AlfalfaGEDB | Msa0659590

M. sativa cultivar zhongmu-4 / Msa0659590

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615
PFAM: PF01425.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659590	XP_003630360.1	94.066	573	7	1	1	546	37	609	0.0	1101

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659590	sp\|Q01N44\|FAAH_ORYSI	41.869	578	299	8	1	543	31	606	3.81e-152	452

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0659590	0.829984	3.790324e-55	-8.615850e-47
Msa0000220	Msa0659590	0.825938	3.567590e-54	-8.615850e-47
Msa0000610	Msa0659590	0.844633	6.697922e-59	-8.615850e-47
Msa0002700	Msa0659590	0.801471	8.866768e-49	-8.615850e-47
Msa0003370	Msa0659590	0.823109	1.653328e-53	-8.615850e-47
Msa0005500	Msa0659590	0.804627	1.972985e-49	-8.615850e-47
Msa0005690	Msa0659590	0.811257	7.663917e-51	-8.615850e-47
Msa0007570	Msa0659590	0.818628	1.774918e-52	-8.615850e-47
Msa0008250	Msa0659590	0.831488	1.622203e-55	-8.615850e-47
Msa0011060	Msa0659590	0.803817	2.909144e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659590	MtrunA17_Chr8g0384851	94.066	573	7	1	1	546	37	609	0.0	1101
Msa0659590	MtrunA17_Chr3g0130801	74.781	571	115	3	1	544	102	670	0.0	861
Msa0659590	MtrunA17_Chr2g0279961	39.724	579	315	5	1	546	30	607	3.51e-147	436
Msa0659590	MtrunA17_Chr3g0097801	30.385	441	232	11	145	521	85	514	2.05e-38	148
Msa0659590	MtrunA17_Chr8g0385461	24.694	490	292	15	83	538	147	593	4.09e-27	115
Msa0659590	MtrunA17_Chr1g0191741	40.940	149	87	1	167	314	27	175	4.31e-26	110
Msa0659590	MtrunA17_Chr8g0377681	25.692	506	309	18	80	536	18	505	4.96e-24	105
Msa0659590	MtrunA17_Chr4g0037521	24.793	484	316	11	95	536	29	506	6.97e-24	105
Msa0659590	MtrunA17_Chr4g0050371	39.333	150	90	1	166	314	72	221	1.39e-21	98.6
Msa0659590	MtrunA17_Chr8g0377701	25.049	507	323	17	80	542	21	514	7.75e-21	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659590	AT5G64440.1	42.241	580	299	7	1	546	30	607	1.24e-150	445
Msa0659590	AT3G25660.1	34.848	264	167	3	66	329	11	269	1.04e-32	132
Msa0659590	AT5G07360.1	25.173	433	252	10	140	538	241	635	4.47e-25	110
Msa0659590	AT5G07360.3	25.173	433	252	10	140	538	241	635	4.47e-25	110
Msa0659590	AT1G08980.1	38.926	149	90	1	167	314	28	176	3.43e-22	99.8
Msa0659590	AT5G09420.1	34.975	203	120	4	167	360	71	270	4.99e-22	100
Msa0659590	AT5G07360.2	24.480	433	248	11	140	538	241	628	2.40e-20	95.5
Msa0659590	AT3G17970.2	35.374	147	94	1	169	314	60	206	8.06e-18	87.0
Msa0659590	AT3G17970.1	35.374	147	94	1	169	314	60	206	1.03e-17	87.0
Msa0659590	AT4G34880.2	31.984	247	153	5	95	332	39	279	8.71e-14	74.3

