AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047567.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047567.01.T01 MTR_4g130300 95.333 150 5 1 1 150 1 148 3.09e-87 251
MsG0880047567.01.T01 MTR_4g130300 90.909 88 6 1 1 88 1 86 2.18e-48 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047567.01.T01 AT2G24090 85.000 80 12 0 71 150 66 145 6.02e-44 142

Find 49 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATCAGCAAAGCGATTT+AGG 0.147866 8:+88175682 MsG0880047567.01.T01:intron
CAAGATTGAACAAACCATTT+TGG 0.208259 8:-88175793 None:intergenic
ATTTAGCATGGTCCTGTCTT+AGG 0.254793 8:+88177701 MsG0880047567.01.T01:three_prime_UTR
TTTCACGAGTCACTGATATT+TGG 0.257574 8:-88177800 None:intergenic
AGTGACTATGACAATGTAAT+TGG 0.287106 8:+88177610 MsG0880047567.01.T01:CDS
GAAATTGAGACTCTCCAAAA+TGG 0.323830 8:+88175779 MsG0880047567.01.T01:CDS
GGCATCAGCAAAGCGATTTA+GGG 0.327417 8:+88175683 MsG0880047567.01.T01:intron
CGATTTAGGGTTACCGGTGC+TGG 0.339311 8:+88175696 MsG0880047567.01.T01:CDS
TAGTAACCATGGAATGGTTT+TGG 0.345248 8:-88175521 None:intergenic
CAAATGGTGTAAAAGCATAT+TGG 0.367232 8:-88177737 None:intergenic
AGACATATGTAATGCTAAAC+AGG 0.381633 8:-88177897 None:intergenic
GCAAAGCGATTTAGGGTTAC+CGG 0.390331 8:+88175690 MsG0880047567.01.T01:CDS
GTAAATGTGAATAGTAGAAA+TGG 0.410222 8:-88177868 None:intergenic
TCAATTCCCTCAAACTCAAT+TGG 0.415519 8:+88175469 MsG0880047567.01.T01:CDS
GAATTGACATTGTTTGAGAA+AGG 0.445692 8:-88175453 None:intergenic
CCATGTTAAGAGTGTGTTTG+TGG 0.447071 8:-88175326 None:intergenic
TACTAGACCAATTGAGTTTG+AGG 0.451953 8:-88175476 None:intergenic
ACTAGACCAATTGAGTTTGA+GGG 0.466679 8:-88175475 None:intergenic
CTCACTATCGTATCCGCTAA+AGG 0.476723 8:+88175558 MsG0880047567.01.T01:CDS
AAAATAAAACAACTTTCAAA+TGG 0.481515 8:-88177753 None:intergenic
TTTCTGTTTACTTTCAGATA+CGG 0.499482 8:-88177640 None:intergenic
AGGATAGAATAGAACCTTGT+GGG 0.502470 8:-88175595 None:intergenic
AAAATCGTGCGTAGGAGAGC+AGG 0.513349 8:+88175720 MsG0880047567.01.T01:CDS
TTGATTGCGTTTCAATCAAG+TGG 0.518158 8:-88175208 None:intergenic
GTAAGATTTCTACGCGGTTG+TGG 0.520009 8:-88175249 None:intergenic
ACACACTCTTAACATGGCGT+TGG 0.535399 8:+88175332 MsG0880047567.01.T01:exon
CATGGCGTTGGCTTCTGCAA+CGG 0.537190 8:+88175344 MsG0880047567.01.T01:exon
TCTTAACCAAAACCATTCCA+TGG 0.537305 8:+88175515 MsG0880047567.01.T01:CDS
TGTAATGCTAAACAGGAAGA+TGG 0.539942 8:-88177890 None:intergenic
