AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414790 MtrunA17_Chr1g0178601 96.255 267 10 0 1 267 1 267 0.0 535
Msa1414790 MtrunA17_Chr1g0178591 84.586 266 41 0 1 266 1 266 1.39e-170 471
Msa1414790 MtrunA17_Chr1g0178541 84.672 137 21 0 130 266 44 180 5.30e-83 246
Msa1414790 MtrunA17_Chr4g0028741 39.852 271 150 7 2 265 6 270 3.09e-62 197
Msa1414790 MtrunA17_Chr1g0180331 36.122 263 158 4 9 266 19 276 1.60e-59 190
Msa1414790 MtrunA17_Chr1g0180371 41.379 232 127 3 35 263 48 273 2.49e-59 189
Msa1414790 MtrunA17_Chr7g0264911 43.721 215 110 4 55 264 2 210 8.53e-56 178
Msa1414790 MtrunA17_Chr7g0257091 38.060 268 146 5 10 267 8 265 2.15e-55 179
Msa1414790 MtrunA17_Chr4g0028711 38.136 236 140 2 27 262 37 266 1.89e-52 172
Msa1414790 MtrunA17_Chr4g0028721 35.556 225 139 2 17 241 1 219 2.71e-45 152
Msa1414790 MtrunA17_Chr1g0178561 87.302 63 8 0 67 129 1 63 3.34e-35 120
Msa1414790 MtrunA17_Chr4g0028731 36.000 150 95 1 17 166 1 149 2.07e-25 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414790 AT3G52720.3 44.275 262 143 2 6 267 11 269 1.46e-84 254
Msa1414790 AT3G52720.4 44.275 262 143 2 6 267 11 269 1.46e-84 254
Msa1414790 AT3G52720.1 44.275 262 143 2 6 267 11 269 1.46e-84 254
Msa1414790 AT3G52720.2 42.534 221 124 2 6 226 11 228 1.96e-64 201
Msa1414790 AT2G28210.1 39.179 268 148 6 5 263 10 271 2.15e-62 197
Msa1414790 AT1G08080.1 39.662 237 137 2 27 263 41 271 1.92e-60 192
Msa1414790 AT4G20990.1 37.826 230 133 4 35 264 45 264 1.45e-54 177
Msa1414790 AT5G04180.1 38.911 257 142 7 9 258 5 253 1.48e-53 175
Msa1414790 AT1G08065.1 35.849 265 156 4 7 263 10 268 2.35e-53 174
Msa1414790 AT4G21000.1 38.342 193 109 4 34 226 45 227 6.73e-43 147
Msa1414790 AT5G56330.1 32.787 244 115 5 24 263 136 334 1.74e-34 127
Msa1414790 AT5G56330.2 39.053 169 94 4 24 184 136 303 7.17e-31 117
Msa1414790 AT2G28210.2 40.602 133 70 4 5 128 10 142 7.40e-25 97.4

Find 94 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCAATATTATGGTTAATT+TGG 0.121058 tig0024143:-16021 None:intergenic
TGTCTAAGGGTTTCAATTCT+TGG 0.170815 tig0024143:-16491 None:intergenic
TATTGCAGCCCTCTACAATT+TGG 0.195816 tig0024143:+17788 Msa1414790:CDS
AAAGGTGCCAAGGGCAATTT+TGG 0.203315 tig0024143:-18104 None:intergenic
GTGGGAGATATTACTATAAA+TGG 0.228604 tig0024143:+16866 Msa1414790:CDS
AGGATGGTAGTTTCTGTCTA+AGG 0.282486 tig0024143:-16505 None:intergenic
ATTGAGAGTTCTCTATTCTA+AGG 0.294436 tig0024143:+18666 Msa1414790:three_prime_UTR
GTCCAAATTAACCATAATAT+TGG 0.297124 tig0024143:+16019 Msa1414790:five_prime_UTR
TTAACAAGTGTAGCATTTGT+AGG 0.319349 tig0024143:-16525 None:intergenic
GGATGGTGGATGAATTTGTT+GGG 0.326789 tig0024143:-15973 None:intergenic
CCCCACTTCTCAGGACCATT+TGG 0.327367 tig0024143:-16384 None:intergenic
TTAACAACCAATTCAACATT+GGG 0.341353 tig0024143:+16544 Msa1414790:CDS
ATGTAGAGGAAATAAATAAA+AGG 0.341861 tig0024143:+18128 Msa1414790:CDS
TACATACCCCAATGTTGAAT+TGG 0.343928 tig0024143:-16551 None:intergenic
AATTCTTCTTATTGCAACTT+TGG 0.348144 tig0024143:+16175 Msa1414790:CDS
CAACATATCTATAATATCTA+TGG 0.348697 tig0024143:-18153 None:intergenic
GAATCCCATGTCTCTATTTG+TGG 0.358258 tig0024143:-18527 None:intergenic
TGTGTTCTTCTCCAATATTA+TGG 0.361637 tig0024143:-16030 None:intergenic