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Find 179 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAGTTGGCAAAGTA+TGG	0.332059	4_3:+69969957	Msa0659590:CDS
AAACCTTCAAAATGATGTAA+GGG	0.547435	4_3:-69967402	None:intergenic
AAACTGGACAGTTGGTATGG+TGG	0.613551	4_3:+69969543	Msa0659590:CDS
AAATAGATTCTTAAATCATT+GGG	0.374755	4_3:+69972103	Msa0659590:exon
AAATTTAGCAGACTTTGGAT+GGG	0.572870	4_3:+69970801	Msa0659590:CDS
AACAACTTCTTCAGACTGAT+GGG	0.528037	4_3:+69966581	Msa0659590:five_prime_UTR
AACTGGACAGTTGGTATGGT+GGG	0.517644	4_3:+69969544	Msa0659590:CDS
AAGAATCCCATTTGAAGTGT+AGG	0.478977	4_3:-69968044	None:intergenic
AAGACTAATATGCATGAACT+TGG	0.543227	4_3:+69968661	Msa0659590:CDS
AAGCAAATGAATCAACTCTT+CGG	0.527469	4_3:+69968099	Msa0659590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGAAGATGGAGAGAAAAA+TGG	-	chr4_3:69966556-69966575	None:intergenic	30.0%
GATAGAATTCAGTACTATCA+GGG	-	chr4_3:69966660-69966679	None:intergenic	30.0%
AGATAGAATTCAGTACTATC+AGG	-	chr4_3:69966661-69966680	None:intergenic	30.0%
GGATTATGAACCTTTAACAT+TGG	-	chr4_3:69966689-69966708	None:intergenic	30.0%
CGAAACTTGTAATTGAAAAC+TGG	-	chr4_3:69966930-69966949	None:intergenic	30.0%
ATTTGCTCAGAATTTGGAAA+AGG	-	chr4_3:69967322-69967341	None:intergenic	30.0%
CAAACCTTCAAAATGATGTA+AGG	-	chr4_3:69967406-69967425	None:intergenic	30.0%
TGAAAAAGAAGTTAAATCCC+TGG	+	chr4_3:69967593-69967612	Msa0659590:CDS	30.0%
GAACAAAGCCTTCATTTAAT+CGG	+	chr4_3:69967694-69967713	Msa0659590:CDS	30.0%
TGAAATAGTAATACCATGTG+TGG	-	chr4_3:69967768-69967787	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	69966270	69972414	69966270	ID=Msa0659590;Name=Msa0659590
chr4_3	mRNA	69966270	69972414	69966270	ID=Msa0659590-mRNA-1;Parent=Msa0659590;Name=Msa0659590-mRNA-1;_AED=0.16;_eAED=0.16;_QI=436\|0.94\|1\|1\|0.94\|0.89\|19\|310\|546
chr4_3	exon	69966270	69966697	69966270	ID=Msa0659590-mRNA-1:exon:20614;Parent=Msa0659590-mRNA-1
chr4_3	exon	69967044	69967153	69967044	ID=Msa0659590-mRNA-1:exon:20615;Parent=Msa0659590-mRNA-1
chr4_3	exon	69967360	69967420	69967360	ID=Msa0659590-mRNA-1:exon:20616;Parent=Msa0659590-mRNA-1
chr4_3	exon	69967586	69967773	69967586	ID=Msa0659590-mRNA-1:exon:20617;Parent=Msa0659590-mRNA-1
chr4_3	exon	69968002	69968131	69968002	ID=Msa0659590-mRNA-1:exon:20618;Parent=Msa0659590-mRNA-1
chr4_3	exon	69968390	69968467	69968390	ID=Msa0659590-mRNA-1:exon:20619;Parent=Msa0659590-mRNA-1
chr4_3	exon	69968569	69968716	69968569	ID=Msa0659590-mRNA-1:exon:20620;Parent=Msa0659590-mRNA-1
chr4_3	exon	69968846	69968958	69968846	ID=Msa0659590-mRNA-1:exon:20621;Parent=Msa0659590-mRNA-1
chr4_3	exon	69969361	69969436	69969361	ID=Msa0659590-mRNA-1:exon:20622;Parent=Msa0659590-mRNA-1
chr4_3	exon	69969531	69969602	69969531	ID=Msa0659590-mRNA-1:exon:20623;Parent=Msa0659590-mRNA-1
chr4_3	exon	69969689	69969740	69969689	ID=Msa0659590-mRNA-1:exon:20624;Parent=Msa0659590-mRNA-1
chr4_3	exon	69969912	69969983	69969912	ID=Msa0659590-mRNA-1:exon:20625;Parent=Msa0659590-mRNA-1
chr4_3	exon	69970614	69970714	69970614	ID=Msa0659590-mRNA-1:exon:20626;Parent=Msa0659590-mRNA-1
chr4_3	exon	69970801	69970893	69970801	ID=Msa0659590-mRNA-1:exon:20627;Parent=Msa0659590-mRNA-1
chr4_3	exon	69971268	69971336	69971268	ID=Msa0659590-mRNA-1:exon:20628;Parent=Msa0659590-mRNA-1
chr4_3	exon	69971430	69971494	69971430	ID=Msa0659590-mRNA-1:exon:20629;Parent=Msa0659590-mRNA-1
chr4_3	exon	69971616	69971677	69971616	ID=Msa0659590-mRNA-1:exon:20630;Parent=Msa0659590-mRNA-1
chr4_3	exon	69971772	69971867	69971772	ID=Msa0659590-mRNA-1:exon:20631;Parent=Msa0659590-mRNA-1
chr4_3	exon	69972042	69972414	69972042	ID=Msa0659590-mRNA-1:exon:20632;Parent=Msa0659590-mRNA-1
chr4_3	five_prime_UTR	69966270	69966697	69966270	ID=Msa0659590-mRNA-1:five_prime_utr;Parent=Msa0659590-mRNA-1
chr4_3	five_prime_UTR	69967044	69967051	69967044	ID=Msa0659590-mRNA-1:five_prime_utr;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69967052	69967153	69967052	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69967360	69967420	69967360	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69967586	69967773	69967586	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69968002	69968131	69968002	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69968390	69968467	69968390	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69968569	69968716	69968569	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69968846	69968958	69968846	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69969361	69969436	69969361	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69969531	69969602	69969531	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69969689	69969740	69969689	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69969912	69969983	69969912	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69970614	69970714	69970614	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69970801	69970893	69970801	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69971268	69971336	69971268	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69971430	69971494	69971430	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69971616	69971677	69971616	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69971772	69971867	69971772	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	CDS	69972042	69972104	69972042	ID=Msa0659590-mRNA-1:cds;Parent=Msa0659590-mRNA-1
chr4_3	three_prime_UTR	69972105	69972414	69972105	ID=Msa0659590-mRNA-1:three_prime_utr;Parent=Msa0659590-mRNA-1