TTTCAATTTGTAGCCTTTAG+CGG 0.541342 8:-88175571 None:intergenic
AATTGTTATTACATAATACA+AGG 0.547514 8:-88177830 None:intergenic
GCGAGGAGAAGTAGTAACCA+TGG 0.549868 8:-88175532 None:intergenic
TGAAAGTCTGAAGGCGGCAA+AGG 0.556511 8:-88175379 None:intergenic
GACTTCACAAATCCTAAGAC+AGG 0.559536 8:-88177713 None:intergenic
CGAGTAGAGGAAGAAGAAGA+TGG 0.561226 8:-88175405 None:intergenic
GTTCTTGTAAATTGTGTGTG+AGG 0.563309 8:-88175304 None:intergenic
TTAGCATTACATATGTCTTG+TGG 0.568915 8:+88177902 MsG0880047567.01.T01:three_prime_UTR
CCACAAACACACTCTTAACA+TGG 0.593623 8:+88175326 MsG0880047567.01.T01:exon
TCTGAATTATGAATTTAGCA+TGG 0.600627 8:+88177689 MsG0880047567.01.T01:three_prime_UTR
GAGAAGTAGTAACCATGGAA+TGG 0.608033 8:-88175527 None:intergenic
AAGTCTGAAGGCGGCAAAGG+AGG 0.608560 8:-88175376 None:intergenic
GGCGGCAAAGGAGGAGACTG+TGG 0.617952 8:-88175367 None:intergenic
AGATGGCGGTGAAAGTCTGA+AGG 0.634963 8:-88175388 None:intergenic
ACTGAAAGAGACACGAGTAG+AGG 0.649199 8:-88175418 None:intergenic
GATACGATAGTGAGAGAGCG+AGG 0.653895 8:-88175549 None:intergenic
CTACAAATTGAAAACCCACA+AGG 0.682218 8:+88175581 MsG0880047567.01.T01:CDS
TGGCGGTGAAAGTCTGAAGG+CGG 0.693274 8:-88175385 None:intergenic
GTAGAGGAAGAAGAAGATGG+CGG 0.711470 8:-88175402 None:intergenic
GATTGAGTAAGATTTCTACG+CGG 0.814577 8:-88175255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTGTGAATT+AGG + Chr8:88176963-88176982 MsG0880047567.01.T01:intron 10.0%
!! AAAATAAAACAACTTTCAAA+TGG - Chr8:88177756-88177775 None:intergenic 15.0%
!!! AATTGTTATTACATAATACA+AGG - Chr8:88177833-88177852 None:intergenic 15.0%
!!! TAAATCAATTTTTTTCCTTA+TGG + Chr8:88177925-88177944 MsG0880047567.01.T01:three_prime_UTR 15.0%
!!! TTTATTTTACAAATGAATTG+AGG + Chr8:88177768-88177787 MsG0880047567.01.T01:three_prime_UTR 15.0%
!! ACGAACAATTATGTTAATTA+TGG + Chr8:88177528-88177547 MsG0880047567.01.T01:intron 20.0%
!! GACTAAAATAAAGTCATTAT+TGG + Chr8:88177182-88177201 MsG0880047567.01.T01:intron 20.0%
!! GATATTGTTAATTAGTAAGT+TGG + Chr8:88176641-88176660 MsG0880047567.01.T01:intron 20.0%
!! TAAATTAGCTATGAAATCAT+GGG + Chr8:88176877-88176896 MsG0880047567.01.T01:intron 20.0%
!! TTAAATTAGCTATGAAATCA+TGG + Chr8:88176876-88176895 MsG0880047567.01.T01:intron 20.0%
!! TTATTATCATCATTCTTCTT+TGG + Chr8:88175842-88175861 MsG0880047567.01.T01:intron 20.0%
