Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104610 | XP_013466379.1 | 96.429 | 280 | 8 | 1 | 1 | 280 | 1 | 278 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104610 | sp|Q9FK13|PDV1_ARATH | 51.648 | 273 | 117 | 6 | 12 | 280 | 11 | 272 | 9.18e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104610 | A0A072VQM9 | 96.429 | 280 | 8 | 1 | 1 | 280 | 1 | 278 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0104610 | -0.810129 | 1.343642e-50 | -8.615850e-47 |
| Msa0004060 | Msa0104610 | 0.812394 | 4.334802e-51 | -8.615850e-47 |
| Msa0006880 | Msa0104610 | 0.812046 | 5.162994e-51 | -8.615850e-47 |
| Msa0010020 | Msa0104610 | 0.800226 | 1.592116e-48 | -8.615850e-47 |
| Msa0015680 | Msa0104610 | 0.819311 | 1.241605e-52 | -8.615850e-47 |
| Msa0027390 | Msa0104610 | 0.802096 | 6.595830e-49 | -8.615850e-47 |
| Msa0038000 | Msa0104610 | 0.806722 | 7.163753e-50 | -8.615850e-47 |
| Msa0045490 | Msa0104610 | 0.801115 | 1.048263e-48 | -8.615850e-47 |
| Msa0055150 | Msa0104610 | 0.801416 | 9.096224e-49 | -8.615850e-47 |
| Msa0057140 | Msa0104610 | 0.802147 | 6.440324e-49 | -8.615850e-47 |
| Msa0069310 | Msa0104610 | 0.806285 | 8.859042e-50 | -8.615850e-47 |
| Msa0070430 | Msa0104610 | 0.803898 | 2.797921e-49 | -8.615850e-47 |
| Msa0090030 | Msa0104610 | 0.856605 | 2.874425e-62 | -8.615850e-47 |
| Msa0094010 | Msa0104610 | 0.810013 | 1.423133e-50 | -8.615850e-47 |
| Msa0097950 | Msa0104610 | 0.836461 | 9.233578e-57 | -8.615850e-47 |
| Msa0097990 | Msa0104610 | 0.805405 | 1.356257e-49 | -8.615850e-47 |
| Msa0098740 | Msa0104610 | 0.814240 | 1.704198e-51 | -8.615850e-47 |
| Msa0099510 | Msa0104610 | 0.836320 | 1.002848e-56 | -8.615850e-47 |
| Msa0104610 | Msa0108870 | 0.822750 | 2.004006e-53 | -8.615850e-47 |
| Msa0104610 | Msa0115500 | 0.800422 | 1.452294e-48 | -8.615850e-47 |
| Msa0104610 | Msa0131450 | 0.829366 | 5.358326e-55 | -8.615850e-47 |
| Msa0104610 | Msa0136380 | 0.833623 | 4.794516e-56 | -8.615850e-47 |
| Msa0104610 | Msa0138970 | -0.815257 | 1.014452e-51 | -8.615850e-47 |
| Msa0104610 | Msa0148120 | 0.801589 | 8.383895e-49 | -8.615850e-47 |
| Msa0104610 | Msa0155330 | 0.810657 | 1.033667e-50 | -8.615850e-47 |
| Msa0104610 | Msa0165300 | 0.801617 | 8.275905e-49 | -8.615850e-47 |
| Msa0104610 | Msa0165440 | 0.812920 | 3.325006e-51 | -8.615850e-47 |
| Msa0104610 | Msa0181520 | 0.800843 | 1.191405e-48 | -8.615850e-47 |
| Msa0104610 | Msa0182280 | 0.809162 | 2.168118e-50 | -8.615850e-47 |
| Msa0104610 | Msa0185590 | 0.804593 | 2.004841e-49 | -8.615850e-47 |
| Msa0104610 | Msa0198520 | 0.850756 | 1.381859e-60 | -8.615850e-47 |
| Msa0104610 | Msa0198530 | 0.853895 | 1.765779e-61 | -8.615850e-47 |
| Msa0104610 | Msa0208810 | 0.844695 | 6.446404e-59 | -8.615850e-47 |
| Msa0104610 | Msa0211650 | 0.809160 | 2.170475e-50 | -8.615850e-47 |
| Msa0104610 | Msa0212750 | -0.813673 | 2.271869e-51 | -8.615850e-47 |
| Msa0104610 | Msa0227400 | 0.806527 | 7.877991e-50 | -8.615850e-47 |
| Msa0104610 | Msa0239450 | 0.803494 | 3.394448e-49 | -8.615850e-47 |
| Msa0104610 | Msa0239940 | 0.825103 | 5.625672e-54 | -8.615850e-47 |
| Msa0104610 | Msa0240940 | 0.813927 | 1.998100e-51 | -8.615850e-47 |
| Msa0104610 | Msa0245850 | 0.823741 | 1.176682e-53 | -8.615850e-47 |
| Msa0104610 | Msa0252240 | 0.809715 | 1.649836e-50 | -8.615850e-47 |
| Msa0104610 | Msa0259270 | 0.824819 | 6.563236e-54 | -8.615850e-47 |
| Msa0104610 | Msa0267870 | 0.842451 | 2.565774e-58 | -8.615850e-47 |
| Msa0104610 | Msa0275400 | -0.846151 | 2.600434e-59 | -8.615850e-47 |
| Msa0104610 | Msa0288730 | 0.842132 | 3.116218e-58 | -8.615850e-47 |
| Msa0104610 | Msa0289400 | 0.821632 | 3.641824e-53 | -8.615850e-47 |
| Msa0104610 | Msa0291520 | 0.812893 | 3.371813e-51 | -8.615850e-47 |
| Msa0104610 | Msa0295000 | -0.834457 | 2.964513e-56 | -8.615850e-47 |
| Msa0104610 | Msa0308200 | 0.801100 | 1.055750e-48 | -8.615850e-47 |
| Msa0104610 | Msa0308220 | 0.821763 | 3.396490e-53 | -8.615850e-47 |
| Msa0104610 | Msa0310410 | 0.823238 | 1.542656e-53 | -8.615850e-47 |
| Msa0104610 | Msa0318720 | 0.809713 | 1.651286e-50 | -8.615850e-47 |
| Msa0104610 | Msa0321190 | 0.806679 | 7.318075e-50 | -8.615850e-47 |
| Msa0104610 | Msa0327410 | 0.807915 | 4.002477e-50 | -8.615850e-47 |
| Msa0104610 | Msa0343190 | 0.814115 | 1.815287e-51 | -8.615850e-47 |
| Msa0104610 | Msa0363620 | 0.817949 | 2.528526e-52 | -8.615850e-47 |
| Msa0104610 | Msa0381000 | 0.812108 | 5.004553e-51 | -8.615850e-47 |
| Msa0104610 | Msa0381080 | 0.805083 | 1.584389e-49 | -8.615850e-47 |
| Msa0104610 | Msa0415810 | 0.803532 | 3.333781e-49 | -8.615850e-47 |
| Msa0104610 | Msa0419520 | 0.820971 | 5.174158e-53 | -8.615850e-47 |
| Msa0104610 | Msa0428170 | 0.820836 | 5.557094e-53 | -8.615850e-47 |
| Msa0104610 | Msa0439890 | 0.823239 | 1.541612e-53 | -8.615850e-47 |
| Msa0104610 | Msa0458780 | 0.803306 | 3.713073e-49 | -8.615850e-47 |
| Msa0104610 | Msa0460930 | 0.817194 | 3.741273e-52 | -8.615850e-47 |
| Msa0104610 | Msa0461590 | 0.807418 | 5.103457e-50 | -8.615850e-47 |
| Msa0104610 | Msa0464900 | 0.800172 | 1.632541e-48 | -8.615850e-47 |
| Msa0104610 | Msa0469910 | -0.801596 | 8.355030e-49 | -8.615850e-47 |
| Msa0104610 | Msa0474700 | 0.817531 | 3.142057e-52 | -8.615850e-47 |
| Msa0104610 | Msa0478580 | 0.807217 | 5.630137e-50 | -8.615850e-47 |
| Msa0104610 | Msa0506940 | 0.828036 | 1.123813e-54 | -8.615850e-47 |
| Msa0104610 | Msa0527910 | 0.803617 | 3.200967e-49 | -8.615850e-47 |
| Msa0104610 | Msa0534080 | 0.802493 | 5.466528e-49 | -8.615850e-47 |
| Msa0104610 | Msa0536790 | 0.844399 | 7.743448e-59 | -8.615850e-47 |
| Msa0104610 | Msa0542160 | 0.800579 | 1.349031e-48 | -8.615850e-47 |
| Msa0104610 | Msa0545060 | 0.827415 | 1.584126e-54 | -8.615850e-47 |
| Msa0104610 | Msa0547400 | 0.814011 | 1.914091e-51 | -8.615850e-47 |
| Msa0104610 | Msa0550570 | 0.800757 | 1.240932e-48 | -8.615850e-47 |
| Msa0104610 | Msa0560470 | 0.803410 | 3.532688e-49 | -8.615850e-47 |
| Msa0104610 | Msa0578090 | 0.854935 | 8.835581e-62 | -8.615850e-47 |
| Msa0104610 | Msa0580950 | 0.817246 | 3.641663e-52 | -8.615850e-47 |
| Msa0104610 | Msa0583510 | 0.807055 | 6.093129e-50 | -8.615850e-47 |
| Msa0104610 | Msa0586850 | 0.848058 | 7.804390e-60 | -8.615850e-47 |
| Msa0104610 | Msa0588120 | 0.800952 | 1.132237e-48 | -8.615850e-47 |
| Msa0104610 | Msa0602120 | 0.819659 | 1.034267e-52 | -8.615850e-47 |
| Msa0104610 | Msa0609970 | 0.800624 | 1.320619e-48 | -8.615850e-47 |