ATTCATTGAAACAACTTCAT+TGG 0.362363 tig0024143:+16897 Msa1414790:CDS
TAATCATATCACTCAAATTA+TGG 0.363011 tig0024143:+18759 Msa1414790:three_prime_UTR
TAGATAATAGCTATTCAAAA+TGG 0.372426 tig0024143:+16133 Msa1414790:exon
ATTGCAGCCCTCTACAATTT+GGG 0.374926 tig0024143:+17789 Msa1414790:CDS
CATGCAAAGAAGGTGTCATT+TGG 0.384098 tig0024143:+18194 Msa1414790:CDS
TCGTTTGCAGCATGCTCAAA+TGG 0.388881 tig0024143:+16420 Msa1414790:CDS
AACTCTACCTTGGAGATTAG+AGG 0.392300 tig0024143:-17822 None:intergenic
GGCATGCTCCTGCAGAGCAC+CGG 0.395484 tig0024143:+16918 Msa1414790:CDS
CCATGAGCCCGGTGCTCTGC+AGG 0.396230 tig0024143:-16926 None:intergenic
CTCAGGGTTCCCCACTTCTC+AGG 0.400725 tig0024143:-16393 None:intergenic
GTTGCCCACACGGTTCTCAT+TGG 0.406783 tig0024143:-18074 None:intergenic
TTTGAGGATATGCTCAACTT+TGG 0.407354 tig0024143:-15994 None:intergenic
TTTAGTTATATTGGACCAAA+TGG 0.408021 tig0024143:+16369 Msa1414790:CDS
TGGATGGTGGATGAATTTGT+TGG 0.409350 tig0024143:-15974 None:intergenic
AGCACAAAGTCCAGTGGAAC+TGG 0.431911 tig0024143:+16446 Msa1414790:CDS
CCTGCAGAGCACCGGGCTCA+TGG 0.434839 tig0024143:+16926 Msa1414790:CDS
ACCTTGGAGATTAGAGGATC+AGG 0.444518 tig0024143:-17816 None:intergenic
GGTGTCATTTGGAACATCAT+TGG 0.445336 tig0024143:+18205 Msa1414790:CDS
GGATGGTAGTTTCTGTCTAA+GGG 0.452303 tig0024143:-16504 None:intergenic
GTTAACAACCAATTCAACAT+TGG 0.453599 tig0024143:+16543 Msa1414790:CDS
TTTATGATAAAGCTAGGTAC+TGG 0.458535 tig0024143:+18584 Msa1414790:three_prime_UTR
GAAGTGGCCTTGCATTGTGC+TGG 0.462504 tig0024143:-18467 None:intergenic
TATCTTCTGTGAGGTGAACT+AGG 0.462726 tig0024143:-17749 None:intergenic
GCATGCTCCTGCAGAGCACC+GGG 0.482296 tig0024143:+16919 Msa1414790:CDS
GAGCATTTACAGATTCTGTT+GGG 0.485401 tig0024143:-15884 None:intergenic
CAAATGACACCTTCTTTGCA+TGG 0.493029 tig0024143:-18193 None:intergenic
CATAGATATTATAGATATGT+TGG 0.494664 tig0024143:+18154 Msa1414790:CDS
CGTTTGCAGCATGCTCAAAT+GGG 0.497742 tig0024143:+16421 Msa1414790:CDS
ATGCTGCAAACGATGGACTC+AGG 0.504036 tig0024143:-16410 None:intergenic
CGACCATTCAATGGCTGAAG+TGG 0.505749 tig0024143:-18483 None:intergenic
CCTTGGCACCTTTGATGTAG+AGG 0.509605 tig0024143:+18114 Msa1414790:CDS
TATTCTAAGGATGTTCTACT+AGG 0.517315 tig0024143:+18679 Msa1414790:three_prime_UTR
TCATTCATTACCAGTTCCAC+TGG 0.518412 tig0024143:-16456 None:intergenic
ATTTATTTCCTCTACATCAA+AGG 0.518490 tig0024143:-18122 None:intergenic
CAGAATCTGTAAATGCTCCT+TGG 0.519008 tig0024143:+15889 Msa1414790:five_prime_UTR
TGGCATCTTTGTTGCCCACA+CGG 0.524313 tig0024143:-18084 None:intergenic
GGAGCATTTACAGATTCTGT+TGG 0.531273 tig0024143:-15885 None:intergenic
GATGGTGGATGAATTTGTTG+GGG 0.531971 tig0024143:-15972 None:intergenic
AGGCCACTTCAGCCATTGAA+TGG 0.533333 tig0024143:+18480 Msa1414790:CDS
ACTACCCCTCCATGCAAAGA+AGG 0.533789 tig0024143:+18184 Msa1414790:CDS
CAAGTGTAGCATTTGTAGGA+TGG 0.539412 tig0024143:-16521 None:intergenic
AGGATATGCTCAACTTTGGA+TGG 0.539841 tig0024143:-15990 None:intergenic
CTTACAAACGACCATGAGCC+CGG 0.541180 tig0024143:-16937 None:intergenic
ACCAAATGGTCCTGAGAAGT+GGG 0.541655 tig0024143:+16383 Msa1414790:CDS
GACCAAATGGTCCTGAGAAG+TGG 0.543240 tig0024143:+16382 Msa1414790:CDS