!!! TAACTTGAATTTCATTTTTC+AGG + Chr8:88175662-88175681 MsG0880047567.01.T01:intron 20.0%
!!! TGATTGATAATTCATAAGAT+AGG - Chr8:88176500-88176519 None:intergenic 20.0%
!!! TTTGGTATTTGTTTACTTTT+TGG + Chr8:88175902-88175921 MsG0880047567.01.T01:intron 20.0%
! AAAAATGAACTACTTTCACA+TGG + Chr8:88175936-88175955 MsG0880047567.01.T01:intron 25.0%
! AAAATTTGAAAAGAGCAACT+TGG - Chr8:88177038-88177057 None:intergenic 25.0%
! AGTGATAAAAACTTGGTATT+TGG - Chr8:88176613-88176632 None:intergenic 25.0%
! ATACATAGTTAAACTTGAAG+TGG - Chr8:88175630-88175649 None:intergenic 25.0%
! ATCTCAGCAATAAATATTTG+CGG - Chr8:88177107-88177126 None:intergenic 25.0%
! GAATGATATTTGATATACTG+TGG + Chr8:88177397-88177416 MsG0880047567.01.T01:intron 25.0%
! GTAAATGTGAATAGTAGAAA+TGG - Chr8:88177871-88177890 None:intergenic 25.0%
! TACATAGTTAAACTTGAAGT+GGG - Chr8:88175629-88175648 None:intergenic 25.0%
! TAGCATTTAGATACAAGATA+GGG + Chr8:88175999-88176018 MsG0880047567.01.T01:intron 25.0%
! TATCTTGTATCTAAATGCTA+AGG - Chr8:88175999-88176018 None:intergenic 25.0%
! TCTACAAAAAGAATAAGAAG+AGG + Chr8:88175757-88175776 MsG0880047567.01.T01:CDS 25.0%
! TCTGAATTATGAATTTAGCA+TGG + Chr8:88177689-88177708 MsG0880047567.01.T01:three_prime_UTR 25.0%
! TGATAAATTACAACCTTCTA+TGG + Chr8:88177149-88177168 MsG0880047567.01.T01:intron 25.0%
! TGATATCAAAACGGTTTAAA+GGG - Chr8:88176416-88176435 None:intergenic 25.0%
! TTAGCATTTAGATACAAGAT+AGG + Chr8:88175998-88176017 MsG0880047567.01.T01:intron 25.0%
! TTTCTGTTTACTTTCAGATA+CGG - Chr8:88177643-88177662 None:intergenic 25.0%
!! AAGTTTTACTACATGAAAGA+GGG + Chr8:88176117-88176136 MsG0880047567.01.T01:intron 25.0%
!! AAGTTTTTATCACTCAATAG+CGG + Chr8:88176619-88176638 MsG0880047567.01.T01:intron 25.0%
!! AGTCATGTTGTTTGTTAATA+AGG + Chr8:88176678-88176697 MsG0880047567.01.T01:intron 25.0%
!! GACATTGTAGATATTTTGTT+TGG - Chr8:88176313-88176332 None:intergenic 25.0%
!! GTCATGTTGTTTGTTAATAA+GGG + Chr8:88176679-88176698 MsG0880047567.01.T01:intron 25.0%
!! TCATGTTGTTTGTTAATAAG+GGG + Chr8:88176680-88176699 MsG0880047567.01.T01:intron 25.0%
!!! ATTTTTAGCGAACTTTTTCT+TGG + Chr8:88177476-88177495 MsG0880047567.01.T01:intron 25.0%
!!! TTTTTAGCGAACTTTTTCTT+GGG + Chr8:88177477-88177496 MsG0880047567.01.T01:intron 25.0%
AGACATATGTAATGCTAAAC+AGG - Chr8:88177900-88177919 None:intergenic 30.0%
AGTGACTATGACAATGTAAT+TGG + Chr8:88177610-88177629 MsG0880047567.01.T01:CDS 30.0%