| Msa0104610 | Msa0619180 | 0.800730 | 1.256599e-48 | -8.615850e-47 |
| Msa0104610 | Msa0619920 | 0.804996 | 1.652110e-49 | -8.615850e-47 |
| Msa0104610 | Msa0620330 | 0.808845 | 2.535601e-50 | -8.615850e-47 |
| Msa0104610 | Msa0626680 | 0.851660 | 7.677182e-61 | -8.615850e-47 |
| Msa0104610 | Msa0639120 | 0.802680 | 5.002060e-49 | -8.615850e-47 |
| Msa0104610 | Msa0641140 | 0.817068 | 3.995171e-52 | -8.615850e-47 |
| Msa0104610 | Msa0643250 | 0.810289 | 1.241272e-50 | -8.615850e-47 |
| Msa0104610 | Msa0647930 | 0.807823 | 4.186778e-50 | -8.615850e-47 |
| Msa0104610 | Msa0651150 | 0.812680 | 3.753758e-51 | -8.615850e-47 |
| Msa0104610 | Msa0652300 | 0.831352 | 1.752195e-55 | -8.615850e-47 |
| Msa0104610 | Msa0656580 | 0.825089 | 5.668586e-54 | -8.615850e-47 |
| Msa0104610 | Msa0664760 | 0.844032 | 9.717804e-59 | -8.615850e-47 |
| Msa0104610 | Msa0679680 | 0.839886 | 1.211772e-57 | -8.615850e-47 |
| Msa0104610 | Msa0694840 | 0.807719 | 4.406527e-50 | -8.615850e-47 |
| Msa0104610 | Msa0704800 | 0.828516 | 8.607984e-55 | -8.615850e-47 |
| Msa0104610 | Msa0706390 | 0.831660 | 1.471994e-55 | -8.615850e-47 |
| Msa0104610 | Msa0713460 | 0.814171 | 1.764869e-51 | -8.615850e-47 |
| Msa0104610 | Msa0735310 | 0.810983 | 8.788037e-51 | -8.615850e-47 |
| Msa0104610 | Msa0735620 | -0.804472 | 2.125370e-49 | -8.615850e-47 |
| Msa0104610 | Msa0737800 | 0.844016 | 9.812236e-59 | -8.615850e-47 |
| Msa0104610 | Msa0744090 | 0.838015 | 3.695864e-57 | -8.615850e-47 |
| Msa0104610 | Msa0744100 | 0.802905 | 4.493672e-49 | -8.615850e-47 |
| Msa0104610 | Msa0754720 | -0.804826 | 1.792984e-49 | -8.615850e-47 |
| Msa0104610 | Msa0756930 | 0.818695 | 1.714080e-52 | -8.615850e-47 |
| Msa0104610 | Msa0784620 | 0.823149 | 1.617837e-53 | -8.615850e-47 |
| Msa0104610 | Msa0791820 | 0.808358 | 3.221332e-50 | -8.615850e-47 |
| Msa0104610 | Msa0814250 | 0.815191 | 1.048910e-51 | -8.615850e-47 |
| Msa0104610 | Msa0814320 | 0.813157 | 2.950849e-51 | -8.615850e-47 |
| Msa0104610 | Msa0814630 | -0.823186 | 1.586076e-53 | -8.615850e-47 |
| Msa0104610 | Msa0817260 | 0.849592 | 2.929370e-60 | -8.615850e-47 |
| Msa0104610 | Msa0817270 | 0.843859 | 1.081324e-58 | -8.615850e-47 |
| Msa0104610 | Msa0824730 | 0.849092 | 4.036808e-60 | -8.615850e-47 |
| Msa0104610 | Msa0825270 | 0.810333 | 1.214191e-50 | -8.615850e-47 |
| Msa0104610 | Msa0825280 | 0.839660 | 1.387560e-57 | -8.615850e-47 |
| Msa0104610 | Msa0836500 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0104610 | Msa0850710 | 0.816462 | 5.463049e-52 | -8.615850e-47 |
| Msa0104610 | Msa0851470 | 0.831939 | 1.255799e-55 | -8.615850e-47 |
| Msa0104610 | Msa0855160 | -0.817524 | 3.154401e-52 | -8.615850e-47 |
| Msa0104610 | Msa0863370 | 0.803804 | 2.926372e-49 | -8.615850e-47 |
| Msa0104610 | Msa0881580 | 0.817288 | 3.564306e-52 | -8.615850e-47 |
| Msa0104610 | Msa0888940 | 0.803870 | 2.836128e-49 | -8.615850e-47 |
| Msa0104610 | Msa0908170 | 0.816305 | 5.921483e-52 | -8.615850e-47 |
| Msa0104610 | Msa0963020 | 0.811787 | 5.878614e-51 | -8.615850e-47 |
| Msa0104610 | Msa0980940 | 0.817346 | 3.458684e-52 | -8.615850e-47 |
| Msa0104610 | Msa0981430 | 0.817608 | 3.019239e-52 | -8.615850e-47 |
| Msa0104610 | Msa0993530 | 0.808423 | 3.120369e-50 | -8.615850e-47 |
| Msa0104610 | Msa1001350 | 0.800239 | 1.581904e-48 | -8.615850e-47 |
| Msa0104610 | Msa1025940 | 0.801004 | 1.104758e-48 | -8.615850e-47 |
| Msa0104610 | Msa1032170 | 0.811665 | 6.247745e-51 | -8.615850e-47 |
| Msa0104610 | Msa1040800 | 0.812638 | 3.833180e-51 | -8.615850e-47 |
| Msa0104610 | Msa1041520 | 0.846338 | 2.312512e-59 | -8.615850e-47 |
| Msa0104610 | Msa1048700 | 0.809288 | 2.037867e-50 | -8.615850e-47 |
| Msa0104610 | Msa1069660 | -0.802000 | 6.905695e-49 | -8.615850e-47 |
| Msa0104610 | Msa1081560 | 0.830937 | 2.216363e-55 | -8.615850e-47 |
| Msa0104610 | Msa1083880 | 0.802140 | 6.462644e-49 | -8.615850e-47 |
| Msa0104610 | Msa1087510 | -0.801406 | 9.139555e-49 | -8.615850e-47 |
| Msa0104610 | Msa1093330 | 0.831484 | 1.626612e-55 | -8.615850e-47 |
| Msa0104610 | Msa1125470 | 0.800984 | 1.115376e-48 | -8.615850e-47 |
| Msa0104610 | Msa1125550 | 0.811033 | 8.569056e-51 | -8.615850e-47 |
| Msa0104610 | Msa1127130 | 0.826564 | 2.531186e-54 | -8.615850e-47 |
| Msa0104610 | Msa1128330 | 0.824888 | 6.324454e-54 | -8.615850e-47 |
| Msa0104610 | Msa1158770 | 0.803599 | 3.228005e-49 | -8.615850e-47 |
| Msa0104610 | Msa1166410 | 0.825358 | 4.895214e-54 | -8.615850e-47 |
| Msa0104610 | Msa1171830 | 0.804529 | 2.068316e-49 | -8.615850e-47 |
| Msa0104610 | Msa1184370 | 0.809665 | 1.691393e-50 | -8.615850e-47 |
| Msa0104610 | Msa1193950 | -0.812730 | 3.659194e-51 | -8.615850e-47 |
| Msa0104610 | Msa1198880 | 0.807264 | 5.501898e-50 | -8.615850e-47 |
| Msa0104610 | Msa1201830 | 0.817630 | 2.985133e-52 | -8.615850e-47 |
| Msa0104610 | Msa1203900 | 0.817214 | 3.703951e-52 | -8.615850e-47 |
| Msa0104610 | Msa1207730 | 0.802397 | 5.719937e-49 | -8.615850e-47 |
| Msa0104610 | Msa1211050 | -0.815163 | 1.063991e-51 | -8.615850e-47 |
| Msa0104610 | Msa1226610 | 0.812186 | 4.812956e-51 | -8.615850e-47 |
| Msa0104610 | Msa1246530 | -0.822172 | 2.730350e-53 | -8.615850e-47 |
| Msa0104610 | Msa1280620 | 0.809847 | 1.545547e-50 | -8.615850e-47 |
| Msa0104610 | Msa1294840 | 0.808748 | 2.659526e-50 | -8.615850e-47 |
| Msa0104610 | Msa1294960 | 0.815874 | 7.392066e-52 | -8.615850e-47 |
| Msa0104610 | Msa1300860 | 0.842997 | 1.836467e-58 | -8.615850e-47 |
| Msa0104610 | Msa1340040 | -0.811779 | 5.901674e-51 | -8.615850e-47 |
| Msa0104610 | Msa1340830 | 0.804047 | 2.605031e-49 | -8.615850e-47 |
| Msa0104610 | Msa1344850 | 0.825882 | 3.678384e-54 | -8.615850e-47 |
| Msa0104610 | Msa1355700 | 0.805940 | 1.047034e-49 | -8.615850e-47 |
| Msa0104610 | Msa1360890 | -0.800158 | 1.643168e-48 | -8.615850e-47 |
| Msa0104610 | Msa1363700 | 0.838172 | 3.366669e-57 | -8.615850e-47 |
| Msa0104610 | Msa1365860 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa0104610 | Msa1371090 | 0.829331 | 5.465018e-55 | -8.615850e-47 |
| Msa0104610 | Msa1372310 | 0.807097 | 5.970948e-50 | -8.615850e-47 |
| Msa0104610 | Msa1389680 | 0.822807 | 1.944422e-53 | -8.615850e-47 |
| Msa0104610 | Msa1390230 | 0.825052 | 5.782494e-54 | -8.615850e-47 |
| Msa0104610 | Msa1390310 | 0.800798 | 1.217072e-48 | -8.615850e-47 |
| Msa0104610 | Msa1398860 | 0.815636 | 8.353809e-52 | -8.615850e-47 |
| Msa0104610 | Msa1404540 | 0.811444 | 6.979308e-51 | -8.615850e-47 |
| Msa0104610 | Msa1408150 | 0.808293 | 3.325608e-50 | -8.615850e-47 |