TGACACCTTCTTTGCATGGA+GGG 0.546979 tig0024143:-18189 None:intergenic
CTCTACATCAAAGGTGCCAA+GGG 0.556030 tig0024143:-18113 None:intergenic
ATAGGAAAAGTATGCTGCCA+AGG 0.556649 tig0024143:-15906 None:intergenic
TTCCAAATACAGACATGAAG+CGG 0.562427 tig0024143:+17719 Msa1414790:intron
AAAGATGCCAAAATTGCCCT+TGG 0.564204 tig0024143:+18097 Msa1414790:CDS
TTTAGAGGGATACTAACATC+AGG 0.569976 tig0024143:-18616 None:intergenic
TGCTGCAAACGATGGACTCA+GGG 0.573943 tig0024143:-16409 None:intergenic
CCTCTACATCAAAGGTGCCA+AGG 0.575134 tig0024143:-18114 None:intergenic
TTTGAGCATGCTGCAAACGA+TGG 0.579578 tig0024143:-16417 None:intergenic
GACACCTTCTTTGCATGGAG+GGG 0.587126 tig0024143:-18188 None:intergenic
TAGAGTTCCAGCACAATGCA+AGG 0.599993 tig0024143:+18460 Msa1414790:CDS
TTATAGTACATATATAGTGA+TGG 0.601734 tig0024143:-16064 None:intergenic
TCCTGATCCTCTAATCTCCA+AGG 0.601948 tig0024143:+17815 Msa1414790:CDS
TGTTATTGTTATCTTCTGTG+AGG 0.604430 tig0024143:-17758 None:intergenic
AACTACCACAAATAGAGACA+TGG 0.605284 tig0024143:+18522 Msa1414790:exon
CATATATAGTGATGGTTGTG+TGG 0.613750 tig0024143:-16056 None:intergenic
CAGGATCACCCAAATTGTAG+AGG 0.616295 tig0024143:-17797 None:intergenic
CATTTGGAACATCATTGGCA+AGG 0.625922 tig0024143:+18210 Msa1414790:CDS
GGGGTTACTTACAAGATCAG+TGG 0.626201 tig0024143:-15953 None:intergenic
AGGATCACCCAAATTGTAGA+GGG 0.637120 tig0024143:-17796 None:intergenic
ACTACCACAAATAGAGACAT+GGG 0.637186 tig0024143:+18523 Msa1414790:exon
TAACAACCAATTCAACATTG+GGG 0.644450 tig0024143:+16545 Msa1414790:CDS
ATATGCTCAACTTTGGATGG+TGG 0.647963 tig0024143:-15987 None:intergenic
ATGACACCTTCTTTGCATGG+AGG 0.651112 tig0024143:-18190 None:intergenic
ATATATGTACTATAAAGCAA+AGG 0.656040 tig0024143:+16072 Msa1414790:five_prime_UTR
TGGGAAAGCACAAAGTCCAG+TGG 0.663928 tig0024143:+16440 Msa1414790:CDS
CTAGCCAATGAGAACCGTGT+GGG 0.667899 tig0024143:+18070 Msa1414790:CDS
CTTCTGTGAGGTGAACTAGG+TGG 0.676418 tig0024143:-17746 None:intergenic
CCAAATGGTCCTGAGAAGTG+GGG 0.710021 tig0024143:+16384 Msa1414790:CDS
TGCTGGAACTCTACACCCAG+TGG 0.713140 tig0024143:-18450 None:intergenic
GCTAGCCAATGAGAACCGTG+TGG 0.715730 tig0024143:+18069 Msa1414790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATTATTATTATTAGT+CGG + tig0024143:16707-16726 Msa1414790:intron 10.0%
!!! GAATTTTTAAAAAAAAGATA+TGG + tig0024143:17346-17365 Msa1414790:intron 10.0%
!! ACATCTAATTTAATATATAT+TGG + tig0024143:17585-17604 Msa1414790:intron 10.0%
!! TAAATGTAGAATTTATTATT+TGG + tig0024143:17987-18006 Msa1414790:intron 10.0%
!!! ATTTTATTATATATCATATG+AGG - tig0024143:18819-18838 None:intergenic 10.0%
!!! AATAGTATACTATTTTTTTT+TGG - tig0024143:18862-18881 None:intergenic 10.0%
!! ATTTGAAAAGTAAAAATGAT+TGG - tig0024143:16694-16713 None:intergenic 15.0%
!!! AATTCTATAATGTTTTTTAG+TGG - tig0024143:17032-17051 None:intergenic 15.0%
!! AAAAATTTATAAGCATCATT+TGG - tig0024143:17261-17280 None:intergenic 15.0%
!! TTTATTCCTTTACAAAAATT+TGG - tig0024143:17529-17548 None:intergenic 15.0%
!! ATTTAATATATATTGGTACA+AGG + tig0024143:17592-17611 Msa1414790:intron 15.0%
!! TCAAATTTATAAAACCAATT+CGG - tig0024143:18279-18298 None:intergenic 15.0%
!!! TTTGTATTAATTTTTGCTTT+TGG + tig0024143:18353-18372 Msa1414790:intron 15.0%