ATAGAATTTCATCACTTGGA+AGG + Chr8:88177301-88177320 MsG0880047567.01.T01:intron 30.0%
ATATATCATGTAGCTCAAGT+AGG + Chr8:88176346-88176365 MsG0880047567.01.T01:intron 30.0%
ATCTTAACAAAATGCCTTGA+TGG + Chr8:88177005-88177024 MsG0880047567.01.T01:intron 30.0%
CAGTATAGAATTTCATCACT+TGG + Chr8:88177297-88177316 MsG0880047567.01.T01:intron 30.0%
CGAGAGAGAAAAAAAGATTA+AGG - Chr8:88176550-88176569 None:intergenic 30.0%
GAATTGACATTGTTTGAGAA+AGG - Chr8:88175456-88175475 None:intergenic 30.0%
GATAATTCATAAGATAGGCA+AGG - Chr8:88176495-88176514 None:intergenic 30.0%
GCTATTGAGTGATAAAAACT+TGG - Chr8:88176620-88176639 None:intergenic 30.0%
GTGATATCAAAACGGTTTAA+AGG - Chr8:88176417-88176436 None:intergenic 30.0%
TCATTGCTTACAACTGTATT+TGG + Chr8:88175884-88175903 MsG0880047567.01.T01:intron 30.0%
TCCTATATGAACATGGAAAT+CGG - Chr8:88176388-88176407 None:intergenic 30.0%
TCTTAACAAAATGCCTTGAT+GGG + Chr8:88177006-88177025 MsG0880047567.01.T01:intron 30.0%
TTAGCATTACATATGTCTTG+TGG + Chr8:88177902-88177921 MsG0880047567.01.T01:three_prime_UTR 30.0%
TTTAGATACAAGATAGGGTA+TGG + Chr8:88176004-88176023 MsG0880047567.01.T01:intron 30.0%
TTTCAATTTGTAGCCTTTAG+CGG - Chr8:88175574-88175593 None:intergenic 30.0%
! AATTAGTAAGTTGGCTAACT+AGG + Chr8:88176650-88176669 MsG0880047567.01.T01:intron 30.0%
! AGGCATTTTGTTAAGATTTG+TGG - Chr8:88177002-88177021 None:intergenic 30.0%
! CAAATGGTGTAAAAGCATAT+TGG - Chr8:88177740-88177759 None:intergenic 30.0%
! CAAGATTGAACAAACCATTT+TGG - Chr8:88175796-88175815 None:intergenic 30.0%
! CAAGTTTTACTACATGAAAG+AGG + Chr8:88176116-88176135 MsG0880047567.01.T01:intron 30.0%
! TGCTGATTGTTTGTATTCAA+GGG + Chr8:88176781-88176800 MsG0880047567.01.T01:intron 30.0%
!!! GAATGGTTTTGGTTAAGAAT+TGG - Chr8:88175513-88175532 None:intergenic 30.0%
AAACAATCAGCAGAGATTTG+AGG - Chr8:88176773-88176792 None:intergenic 35.0%
AACCTTCTATGGAAAATGTG+AGG + Chr8:88177160-88177179 MsG0880047567.01.T01:intron 35.0%
ACCCATGAAAAATAGAGAGA+AGG - Chr8:88176249-88176268 None:intergenic 35.0%
ACTAGACCAATTGAGTTTGA+GGG - Chr8:88175478-88175497 None:intergenic 35.0%
ACTTATCACACAATTGAGTG+TGG + Chr8:88176523-88176542 MsG0880047567.01.T01:intron 35.0%
AGGATAGAATAGAACCTTGT+GGG - Chr8:88175598-88175617 None:intergenic 35.0%
ATGAAAAATAGAGAGAAGGC+AGG - Chr8:88176245-88176264 None:intergenic 35.0%
ATGAAATCATGGGTTTGAAC+TGG + Chr8:88176887-88176906 MsG0880047567.01.T01:intron 35.0%