| Msa0104610 | Msa1408760 | -0.801491 | 8.782858e-49 | -8.615850e-47 |
| Msa0104610 | Msa1431060 | 0.814964 | 1.177905e-51 | -8.615850e-47 |
| Msa0104610 | Msa1435770 | 0.821155 | 4.693400e-53 | -8.615850e-47 |
| Msa0104610 | Msa1442220 | -0.840915 | 6.519350e-58 | -8.615850e-47 |
| Msa0104610 | Msa1452480 | 0.839972 | 1.150578e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104610 | MtrunA17_Chr1g0158981 | 96.429 | 280 | 8 | 1 | 1 | 280 | 1 | 278 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104610 | AT5G53280.1 | 51.648 | 273 | 117 | 6 | 12 | 280 | 11 | 272 | 9.33e-86 | 258 |
Find 88 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCCACATATGGATATT+AGG | 0.166622 | 1_3:+12632131 | None:intergenic |
| CTAATCATGAACATTCATTT+AGG | 0.181348 | 1_3:-12632806 | Msa0104610:CDS |
| AAACTCTCATCTGTACATTT+TGG | 0.205115 | 1_3:+12632993 | None:intergenic |
| TGTTTGCCGGTTCACACTTC+TGG | 0.259306 | 1_3:-12632393 | Msa0104610:intron |
| GTTTGGTGTCATTTGATATA+TGG | 0.269850 | 1_3:-12632471 | Msa0104610:three_prime_UTR |
| ATCTCTTGGGTTGGATCATA+TGG | 0.284716 | 1_3:-12632898 | Msa0104610:CDS |
| GAATTCAGAGTTCAATATTC+TGG | 0.287382 | 1_3:-12632022 | Msa0104610:three_prime_UTR |
| AAGCGATTCTCGAGAAAATC+TGG | 0.314078 | 1_3:-12637087 | Msa0104610:CDS |
| TGACAAATGGGTGTGGGATA+TGG | 0.320423 | 1_3:-12632057 | Msa0104610:three_prime_UTR |
| GATCTGTAGGTTCTGTTTGC+CGG | 0.323385 | 1_3:-12632406 | Msa0104610:three_prime_UTR |
| AAATCCACATATGGATATTA+GGG | 0.324519 | 1_3:+12632132 | None:intergenic |
| AATGACACCAAACTCCCTTT+TGG | 0.327780 | 1_3:+12632481 | None:intergenic |
| GAAGGGAGAATATGCTAAAA+TGG | 0.328995 | 1_3:-12632530 | Msa0104610:three_prime_UTR |
| TAATCATGAACATTCATTTA+GGG | 0.333045 | 1_3:-12632805 | Msa0104610:CDS |
| AGATGCTGCGATTGCACGTC+TGG | 0.365548 | 1_3:-12633153 | Msa0104610:CDS |
| CGCGTTTCGATGAAATGAAA+TGG | 0.384371 | 1_3:-12637132 | Msa0104610:exon |
| CTTTAGTGAGTTTGCCCAAA+AGG | 0.387073 | 1_3:-12632496 | Msa0104610:three_prime_UTR |
| GATATTAGGGAATCATTTGT+TGG | 0.387583 | 1_3:+12632145 | None:intergenic |
| ATTAGATCTCTTCCCTTTCT+CGG | 0.390494 | 1_3:+12632965 | None:intergenic |
| TCTTCGTCCAGTGCCCATTC+TGG | 0.392364 | 1_3:-12632726 | Msa0104610:CDS |
| AGTTTGCCCAAAAGGGAGTT+TGG | 0.392998 | 1_3:-12632488 | Msa0104610:three_prime_UTR |
| ATGCAACCGGTGCAAACTTT+CGG | 0.401409 | 1_3:+12632436 | None:intergenic |
| GAGAAAATGAGATCGTGAAA+TGG | 0.415279 | 1_3:+12637030 | None:intergenic |
| ATTAACACAAAATCCACATA+TGG | 0.416515 | 1_3:+12632123 | None:intergenic |
| TACAAAGGAGGTCTGAAATC+TGG | 0.423596 | 1_3:-12632559 | Msa0104610:three_prime_UTR |
| GTCTGGTACCATATGACAAA+TGG | 0.440290 | 1_3:-12632070 | Msa0104610:three_prime_UTR |
| TCATTTCACCACATTGATAG+AGG | 0.444384 | 1_3:+12632665 | None:intergenic |
| AACATCCAAGTTACCAGAAT+GGG | 0.447938 | 1_3:+12632713 | None:intergenic |
| TGCTTTGCTTCAGTTGCAGC+AGG | 0.453364 | 1_3:-12632832 | Msa0104610:CDS |
| TGTGAAGAAATCTCTTGGGT+TGG | 0.467925 | 1_3:-12632907 | Msa0104610:CDS |
| TCCCACACCCATTTGTCATA+TGG | 0.468114 | 1_3:+12632062 | None:intergenic |
| CATTTGTTGGATTAATAAAG+AGG | 0.472326 | 1_3:+12632158 | None:intergenic |
| CAGATCAACTATTATGCAAC+CGG | 0.473951 | 1_3:+12632423 | None:intergenic |
| GATCATATGGGCGGAATAGT+AGG | 0.483113 | 1_3:-12632885 | Msa0104610:CDS |
| CAGTGCCCATTCTGGTAACT+TGG | 0.483764 | 1_3:-12632718 | Msa0104610:CDS |
| TTTAGTGAGTTTGCCCAAAA+GGG | 0.485863 | 1_3:-12632495 | Msa0104610:three_prime_UTR |
| AACACGCTGCTGAGTCTGAA+TGG | 0.492537 | 1_3:+12633181 | None:intergenic |
| AGGAGGTCTGAAATCTGGTC+TGG | 0.503185 | 1_3:-12632554 | Msa0104610:three_prime_UTR |
| TATGAGAAGAACAGCTCACT+TGG | 0.505741 | 1_3:-12632754 | Msa0104610:CDS |
| AATGAAATGGAACACGCAAA+TGG | 0.509169 | 1_3:-12637119 | Msa0104610:CDS |
| AATAGTAGGAAATGCTGCTC+TGG | 0.514034 | 1_3:-12632871 | Msa0104610:CDS |
| GGTAATAACGGTAACGGTAA+CGG | 0.519732 | 1_3:-12636935 | Msa0104610:CDS |
| ACTTGTTCTTGCAATGAGAC+TGG | 0.528222 | 1_3:-12633120 | Msa0104610:CDS |
| TTTCATCTTGATTACAAAGG+AGG | 0.529591 | 1_3:-12632571 | Msa0104610:three_prime_UTR |
| TAAACTAAAGCACACAAGAA+AGG | 0.538645 | 1_3:+12632338 | None:intergenic |
| TTGCATAATAGTTGATCTGT+AGG | 0.541463 | 1_3:-12632419 | Msa0104610:three_prime_UTR |
| CCGTTACCGTTATTACCCTC+CGG | 0.542161 | 1_3:+12636941 | None:intergenic |
| TCACATGAAAATACTCGAGC+TGG | 0.544030 | 1_3:+12636804 | None:intergenic |
| TATGCACCAGAAGTGTGAAC+CGG | 0.545680 | 1_3:+12632387 | None:intergenic |
| AAACATCCAAGTTACCAGAA+TGG | 0.546101 | 1_3:+12632712 | None:intergenic |
| TCTGGTACCATATGACAAAT+GGG | 0.548131 | 1_3:-12632069 | Msa0104610:three_prime_UTR |
| TGTACTAGTGAACAACTGTC+TGG | 0.549156 | 1_3:-12632087 | Msa0104610:three_prime_UTR |
| TCTGAAATCTGGTCTGGTGA+AGG | 0.550178 | 1_3:-12632548 | Msa0104610:three_prime_UTR |
| TGAGGGTTTGCTTGATGACA+AGG | 0.550438 | 1_3:+12637213 | None:intergenic |
| CTGAAATCTGGTCTGGTGAA+GGG | 0.553288 | 1_3:-12632547 | Msa0104610:three_prime_UTR |
| TCTCTTGGGTTGGATCATAT+GGG | 0.556457 | 1_3:-12632897 | Msa0104610:CDS |
| AAGACTCTTCGCTTCATGAA+CGG | 0.561836 | 1_3:+12636862 | None:intergenic |
| ACGACACCGGAGGGTAATAA+CGG | 0.566312 | 1_3:-12636947 | Msa0104610:CDS |
| GATTCCCTAATATCCATATG+TGG | 0.585016 | 1_3:-12632136 | Msa0104610:three_prime_UTR |
| TTGTTTCATCTTGATTACAA+AGG | 0.589749 | 1_3:-12632574 | Msa0104610:three_prime_UTR |
| AGCGATTCTCGAGAAAATCT+GGG | 0.598287 | 1_3:-12637086 | Msa0104610:CDS |
| CAAGTTACCAGAATGGGCAC+TGG | 0.598404 | 1_3:+12632719 | None:intergenic |
| TACCATATGACAAATGGGTG+TGG | 0.603819 | 1_3:-12632064 | Msa0104610:three_prime_UTR |
| GTCTTCAAGATTCTCAAGCG+CGG | 0.605195 | 1_3:+12636826 | None:intergenic |
| TCATCAACATCGTCATTCAC+CGG | 0.607132 | 1_3:+12636887 | None:intergenic |
| TTCAGAGTTCAATATTCTGG+AGG | 0.608292 | 1_3:-12632019 | None:intergenic |
| TTGCCACCGAAAGTTTGCAC+CGG | 0.617396 | 1_3:-12632442 | Msa0104610:three_prime_UTR |
| ATCAATGTGGTGAAATGACG+AGG | 0.620196 | 1_3:-12632660 | Msa0104610:three_prime_UTR |
| GTTTGCTTGATGACAAGGGA+AGG | 0.621517 | 1_3:+12637218 | None:intergenic |
| AAGCAAAGCAATCATACTAA+CGG | 0.628861 | 1_3:+12632845 | None:intergenic |
| TGTTGCTAGCGAAACGACAC+CGG | 0.631231 | 1_3:-12636960 | Msa0104610:CDS |
| ACCATATGACAAATGGGTGT+GGG | 0.633003 | 1_3:-12632063 | Msa0104610:three_prime_UTR |
| TGATGAAGAATGAAGAGTGA+GGG | 0.640670 | 1_3:+12637196 | None:intergenic |
| AGAATACATTACTGTTGCAA+TGG | 0.641597 | 1_3:-12632245 | Msa0104610:three_prime_UTR |