!! TAAAAACTACATTTAATTCA+TGG - tig0024143:18558-18577 None:intergenic 15.0%
!!! ATACTTTTCCTATATAGAAA+AGG + tig0024143:15916-15935 Msa1414790:five_prime_UTR 20.0%
!! TTATAGTACATATATAGTGA+TGG - tig0024143:16067-16086 None:intergenic 20.0%
!! ATATATGTACTATAAAGCAA+AGG + tig0024143:16072-16091 Msa1414790:five_prime_UTR 20.0%
!! TAGATAATAGCTATTCAAAA+TGG + tig0024143:16133-16152 Msa1414790:exon 20.0%
!!! TCGGTTAATTTTAGTTATAT+TGG + tig0024143:16360-16379 Msa1414790:CDS 20.0%
!!! CTTAAAAAGTGTAAAAATTG+TGG + tig0024143:16596-16615 Msa1414790:intron 20.0%
!!! AAATATTCAATTTGAAGTGT+CGG - tig0024143:16646-16665 None:intergenic 20.0%
!! AAACAAAGTACACAATTATA+AGG + tig0024143:16766-16785 Msa1414790:intron 20.0%
!!! AAAATATAGGTACATTTTGA+AGG + tig0024143:16839-16858 Msa1414790:intron 20.0%
!! TAATTCAACAGAATGTTTAA+AGG + tig0024143:17369-17388 Msa1414790:intron 20.0%
!!! TTAGTTCCAAATTTTTGTAA+AGG + tig0024143:17520-17539 Msa1414790:intron 20.0%
!!! GCTAAATAGATTTTTATTAG+AGG - tig0024143:17656-17675 None:intergenic 20.0%
!!! ACTAACATTGTAATTTGTAA+GGG - tig0024143:17678-17697 None:intergenic 20.0%
!!! AACTAACATTGTAATTTGTA+AGG - tig0024143:17679-17698 None:intergenic 20.0%
!! ATGTAGAGGAAATAAATAAA+AGG + tig0024143:18128-18147 Msa1414790:CDS 20.0%
!! CAACATATCTATAATATCTA+TGG - tig0024143:18156-18175 None:intergenic 20.0%
!! CATAGATATTATAGATATGT+TGG + tig0024143:18154-18173 Msa1414790:CDS 20.0%
!!! AATGTAAAGTAATTTGTGTT+TGG + tig0024143:18318-18337 Msa1414790:intron 20.0%
!!! ATGTAAAGTAATTTGTGTTT+GGG + tig0024143:18319-18338 Msa1414790:intron 20.0%
!!! TAAAAGTTTTAGTTGTTCTT+TGG - tig0024143:18424-18443 None:intergenic 20.0%
!!! AGAACAACTAAAACTTTTAA+AGG + tig0024143:18425-18444 Msa1414790:CDS 20.0%
!!! ACAAATTTTATGATAAAGCT+AGG + tig0024143:18578-18597 Msa1414790:three_prime_UTR 20.0%
!! AAAAAGAAAAAAAAACAGAG+TGG - tig0024143:18729-18748 None:intergenic 20.0%
!! TAATCATATCACTCAAATTA+TGG + tig0024143:18759-18778 Msa1414790:three_prime_UTR 20.0%
!! CAAAAAAAAAATGTAGCATT+TGG + tig0024143:18957-18976 Msa1414790:three_prime_UTR 20.0%
! GTCCAAATTAACCATAATAT+TGG + tig0024143:16019-16038 Msa1414790:five_prime_UTR 25.0%
! CTCCAATATTATGGTTAATT+TGG - tig0024143:16024-16043 None:intergenic 25.0%
! AATTCTTCTTATTGCAACTT+TGG + tig0024143:16175-16194 Msa1414790:CDS 25.0%
!! ATCAACTGCATCTATTATTT+TGG - tig0024143:16279-16298 None:intergenic 25.0%
!!! AGCTTTTTTTATGCTAGATT+CGG + tig0024143:16341-16360 Msa1414790:intron 25.0%
! TTTAGTTATATTGGACCAAA+TGG + tig0024143:16369-16388 Msa1414790:CDS 25.0%
! TTAACAACCAATTCAACATT+GGG + tig0024143:16544-16563 Msa1414790:CDS 25.0%
! AAGTACACAATTATAAGGTA+AGG + tig0024143:16771-16790 Msa1414790:intron 25.0%
!!! GGTTGAGTTTGTTAAAATAT+AGG + tig0024143:16826-16845 Msa1414790:intron 25.0%
! ATTCATTGAAACAACTTCAT+TGG + tig0024143:16897-16916 Msa1414790:CDS 25.0%
!! CTTGATTTTGTGAATGTATT+GGG - tig0024143:16992-17011 None:intergenic 25.0%
! CAATACATTCACAAAATCAA+GGG + tig0024143:16991-17010 Msa1414790:intron 25.0%
! ACTATAATTTAAGTCAGAGA+GGG - tig0024143:17107-17126 None:intergenic 25.0%
! AACTATAATTTAAGTCAGAG+AGG - tig0024143:17108-17127 None:intergenic 25.0%
! TATGACGTAAATAGTTTGAA+AGG - tig0024143:17431-17450 None:intergenic 25.0%