CTACAAATTGAAAACCCACA+AGG + Chr8:88175581-88175600 MsG0880047567.01.T01:CDS 35.0%
CTTGATGCGTGATATCAAAA+CGG - Chr8:88176425-88176444 None:intergenic 35.0%
GAAATTGAGACTCTCCAAAA+TGG + Chr8:88175779-88175798 MsG0880047567.01.T01:CDS 35.0%
GACAGTAGAACAGAAAATTG+TGG - Chr8:88177085-88177104 None:intergenic 35.0%
GATTGAGTAAGATTTCTACG+CGG - Chr8:88175258-88175277 None:intergenic 35.0%
GTTCTTGTAAATTGTGTGTG+AGG - Chr8:88175307-88175326 None:intergenic 35.0%
GTTGTGAGATTAATGGAAGT+GGG + Chr8:88176160-88176179 MsG0880047567.01.T01:intron 35.0%
TACTAGACCAATTGAGTTTG+AGG - Chr8:88175479-88175498 None:intergenic 35.0%
TCAACCAAAATGCCACATTT+CGG - Chr8:88177452-88177471 None:intergenic 35.0%
TCAATTCCCTCAAACTCAAT+TGG + Chr8:88175469-88175488 MsG0880047567.01.T01:CDS 35.0%
TCAATTGAACTGAACTGTAG+TGG + Chr8:88177229-88177248 MsG0880047567.01.T01:intron 35.0%
TCATAAGATAGGCAAGGTAA+AGG - Chr8:88176489-88176508 None:intergenic 35.0%
TCCGATTTCCATGTTCATAT+AGG + Chr8:88176384-88176403 MsG0880047567.01.T01:intron 35.0%
TCTTAACCAAAACCATTCCA+TGG + Chr8:88175515-88175534 MsG0880047567.01.T01:CDS 35.0%
TGAAAAATAGAGAGAAGGCA+GGG - Chr8:88176244-88176263 None:intergenic 35.0%
TGTAATGCTAAACAGGAAGA+TGG - Chr8:88177893-88177912 None:intergenic 35.0%
TTGATTGCGTTTCAATCAAG+TGG - Chr8:88175211-88175230 None:intergenic 35.0%
TTTCACGAGTCACTGATATT+TGG - Chr8:88177803-88177822 None:intergenic 35.0%
! AAATCCAAGTGTTGTTAGGA+TGG - Chr8:88177368-88177387 None:intergenic 35.0%
! CTAAATGCTAAGGTACTCTT+GGG - Chr8:88175989-88176008 None:intergenic 35.0%
! CTAGAAATCCAAGTGTTGTT+AGG - Chr8:88177372-88177391 None:intergenic 35.0%
! CTGCTGATTGTTTGTATTCA+AGG + Chr8:88176780-88176799 MsG0880047567.01.T01:intron 35.0%
! TAGTAACCATGGAATGGTTT+TGG - Chr8:88175524-88175543 None:intergenic 35.0%
! TCTAAATGCTAAGGTACTCT+TGG - Chr8:88175990-88176009 None:intergenic 35.0%
! TTTTGTGCAATTGTTATGCG+TGG + Chr8:88176045-88176064 MsG0880047567.01.T01:intron 35.0%
!! AAAGAGGGTGACTTTTTCTT+GGG + Chr8:88176132-88176151 MsG0880047567.01.T01:intron 35.0%
!! GCCTTCTCTCTATTTTTCAT+GGG + Chr8:88176245-88176264 MsG0880047567.01.T01:intron 35.0%
!! TGCCTTCTCTCTATTTTTCA+TGG + Chr8:88176244-88176263 MsG0880047567.01.T01:intron 35.0%
!! TTTTAGGAAATCGGAATGGA+TGG + Chr8:88176187-88176206 MsG0880047567.01.T01:intron 35.0%
!!! GTTTTGGTTAAGAATTGGAG+CGG - Chr8:88175508-88175527 None:intergenic 35.0%