| GGGAGAATATGCTAAAATGG+AGG | 0.642851 | 1_3:-12632527 | Msa0104610:three_prime_UTR |
| TGCTAGCGAAACGACACCGG+AGG | 0.643973 | 1_3:-12636957 | Msa0104610:CDS |
| TTGTAATCAAGATGAAACAA+AGG | 0.647840 | 1_3:+12632577 | None:intergenic |
| GCTAGCGAAACGACACCGGA+GGG | 0.647863 | 1_3:-12636956 | Msa0104610:CDS |
| TGTTCTTGCAATGAGACTGG+CGG | 0.651653 | 1_3:-12633117 | Msa0104610:CDS |
| CCGGAGGGTAATAACGGTAA+CGG | 0.657670 | 1_3:-12636941 | Msa0104610:CDS |
| CAACCGGTGCAAACTTTCGG+TGG | 0.662384 | 1_3:+12632439 | None:intergenic |
| GAGGGTTTGCTTGATGACAA+GGG | 0.684665 | 1_3:+12637214 | None:intergenic |
| CTTGGGTTGGATCATATGGG+CGG | 0.685255 | 1_3:-12632894 | Msa0104610:CDS |
| GGATTAAACCTCTATCAATG+TGG | 0.708809 | 1_3:-12632673 | Msa0104610:three_prime_UTR |
| TCAATGTGGTGAAATGACGA+GGG | 0.709734 | 1_3:-12632659 | Msa0104610:three_prime_UTR |
| ATGAGACTGGCGGAACATCG+TGG | 0.714608 | 1_3:-12633107 | Msa0104610:CDS |
| GTGATGAAGAATGAAGAGTG+AGG | 0.728235 | 1_3:+12637195 | None:intergenic |
| GCAGATGTACATGATGCTAG+CGG | 0.758662 | 1_3:-12633044 | Msa0104610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTACAAAATTATG+TGG | - | chr1_3:12632681-12632700 | Msa0104610:exon | 10.0% |
| !!! | TACAATTTTTTTTTTTTTTG+AGG | - | chr1_3:12632806-12632825 | Msa0104610:CDS | 10.0% |
| !!! | ACAATTTTTTTTTTTTTTGA+GGG | - | chr1_3:12632807-12632826 | Msa0104610:CDS | 10.0% |
| !!! | TTACAATTTTTTTTTTTTTG+AGG | - | chr1_3:12632838-12632857 | Msa0104610:CDS | 10.0% |
| !!! | TACAATTTTTTTTTTTTTGA+GGG | - | chr1_3:12632839-12632858 | Msa0104610:CDS | 10.0% |
| !! | TGATAAAGTAATTATTTAAT+AGG | - | chr1_3:12632913-12632932 | Msa0104610:CDS | 10.0% |
| !! | GATAAAGTAATTATTTAATA+GGG | - | chr1_3:12632914-12632933 | Msa0104610:CDS | 10.0% |
| !!! | AGAGATTTTTTATTTTTTTT+TGG | + | chr1_3:12635433-12635452 | None:intergenic | 10.0% |
| !!! | TGACTTAATTATGTTTTAAT+CGG | - | chr1_3:12632955-12632974 | Msa0104610:CDS | 15.0% |
| !!! | TCTACAATAAAATTGTATTT+TGG | + | chr1_3:12633192-12633211 | None:intergenic | 15.0% |
| !! | ACTATTATTAATGATTGAAT+AGG | - | chr1_3:12633217-12633236 | Msa0104610:intron | 15.0% |
| !! | CTATTATTAATGATTGAATA+GGG | - | chr1_3:12633218-12633237 | Msa0104610:intron | 15.0% |
| !!! | GTTATATATTGTTCATTTTA+AGG | + | chr1_3:12633302-12633321 | None:intergenic | 15.0% |
| !! | TTCATTATGATTTATGAAAT+GGG | + | chr1_3:12633493-12633512 | None:intergenic | 15.0% |
| !! | TTTCATTATGATTTATGAAA+TGG | + | chr1_3:12633494-12633513 | None:intergenic | 15.0% |
| !! | TAATGATATAGAATTATTTG+TGG | - | chr1_3:12633535-12633554 | Msa0104610:intron | 15.0% |
| !!! | ATTATTGCATGAATTTTTTA+AGG | - | chr1_3:12634006-12634025 | Msa0104610:intron | 15.0% |
| !!! | TTATTGCATGAATTTTTTAA+GGG | - | chr1_3:12634007-12634026 | Msa0104610:intron | 15.0% |
| !! | TATTAAAATGAGTATTATGT+TGG | + | chr1_3:12634315-12634334 | None:intergenic | 15.0% |
| !!! | AATTTTAAACCATTGTTATT+TGG | - | chr1_3:12634660-12634679 | Msa0104610:intron | 15.0% |
| !! | AACATTGAAATTCAAATAAA+AGG | - | chr1_3:12634948-12634967 | Msa0104610:intron | 15.0% |
| !!! | GATTTTTTATTTTTTTTTGG+TGG | + | chr1_3:12635430-12635449 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGAATTTGATTCT+AGG | - | chr1_3:12632540-12632559 | Msa0104610:three_prime_UTR | 20.0% |
| !!! | TTTTGTTGAATTTGATTCTA+GGG | - | chr1_3:12632541-12632560 | Msa0104610:three_prime_UTR | 20.0% |
| !!! | GTTTTTGTGATTTGAAATTT+TGG | - | chr1_3:12632607-12632626 | Msa0104610:three_prime_UTR | 20.0% |
| !! | TTATCAACTCAAATTCAAAA+AGG | + | chr1_3:12632899-12632918 | None:intergenic | 20.0% |
| !!! | AGTGGTTATATTTTCTATAT+GGG | + | chr1_3:12633266-12633285 | None:intergenic | 20.0% |
| !!! | AAGTGGTTATATTTTCTATA+TGG | + | chr1_3:12633267-12633286 | None:intergenic | 20.0% |
| !! | TGTTCTTAAACTTCTTATTA+TGG | + | chr1_3:12633338-12633357 | None:intergenic | 20.0% |
| !!! | TTACAAACAATTTAAAGCAA+AGG | + | chr1_3:12633739-12633758 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTAAGTTTTGATT+TGG | - | chr1_3:12633748-12633767 | Msa0104610:intron | 20.0% |
| !! | TAAATTCAGTTCAGATTAAA+TGG | - | chr1_3:12634063-12634082 | Msa0104610:intron | 20.0% |
| !! | ATGAATTGTGATAATCAAAA+TGG | - | chr1_3:12634102-12634121 | Msa0104610:intron | 20.0% |
| !!! | AAGATACAACCAATTAATTT+TGG | - | chr1_3:12634620-12634639 | Msa0104610:intron | 20.0% |
| !!! | AGACCATTATTTTTTAACTT+AGG | - | chr1_3:12634749-12634768 | Msa0104610:intron | 20.0% |
| !! | TCTCCTAAGTTAAAAAATAA+TGG | + | chr1_3:12634755-12634774 | None:intergenic | 20.0% |
| !! | TAATTATACTGAAAATGGTA+AGG | + | chr1_3:12635020-12635039 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTTTTTTGGTGG+TGG | + | chr1_3:12635427-12635446 | None:intergenic | 20.0% |
| !! | CTTCTATTATCAGTATAATT+AGG | + | chr1_3:12635597-12635616 | None:intergenic | 20.0% |
| !!! | TTAATGGGTATAAGAATATT+TGG | + | chr1_3:12635691-12635710 | None:intergenic | 20.0% |
| !!! | GTTTTGTTAGAAGTATTAAT+GGG | + | chr1_3:12635706-12635725 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTAGAAGTATTAA+TGG | + | chr1_3:12635707-12635726 | None:intergenic | 20.0% |
| !!! | AATAACCCTAATTCTTTTAA+CGG | - | chr1_3:12635752-12635771 | Msa0104610:intron | 20.0% |
| !! | GATTTAATGAGTTAATGTAA+AGG | - | chr1_3:12635868-12635887 | Msa0104610:intron | 20.0% |
| !! | TAATGTAAAGGATTCTTATT+TGG | - | chr1_3:12635880-12635899 | Msa0104610:intron | 20.0% |
| !! | ATATTGCATATATACATTGT+CGG | + | chr1_3:12635939-12635958 | None:intergenic | 20.0% |
| !! | TTCAAAAAATAAACAAGATG+TGG | + | chr1_3:12636054-12636073 | None:intergenic | 20.0% |
| !!! | TCTTGTTTATTTTTTGAACA+TGG | - | chr1_3:12636056-12636075 | Msa0104610:intron | 20.0% |
| !! | TAATCATGAACATTCATTTA+GGG | - | chr1_3:12636496-12636515 | Msa0104610:intron | 20.0% |
| !!! | TTTTTTTCTTTATGTGCTTT+TGG | - | chr1_3:12636700-12636719 | Msa0104610:intron | 20.0% |
| !! | TTGTTTATGTGAAGGATTTT+CGG | - | chr1_3:12632391-12632410 | Msa0104610:intron | 25.0% |
| !! | CACTTTATGATTTGAGATTT+AGG | - | chr1_3:12632750-12632769 | Msa0104610:CDS | 25.0% |
| !!! | TTTTTTTTTTGAGGGATGAT+AGG | - | chr1_3:12632815-12632834 | Msa0104610:CDS | 25.0% |
| !!! | TTTTTTTTTTGAGGGATGAT+AGG | - | chr1_3:12632815-12632834 | Msa0104610:CDS | 25.0% |
| ! | TTAATAGGGTTAATTAGCAT+TGG | - | chr1_3:12632928-12632947 | Msa0104610:CDS | 25.0% |
| ! | TAAGGAATAAATAGAGAAAG+TGG | + | chr1_3:12633284-12633303 | None:intergenic | 25.0% |
| ! | CTCGTTAGAAATTACAAAAT+AGG | + | chr1_3:12633563-12633582 | None:intergenic | 25.0% |