! TAGATGTAGAATATACGATA+TGG - tig0024143:17572-17591 None:intergenic 25.0%
! ATATATATTGGTACAAGGAA+TGG + tig0024143:17597-17616 Msa1414790:intron 25.0%
! TATATATTGGTACAAGGAAT+GGG + tig0024143:17598-17617 Msa1414790:intron 25.0%
! AACGTTCATATTTGATATCA+CGG + tig0024143:17865-17884 Msa1414790:intron 25.0%
! ATTTATTTCCTCTACATCAA+AGG - tig0024143:18125-18144 None:intergenic 25.0%
!!! CGTTATTTTTTCAGTTTAGA+GGG - tig0024143:18633-18652 None:intergenic 25.0%
!!! ACGTTATTTTTTCAGTTTAG+AGG - tig0024143:18634-18653 None:intergenic 25.0%
! CTAAACTGAAAAAATAACGT+AGG + tig0024143:18634-18653 Msa1414790:three_prime_UTR 25.0%
! AATGCTGTCCTTTTCTATAT+AGG - tig0024143:15927-15946 None:intergenic 30.0%
!! TGGTTAATTTGGACATTTTG+AGG - tig0024143:16013-16032 None:intergenic 30.0%
TGTGTTCTTCTCCAATATTA+TGG - tig0024143:16033-16052 None:intergenic 30.0%
TTAACAAGTGTAGCATTTGT+AGG - tig0024143:16528-16547 None:intergenic 30.0%
GTTAACAACCAATTCAACAT+TGG + tig0024143:16543-16562 Msa1414790:CDS 30.0%
TAACAACCAATTCAACATTG+GGG + tig0024143:16545-16564 Msa1414790:CDS 30.0%
GGTAGTATATAGTTATGATG+GGG - tig0024143:16625-16644 None:intergenic 30.0%
CGGTAGTATATAGTTATGAT+GGG - tig0024143:16626-16645 None:intergenic 30.0%
TCGGTAGTATATAGTTATGA+TGG - tig0024143:16627-16646 None:intergenic 30.0%
ATTATAAGGTAAGGTTGTTG+AGG + tig0024143:16780-16799 Msa1414790:intron 30.0%
AATTGTGATGTCAACTGATA+TGG + tig0024143:16805-16824 Msa1414790:intron 30.0%
!! GTACATTTTGAAGGTAAAGT+GGG + tig0024143:16848-16867 Msa1414790:CDS 30.0%
GTGGGAGATATTACTATAAA+TGG + tig0024143:16866-16885 Msa1414790:CDS 30.0%
! CCTTGATTTTGTGAATGTAT+TGG - tig0024143:16993-17012 None:intergenic 30.0%
CCAATACATTCACAAAATCA+AGG + tig0024143:16990-17009 Msa1414790:intron 30.0%
TGAGTTTCACAATAATGAAC+AGG - tig0024143:17161-17180 None:intergenic 30.0%
CAACAGAATGTTTAAAGGAT+AGG + tig0024143:17374-17393 Msa1414790:intron 30.0%
CTAGAATAAATCAGAATGCA+TGG - tig0024143:17627-17646 None:intergenic 30.0%
TGTTATTGTTATCTTCTGTG+AGG - tig0024143:17761-17780 None:intergenic 30.0%
TGACTTAAATAACTCTACCT+TGG - tig0024143:17835-17854 None:intergenic 30.0%
GTATAGCTACTAATTACATG+TGG + tig0024143:18013-18032 Msa1414790:intron 30.0%
!! GAAATTGATTTTGACCGAAT+TGG + tig0024143:18262-18281 Msa1414790:intron 30.0%
TTTATGATAAAGCTAGGTAC+TGG + tig0024143:18584-18603 Msa1414790:three_prime_UTR 30.0%
ATTGAGAGTTCTCTATTCTA+AGG + tig0024143:18666-18685 Msa1414790:three_prime_UTR 30.0%
! TATTCTAAGGATGTTCTACT+AGG + tig0024143:18679-18698 Msa1414790:three_prime_UTR 30.0%
GAGCATTTACAGATTCTGTT+GGG - tig0024143:15887-15906 None:intergenic 35.0%
TTTGAGGATATGCTCAACTT+TGG - tig0024143:15997-16016 None:intergenic 35.0%
CATATATAGTGATGGTTGTG+TGG - tig0024143:16059-16078 None:intergenic 35.0%
TGTCTAAGGGTTTCAATTCT+TGG - tig0024143:16494-16513 None:intergenic 35.0%
TACATACCCCAATGTTGAAT+TGG - tig0024143:16554-16573 None:intergenic 35.0%
! ATTATTATTAGTCGGTGCCT+AGG + tig0024143:16715-16734 Msa1414790:intron 35.0%
!! GGTACATTTTGAAGGTAAAG+TGG + tig0024143:16847-16866 Msa1414790:intron 35.0%
TACATTCACAAAATCAAGGG+CGG + tig0024143:16994-17013 Msa1414790:intron 35.0%
!!! TGTTTTTTAGTGGCCATAAG+AGG - tig0024143:17022-17041 None:intergenic 35.0%