AACTTGGAATACACCCATCA+AGG - Chr8:88177022-88177041 None:intergenic 40.0%
ACAAGATAGGTCACTCTCTA+AGG - Chr8:88176708-88176727 None:intergenic 40.0%
ACATCCATCCTAACAACACT+TGG + Chr8:88177361-88177380 MsG0880047567.01.T01:intron 40.0%
ATCGGAATGGATGGAAAAGT+TGG + Chr8:88176196-88176215 MsG0880047567.01.T01:intron 40.0%
ATGGATGGAAAAGTTGGACT+TGG + Chr8:88176202-88176221 MsG0880047567.01.T01:intron 40.0%
ATTTAGCATGGTCCTGTCTT+AGG + Chr8:88177701-88177720 MsG0880047567.01.T01:three_prime_UTR 40.0%
CAACCAAAATGCCACATTTC+GGG - Chr8:88177451-88177470 None:intergenic 40.0%
CCACAAACACACTCTTAACA+TGG + Chr8:88175326-88175345 MsG0880047567.01.T01:exon 40.0%
CTCCTTCCATTTGACAAGAT+AGG - Chr8:88176721-88176740 None:intergenic 40.0%
CTTGTCAAATGGAAGGAGTA+GGG + Chr8:88176723-88176742 MsG0880047567.01.T01:intron 40.0%
GACCTATCTTGTCAAATGGA+AGG + Chr8:88176716-88176735 MsG0880047567.01.T01:intron 40.0%
GACTTCACAAATCCTAAGAC+AGG - Chr8:88177716-88177735 None:intergenic 40.0%
GAGAAGTAGTAACCATGGAA+TGG - Chr8:88175530-88175549 None:intergenic 40.0%
GAGGATAGAATAGAACCTTG+TGG - Chr8:88175599-88175618 None:intergenic 40.0%
GAGTGACCTATCTTGTCAAA+TGG + Chr8:88176712-88176731 MsG0880047567.01.T01:intron 40.0%
GGCATCATCCTATATGAACA+TGG - Chr8:88176395-88176414 None:intergenic 40.0%
GGTTGTGAGATTAATGGAAG+TGG + Chr8:88176159-88176178 MsG0880047567.01.T01:intron 40.0%
TACAAGATAGGGTATGGAAC+TGG + Chr8:88176010-88176029 MsG0880047567.01.T01:intron 40.0%
TCTTGTCAAATGGAAGGAGT+AGG + Chr8:88176722-88176741 MsG0880047567.01.T01:intron 40.0%
TTGTCAAATGGAAGGAGTAG+GGG + Chr8:88176724-88176743 MsG0880047567.01.T01:intron 40.0%
! AAGTGTTGTTAGGATGGATG+TGG - Chr8:88177362-88177381 None:intergenic 40.0%
! ACTTGAAGTGGGTTTGAAAG+AGG - Chr8:88175618-88175637 None:intergenic 40.0%
! AGTGTTGTTAGGATGGATGT+GGG - Chr8:88177361-88177380 None:intergenic 40.0%
! CCATGTTAAGAGTGTGTTTG+TGG - Chr8:88175329-88175348 None:intergenic 40.0%
! GGGTTAGGTTGTGAGATTAA+TGG + Chr8:88176153-88176172 MsG0880047567.01.T01:intron 40.0%
! GTCCTCACATTTTCCATAGA+AGG - Chr8:88177165-88177184 None:intergenic 40.0%
!! AAGAGGGTGACTTTTTCTTG+GGG + Chr8:88176133-88176152 MsG0880047567.01.T01:intron 40.0%
!! AGTAGGGGGCTTTAAGAATT+TGG + Chr8:88176739-88176758 MsG0880047567.01.T01:intron 40.0%
!! GAAAGAGGGTGACTTTTTCT+TGG + Chr8:88176131-88176150 MsG0880047567.01.T01:intron 40.0%