| !! | CTATTTTGTAATTTCTAACG+AGG | - | chr1_3:12633561-12633580 | Msa0104610:intron | 25.0% |
| !!! | AGTTTTGATTTGGAATATTC+TGG | - | chr1_3:12633758-12633777 | Msa0104610:intron | 25.0% |
| ! | TATATCATATGTGTTCTACT+AGG | - | chr1_3:12633786-12633805 | Msa0104610:intron | 25.0% |
| ! | CATGCAATAATATTGAAACA+AGG | + | chr1_3:12633997-12634016 | None:intergenic | 25.0% |
| !! | GTTATTTCATATGTTACATG+TGG | - | chr1_3:12634264-12634283 | Msa0104610:intron | 25.0% |
| ! | TTTGCGTTACAATATTAGTT+TGG | + | chr1_3:12634420-12634439 | None:intergenic | 25.0% |
| ! | TATATTTGTAACAAGCTAAG+AGG | + | chr1_3:12634472-12634491 | None:intergenic | 25.0% |
| ! | TCATGCATTCCAAAATTAAT+TGG | + | chr1_3:12634632-12634651 | None:intergenic | 25.0% |
| !!! | TTTAAACCATTGTTATTTGG+TGG | - | chr1_3:12634663-12634682 | Msa0104610:intron | 25.0% |
| ! | TAATTTCCACCAAATAACAA+TGG | + | chr1_3:12634672-12634691 | None:intergenic | 25.0% |
| ! | TGAAATTACAAGTAAACACT+AGG | - | chr1_3:12634847-12634866 | Msa0104610:intron | 25.0% |
| ! | TTCTTACTTCTTTAGATTAG+TGG | + | chr1_3:12634885-12634904 | None:intergenic | 25.0% |
| ! | TGCTCTAATTATACTGAAAA+TGG | + | chr1_3:12635025-12635044 | None:intergenic | 25.0% |
| !! | TTAATCATTAGGGATTTTGT+GGG | + | chr1_3:12635295-12635314 | None:intergenic | 25.0% |
| !! | ATTAATCATTAGGGATTTTG+TGG | + | chr1_3:12635296-12635315 | None:intergenic | 25.0% |
| ! | AATCCCTAATGATTAATATC+TGG | - | chr1_3:12635299-12635318 | Msa0104610:intron | 25.0% |
| ! | ATCCCTAATGATTAATATCT+GGG | - | chr1_3:12635300-12635319 | Msa0104610:intron | 25.0% |
| ! | AACCCAGATATTAATCATTA+GGG | + | chr1_3:12635305-12635324 | None:intergenic | 25.0% |
| ! | AAACCCAGATATTAATCATT+AGG | + | chr1_3:12635306-12635325 | None:intergenic | 25.0% |
| !!! | TCAGTATAATTAGGAGTATT+AGG | + | chr1_3:12635588-12635607 | None:intergenic | 25.0% |
| ! | AATAATATGTCTCATTGATC+TGG | + | chr1_3:12635643-12635662 | None:intergenic | 25.0% |
| !! | GTTCTATTGATTATCTACTA+CGG | + | chr1_3:12635804-12635823 | None:intergenic | 25.0% |
| ! | CAGAAAAAACTAGATGAAAA+AGG | + | chr1_3:12635966-12635985 | None:intergenic | 25.0% |
| !!! | CTTTTTCATCTAGTTTTTTC+TGG | - | chr1_3:12635964-12635983 | Msa0104610:intron | 25.0% |
| !! | AATTTTGTGAAGAAATCTCT+TGG | - | chr1_3:12636389-12636408 | Msa0104610:intron | 25.0% |
| !! | ATTTTGTGAAGAAATCTCTT+GGG | - | chr1_3:12636390-12636409 | Msa0104610:intron | 25.0% |
| ! | CTAATCATGAACATTCATTT+AGG | - | chr1_3:12636495-12636514 | Msa0104610:intron | 25.0% |
| ! | TTGTAATCAAGATGAAACAA+AGG | + | chr1_3:12636727-12636746 | None:intergenic | 25.0% |
| ! | TTGTTTCATCTTGATTACAA+AGG | - | chr1_3:12636727-12636746 | Msa0104610:intron | 25.0% |
| ! | ACAAGAAAAATCAAGGTAAA+AGG | + | chr1_3:12637002-12637021 | None:intergenic | 25.0% |
| ! | AAAACGAACAAGAAAAATCA+AGG | + | chr1_3:12637009-12637028 | None:intergenic | 25.0% |
| ! | CACAAAAAATTCTACTAAGT+GGG | + | chr1_3:12637036-12637055 | None:intergenic | 25.0% |
| ! | TCACAAAAAATTCTACTAAG+TGG | + | chr1_3:12637037-12637056 | None:intergenic | 25.0% |
| !!! | TAGTTGTTAGTTGTTGTTTT+TGG | - | chr1_3:12637118-12637137 | Msa0104610:CDS | 25.0% |
| !! | CATTTGTTGGATTAATAAAG+AGG | + | chr1_3:12637146-12637165 | None:intergenic | 25.0% |
| ! | AAATCCACATATGGATATTA+GGG | + | chr1_3:12637172-12637191 | None:intergenic | 25.0% |
| ! | AAAATCCACATATGGATATT+AGG | + | chr1_3:12637173-12637192 | None:intergenic | 25.0% |
| ! | ATTAACACAAAATCCACATA+TGG | + | chr1_3:12637181-12637200 | None:intergenic | 25.0% |
| !!! | TAACGGTTTTGTTTATGTGA+AGG | - | chr1_3:12632383-12632402 | Msa0104610:intron | 30.0% |
| !! | TTGAATTTGATTCTAGGGTT+TGG | - | chr1_3:12632546-12632565 | Msa0104610:three_prime_UTR | 30.0% |
| ! | TTAGGTTAATTGACTCTTTG+AGG | - | chr1_3:12632768-12632787 | Msa0104610:CDS | 30.0% |
| ! | TCTTTGAGGAAATGAATGAT+AGG | - | chr1_3:12632782-12632801 | Msa0104610:CDS | 30.0% |
| AACAATTGTTTGTGAGAAAC+TGG | - | chr1_3:12633164-12633183 | Msa0104610:CDS | 30.0% | |
| AAGTTTAAGAACATCCACAA+TGG | - | chr1_3:12633345-12633364 | Msa0104610:intron | 30.0% | |
| ! | TATTTAGTGTGGTGCTAAAT+AGG | + | chr1_3:12633388-12633407 | None:intergenic | 30.0% |
| TATTTAGCACCACACTAAAT+AGG | - | chr1_3:12633387-12633406 | Msa0104610:intron | 30.0% | |
| AAATGTTATACTCCACAATG+GGG | + | chr1_3:12633416-12633435 | None:intergenic | 30.0% | |
| CAAATGTTATACTCCACAAT+GGG | + | chr1_3:12633417-12633436 | None:intergenic | 30.0% | |
| CATTGTGGAGTATAACATTT+GGG | - | chr1_3:12633416-12633435 | Msa0104610:intron | 30.0% | |
| ! | TGTTCACATCACTCATTTTA+TGG | + | chr1_3:12633625-12633644 | None:intergenic | 30.0% |
| AAAATGAGTGATGTGAACAT+AGG | - | chr1_3:12633626-12633645 | Msa0104610:intron | 30.0% | |
| CAACAATTTGGTACTATGAT+TGG | + | chr1_3:12634148-12634167 | None:intergenic | 30.0% | |
| ATTGCCTAAAGTTCATTGTT+AGG | + | chr1_3:12634180-12634199 | None:intergenic | 30.0% | |
| CTTTAGGCAATAGAGAAAAT+TGG | - | chr1_3:12634189-12634208 | Msa0104610:intron | 30.0% | |
| GCATATTAAGTAAAAACGTG+AGG | + | chr1_3:12634705-12634724 | None:intergenic | 30.0% | |
| TTGTGTATGCTATACTACAA+GGG | + | chr1_3:12634728-12634747 | None:intergenic | 30.0% | |
| ATTGTGTATGCTATACTACA+AGG | + | chr1_3:12634729-12634748 | None:intergenic | 30.0% | |
| ! | AACAAGTTTTCAAAGCTCTT+GGG | + | chr1_3:12634778-12634797 | None:intergenic | 30.0% |
| !! | AAGAGCTTTGAAAACTTGTT+GGG | - | chr1_3:12634778-12634797 | Msa0104610:intron | 30.0% |
| AAGTAAGAAGTTTATGCCTT+GGG | - | chr1_3:12634896-12634915 | Msa0104610:intron | 30.0% | |
| TACTTTAAGCATTAATCCCA+AGG | + | chr1_3:12634915-12634934 | None:intergenic | 30.0% | |
| CAGTATAATTAGAGCATAGA+TGG | - | chr1_3:12635029-12635048 | Msa0104610:intron | 30.0% | |
| !!! | AGGTATTTGAGTGGTTTTAT+AGG | + | chr1_3:12635271-12635290 | None:intergenic | 30.0% |
| ! | TAATCATTAGGGATTTTGTG+GGG | + | chr1_3:12635294-12635313 | None:intergenic | 30.0% |
| GACAATGCATAATATATGCA+AGG | - | chr1_3:12635382-12635401 | Msa0104610:intron | 30.0% | |
| TCAATAGAACTAATGTTCCA+TGG | - | chr1_3:12635814-12635833 | Msa0104610:intron | 30.0% | |
| AACGGTAAGTTTGTATAACA+GGG | - | chr1_3:12635837-12635856 | Msa0104610:intron | 30.0% | |
| TAAGCATGCAATTAACTGAT+TGG | + | chr1_3:12636006-12636025 | None:intergenic | 30.0% | |
| ! | AAACTCTCATCTGTACATTT+TGG | + | chr1_3:12636311-12636330 | None:intergenic | 30.0% |
| TTGAGACAAAAACATTGATG+AGG | + | chr1_3:12636364-12636383 | None:intergenic | 30.0% | |
| AAGCAAAGCAATCATACTAA+CGG | + | chr1_3:12636459-12636478 | None:intergenic | 30.0% | |