CAGAATGTTTAAAGGATAGG+AGG + tig0024143:17377-17396 Msa1414790:intron 35.0%
!! AGCTTGATAATGACAACTTG+AGG + tig0024143:17452-17471 Msa1414790:intron 35.0%
TTCCAAATACAGACATGAAG+CGG + tig0024143:17719-17738 Msa1414790:intron 35.0%
ATTTACCACGAATCCAAACA+AGG + tig0024143:17930-17949 Msa1414790:intron 35.0%
TGAGTCATGTAATCCTTGTT+TGG - tig0024143:17946-17965 None:intergenic 35.0%
CAAGAGTCAAGACTATAAAG+TGG + tig0024143:17964-17983 Msa1414790:intron 35.0%
!! GGCAAGGTACTAATTTTAGT+TGG + tig0024143:18226-18245 Msa1414790:intron 35.0%
TTCTTACTTAATGAGCATGC+AGG + tig0024143:18386-18405 Msa1414790:intron 35.0%
!!! AAAACTTTTAAAGGCACCAC+TGG + tig0024143:18434-18453 Msa1414790:CDS 35.0%
!!! AAACTTTTAAAGGCACCACT+GGG + tig0024143:18435-18454 Msa1414790:CDS 35.0%
! TCAATTTTGCGACCATTCAA+TGG - tig0024143:18495-18514 None:intergenic 35.0%
AACTACCACAAATAGAGACA+TGG + tig0024143:18522-18541 Msa1414790:exon 35.0%
ACTACCACAAATAGAGACAT+GGG + tig0024143:18523-18542 Msa1414790:exon 35.0%
TTTAGAGGGATACTAACATC+AGG - tig0024143:18619-18638 None:intergenic 35.0%
! TTCTACTAGGACACTTTTCT+AGG + tig0024143:18692-18711 Msa1414790:three_prime_UTR 35.0%
!!! AGGACACTTTTCTAGGATTT+TGG + tig0024143:18699-18718 Msa1414790:three_prime_UTR 35.0%
! GGAGCATTTACAGATTCTGT+TGG - tig0024143:15888-15907 None:intergenic 40.0%
CAGAATCTGTAAATGCTCCT+TGG + tig0024143:15889-15908 Msa1414790:five_prime_UTR 40.0%
! ATAGGAAAAGTATGCTGCCA+AGG - tig0024143:15909-15928 None:intergenic 40.0%
!! GATGGTGGATGAATTTGTTG+GGG - tig0024143:15975-15994 None:intergenic 40.0%
!! GGATGGTGGATGAATTTGTT+GGG - tig0024143:15976-15995 None:intergenic 40.0%
!! TGGATGGTGGATGAATTTGT+TGG - tig0024143:15977-15996 None:intergenic 40.0%
ATATGCTCAACTTTGGATGG+TGG - tig0024143:15990-16009 None:intergenic 40.0%
AGGATATGCTCAACTTTGGA+TGG - tig0024143:15993-16012 None:intergenic 40.0%
TCATTCATTACCAGTTCCAC+TGG - tig0024143:16459-16478 None:intergenic 40.0%
GGATGGTAGTTTCTGTCTAA+GGG - tig0024143:16507-16526 None:intergenic 40.0%
AGGATGGTAGTTTCTGTCTA+AGG - tig0024143:16508-16527 None:intergenic 40.0%
CAAGTGTAGCATTTGTAGGA+TGG - tig0024143:16524-16543 None:intergenic 40.0%
AGAAGAAGAGAGAGGGAAAA+GGG - tig0024143:16964-16983 None:intergenic 40.0%
AAGAAGAAGAGAGAGGGAAA+AGG - tig0024143:16965-16984 None:intergenic 40.0%
TATCTTCTGTGAGGTGAACT+AGG - tig0024143:17752-17771 None:intergenic 40.0%
TATTGCAGCCCTCTACAATT+TGG + tig0024143:17788-17807 Msa1414790:CDS 40.0%
ATTGCAGCCCTCTACAATTT+GGG + tig0024143:17789-17808 Msa1414790:CDS 40.0%
AGGATCACCCAAATTGTAGA+GGG - tig0024143:17799-17818 None:intergenic 40.0%
AACTCTACCTTGGAGATTAG+AGG - tig0024143:17825-17844 None:intergenic 40.0%
CGGTAAATTTGTCGAAGTCA+TGG + tig0024143:17885-17904 Msa1414790:intron 40.0%
! GTAATCCTTGTTTGGATTCG+TGG - tig0024143:17938-17957 None:intergenic 40.0%
AAAGATGCCAAAATTGCCCT+TGG + tig0024143:18097-18116 Msa1414790:CDS 40.0%
CAAATGACACCTTCTTTGCA+TGG - tig0024143:18196-18215 None:intergenic 40.0%
!! CATGCAAAGAAGGTGTCATT+TGG + tig0024143:18194-18213 Msa1414790:CDS 40.0%
!! GGTGTCATTTGGAACATCAT+TGG + tig0024143:18205-18224 Msa1414790:CDS 40.0%
! CATTTGGAACATCATTGGCA+AGG + tig0024143:18210-18229 Msa1414790:CDS 40.0%
ACTTAATGAGCATGCAGGTT+AGG + tig0024143:18391-18410 Msa1414790:intron 40.0%
GAATCCCATGTCTCTATTTG+TGG - tig0024143:18530-18549 None:intergenic 40.0%
GGGGTTACTTACAAGATCAG+TGG - tig0024143:15956-15975 None:intergenic 45.0%
ACCAAATGGTCCTGAGAAGT+GGG + tig0024143:16383-16402 Msa1414790:CDS 45.0%
TTTGAGCATGCTGCAAACGA+TGG - tig0024143:16420-16439 None:intergenic 45.0%
TCGTTTGCAGCATGCTCAAA+TGG + tig0024143:16420-16439 Msa1414790:CDS 45.0%
CGTTTGCAGCATGCTCAAAT+GGG + tig0024143:16421-16440 Msa1414790:CDS 45.0%
! ATTAGTCGGTGCCTAGGTAT+CGG + tig0024143:16721-16740 Msa1414790:intron 45.0%
GGAGAGAAGAAGAAGAGAGA+GGG - tig0024143:16971-16990 None:intergenic 45.0%
AGAGAGGGTTTCATCGATGT+TGG - tig0024143:17092-17111 None:intergenic 45.0%
CTCCGCTTCATGTCTGTATT+TGG - tig0024143:17724-17743 None:intergenic 45.0%
CAGGATCACCCAAATTGTAG+AGG - tig0024143:17800-17819 None:intergenic 45.0%
TCCTGATCCTCTAATCTCCA+AGG + tig0024143:17815-17834 Msa1414790:CDS 45.0%
ACCTTGGAGATTAGAGGATC+AGG - tig0024143:17819-17838 None:intergenic 45.0%
!!! AAAGGTGCCAAGGGCAATTT+TGG - tig0024143:18107-18126 None:intergenic 45.0%
!! CTCTACATCAAAGGTGCCAA+GGG - tig0024143:18116-18135 None:intergenic 45.0%
TGACACCTTCTTTGCATGGA+GGG - tig0024143:18192-18211 None:intergenic 45.0%
ATGACACCTTCTTTGCATGG+AGG - tig0024143:18193-18212 None:intergenic 45.0%
TAGAGTTCCAGCACAATGCA+AGG + tig0024143:18460-18479 Msa1414790:CDS 45.0%
GACCAAATGGTCCTGAGAAG+TGG + tig0024143:16382-16401 Msa1414790:CDS 50.0%
CCAAATGGTCCTGAGAAGTG+GGG + tig0024143:16384-16403 Msa1414790:CDS 50.0%
! TGCTGCAAACGATGGACTCA+GGG - tig0024143:16412-16431 None:intergenic 50.0%
! ATGCTGCAAACGATGGACTC+AGG - tig0024143:16413-16432 None:intergenic 50.0%
! TGGGAAAGCACAAAGTCCAG+TGG + tig0024143:16440-16459 Msa1414790:CDS 50.0%
AGCACAAAGTCCAGTGGAAC+TGG + tig0024143:16446-16465 Msa1414790:CDS 50.0%
TAGACCCAACACCGATACCT+AGG - tig0024143:16735-16754 None:intergenic 50.0%
CTTACAAACGACCATGAGCC+CGG - tig0024143:16940-16959 None:intergenic 50.0%
GGGAGAGAAGAAGAAGAGAG+AGG - tig0024143:16972-16991 None:intergenic 50.0%
CTTCTGTGAGGTGAACTAGG+TGG - tig0024143:17749-17768 None:intergenic 50.0%
CTAGCCAATGAGAACCGTGT+GGG + tig0024143:18070-18089 Msa1414790:CDS 50.0%
TGGCATCTTTGTTGCCCACA+CGG - tig0024143:18087-18106 None:intergenic 50.0%
!! CCTCTACATCAAAGGTGCCA+AGG - tig0024143:18117-18136 None:intergenic 50.0%
CCTTGGCACCTTTGATGTAG+AGG + tig0024143:18114-18133 Msa1414790:CDS 50.0%
ACTACCCCTCCATGCAAAGA+AGG + tig0024143:18184-18203 Msa1414790:CDS 50.0%
GACACCTTCTTTGCATGGAG+GGG - tig0024143:18191-18210 None:intergenic 50.0%
AGGCCACTTCAGCCATTGAA+TGG + tig0024143:18480-18499 Msa1414790:CDS 50.0%
CGACCATTCAATGGCTGAAG+TGG - tig0024143:18486-18505 None:intergenic 50.0%
CCCCACTTCTCAGGACCATT+TGG - tig0024143:16387-16406 None:intergenic 55.0%
!! GGTGCCTAGGTATCGGTGTT+GGG + tig0024143:16728-16747 Msa1414790:intron 55.0%
ATCAAGGGCGGTGCCTCTTA+TGG + tig0024143:17006-17025 Msa1414790:intron 55.0%
GCTAGCCAATGAGAACCGTG+TGG + tig0024143:18069-18088 Msa1414790:CDS 55.0%
GTTGCCCACACGGTTCTCAT+TGG - tig0024143:18077-18096 None:intergenic 55.0%
TGCTGGAACTCTACACCCAG+TGG - tig0024143:18453-18472 None:intergenic 55.0%
! GAAGTGGCCTTGCATTGTGC+TGG - tig0024143:18470-18489 None:intergenic 55.0%
CTCAGGGTTCCCCACTTCTC+AGG - tig0024143:16396-16415 None:intergenic 60.0%
!! CGGTGCCTAGGTATCGGTGT+TGG + tig0024143:16727-16746 Msa1414790:intron 60.0%
GGCATGCTCCTGCAGAGCAC+CGG + tig0024143:16918-16937 Msa1414790:CDS 65.0%
! GCATGCTCCTGCAGAGCACC+GGG + tig0024143:16919-16938 Msa1414790:CDS 65.0%
CCATGAGCCCGGTGCTCTGC+AGG - tig0024143:16929-16948 None:intergenic 70.0%
!! CCTGCAGAGCACCGGGCTCA+TGG + tig0024143:16926-16945 Msa1414790:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024143 gene 15882 18980 15882 ID=Msa1414790;Name=Msa1414790
tig0024143 mRNA 15882 18980 15882 ID=Msa1414790-mRNA-1;Parent=Msa1414790;Name=Msa1414790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=270|1|1|1|1|1|6|444|267
tig0024143 exon 15882 16221 15882 ID=Msa1414790-mRNA-1:exon:22001;Parent=Msa1414790-mRNA-1
tig0024143 exon 16358 16566 16358 ID=Msa1414790-mRNA-1:exon:22002;Parent=Msa1414790-mRNA-1
tig0024143 exon 16848 16954 16848 ID=Msa1414790-mRNA-1:exon:22003;Parent=Msa1414790-mRNA-1
tig0024143 exon 17731 17836 17731 ID=Msa1414790-mRNA-1:exon:22004;Parent=Msa1414790-mRNA-1
tig0024143 exon 18049 18231 18049 ID=Msa1414790-mRNA-1:exon:22005;Parent=Msa1414790-mRNA-1
tig0024143 exon 18408 18980 18408 ID=Msa1414790-mRNA-1:exon:22006;Parent=Msa1414790-mRNA-1
tig0024143 five_prime_UTR 15882 16151 15882 ID=Msa1414790-mRNA-1:five_prime_utr;Parent=Msa1414790-mRNA-1
tig0024143 CDS 16152 16221 16152 ID=Msa1414790-mRNA-1:cds;Parent=Msa1414790-mRNA-1
tig0024143 CDS 16358 16566 16358 ID=Msa1414790-mRNA-1:cds;Parent=Msa1414790-mRNA-1
tig0024143 CDS 16848 16954 16848 ID=Msa1414790-mRNA-1:cds;Parent=Msa1414790-mRNA-1
tig0024143 CDS 17731 17836 17731 ID=Msa1414790-mRNA-1:cds;Parent=Msa1414790-mRNA-1
tig0024143 CDS 18049 18231 18049 ID=Msa1414790-mRNA-1:cds;Parent=Msa1414790-mRNA-1
tig0024143 CDS 18408 18536 18408 ID=Msa1414790-mRNA-1:cds;Parent=Msa1414790-mRNA-1
tig0024143 three_prime_UTR 18537 18980 18537 ID=Msa1414790-mRNA-1:three_prime_utr;Parent=Msa1414790-mRNA-1
Gene Sequence

>Msa1414790

ATGGCTTTGCAGATTTACTTCTCAATTCTTCTTATTGCAACTTTGGCTCTATGCACTTCAGCAAATTATAATTCGGTTAATTTTAGTTATATTGGACCAAATGGTCCTGAGAAGTGGGGAACCCTGAGTCCATCGTTTGCAGCATGCTCAAATGGGAAAGCACAAAGTCCAGTGGAACTGGTAATGAATGATATTGTCATGAACCAAGAATTGAAACCCTTAGACAGAAACTACCATCCTACAAATGCTACACTTGTTAACAACCAATTCAACATTGGGGTACATTTTGAAGGTAAAGTGGGAGATATTACTATAAATGGAATGAATTATTCATTGAAACAACTTCATTGGCATGCTCCTGCAGAGCACCGGGCTCATGGTCGTTTACATGAAGCGGAGCTCCACCTAGTTCACCTCACAGAAGATAACAATAACATAGCAGTTATTGCAGCCCTCTACAATTTGGGTGATCCTGATCCTCTAATCTCCAAGATTGAAGACAAGTTCTATGAGCTAGCCAATGAGAACCGTGTGGGCAACAAAGATGCCAAAATTGCCCTTGGCACCTTTGATGTAGAGGAAATAAATAAAAGGATCCATAGATATTATAGATATGTTGGCTCTCTCACTACCCCTCCATGCAAAGAAGGTGTCATTTGGAACATCATTGGCAAGGTTAGGACACTCTCCAAAGAACAACTAAAACTTTTAAAGGCACCACTGGGTGTAGAGTTCCAGCACAATGCAAGGCCACTTCAGCCATTGAATGGTCGCAAAATTGAGATGTACAACTACCACAAATAG

Protein sequence

>Msa1414790

MALQIYFSILLIATLALCTSANYNSVNFSYIGPNGPEKWGTLSPSFAACSNGKAQSPVELVMNDIVMNQELKPLDRNYHPTNATLVNNQFNIGVHFEGKVGDITINGMNYSLKQLHWHAPAEHRAHGRLHEAELHLVHLTEDNNNIAVIAALYNLGDPDPLISKIEDKFYELANENRVGNKDAKIALGTFDVEEINKRIHRYYRYVGSLTTPPCKEGVIWNIIGKVRTLSKEQLKLLKAPLGVEFQHNARPLQPLNGRKIEMYNYHK*