!! GTAGGGGGCTTTAAGAATTT+GGG + Chr8:88176740-88176759 MsG0880047567.01.T01:intron 40.0%
!! TGGCTTTTAGGAAATCGGAA+TGG + Chr8:88176183-88176202 MsG0880047567.01.T01:intron 40.0%
ACACACTCTTAACATGGCGT+TGG + Chr8:88175332-88175351 MsG0880047567.01.T01:exon 45.0%
ACTGAAAGAGACACGAGTAG+AGG - Chr8:88175421-88175440 None:intergenic 45.0%
AGGCATCAGCAAAGCGATTT+AGG + Chr8:88175682-88175701 MsG0880047567.01.T01:intron 45.0%
CGAGTAGAGGAAGAAGAAGA+TGG - Chr8:88175408-88175427 None:intergenic 45.0%
CTCACTATCGTATCCGCTAA+AGG + Chr8:88175558-88175577 MsG0880047567.01.T01:CDS 45.0%
GGCATCAGCAAAGCGATTTA+GGG + Chr8:88175683-88175702 MsG0880047567.01.T01:intron 45.0%
GTAAGATTTCTACGCGGTTG+TGG - Chr8:88175252-88175271 None:intergenic 45.0%
GTAGAGGAAGAAGAAGATGG+CGG - Chr8:88175405-88175424 None:intergenic 45.0%
GTGAGATTAATGGAAGTGGG+TGG + Chr8:88176163-88176182 MsG0880047567.01.T01:intron 45.0%
TGTCAAATGGAAGGAGTAGG+GGG + Chr8:88176725-88176744 MsG0880047567.01.T01:intron 45.0%
TGTTAGGATGGATGTGGGTT+TGG - Chr8:88177356-88177375 None:intergenic 45.0%
! AAGGTACTCTTGGGCAAGAA+AGG - Chr8:88175980-88175999 None:intergenic 45.0%
! AATGGAAGTGGGTGGCTTTT+AGG + Chr8:88176171-88176190 MsG0880047567.01.T01:intron 45.0%
! GCAAAGCGATTTAGGGTTAC+CGG + Chr8:88175690-88175709 MsG0880047567.01.T01:CDS 45.0%
! TCACCCGAAATGTGGCATTT+TGG + Chr8:88177445-88177464 MsG0880047567.01.T01:intron 45.0%
!! GCTTTAAGAATTTGGGAGGG+TGG + Chr8:88176747-88176766 MsG0880047567.01.T01:intron 45.0%
!! GGGGCTTTAAGAATTTGGGA+GGG + Chr8:88176744-88176763 MsG0880047567.01.T01:intron 45.0%
!! GGTGACTTTTTCTTGGGGTT+AGG + Chr8:88176138-88176157 MsG0880047567.01.T01:intron 45.0%
!! GTGGGTGGCTTTTAGGAAAT+CGG + Chr8:88176178-88176197 MsG0880047567.01.T01:intron 45.0%
AAAATCGTGCGTAGGAGAGC+AGG + Chr8:88175720-88175739 MsG0880047567.01.T01:CDS 50.0%
AGAAGCTCAAGTGTCTGGCT+TGG + Chr8:88177420-88177439 MsG0880047567.01.T01:intron 50.0%
GATACGATAGTGAGAGAGCG+AGG - Chr8:88175552-88175571 None:intergenic 50.0%
GCGAGGAGAAGTAGTAACCA+TGG - Chr8:88175535-88175554 None:intergenic 50.0%
GCTTGGATTCACCCGAAATG+TGG + Chr8:88177437-88177456 MsG0880047567.01.T01:intron 50.0%
GTGCTGGAAAAATCGTGCGT+AGG + Chr8:88175712-88175731 MsG0880047567.01.T01:CDS 50.0%
TGAAAGTCTGAAGGCGGCAA+AGG - Chr8:88175382-88175401 None:intergenic 50.0%
TGTGGAGAAGCTCAAGTGTC+TGG + Chr8:88177415-88177434 MsG0880047567.01.T01:intron 50.0%
