AlfalfaGEDB | MsG0880045748.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045748.01

KEGG: -
GO: GO:0005515
PFAM: PF14580

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045748.01.T01	RHN42130.1	87.066	518	28	6	1	513	1	484	0	812

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045748.01.T01	Q9SCQ7	59.686	382	120	5	9	379	1	359	4.54E-101	314

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045748.01.T01	A0A396GM71	87.066	518	28	6	1	513	1	484	0.0	812

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048964.01	MsG0880045748.01	0.802933	4.434823e-49	2.199905e-46
MsG0180000247.01	MsG0880045748.01	0.808779	2.618696e-50	1.510628e-47
MsG0180000470.01	MsG0880045748.01	0.802088	6.621221e-49	3.214661e-46
MsG0180000503.01	MsG0880045748.01	0.811285	7.555503e-51	4.657921e-48
MsG0180000669.01	MsG0880045748.01	0.807762	4.315164e-50	2.423745e-47
MsG0180000702.01	MsG0880045748.01	0.822486	2.308984e-53	1.935279e-50
MsG0180000703.01	MsG0880045748.01	0.838304	3.113252e-57	4.152498e-54
MsG0180001063.01	MsG0880045748.01	0.836647	8.277475e-57	1.049577e-53
MsG0180002842.01	MsG0880045748.01	0.807978	3.880893e-50	2.192257e-47
MsG0180003031.01	MsG0880045748.01	0.827602	1.429116e-54	1.386108e-51

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045748.01.T01	MTR_8g077860	86.100	518	28	7	1	513	1	479	0.0	796

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045748.01.T01	AT3G50690	59.686	382	120	5	9	379	1	359	4.62e-102	314

Showing 1 to 1 of 1 entries

Previous1Next

Find 151 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATGAGGAGGAAGATG+AGG	0.561013	8:-63705132	MsG0880045748.01.T01:CDS
AAATTGAAAATTGAAATCAA+CGG	0.659103	8:+63705850	None:intergenic
AACCGTCCAGAAGTACTCTT+GGG	0.530752	8:+63704717	None:intergenic
AACCTTTCTAGAAGGCTCGG+TGG	0.715516	8:+63705545	None:intergenic
ACGTCCTTGTACACACTTAA+CGG	0.405028	8:+63705574	None:intergenic
ACTAGCTTCACCTGCGCCAA+AGG	0.506930	8:+63705320	None:intergenic
ACTCCAACCCTCCAGCGATC+CGG	0.509400	8:+63705423	None:intergenic
AGAGACCGGTGAAGAGGAGA+TGG	0.577059	8:-63704625	MsG0880045748.01.T01:CDS
AGAGGAGATTGATGAGGAAG+AGG	0.475352	8:-63704874	MsG0880045748.01.T01:CDS
AGAGGATGATAATGAGGAGG+AGG	0.432389	8:-63705159	MsG0880045748.01.T01:CDS

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGACCAATTCAAAATCACA+CGG	+	Chr8:63705518-63705537	None:intergenic	30.0%
AGTTGAATTTGTCTGATAAC+CGG	-	Chr8:63703387-63703406	MsG0880045748.01.T01:intron	30.0%
CATCTTATCCAAATACTTCA+AGG	+	Chr8:63703609-63703628	None:intergenic	30.0%
GAACAAAAACAAGAGTTTCT+CGG	+	Chr8:63704312-63704331	None:intergenic	30.0%
GGTTGTAAATAGAGAATGAA+GGG	+	Chr8:63702961-63702980	None:intergenic	30.0%
GTAGGAATACTTGTATCATA+TGG	-	Chr8:63705581-63705600	MsG0880045748.01.T01:CDS	30.0%
TAAATAGAGAATGAAGGGAT+TGG	+	Chr8:63702956-63702975	None:intergenic	30.0%
TCAAATCAAGCAAATAAGAC+AGG	+	Chr8:63705375-63705394	None:intergenic	30.0%
TGATGTGATTATATGTTCCT+TGG	-	Chr8:63705072-63705091	MsG0880045748.01.T01:CDS	30.0%
AAAAACAAGAGTTTCTCGGA+AGG	+	Chr8:63704308-63704327	None:intergenic	35.0%

Showing 1 to 10 of 234 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	63702848	63706003	63702848	ID=MsG0880045748.01;Name=MsG0880045748.01
Chr8	mRNA	63702848	63706003	63702848	ID=MsG0880045748.01.T01;Parent=MsG0880045748.01;Name=MsG0880045748.01.T01;_AED=0.49;_eAED=0.55;_QI=295\|0\|0.25\|1\|1\|1\|4\|0\|513
Chr8	exon	63702848	63703032	63702848	ID=MsG0880045748.01.T01:exon:13335;Parent=MsG0880045748.01.T01
Chr8	exon	63703445	63703566	63703445	ID=MsG0880045748.01.T01:exon:13334;Parent=MsG0880045748.01.T01
Chr8	exon	63704359	63704441	63704359	ID=MsG0880045748.01.T01:exon:13333;Parent=MsG0880045748.01.T01
Chr8	exon	63704557	63706003	63704557	ID=MsG0880045748.01.T01:exon:13332;Parent=MsG0880045748.01.T01
Chr8	five_prime_UTR	63705709	63706003	63705709	ID=MsG0880045748.01.T01:five_prime_utr;Parent=MsG0880045748.01.T01
Chr8	CDS	63704557	63705708	63704557	ID=MsG0880045748.01.T01:cds;Parent=MsG0880045748.01.T01
Chr8	CDS	63704359	63704441	63704359	ID=MsG0880045748.01.T01:cds;Parent=MsG0880045748.01.T01
Chr8	CDS	63703445	63703566	63703445	ID=MsG0880045748.01.T01:cds;Parent=MsG0880045748.01.T01
Chr8	CDS	63702848	63703032	63702848	ID=MsG0880045748.01.T01:cds;Parent=MsG0880045748.01.T01

Gene Sequence

>MsG0880045748.01.T01

ATGAGATATACGATTTGGTATTTAATGGATGAGATCTGGGAGAAAGCTGTGGAAACGGCGTTAGAAGGAGAGAAAGATCATGTTTCAGCACGAACGTTAACACTTGACGGCGCCGTTAAGTGTGTACAAGGACGTTTACCACCACCGAGCCTTCTAGAAAGGTTCCAGAATCTTCAGCATCTTTCGATTGCAAACGTTGGTGTTTCATCGTTAGAGCAGTTCCCGAGGCTGCGGAGTTTGCAGAAGTTGAATTTGTCTGATAACCGGATCGCTGGAGGGTTGGAGTATTTAGTCGAAGCGGGTCTCGATTCGCTTCGAGATCTTGATTTATCGAATAATAGGATTCAGAATTTTGAAGATCTTGCGCCTTTGGCGCAGGTGAAGCTAGTTTCGTTGGATCTGTATGAGTGTCCTGTTACTAGGGTTAAGGATTATCGATCTAGGGTTTTTGGTTTGATTAAGTCCTTGAAGTATTTGGATAAGATGGATGCTGAGGAGAATGAGAGGCCGGAGAGTGATGATGAGGAAGAGGATGATAATGAGGAGGAGGATGAAAATGATGAGGAGGAAGATGAGGAGGATCCGGGGAGCGGTGAGATTGATGGAGGGGAGGAAGATCGAGTTTTTGGGGTGGAGAATGGGCATAGTGAAGGTGTTGATGGTGTTGTTGATGCTGATGAGGATGAGGAGAGTGATGAGGATGAGGAGGTGACGGAGAGTTCGAGGGGGAGGGTTAATGGGGTGAGTCATCAGGAGAACGGGTTTCATGTTGAGCCGGTTGATGTTGAGGATGATGATGATGAGGATTCTGGAGAGGAGATTGATGAGGAAGAGGGGGATGATGAGGATGTTGTTGAGGTGAATGAGATTGATGATAGTGATGATGATGAAGATGGGGTTGAGTTTGACGAGGATGATGATGACGAGGACGATGATGAGGTGGATAATGATGAAGGGGATTTTGCTGAGCCCAAGAGTACTTCTGGACGGTTGGTGAGTACTGAAGGTGAGATCGATGGGCACGAGCAAGGGGAGGAAGATGGAGATGAAGATGACAATGGAGAGACCGGTGAAGAGGAGATGGCGGTAGAAGAAGACGACGACGATGATGATGGAGATGATGACGATGGAGAGTTTGAAGATGATGATGAAATTGCTGAAGAGAAGGCGATGATTTTTGGTTCTCTTGATATGATGATGTTTGCTAACTTGATTAGAACTTTTGTTTGTGTTGTCTGGGTTTGTGATTTGCAAGGTTGGGACTTTTGTATTGTCTATCCTGAGTATCTGTTGTTTTCATGGACTGGTTCTGCTCTGATTGACCTGTCTTATTTGCTTGATTTGACTTGTATATTTGAAGAAAACGAAGATGGTGAAGAAGAAGAGGAAGTTGATGATGATGATGTTGATGACGATGATGCTCAAGAGGTGTTGCCTCCCGCCTCTTCACATCCCAAGAGGAAGAGGGACAATGATGATGAAGCTGATGAGGACGATGAAGATGAAGCAGCATTCACAAAGCCATCCAAGAAGCACCATTGA

Protein sequence

>MsG0880045748.01.T01

MRYTIWYLMDEIWEKAVETALEGEKDHVSARTLTLDGAVKCVQGRLPPPSLLERFQNLQHLSIANVGVSSLEQFPRLRSLQKLNLSDNRIAGGLEYLVEAGLDSLRDLDLSNNRIQNFEDLAPLAQVKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEEDDNEEEDENDEEEDEEDPGSGEIDGGEEDRVFGVENGHSEGVDGVVDADEDEESDEDEEVTESSRGRVNGVSHQENGFHVEPVDVEDDDDEDSGEEIDEEEGDDEDVVEVNEIDDSDDDEDGVEFDEDDDDEDDDEVDNDEGDFAEPKSTSGRLVSTEGEIDGHEQGEEDGDEDDNGETGEEEMAVEEDDDDDDGDDDDGEFEDDDEIAEEKAMIFGSLDMMMFANLIRTFVCVVWVCDLQGWDFCIVYPEYLLFSWTGSALIDLSYLLDLTCIFEENEDGEEEEEVDDDDVDDDDAQEVLPPASSHPKRKRDNDDEADEDDEDEAAFTKPSKKHH*