Gene Sequence

>Msa0659590

ATGACTGGAATCTTGGTCAAGATTGTCGCTTGGCTCTTGGAGTGTCGAATAATTGGAGCTTTTCTATTGTATATATTGAAGGGAAATAATCTTATTCATAAGTATATTACAAATGCAGATATAGAAGAGCCACCTCTTTATGTTCCCTTACATCATTTTGAAGACCACAATGAAAAAGAAGTTAAATCCCTGGATTTGGCTTTGACTCCACCAGACAAAGTTCAACTTGCCATAGATTGCTTACCTACAACTTTACAAAGACCAATTAATGGAACAAAGCCTTCATTTAATCGGTGGACCATAATGGACTATTTCAGAGCTTACAGCTCAGGAGATATAACACCACACATGGTTGCAGAAAGATTCATAGCTGCTGTTGATGAATCCTCAAAACCTACACTTCAAATGGGATTCTTCATTAACTACAATGTTGAAGATATACTTAGACAAGCAAATGAATCAACTCTTCGGTATCAGAAAGGAGAACCTATATCTGTGCTGGATGGAGTTCCTGTTGCTATCAAGGATGAAATAGATTGTTTGCCATATCCTACTACAGGTGGTACAAAGTGGCTGCACAAACAAAGGCCTTGTACAGATGATGCTTGTTGCATTAAACGTTTAAGATTATGTGGTGCTGTACTTGTCGGGAAGACTAATATGCATGAACTTGGAGCTGGAACTAGCGGTATAAATCCACATTATGGGGCTACAAGAAATCCACATAATGCCAGTAGGATTGCAGGAGGTTCTTCTAGTGGATCTGCCGCTGTGGTGTCGGCAGGGTTGTGTCCTGTTGCACTTGGTGTTGATGGGGGAGGCTCTGTGAGGATGCCTGCAGCACTTTGTGGTGTAGTTGGTCTGAAACCGACTTTCAGTCGTATACCTCATTCTGGAGTTATTCCTCTAAACTGGACAGTTGGTATGGTGGGAATACTAGCAGGCACTGTTGAGGATTCACTCATCACTTATGCAGCAATCAGCGGCGAAATTCCATCGCGTCAGCCTTCTAGTATACCTGCCAAGATTAATCTTCCACTGCTGCCCTTAACAAAGTCAATATCAAAAATCAAGTTGGCAAAGTATGGCAAGATTGTAGATGTCACTTTACCAGAAATAGAAGTGATGCGCCTAGCACATTATTCAACAATTGGATCAGAGTGTAACACTTCACTTGATTATTTTCAAGATAAAAATTTAGCAGACTTTGGATGGGATGCAAGGGTAGCCCTTAAAATCTATGGTGCATTCAGCAGCATGGAGTATATTAAAGCTCAGAAAATTAGGAATCGCCAATTGCAGTTTCACAAGAAAATATTTTCCGAGGCTGATGTCATTGTGTCACCAACAACAGGTGTGACTGCATACCCAATTCAAGATGATGCACTGAAGACTGGTGAACTTGACTATGTCAATGGAGCTGCACTTATTCGGTATTCCATAGCAGGAAACTTCCTGGGACTTCCTGCTGTCACTGTTCCGGTTGGCTATGATAAATTGGGTTTACCGATTGGTCTTCAGTTTATAGGAAGGCCTTGGGCTGAGGCAACATTGATCCACTTGGCATTTGCAATGCAGACCATATGCTTGTCAGAATACAGAAAGCCAGCAATTTTTTATGATCTGCTCAGAACAAATTAA

Protein sequence

>Msa0659590

MTGILVKIVAWLLECRIIGAFLLYILKGNNLIHKYITNADIEEPPLYVPLHHFEDHNEKEVKSLDLALTPPDKVQLAIDCLPTTLQRPINGTKPSFNRWTIMDYFRAYSSGDITPHMVAERFIAAVDESSKPTLQMGFFINYNVEDILRQANESTLRYQKGEPISVLDGVPVAIKDEIDCLPYPTTGGTKWLHKQRPCTDDACCIKRLRLCGAVLVGKTNMHELGAGTSGINPHYGATRNPHNASRIAGGSSSGSAAVVSAGLCPVALGVDGGGSVRMPAALCGVVGLKPTFSRIPHSGVIPLNWTVGMVGILAGTVEDSLITYAAISGEIPSRQPSSIPAKINLPLLPLTKSISKIKLAKYGKIVDVTLPEIEVMRLAHYSTIGSECNTSLDYFQDKNLADFGWDARVALKIYGAFSSMEYIKAQKIRNRQLQFHKKIFSEADVIVSPTTGVTAYPIQDDALKTGELDYVNGAALIRYSIAGNFLGLPAVTVPVGYDKLGLPIGLQFIGRPWAEATLIHLAFAMQTICLSEYRKPAIFYDLLRTN*