! ACGCACGATTTTTCCAGCAC+CGG - Chr8:88175712-88175731 None:intergenic 50.0%
! AGATGGCGGTGAAAGTCTGA+AGG - Chr8:88175391-88175410 None:intergenic 50.0%
!! GGGGGCTTTAAGAATTTGGG+AGG + Chr8:88176743-88176762 MsG0880047567.01.T01:intron 50.0%
AAGTCTGAAGGCGGCAAAGG+AGG - Chr8:88175379-88175398 None:intergenic 55.0%
TGGCGGTGAAAGTCTGAAGG+CGG - Chr8:88175388-88175407 None:intergenic 55.0%
! CGATTTAGGGTTACCGGTGC+TGG + Chr8:88175696-88175715 MsG0880047567.01.T01:CDS 55.0%
!! CATGGCGTTGGCTTCTGCAA+CGG + Chr8:88175344-88175363 MsG0880047567.01.T01:exon 55.0%
GGCGGCAAAGGAGGAGACTG+TGG - Chr8:88175370-88175389 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 88175195 88177956 88175195 ID=MsG0880047567.01;Name=MsG0880047567.01
Chr8 mRNA 88175195 88177956 88175195 ID=MsG0880047567.01.T01;Parent=MsG0880047567.01;Name=MsG0880047567.01.T01;_AED=0.47;_eAED=0.47;_QI=150|1|1|1|1|1|3|284|150
Chr8 exon 88175195 88175602 88175195 ID=MsG0880047567.01.T01:exon:18607;Parent=MsG0880047567.01.T01
Chr8 exon 88175684 88175800 88175684 ID=MsG0880047567.01.T01:exon:18608;Parent=MsG0880047567.01.T01
Chr8 exon 88177595 88177956 88177595 ID=MsG0880047567.01.T01:exon:18609;Parent=MsG0880047567.01.T01
Chr8 five_prime_UTR 88175195 88175344 88175195 ID=MsG0880047567.01.T01:five_prime_utr;Parent=MsG0880047567.01.T01
Chr8 CDS 88175345 88175602 88175345 ID=MsG0880047567.01.T01:cds;Parent=MsG0880047567.01.T01
Chr8 CDS 88175684 88175800 88175684 ID=MsG0880047567.01.T01:cds;Parent=MsG0880047567.01.T01
Chr8 CDS 88177595 88177672 88177595 ID=MsG0880047567.01.T01:cds;Parent=MsG0880047567.01.T01
Chr8 three_prime_UTR 88177673 88177956 88177673 ID=MsG0880047567.01.T01:three_prime_utr;Parent=MsG0880047567.01.T01
Gene Sequence

>MsG0880047567.01.T01

ATGGCGTTGGCTTCTGCAACGGCCACAGTCTCCTCCTTTGCCGCCTTCAGACTTTCACCGCCATCTTCTTCTTCCTCTACTCGTGTCTCTTTCAGTTCAGTTAAATCACCTTTCTCAAACAATGTCAATTCCCTCAAACTCAATTGGTCTAGTAGTATTTCCGCTCCAATTCTTAACCAAAACCATTCCATGGTTACTACTTCTCCTCGCTCTCTCACTATCGTATCCGCTAAAGGCTACAAATTGAAAACCCACAAGGCATCAGCAAAGCGATTTAGGGTTACCGGTGCTGGAAAAATCGTGCGTAGGAGAGCAGGAAAGCAACATTTGCTCTACAAAAAGAATAAGAAGAGGAAATTGAGACTCTCCAAAATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCGTATCTGAAAGTAAACAGAAAAGCTACGTAA

Protein sequence

>MsG0880047567.01.T01

MALASATATVSSFAAFRLSPPSSSSSTRVSFSSVKSPFSNNVNSLKLNWSSSISAPILNQNHSMVTTSPRSLTIVSAKGYKLKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRKAT*