:three_prime_UTR 45.0%
TAAGTGACGCTCTCAAAGTG+GGG + Chr1:95723885-95723904 MsG0180005755.01.T01:intron 45.0%
TGACTGTGTCAGGTCAATGT+CGG - Chr1:95727654-95727673 None:intergenic 45.0%
TGGGAATAACCTTTCCTCCT+GGG - Chr1:95726604-95726623 None:intergenic 45.0%
! ACAGTTTTTGTGTGTGGCAG+AGG + Chr1:95723956-95723975 MsG0180005755.01.T01:intron 45.0%
! CAGAAGTGATGACGCTACAT+AGG - Chr1:95727608-95727627 None:intergenic 45.0%
! CAGTTTTTGTGTGTGGCAGA+GGG + Chr1:95723957-95723976 MsG0180005755.01.T01:intron 45.0%
! TGGTGGTGCTTCTCAAAGTT+GGG - Chr1:95727445-95727464 None:intergenic 45.0%
!! TTGGTGGTGCTTCTCAAAGT+TGG - Chr1:95727446-95727465 None:intergenic 45.0%
!! TTTGAGAAGCACCACCAACA+TGG + Chr1:95727448-95727467 MsG0180005755.01.T01:intron 45.0%
!!! CGAGTTTTGAGGGGAATGAA+AGG + Chr1:95724602-95724621 MsG0180005755.01.T01:intron 45.0%
!!! TTTTTTTTTTAAATCTTAAA+TGG - Chr1:95727113-95727132 None:intergenic 5.0%
AAGACCTAGCGAGACAGACA+CGG - Chr1:95723748-95723767 None:intergenic 50.0%
AAGGAGAGGAAGGGAAGGAA+AGG + Chr1:95724632-95724651 MsG0180005755.01.T01:intron 50.0%
ACTGGCACATGAGACTAGCA+TGG + Chr1:95724536-95724555 MsG0180005755.01.T01:intron 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + Chr1:95724026-95724045 MsG0180005755.01.T01:three_prime_UTR 50.0%
AGGAGAGGAAGGGAAGGAAA+GGG + Chr1:95724633-95724652 MsG0180005755.01.T01:intron 50.0%
AGGATAAGGAGAGGAAGGGA+AGG + Chr1:95724627-95724646 MsG0180005755.01.T01:intron 50.0%
CAGGAGGAAAGGTTATTCCC+AGG + Chr1:95726603-95726622 MsG0180005755.01.T01:intron 50.0%
CTGGGAATAACCTTTCCTCC+TGG - Chr1:95726605-95726624 None:intergenic 50.0%
GAAAGGAGATAGAGGGCTTG+TGG + Chr1:95724716-95724735 MsG0180005755.01.T01:intron 50.0%
GAAAGGGAGGGAAAGGAGAA+AGG + Chr1:95724649-95724668 MsG0180005755.01.T01:intron 50.0%
GGGTTTGCAAGGAAAGGAAG+AGG + Chr1:95724032-95724051 MsG0180005755.01.T01:three_prime_UTR 50.0%
GGTAAGTGACGCTCTCAAAG+TGG + Chr1:95723883-95723902 MsG0180005755.01.T01:intron 50.0%
GGTTTGCAAGGAAAGGAGGA+GGG + Chr1:95727989-95728008 MsG0180005755.01.T01:intron 50.0%
GTTTGCAAGGAAAGGAGGAG+GGG + Chr1:95727990-95728009 MsG0180005755.01.T01:intron 50.0%
TCAGCGTCGTGTTCTCTCAT+AGG + Chr1:95727709-95727728 MsG0180005755.01.T01:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + Chr1:95724021-95724040 MsG0180005755.01.T01:three_prime_UTR 50.0%
AGAGGAAGGGAAGGAAAGGG+AGG + Chr1:95724636-95724655 MsG0180005755.01.T01:intron 55.0%
AGGGAAGGAAAGGGAGGGAA+AGG + Chr1:95724642-95724661 MsG0180005755.01.T01:intron 55.0%
AGGGAGGGAAAGGAGAAAGG+AGG + Chr1:95724652-95724671 MsG0180005755.01.T01:intron 55.0%
AGGGGGTTTGCAAGGAAAGG+AGG + Chr1:95724029-95724048 MsG0180005755.01.T01:three_prime_UTR 55.0%
CAACGCAAGACCCTGAGTCA+AGG + Chr1:95727525-95727544 MsG0180005755.01.T01:intron 55.0%
GAGGAAGGGAAGGAAAGGGA+GGG + Chr1:95724637-95724656 MsG0180005755.01.T01:intron 55.0%
GGGAGGGAAAGGAGAAAGGA+GGG + Chr1:95724653-95724672 MsG0180005755.01.T01:intron 55.0%
GGGTTTGCAAGGAAAGGAGG+AGG + Chr1:95727988-95728007 MsG0180005755.01.T01:intron 55.0%
TGACTCAGGGTCTTGCGTTG+CGG - Chr1:95727525-95727544 None:intergenic 55.0%
TGTGGTTGCGGCGATAACAG+TGG - Chr1:95727501-95727520 None:intergenic 55.0%
TTGCGTTGCGGTTGTGGTTG+CGG - Chr1:95727513-95727532 None:intergenic 55.0%
AGGGTCTTGCGTTGCGGTTG+TGG - Chr1:95727519-95727538 None:intergenic 60.0%
AGTGCCGTGTCTGTCTCGCT+AGG + Chr1:95723741-95723760 MsG0180005755.01.T01:three_prime_UTR 60.0%
TGCGGTTGCGGCGATAACAG+CGG - Chr1:95723540-95723559 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 95723328 95728285 95723328 ID=MsG0180005755.01;Name=MsG0180005755.01
Chr1 mRNA 95723328 95728285 95723328 ID=MsG0180005755.01.T01;Parent=MsG0180005755.01;Name=MsG0180005755.01.T01;_AED=0.49;_eAED=0.49;_QI=64|1|1|1|0.5|0.33|3|709|57
Chr1 exon 95723328 95723883 95723328 ID=MsG0180005755.01.T01:exon:19388;Parent=MsG0180005755.01.T01
Chr1 exon 95723976 95724278 95723976 ID=MsG0180005755.01.T01:exon:19389;Parent=MsG0180005755.01.T01
Chr1 exon 95728198 95728285 95728198 ID=MsG0180005755.01.T01:exon:19390;Parent=MsG0180005755.01.T01
Chr1 five_prime_UTR 95723328 95723391 95723328 ID=MsG0180005755.01.T01:five_prime_utr;Parent=MsG0180005755.01.T01
Chr1 CDS 95723392 95723565 95723392 ID=MsG0180005755.01.T01:cds;Parent=MsG0180005755.01.T01
Chr1 three_prime_UTR 95723566 95723883 95723566 ID=MsG0180005755.01.T01:three_prime_utr;Parent=MsG0180005755.01.T01
Chr1 three_prime_UTR 95723976 95724278 95723976 ID=MsG0180005755.01.T01:three_prime_utr;Parent=MsG0180005755.01.T01
Chr1 three_prime_UTR 95728198 95728285 95728198 ID=MsG0180005755.01.T01:three_prime_utr;Parent=MsG0180005755.01.T01
Chr1 mRNA 95727341 95728197 95727341 ID=MsG0180005755.01.T02;Parent=MsG0180005755.01;Name=MsG0180005755.01.T02;_AED=0.50;_eAED=0.50;_QI=0|1|0.66|1|0.5|0.66|3|131|134
Chr1 exon 95727341 95727563 95727341 ID=MsG0180005755.01.T02:exon:19391;Parent=MsG0180005755.01.T02
Chr1 exon 95727806 95727852 95727806 ID=MsG0180005755.01.T02:exon:19392;Parent=MsG0180005755.01.T02
Chr1 exon 95727932 95728197 95727932 ID=MsG0180005755.01.T02:exon:19393;Parent=MsG0180005755.01.T02
Chr1 CDS 95727341 95727563 95727341 ID=MsG0180005755.01.T02:cds;Parent=MsG0180005755.01.T02
Chr1 CDS 95727806 95727852 95727806 ID=MsG0180005755.01.T02:cds;Parent=MsG0180005755.01.T02
Chr1 CDS 95727932 95728066 95727932 ID=MsG0180005755.01.T02:cds;Parent=MsG0180005755.01.T02
Chr1 three_prime_UTR 95728067 95728197 95728067 ID=MsG0180005755.01.T02:three_prime_utr;Parent=MsG0180005755.01.T02
Gene Sequence