| !!! | TGGTAACTTGGATGTTTTTT+TGG | - | chr1_3:12636595-12636614 | Msa0104610:intron | 30.0% |
| TTTCATCTTGATTACAAAGG+AGG | - | chr1_3:12636730-12636749 | Msa0104610:intron | 30.0% | |
| !! | GTTTGGTGTCATTTGATATA+TGG | - | chr1_3:12636830-12636849 | Msa0104610:CDS | 30.0% |
| TTGCATAATAGTTGATCTGT+AGG | - | chr1_3:12636882-12636901 | Msa0104610:CDS | 30.0% | |
| TGCATATGCTTATACTTAGT+TGG | - | chr1_3:12636931-12636950 | Msa0104610:CDS | 30.0% | |
| TAAACTAAAGCACACAAGAA+AGG | + | chr1_3:12636966-12636985 | None:intergenic | 30.0% | |
| AGAATACATTACTGTTGCAA+TGG | - | chr1_3:12637056-12637075 | Msa0104610:CDS | 30.0% | |
| GATATTAGGGAATCATTTGT+TGG | + | chr1_3:12637159-12637178 | None:intergenic | 30.0% | |
| ! | ATGACAAGGGAAGGAATTTT+TGG | + | chr1_3:12632077-12632096 | None:intergenic | 35.0% |
| TGATGAAGAATGAAGAGTGA+GGG | + | chr1_3:12632108-12632127 | None:intergenic | 35.0% | |
| GAACGCGATTATGAAAAAAG+CGG | + | chr1_3:12632141-12632160 | None:intergenic | 35.0% | |
| AATGAAATGGAACACGCAAA+TGG | - | chr1_3:12632182-12632201 | Msa0104610:three_prime_UTR | 35.0% | |
| GAGAAAATGAGATCGTGAAA+TGG | + | chr1_3:12632274-12632293 | None:intergenic | 35.0% | |
| !! | GGTTTGGTGTATTACGAATT+AGG | - | chr1_3:12632562-12632581 | Msa0104610:three_prime_UTR | 35.0% |
| ATAGGTTACAATTGCGTGTA+GGG | - | chr1_3:12632865-12632884 | Msa0104610:CDS | 35.0% | |
| ! | TAGGGTTAATTAGCATTGGA+TGG | - | chr1_3:12632932-12632951 | Msa0104610:CDS | 35.0% |
| TTTGTTCTTAATCGCGTTTG+TGG | - | chr1_3:12633072-12633091 | Msa0104610:CDS | 35.0% | |
| TTTAAGAACATCCACAATGG+TGG | - | chr1_3:12633348-12633367 | Msa0104610:intron | 35.0% | |
| TTAAGAACATCCACAATGGT+GGG | - | chr1_3:12633349-12633368 | Msa0104610:intron | 35.0% | |
| AATGTTATACTCCACAATGG+GGG | + | chr1_3:12633415-12633434 | None:intergenic | 35.0% | |
| CCAAATGTTATACTCCACAA+TGG | + | chr1_3:12633418-12633437 | None:intergenic | 35.0% | |
| CCATTGTGGAGTATAACATT+TGG | - | chr1_3:12633415-12633434 | Msa0104610:intron | 35.0% | |
| TGTAATTTCTAACGAGGTGT+TGG | - | chr1_3:12633567-12633586 | Msa0104610:intron | 35.0% | |
| ! | GTAATTTCTAACGAGGTGTT+GGG | - | chr1_3:12633568-12633587 | Msa0104610:intron | 35.0% |
| !! | GGTGTTGGGTTGAAAAAAAT+TGG | - | chr1_3:12633582-12633601 | Msa0104610:intron | 35.0% |
| CTCATATTGGGTGCTTAAAT+GGG | + | chr1_3:12633655-12633674 | None:intergenic | 35.0% | |
| ACTCATATTGGGTGCTTAAA+TGG | + | chr1_3:12633656-12633675 | None:intergenic | 35.0% | |
| ! | TACAACAGAGCACTCATATT+GGG | + | chr1_3:12633667-12633686 | None:intergenic | 35.0% |
| !! | TTAGTTGAGTTGGACAATAC+TGG | - | chr1_3:12633814-12633833 | Msa0104610:intron | 35.0% |
| AATCCACATTGTCAATCCTT+GGG | + | chr1_3:12633856-12633875 | None:intergenic | 35.0% | |
| !! | ATGTGGATTGGACAAATGAA+AGG | - | chr1_3:12633867-12633886 | Msa0104610:intron | 35.0% |
| AGGAGTCAGATTCAACAATT+TGG | + | chr1_3:12634160-12634179 | None:intergenic | 35.0% | |
| GACTCCTAACAATGAACTTT+AGG | - | chr1_3:12634173-12634192 | Msa0104610:intron | 35.0% | |
| AGGCAATAGAGAAAATTGGA+AGG | - | chr1_3:12634193-12634212 | Msa0104610:intron | 35.0% | |
| ! | GCGTTACAATATTAGTTTGG+CGG | + | chr1_3:12634417-12634436 | None:intergenic | 35.0% |
| ! | TGTTGAGGCAATTTTCTGTT+GGG | + | chr1_3:12634498-12634517 | None:intergenic | 35.0% |
| ! | ATGTTGAGGCAATTTTCTGT+TGG | + | chr1_3:12634499-12634518 | None:intergenic | 35.0% |
| GAAGCACACATTATATGTTG+AGG | + | chr1_3:12634513-12634532 | None:intergenic | 35.0% | |
| AAACAGTGTATCTTGAAGTC+AGG | - | chr1_3:12634568-12634587 | Msa0104610:intron | 35.0% | |
| TGTGTATGCTATACTACAAG+GGG | + | chr1_3:12634727-12634746 | None:intergenic | 35.0% | |
| ! | CAACAAGTTTTCAAAGCTCT+TGG | + | chr1_3:12634779-12634798 | None:intergenic | 35.0% |
| !! | CAAGAGCTTTGAAAACTTGT+TGG | - | chr1_3:12634777-12634796 | Msa0104610:intron | 35.0% |
| AAGTAAACACTAGGAAGTCA+TGG | - | chr1_3:12634856-12634875 | Msa0104610:intron | 35.0% | |
| GAAGTAAGAAGTTTATGCCT+TGG | - | chr1_3:12634895-12634914 | Msa0104610:intron | 35.0% | |
| TGAAAATGGTAAGGAAGAGT+TGG | + | chr1_3:12635011-12635030 | None:intergenic | 35.0% | |
| ATTAGAGCATAGATGGTCAT+TGG | - | chr1_3:12635036-12635055 | Msa0104610:intron | 35.0% | |
| ! | TGATCTTAGATCAGTTGGTA+GGG | - | chr1_3:12635360-12635379 | Msa0104610:intron | 35.0% |
| CCAGACCGTTAAAAGAATTA+GGG | + | chr1_3:12635760-12635779 | None:intergenic | 35.0% | |
| TCCAGACCGTTAAAAGAATT+AGG | + | chr1_3:12635761-12635780 | None:intergenic | 35.0% | |
| AGAACTAATGTTCCATGGAA+CGG | - | chr1_3:12635819-12635838 | Msa0104610:intron | 35.0% | |
| TATACAAACTTACCGTTCCA+TGG | + | chr1_3:12635834-12635853 | None:intergenic | 35.0% | |
| GAACGGTAAGTTTGTATAAC+AGG | - | chr1_3:12635836-12635855 | Msa0104610:intron | 35.0% | |
| ACGGTAAGTTTGTATAACAG+GGG | - | chr1_3:12635838-12635857 | Msa0104610:intron | 35.0% | |
| !!! | GTTTTTTCTGGAACATGAGA+AGG | - | chr1_3:12635976-12635995 | Msa0104610:intron | 35.0% |
| GATGTGGCAATAAAAAGTCA+TGG | + | chr1_3:12636038-12636057 | None:intergenic | 35.0% | |
| GGTCTACATATCATACAGAA+AGG | + | chr1_3:12636102-12636121 | None:intergenic | 35.0% | |
| CAAAAACTTCAGGTGAAACA+AGG | + | chr1_3:12636283-12636302 | None:intergenic | 35.0% | |
| ! | CTTGTTTCACCTGAAGTTTT+TGG | - | chr1_3:12636281-12636300 | Msa0104610:intron | 35.0% |
| TTTGGTTGTCCAAAAACTTC+AGG | + | chr1_3:12636293-12636312 | None:intergenic | 35.0% | |
| ATTAGATCTCTTCCCTTTCT+CGG | + | chr1_3:12636339-12636358 | None:intergenic | 35.0% | |
| AACATCCAAGTTACCAGAAT+GGG | + | chr1_3:12636591-12636610 | None:intergenic | 35.0% | |
| AAACATCCAAGTTACCAGAA+TGG | + | chr1_3:12636592-12636611 | None:intergenic | 35.0% | |
| !!! | TTGGATGTTTTTTTGGCTAG+AGG | - | chr1_3:12636602-12636621 | Msa0104610:intron | 35.0% |
| !!! | TGTTTTTTTGGCTAGAGGTT+AGG | - | chr1_3:12636607-12636626 | Msa0104610:intron | 35.0% |
| GGATTAAACCTCTATCAATG+TGG | - | chr1_3:12636628-12636647 | Msa0104610:intron | 35.0% | |
| TCATTTCACCACATTGATAG+AGG | + | chr1_3:12636639-12636658 | None:intergenic | 35.0% | |
| GAAGGGAGAATATGCTAAAA+TGG | - | chr1_3:12636771-12636790 | Msa0104610:intron | 35.0% | |
| TTTAGTGAGTTTGCCCAAAA+GGG | - | chr1_3:12636806-12636825 | Msa0104610:intron | 35.0% | |
| CAGATCAACTATTATGCAAC+CGG | + | chr1_3:12636881-12636900 | None:intergenic | 35.0% | |
| GATTCCCTAATATCCATATG+TGG | - | chr1_3:12637165-12637184 | Msa0104610:five_prime_UTR | 35.0% | |
| TCTGGTACCATATGACAAAT+GGG | - | chr1_3:12637232-12637251 | Msa0104610:five_prime_UTR | 35.0% | |
| !!! | CGTTGTGTCGTTTTTTGTAG+AGG | + | chr1_3:12632049-12632068 | None:intergenic | 40.0% |
| GTGATGAAGAATGAAGAGTG+AGG | + | chr1_3:12632109-12632128 | None:intergenic | 40.0% | |
| CGCGTTTCGATGAAATGAAA+TGG | - | chr1_3:12632169-12632188 | Msa0104610:three_prime_UTR | 40.0% | |
| AAGCGATTCTCGAGAAAATC+TGG | - | chr1_3:12632214-12632233 | Msa0104610:three_prime_UTR | 40.0% | |
| AGCGATTCTCGAGAAAATCT+GGG | - | chr1_3:12632215-12632234 | Msa0104610:three_prime_UTR | 40.0% | |
| ! | GGTAATAACGGTAACGGTAA+CGG | - | chr1_3:12632366-12632385 | Msa0104610:intron | 40.0% |
| ! | TTATGTGAAGGATTTTCGGC+CGG | - | chr1_3:12632395-12632414 | Msa0104610:three_prime_UTR | 40.0% |
| TCATCAACATCGTCATTCAC+CGG | + | chr1_3:12632417-12632436 | None:intergenic | 40.0% | |
| AAGACTCTTCGCTTCATGAA+CGG | + | chr1_3:12632442-12632461 | None:intergenic | 40.0% | |
| TCACATGAAAATACTCGAGC+TGG | + | chr1_3:12632500-12632519 | None:intergenic | 40.0% | |
| GATAGGTTACAATTGCGTGT+AGG | - | chr1_3:12632864-12632883 | Msa0104610:CDS | 40.0% | |
| TGTGGAGTATAACATTTGGG+TGG | - | chr1_3:12633419-12633438 | Msa0104610:intron | 40.0% | |
| GTATAACATTTGGGTGGCTA+TGG | - | chr1_3:12633425-12633444 | Msa0104610:intron | 40.0% | |
| ! | CTACAACAGAGCACTCATAT+TGG | + | chr1_3:12633668-12633687 | None:intergenic | 40.0% |
| TATGAGTGCTCTGTTGTAGA+TGG | - | chr1_3:12633669-12633688 | Msa0104610:intron | 40.0% | |
| CTCTGTTGTAGATGGTCTAA+TGG | - | chr1_3:12633677-12633696 | Msa0104610:intron | 40.0% | |
| CACATGAATATATGACCCCA+AGG | - | chr1_3:12633837-12633856 | Msa0104610:intron | 40.0% | |
| ATCCACATTGTCAATCCTTG+GGG | + | chr1_3:12633855-12633874 | None:intergenic | 40.0% | |
| CAATCCACATTGTCAATCCT+TGG | + | chr1_3:12633857-12633876 | None:intergenic | 40.0% | |
| CAAGGATTGACAATGTGGAT+TGG | - | chr1_3:12633855-12633874 | Msa0104610:intron | 40.0% | |
| ACATTTGACCATCAAACAGC+AGG | - | chr1_3:12633952-12633971 | Msa0104610:intron | 40.0% | |
| CATTTGACCATCAAACAGCA+GGG | - | chr1_3:12633953-12633972 | Msa0104610:intron | 40.0% | |
| GTACTATGATTGGCATAGCA+AGG | + | chr1_3:12634138-12634157 | None:intergenic | 40.0% | |
| TTGGAAGGTTGTCTGATAAG+TGG | - | chr1_3:12634208-12634227 | Msa0104610:intron | 40.0% | |
| TGGAAGGTTGTCTGATAAGT+GGG | - | chr1_3:12634209-12634228 | Msa0104610:intron | 40.0% | |
| TGGTTTACGCTACTAGACAT+AGG | + | chr1_3:12634352-12634371 | None:intergenic | 40.0% | |
| TGAACTAAGCTTGGCTTAGT+TGG | + | chr1_3:12634372-12634391 | None:intergenic | 40.0% | |
| ! | GTTGAGGCAATTTTCTGTTG+GGG | + | chr1_3:12634497-12634516 | None:intergenic | 40.0% |
| TGACCAAATGACCAACTCTA+GGG | + | chr1_3:12635074-12635093 | None:intergenic | 40.0% | |
| AAACCTCTGTTGCAAACCAA+AGG | - | chr1_3:12635227-12635246 | Msa0104610:intron | 40.0% | |
| AACCTCTGTTGCAAACCAAA+GGG | - | chr1_3:12635228-12635247 | Msa0104610:intron | 40.0% | |
| ACGAGGACAAACTGAAATTC+AGG | + | chr1_3:12635341-12635360 | None:intergenic | 40.0% | |
| GTGATCTTAGATCAGTTGGT+AGG | - | chr1_3:12635359-12635378 | Msa0104610:intron | 40.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCA+GGG | + | chr1_3:12635421-12635440 | None:intergenic | 40.0% |
| !!! | ATTTTTTTTTGGTGGTGGCC+AGG | + | chr1_3:12635422-12635441 | None:intergenic | 40.0% |
| ATTAGGTACACAGTATACCC+AGG | + | chr1_3:12635571-12635590 | None:intergenic | 40.0% | |
| ! | CCCTAATTCTTTTAACGGTC+TGG | - | chr1_3:12635757-12635776 | Msa0104610:intron | 40.0% |
| ACTTGTTCTTGCAATGAGAC+TGG | - | chr1_3:12636181-12636200 | Msa0104610:intron | 40.0% | |
| !! | AGAGTTTTGTAGCCGAGAAA+GGG | - | chr1_3:12636324-12636343 | Msa0104610:intron | 40.0% |
| TGTGAAGAAATCTCTTGGGT+TGG | - | chr1_3:12636394-12636413 | Msa0104610:intron | 40.0% | |
| !! | ATCTCTTGGGTTGGATCATA+TGG | - | chr1_3:12636403-12636422 | Msa0104610:intron | 40.0% |
| !! | TCTCTTGGGTTGGATCATAT+GGG | - | chr1_3:12636404-12636423 | Msa0104610:intron | 40.0% |
| AATAGTAGGAAATGCTGCTC+TGG | - | chr1_3:12636430-12636449 | Msa0104610:intron | 40.0% | |
| TATGAGAAGAACAGCTCACT+TGG | - | chr1_3:12636547-12636566 | Msa0104610:intron | 40.0% | |
| ATCAATGTGGTGAAATGACG+AGG | - | chr1_3:12636641-12636660 | Msa0104610:intron | 40.0% | |
| TCAATGTGGTGAAATGACGA+GGG | - | chr1_3:12636642-12636661 | Msa0104610:intron | 40.0% | |
| ! | TACAAAGGAGGTCTGAAATC+TGG | - | chr1_3:12636742-12636761 | Msa0104610:intron | 40.0% |
| GGGAGAATATGCTAAAATGG+AGG | - | chr1_3:12636774-12636793 | Msa0104610:intron | 40.0% | |
| CTTTAGTGAGTTTGCCCAAA+AGG | - | chr1_3:12636805-12636824 | Msa0104610:intron | 40.0% | |
| ! | ATGACACCAAACTCCCTTTT+GGG | + | chr1_3:12636822-12636841 | None:intergenic | 40.0% |
| ! | AATGACACCAAACTCCCTTT+TGG | + | chr1_3:12636823-12636842 | None:intergenic | 40.0% |
| TGTACTAGTGAACAACTGTC+TGG | - | chr1_3:12637214-12637233 | Msa0104610:five_prime_UTR | 40.0% | |
| GTCTGGTACCATATGACAAA+TGG | - | chr1_3:12637231-12637250 | Msa0104610:five_prime_UTR | 40.0% | |
| TACCATATGACAAATGGGTG+TGG | - | chr1_3:12637237-12637256 | Msa0104610:five_prime_UTR | 40.0% | |
| ACCATATGACAAATGGGTGT+GGG | - | chr1_3:12637238-12637257 | Msa0104610:five_prime_UTR | 40.0% | |
| ! | GTTTGCTTGATGACAAGGGA+AGG | + | chr1_3:12632086-12632105 | None:intergenic | 45.0% |
| ! | GAGGGTTTGCTTGATGACAA+GGG | + | chr1_3:12632090-12632109 | None:intergenic | 45.0% |
| ! | TGAGGGTTTGCTTGATGACA+AGG | + | chr1_3:12632091-12632110 | None:intergenic | 45.0% |
| GTCTTCAAGATTCTCAAGCG+CGG | + | chr1_3:12632478-12632497 | None:intergenic | 45.0% | |
| AAGAGAGACAGAGAGAGAGA+GGG | + | chr1_3:12633456-12633475 | None:intergenic | 45.0% | |
| !! | CTGTCTCTCTTCACTTTTCG+CGG | - | chr1_3:12633465-12633484 | Msa0104610:intron | 45.0% |
| CTAGGCGAGTTTAGTTGAGT+TGG | - | chr1_3:12633804-12633823 | Msa0104610:intron | 45.0% | |
| ! | ATCATCACCCTGCTGTTTGA+TGG | + | chr1_3:12633963-12633982 | None:intergenic | 45.0% |
| CAGTCGTACTGAACTAAGCT+TGG | + | chr1_3:12634381-12634400 | None:intergenic | 45.0% | |
| GGAAGTGAAGTCATCGTTAC+TGG | - | chr1_3:12634589-12634608 | Msa0104610:intron | 45.0% | |
| TGACTGCAGCTAGATGTGTT+TGG | + | chr1_3:12634818-12634837 | None:intergenic | 45.0% | |
| !! | GATGGTCATTGGCTTATAGC+TGG | - | chr1_3:12635047-12635066 | Msa0104610:intron | 45.0% |
| TTATAGCTGGTCCCTAGAGT+TGG | - | chr1_3:12635060-12635079 | Msa0104610:intron | 45.0% | |
| GTGACCAAATGACCAACTCT+AGG | + | chr1_3:12635075-12635094 | None:intergenic | 45.0% | |
| TTTCTCACTTCGTCCTCGTT+CGG | + | chr1_3:12635098-12635117 | None:intergenic | 45.0% | |
| TTGCAAACCAAAGGGAGTTC+TGG | - | chr1_3:12635236-12635255 | Msa0104610:intron | 45.0% | |
| AATCACACCAGAACTCCCTT+TGG | + | chr1_3:12635246-12635265 | None:intergenic | 45.0% | |
| !! | TTTGTGGGGAGGTATTTGAG+TGG | + | chr1_3:12635280-12635299 | None:intergenic | 45.0% |
| ! | TCATTAGGGATTTTGTGGGG+AGG | + | chr1_3:12635291-12635310 | None:intergenic | 45.0% |
| ! | CCAACTGATCTAAGATCACG+AGG | + | chr1_3:12635358-12635377 | None:intergenic | 45.0% |
| CCTCGTGATCTTAGATCAGT+TGG | - | chr1_3:12635355-12635374 | Msa0104610:intron | 45.0% | |
| !! | TTCCGTGCAGTTGATAATCC+TGG | - | chr1_3:12635550-12635569 | Msa0104610:intron | 45.0% |
| !! | TCCGTGCAGTTGATAATCCT+GGG | - | chr1_3:12635551-12635570 | Msa0104610:intron | 45.0% |
| ACCCAGGATTATCAACTGCA+CGG | + | chr1_3:12635555-12635574 | None:intergenic | 45.0% | |
| TGTTCTTGCAATGAGACTGG+CGG | - | chr1_3:12636184-12636203 | Msa0104610:intron | 45.0% | |
| GCAGATGTACATGATGCTAG+CGG | - | chr1_3:12636257-12636276 | Msa0104610:intron | 45.0% | |
| !! | GAGAGTTTTGTAGCCGAGAA+AGG | - | chr1_3:12636323-12636342 | Msa0104610:intron | 45.0% |
| GATCATATGGGCGGAATAGT+AGG | - | chr1_3:12636416-12636435 | Msa0104610:intron | 45.0% | |
| ! | TCTGAAATCTGGTCTGGTGA+AGG | - | chr1_3:12636753-12636772 | Msa0104610:intron | 45.0% |
| CTGAAATCTGGTCTGGTGAA+GGG | - | chr1_3:12636754-12636773 | Msa0104610:intron | 45.0% | |
| AGTTTGCCCAAAAGGGAGTT+TGG | - | chr1_3:12636813-12636832 | Msa0104610:CDS | 45.0% | |
| ATGCAACCGGTGCAAACTTT+CGG | + | chr1_3:12636868-12636887 | None:intergenic | 45.0% | |
| GATCTGTAGGTTCTGTTTGC+CGG | - | chr1_3:12636895-12636914 | Msa0104610:CDS | 45.0% | |
| ! | TATGCACCAGAAGTGTGAAC+CGG | + | chr1_3:12636917-12636936 | None:intergenic | 45.0% |
| TCCCACACCCATTTGTCATA+TGG | + | chr1_3:12637242-12637261 | None:intergenic | 45.0% | |
| TGACAAATGGGTGTGGGATA+TGG | - | chr1_3:12637244-12637263 | Msa0104610:five_prime_UTR | 45.0% | |
| TGTTGCTAGCGAAACGACAC+CGG | - | chr1_3:12632341-12632360 | Msa0104610:three_prime_UTR | 50.0% | |
| ACGACACCGGAGGGTAATAA+CGG | - | chr1_3:12632354-12632373 | Msa0104610:intron | 50.0% | |
| CCGTTACCGTTATTACCCTC+CGG | + | chr1_3:12632363-12632382 | None:intergenic | 50.0% | |
| CCGGAGGGTAATAACGGTAA+CGG | - | chr1_3:12632360-12632379 | Msa0104610:intron | 50.0% | |
| ACTACTGCGCTATAGCGTTG+TGG | + | chr1_3:12633033-12633052 | None:intergenic | 50.0% | |
| !! | ATGGGGGTGCCTATTTAGTG+TGG | + | chr1_3:12633399-12633418 | None:intergenic | 50.0% |
| CTAAATAGGCACCCCCATTG+TGG | - | chr1_3:12633401-12633420 | Msa0104610:intron | 50.0% | |
| GAAGAGAGACAGAGAGAGAG+AGG | + | chr1_3:12633457-12633476 | None:intergenic | 50.0% | |
| GACCCCAAGGATTGACAATG+TGG | - | chr1_3:12633850-12633869 | Msa0104610:intron | 50.0% | |
| ! | GGTCCCTAGAGTTGGTCATT+TGG | - | chr1_3:12635068-12635087 | Msa0104610:intron | 50.0% |
| TTCTCACTTCGTCCTCGTTC+GGG | + | chr1_3:12635097-12635116 | None:intergenic | 50.0% | |
| !! | CTCCCTTTGGTTTGCAACAG+AGG | + | chr1_3:12635233-12635252 | None:intergenic | 50.0% |
| !!! | CACTGTCGCAGTCACTTTTG+CGG | + | chr1_3:12635462-12635481 | None:intergenic | 50.0% |
| GACAGTGAACAGCGACACAA+TGG | - | chr1_3:12635475-12635494 | Msa0104610:intron | 50.0% | |
| AGTGAACAGCGACACAATGG+AGG | - | chr1_3:12635478-12635497 | Msa0104610:intron | 50.0% | |
| GTGAACAGCGACACAATGGA+GGG | - | chr1_3:12635479-12635498 | Msa0104610:intron | 50.0% | |
| !! | GGAGGGCATTGTATCTGCTA+CGG | - | chr1_3:12635496-12635515 | Msa0104610:intron | 50.0% |
| !! | GAGGGCATTGTATCTGCTAC+GGG | - | chr1_3:12635497-12635516 | Msa0104610:intron | 50.0% |
| AACACGCTGCTGAGTCTGAA+TGG | + | chr1_3:12636123-12636142 | None:intergenic | 50.0% | |
| !! | CTTGGGTTGGATCATATGGG+CGG | - | chr1_3:12636407-12636426 | Msa0104610:intron | 50.0% |
| TGCTTTGCTTCAGTTGCAGC+AGG | - | chr1_3:12636469-12636488 | Msa0104610:intron | 50.0% | |
| CAAGTTACCAGAATGGGCAC+TGG | + | chr1_3:12636585-12636604 | None:intergenic | 50.0% | |
| CAGTGCCCATTCTGGTAACT+TGG | - | chr1_3:12636583-12636602 | Msa0104610:intron | 50.0% | |
| ! | AGGAGGTCTGAAATCTGGTC+TGG | - | chr1_3:12636747-12636766 | Msa0104610:intron | 50.0% |
| TTGCCACCGAAAGTTTGCAC+CGG | - | chr1_3:12636859-12636878 | Msa0104610:CDS | 50.0% | |
| !! | TGTTTGCCGGTTCACACTTC+TGG | - | chr1_3:12636908-12636927 | Msa0104610:CDS | 50.0% |
| AGCACAAGCACCCACCATTG+TGG | + | chr1_3:12633362-12633381 | None:intergenic | 55.0% | |
| GTCATTTGGTCACCCGAACG+AGG | - | chr1_3:12635082-12635101 | Msa0104610:intron | 55.0% | |
| AAGGTCCAGCGTTCAAACCC+TGG | - | chr1_3:12635401-12635420 | Msa0104610:intron | 55.0% | |
| AGATGCTGCGATTGCACGTC+TGG | - | chr1_3:12636148-12636167 | Msa0104610:intron | 55.0% | |
| ATGAGACTGGCGGAACATCG+TGG | - | chr1_3:12636194-12636213 | Msa0104610:intron | 55.0% | |
| TCTTCGTCCAGTGCCCATTC+TGG | - | chr1_3:12636575-12636594 | Msa0104610:intron | 55.0% | |
| CAACCGGTGCAAACTTTCGG+TGG | + | chr1_3:12636865-12636884 | None:intergenic | 55.0% | |
| TGCTAGCGAAACGACACCGG+AGG | - | chr1_3:12632344-12632363 | Msa0104610:three_prime_UTR | 60.0% | |
| GCTAGCGAAACGACACCGGA+GGG | - | chr1_3:12632345-12632364 | Msa0104610:three_prime_UTR | 60.0% | |
| GGTGGCCAGGGTTTGAACGC+TGG | + | chr1_3:12635409-12635428 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12632022 | 12637301 | 12632022 | ID=Msa0104610;Name=Msa0104610 |
| chr1_3 | mRNA | 12632022 | 12637301 | 12632022 | ID=Msa0104610-mRNA-1;Parent=Msa0104610;Name=Msa0104610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=161|1|1|1|0.5|0.33|3|645|280 |
| chr1_3 | exon | 12632022 | 12632365 | 12632022 | ID=Msa0104610-mRNA-1:exon:5013;Parent=Msa0104610-mRNA-1 |
| chr1_3 | exon | 12632394 | 12633204 | 12632394 | ID=Msa0104610-mRNA-1:exon:5012;Parent=Msa0104610-mRNA-1 |
| chr1_3 | exon | 12636808 | 12637301 | 12636808 | ID=Msa0104610-mRNA-1:exon:5011;Parent=Msa0104610-mRNA-1 |
| chr1_3 | five_prime_UTR | 12637141 | 12637301 | 12637141 | ID=Msa0104610-mRNA-1:five_prime_utr;Parent=Msa0104610-mRNA-1 |
| chr1_3 | CDS | 12636808 | 12637140 | 12636808 | ID=Msa0104610-mRNA-1:cds;Parent=Msa0104610-mRNA-1 |
| chr1_3 | CDS | 12632695 | 12633204 | 12632695 | ID=Msa0104610-mRNA-1:cds;Parent=Msa0104610-mRNA-1 |
| chr1_3 | three_prime_UTR | 12632394 | 12632694 | 12632394 | ID=Msa0104610-mRNA-1:three_prime_utr;Parent=Msa0104610-mRNA-1 |
| chr1_3 | three_prime_UTR | 12632022 | 12632365 | 12632022 | ID=Msa0104610-mRNA-1:three_prime_utr;Parent=Msa0104610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