>MsG0180005755.01.T01

ATGAGTTCTATACGGCAAACCATGTTAATGGCACTAACAGTTAAGTATGCATCATCCAATGTGCAAGCAGTTCATAATAGAAAACAAGCAAACCCAACTTTGAGAAGCACGAACATGGAATTTGGAAGGAGAAAACTCGTCTTGTCCGCTGTTATCGCCGCAACCGCAACTTAA

>MsG0180005755.01.T02

ATGAGTTCTATAGGGCAAACCATGTTAATGGCACTAACAGTTACGGTAAACAAGTATGCATCATCCAATGTGCAGGCAGTTCATAATAGAAAACAAGCAAACCCAACTTTGAGAAGCACCACCAACATGGAATTTGGAAGGAGAGGACTTGTCTTATCCACTGTTATCGCCGCAACCACAACCGCAACGCAAGACCCTGAGTCAAGGACATTGCTTCTTCAAAAATATTTGAAGAAAACAGAGGAAAACAAGGAGAAAAATGACAAAGAGAGGGTTGATAGTTATTACAAGCGTAATTACAAGGATTACTTTGAGTTCGTAGAAGGGGGTTTGCAAGGAAAGGAGGAGGGGAAGCTTTCAGAAGCAGAAAAGGGTATCCTTGATTGGCTTAAAGCTAACAAGTGA

Protein sequence

>MsG0180005755.01.T01

MSSIRQTMLMALTVKYASSNVQAVHNRKQANPTLRSTNMEFGRRKLVLSAVIAATAT*

>MsG0180005755.01.T02

MSSIGQTMLMALTVTVNKYASSNVQAVHNRKQANPTLRSTTNMEFGRRGLVLSTVIAATTTATQDPESRTLLLQKYLKKTEENKEKNDKERVDSYYKRNYKDYFEFVEGGLQGKEEGKLSEAEKGILDWLKANK*