AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981730 MtrunA17_Chr7g0266831 95.912 318 7 1 1 318 19 330 0.0 625
Msa0981730 MtrunA17_Chr7g0266851 76.415 318 74 1 1 318 1 317 0.0 511
Msa0981730 MtrunA17_Chr4g0054411 54.887 266 115 3 53 318 55 315 2.01e-99 302
Msa0981730 MtrunA17_Chr2g0320581 49.186 307 134 5 12 302 7 307 2.74e-92 283
Msa0981730 MtrunA17_Chr2g0315161 45.455 297 147 5 11 304 9 293 1.97e-77 244
Msa0981730 MtrunA17_Chr5g0405091 34.286 245 132 9 49 284 29 253 5.50e-24 102
Msa0981730 MtrunA17_Chr7g0216291 52.381 63 29 1 115 177 1 62 5.38e-16 72.0
Msa0981730 MtrunA17_Chr8g0372201 38.710 93 51 2 171 263 17 103 4.74e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981730 AT2G24280.2 57.249 269 109 2 53 321 46 308 4.04e-108 322
Msa0981730 AT2G24280.1 57.249 269 109 2 53 321 46 308 1.84e-107 322
Msa0981730 AT5G65760.1 51.266 316 144 5 10 318 8 320 6.26e-106 319
Msa0981730 AT5G22860.8 42.623 305 163 4 11 306 3 304 6.86e-74 232
Msa0981730 AT5G22860.2 42.623 305 163 4 11 306 3 304 5.74e-73 232
Msa0981730 AT5G22860.3 42.623 305 163 4 11 306 3 304 5.74e-73 232
Msa0981730 AT5G22860.4 42.623 305 163 4 11 306 3 304 1.38e-72 232
Msa0981730 AT5G22860.1 42.623 305 163 4 11 306 3 304 2.21e-72 232
Msa0981730 AT5G22860.7 42.623 305 163 4 11 306 3 304 3.77e-72 231
Msa0981730 AT5G22860.5 42.623 305 163 4 11 306 3 304 3.77e-72 231
Msa0981730 AT5G22860.6 42.623 305 163 4 11 306 3 304 3.77e-72 231
Msa0981730 AT4G36190.1 34.884 258 126 12 12 256 9 237 2.20e-27 112
Msa0981730 AT4G36195.3 33.333 258 130 12 12 256 9 237 4.42e-24 102
Msa0981730 AT4G36195.1 33.333 258 130 12 12 256 9 237 4.42e-24 102
Msa0981730 AT4G36195.2 33.333 258 130 12 12 256 9 237 4.48e-24 102
Msa0981730 AT2G18080.1 33.043 230 120 9 43 256 27 238 6.23e-22 96.3
Msa0981730 AT3G28680.1 37.273 110 69 0 187 296 16 125 2.23e-20 87.8

Find 87 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCATCAATGATACTTAT+TGG 0.188484 6_4:+21268351 Msa0981730:CDS
AAGGAAATCTTGGTATGATA+TGG 0.230704 6_4:-21268193 None:intergenic
AATCCTCCAATTTGATGATT+TGG 0.239788 6_4:+21269676 Msa0981730:CDS
CAGTGCTGGCTGCTTGGTTC+AGG 0.250869 6_4:+21269606 Msa0981730:intron
AATTGTTACAAAGTGATAAA+AGG 0.254500 6_4:+21270133 Msa0981730:CDS
TTCCTTTCTGATGAAAGTTT+AGG 0.260668 6_4:-21268090 None:intergenic
TTGTTCTGTAAAGACCATTT+TGG 0.261483 6_4:-21268259 None:intergenic
AAGAAAATTGATAGAATAAA+AGG 0.261681 6_4:-21267875 None:intergenic
TCCTTTCTGATGAAAGTTTA+GGG 0.280672 6_4:-21268089 None:intergenic
TAATGAGATAAATAAATAAA+TGG 0.282507 6_4:-21267826 None:intergenic
GTGAAACCAAATCATCAAAT+TGG 0.282781 6_4:-21269682 None:intergenic
AAAGGAAGAAAATACTAAAA+AGG 0.299245 6_4:-21267857 None:intergenic
GCTCCAATCTTTGTCTATAC+TGG 0.308765 6_4:+21268392 Msa0981730:CDS
TCTCATCAATGATACTTATT+GGG 0.310905 6_4:+21268352 Msa0981730:CDS
TCTGGACTAATCACTGAATA+AGG 0.312552 6_4:-21268212 None:intergenic
ACCTAATTTCAATGCCCTTT+TGG 0.323357 6_4:+21268472 Msa0981730:CDS
GAGTCTCCTGTTGTTGTGTT+TGG 0.334751 6_4:+21268941 Msa0981730:CDS
ACCAAAAGGGCATTGAAATT+AGG 0.336847 6_4:-21268473 None:intergenic
ACATCATCGCACAAGACTTC+AGG 0.338451 6_4:+21269720 Msa0981730:CDS
GAAATGCAGCATAGATTCTA+TGG 0.341720 6_4:+21268782 Msa0981730:intron
TCTTAGTTCTGCGCAGGCTT+TGG 0.362504 6_4:+21268868 Msa0981730:CDS
TATGGAAAATCAATTCCATT+TGG 0.368192 6_4:+21268800 Msa0981730:CDS
TTTCCAGTATAGACAAAGAT+TGG 0.369258 6_4:-21268395 None:intergenic
AGATAAAGTATTAATTTAAG+AGG 0.376681 6_4:-21270473 None:intergenic
AAGGTTGGCTTGGCCAGGCT+TGG 0.380999 6_4:+21270362 Msa0981730:CDS
AACTCTGGTTCTGTCCAAAA+TGG 0.383245 6_4:+21268245 Msa0981730:CDS
ATCACTGAATAAGGAAATCT+TGG 0.384231 6_4:-21268203 None:intergenic
TTTGGAAGGTTGGCTTGGCC+AGG 0.388060 6_4:+21270357 Msa0981730:CDS
TCTGCTAGTGACAGAAGAAA+TGG 0.410316 6_4:-21267981 None:intergenic
TGGTAAGGGACTCAGGAAAT+TGG 0.411109 6_4:-21270419 None:intergenic
ACCTTCTTCTTGCCTCCAAA+TGG 0.418708 6_4:-21268815 None:intergenic
AGTATTAATTTAAGAGGGTA+TGG 0.419459 6_4:-21270467 None:intergenic
CCAGAGTTTAGTTGTTGCTC+TGG 0.429402 6_4:-21268230 None:intergenic
GGTGTAAGTAGTAATTATAT+AGG 0.442779 6_4:+21270325 Msa0981730:intron
AAATCATCAAATTGGAGGAT+TGG 0.447064 6_4:-21269674 None:intergenic
CTCAGGAAATTGGTTGGTGT+TGG 0.449100 6_4:-21270409 None:intergenic
TTATATAGGAGTAGATGCTT+TGG 0.450963 6_4:+21270339 Msa0981730:CDS
ACCTTTCTCACTGGATATGC+TGG 0.461939 6_4:-21270439 None:intergenic
TCTCCTGTTGTTGTGTTTGG+AGG 0.462578 6_4:+21268944 Msa0981730:CDS
GATCCTCCAAACACAACAAC+AGG 0.470076 6_4:-21268947 None:intergenic
ATGGTTTGAACCTTTCTCAC+TGG 0.470177 6_4:-21270448 None:intergenic
GATATGCTGGTAAGGGACTC+AGG 0.470517 6_4:-21270426 None:intergenic
AAGTATCCACATGTTGCAAT+TGG 0.472771 6_4:+21269632 Msa0981730:CDS
TCTCACTGGATATGCTGGTA+AGG 0.477430 6_4:-21270434 None:intergenic
ATTGTTACAAAGTGATAAAA+GGG 0.477547 6_4:+21270134 Msa0981730:CDS
AGGAAATCTTGGTATGATAT+GGG 0.479572 6_4:-21268192 None:intergenic
CTTTGTCTATACTGGAAATG+AGG 0.480451 6_4:+21268400 Msa0981730:CDS
ACCCTAAACTTTCATCAGAA+AGG 0.484436 6_4:+21268088 Msa0981730:five_prime_UTR
GGAAAATCAATTCCATTTGG+AGG 0.485037 6_4:+21268803 Msa0981730:CDS
GATAAAGTATTAATTTAAGA+GGG 0.492995 6_4:-21270472 None:intergenic
AAAAGAGTAAAACTTTGTAA+TGG 0.493497 6_4:-21268133 None:intergenic
GTTGTGTTTGGAGGATCCTA+TGG 0.495589 6_4:+21268953 Msa0981730:CDS
GAGTAGATGCTTTGGAAGGT+TGG 0.497704 6_4:+21270347 Msa0981730:CDS
TCCATTTGGAGGCAAGAAGA+AGG 0.501288 6_4:+21268814 Msa0981730:CDS
GATGCTTTGGAAGGTTGGCT+TGG 0.508325 6_4:+21270352 Msa0981730:CDS
GAAATTTCTGATAACTCTGA+GGG 0.516593 6_4:-21268319 None:intergenic
CATCATCGCACAAGACTTCA+GGG 0.517088 6_4:+21269721 Msa0981730:CDS
TTTGTCTATACTGGAAATGA+GGG 0.520268 6_4:+21268401 Msa0981730:CDS
ATGGAGGACTAGAATTACTA+AGG 0.522910 6_4:+21270191 Msa0981730:CDS
ATAGATTATACTTCCTCCAT+AGG 0.525664 6_4:-21268969 None:intergenic
ACCAGCATATCCAGTGAGAA+AGG 0.530550 6_4:+21270438 Msa0981730:CDS
AAACCAAATCATCAAATTGG+AGG 0.542286 6_4:-21269679 None:intergenic
CTGCTAGTGACAGAAGAAAT+GGG 0.544166 6_4:-21267980 None:intergenic
TGGATATCTTAGTTCTGCGC+AGG 0.548174 6_4:+21268862 Msa0981730:CDS
ATGATGTTGTCGAAGGCATA+TGG 0.554309 6_4:-21269704 None:intergenic
TGGCTGTATAAATCCAAGCC+TGG 0.559236 6_4:-21270375 None:intergenic
GTTATCAGAAATTTCAACAA+AGG 0.559968 6_4:+21268327 Msa0981730:CDS
CTTGAGGTCAATGATAAGAG+TGG 0.564228 6_4:-21268900 None:intergenic
CTCACTGGATATGCTGGTAA+GGG 0.566602 6_4:-21270433 None:intergenic
ACAAAGTGATAAAAGGGTCA+TGG 0.573085 6_4:+21270140 Msa0981730:CDS
TGAAATTTCTGATAACTCTG+AGG 0.578502 6_4:-21268320 None:intergenic
CTCATCAATGATACTTATTG+GGG 0.580416 6_4:+21268353 Msa0981730:CDS
TATGCAAATAGCAGTACACT+TGG 0.581795 6_4:+21268842 Msa0981730:CDS
TATGATATGGGAAGAAGAGA+AGG 0.582255 6_4:-21268180 None:intergenic
ATAGGAGTAGATGCTTTGGA+AGG 0.585541 6_4:+21270343 Msa0981730:CDS
CCAGAGCAACAACTAAACTC+TGG 0.600523 6_4:+21268230 Msa0981730:CDS
CACTAGCAGACCCAACCACT+AGG 0.602648 6_4:+21267994 Msa0981730:five_prime_UTR
ATCAATGATACTTATTGGGG+CGG 0.603361 6_4:+21268356 Msa0981730:CDS
TGGTGTTGGATAATCTGTCA+TGG 0.604159 6_4:-21270395 None:intergenic
AAAGCTCCAATTGCAACATG+TGG 0.604536 6_4:-21269638 None:intergenic
TGACAGAAGAAATGGGATTG+TGG 0.615253 6_4:-21267973 None:intergenic
AAGGGACTCAGGAAATTGGT+TGG 0.616341 6_4:-21270415 None:intergenic
GAAATGAGGGGAACATAGAG+TGG 0.635112 6_4:+21268414 Msa0981730:CDS
GAGTGGTTTACACAAAACAC+AGG 0.637316 6_4:+21268431 Msa0981730:CDS
TTGTGCGATGATGTTGTCGA+AGG 0.661986 6_4:-21269711 None:intergenic
GTGTTTGGAGGATCCTATGG+AGG 0.677662 6_4:+21268956 Msa0981730:CDS
TTGTCTATACTGGAAATGAG+GGG 0.711014 6_4:+21268402 Msa0981730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAGATAAATAAATAAA+TGG - chr6_4:21267829-21267848 None:intergenic 10.0%
!! ATATAAGAAAAATTAAAGAA+TGG + chr6_4:21267949-21267968 Msa0981730:five_prime_UTR 10.0%
!! TGAATTATATATTATATGTA+TGG + chr6_4:21268726-21268745 Msa0981730:intron 10.0%
!!! AAAATGAAATAAAATTTTGA+TGG - chr6_4:21268996-21269015 None:intergenic 10.0%
!!! AATCAAGATTTTTTAAATTA+TGG + chr6_4:21269052-21269071 Msa0981730:intron 10.0%
!!! TCTTAATTCTAAAAAATTAA+AGG + chr6_4:21269808-21269827 Msa0981730:intron 10.0%
!! AAGAAAATTGATAGAATAAA+AGG - chr6_4:21267878-21267897 None:intergenic 15.0%
!!! TTATTTTCTTAAAAATACCA+AGG - chr6_4:21269096-21269115 None:intergenic 15.0%
!! AAAGGAAGAAAATACTAAAA+AGG - chr6_4:21267860-21267879 None:intergenic 20.0%
!! AAAAGAGTAAAACTTTGTAA+TGG - chr6_4:21268136-21268155 None:intergenic 20.0%
!!! GTTAAAACGCAATTTTTTAA+AGG - chr6_4:21269277-21269296 None:intergenic 20.0%
!!! TAAAAAATTGCGTTTTAACA+TGG + chr6_4:21269278-21269297 Msa0981730:intron 20.0%
!!! TATAAAAATGGTTTTCAGTT+AGG - chr6_4:21269761-21269780 None:intergenic 20.0%
!! AAAAAATATAGCTATTTGTC+AGG - chr6_4:21270067-21270086 None:intergenic 20.0%
!! AATTGTTACAAAGTGATAAA+AGG + chr6_4:21270133-21270152 Msa0981730:CDS 20.0%
!! ATTGTTACAAAGTGATAAAA+GGG + chr6_4:21270134-21270153 Msa0981730:CDS 20.0%
! TTTCATCAGAAAGGAAAAAA+TGG + chr6_4:21268097-21268116 Msa0981730:exon 25.0%
! GTTATCAGAAATTTCAACAA+AGG + chr6_4:21268327-21268346 Msa0981730:CDS 25.0%
! ATCTCATCAATGATACTTAT+TGG + chr6_4:21268351-21268370 Msa0981730:CDS 25.0%
! TCTCATCAATGATACTTATT+GGG + chr6_4:21268352-21268371 Msa0981730:CDS 25.0%
! TACCTCAATAAAAACCAAAA+GGG - chr6_4:21268489-21268508 None:intergenic 25.0%
! TTACCTCAATAAAAACCAAA+AGG - chr6_4:21268490-21268509 None:intergenic 25.0%
! TGAGGTAAACTTTATTATCT+TGG + chr6_4:21268502-21268521 Msa0981730:intron 25.0%
! TGTCAAATCGCATTTATTTA+AGG - chr6_4:21268619-21268638 None:intergenic 25.0%
! TATGGAAAATCAATTCCATT+TGG + chr6_4:21268800-21268819 Msa0981730:CDS 25.0%
!!! GTAATCTAGCTTTAAATGAT+TGG - chr6_4:21269161-21269180 None:intergenic 25.0%
!!! ATGCATTCATTTTTTAGTGT+TGG + chr6_4:21269217-21269236 Msa0981730:intron 25.0%
! TTTACCCATAACAAAAAGTT+AGG - chr6_4:21269245-21269264 None:intergenic 25.0%
! ATCGTATTACAATTGTGTTA+AGG + chr6_4:21269428-21269447 Msa0981730:intron 25.0%
! TTTATTCCTTAACAAATGTC+TGG + chr6_4:21269522-21269541 Msa0981730:intron 25.0%
! ACAAATTTCACTTTAGACTA+TGG - chr6_4:21269581-21269600 None:intergenic 25.0%
! AATTTAACAACCAAATCATC+AGG + chr6_4:21270266-21270285 Msa0981730:intron 25.0%
! GGTGTAAGTAGTAATTATAT+AGG + chr6_4:21270325-21270344 Msa0981730:intron 25.0%
TCCTTTCTGATGAAAGTTTA+GGG - chr6_4:21268092-21268111 None:intergenic 30.0%
TTCCTTTCTGATGAAAGTTT+AGG - chr6_4:21268093-21268112 None:intergenic 30.0%
AGGAAATCTTGGTATGATAT+GGG - chr6_4:21268195-21268214 None:intergenic 30.0%
AAGGAAATCTTGGTATGATA+TGG - chr6_4:21268196-21268215 None:intergenic 30.0%
ATCACTGAATAAGGAAATCT+TGG - chr6_4:21268206-21268225 None:intergenic 30.0%
! TTGTTCTGTAAAGACCATTT+TGG - chr6_4:21268262-21268281 None:intergenic 30.0%
GAAATTTCTGATAACTCTGA+GGG - chr6_4:21268322-21268341 None:intergenic 30.0%
TGAAATTTCTGATAACTCTG+AGG - chr6_4:21268323-21268342 None:intergenic 30.0%
CTCATCAATGATACTTATTG+GGG + chr6_4:21268353-21268372 Msa0981730:CDS 30.0%
! AAAGATTGGAGCTTTCTTTT+TGG - chr6_4:21268384-21268403 None:intergenic 30.0%
TTTCCAGTATAGACAAAGAT+TGG - chr6_4:21268398-21268417 None:intergenic 30.0%
TTTGTCTATACTGGAAATGA+GGG + chr6_4:21268401-21268420 Msa0981730:CDS 30.0%
! TTGCTGACAAATTTTTCTTG+AGG - chr6_4:21268919-21268938 None:intergenic 30.0%
ATAGATTATACTTCCTCCAT+AGG - chr6_4:21268972-21268991 None:intergenic 30.0%
! TGGTACCTAACTTTTTGTTA+TGG + chr6_4:21269237-21269256 Msa0981730:intron 30.0%
!! GGTACCTAACTTTTTGTTAT+GGG + chr6_4:21269238-21269257 Msa0981730:intron 30.0%
ATATTCTTGATGAGACATCA+AGG - chr6_4:21269382-21269401 None:intergenic 30.0%
TTGATGTCTCATCAAGAATA+TGG + chr6_4:21269381-21269400 Msa0981730:intron 30.0%
! CAATATCCAGACATTTGTTA+AGG - chr6_4:21269531-21269550 None:intergenic 30.0%
CTTAACAAATGTCTGGATAT+TGG + chr6_4:21269529-21269548 Msa0981730:intron 30.0%
!!! AGCATTTTTTCTCCCTAATT+TGG + chr6_4:21269554-21269573 Msa0981730:intron 30.0%
TTAGACTATGGTCCAAATTA+GGG - chr6_4:21269569-21269588 None:intergenic 30.0%
TTTAGACTATGGTCCAAATT+AGG - chr6_4:21269570-21269589 None:intergenic 30.0%
AAATCATCAAATTGGAGGAT+TGG - chr6_4:21269677-21269696 None:intergenic 30.0%
! AATCCTCCAATTTGATGATT+TGG + chr6_4:21269676-21269695 Msa0981730:CDS 30.0%
AAACCAAATCATCAAATTGG+AGG - chr6_4:21269682-21269701 None:intergenic 30.0%
GTGAAACCAAATCATCAAAT+TGG - chr6_4:21269685-21269704 None:intergenic 30.0%
ATGAGAAAGTAGTGTTAAAG+AGG + chr6_4:21269860-21269879 Msa0981730:intron 30.0%
TTATATAGGAGTAGATGCTT+TGG + chr6_4:21270339-21270358 Msa0981730:CDS 30.0%
!!! GTGAGAATTTTGAGATCAGT+AGG - chr6_4:21267903-21267922 None:intergenic 35.0%
ACCCTAAACTTTCATCAGAA+AGG + chr6_4:21268088-21268107 Msa0981730:five_prime_UTR 35.0%
TATGATATGGGAAGAAGAGA+AGG - chr6_4:21268183-21268202 None:intergenic 35.0%
TCTGGACTAATCACTGAATA+AGG - chr6_4:21268215-21268234 None:intergenic 35.0%
ATCAATGATACTTATTGGGG+CGG + chr6_4:21268356-21268375 Msa0981730:CDS 35.0%
CTTTGTCTATACTGGAAATG+AGG + chr6_4:21268400-21268419 Msa0981730:CDS 35.0%
TTGTCTATACTGGAAATGAG+GGG + chr6_4:21268402-21268421 Msa0981730:CDS 35.0%
! ACCTAATTTCAATGCCCTTT+TGG + chr6_4:21268472-21268491 Msa0981730:CDS 35.0%
!! ACCAAAAGGGCATTGAAATT+AGG - chr6_4:21268476-21268495 None:intergenic 35.0%
!!! TGCCCTTTTGGTTTTTATTG+AGG + chr6_4:21268484-21268503 Msa0981730:CDS 35.0%
GAAATGCAGCATAGATTCTA+TGG + chr6_4:21268782-21268801 Msa0981730:intron 35.0%
GGAAAATCAATTCCATTTGG+AGG + chr6_4:21268803-21268822 Msa0981730:CDS 35.0%
TATGCAAATAGCAGTACACT+TGG + chr6_4:21268842-21268861 Msa0981730:CDS 35.0%
CCACAATGCAATTGCAATTA+AGG - chr6_4:21269313-21269332 None:intergenic 35.0%
CCTTAATTGCAATTGCATTG+TGG + chr6_4:21269310-21269329 Msa0981730:intron 35.0%
!!! GAAATTTGTTTTTGCAGTGC+TGG + chr6_4:21269592-21269611 Msa0981730:intron 35.0%
AAGTATCCACATGTTGCAAT+TGG + chr6_4:21269632-21269651 Msa0981730:CDS 35.0%
ACAAAGTGATAAAAGGGTCA+TGG + chr6_4:21270140-21270159 Msa0981730:CDS 35.0%
!!! TTCTAGTCCTCCATGTTTTT+TGG - chr6_4:21270185-21270204 None:intergenic 35.0%
ATGGAGGACTAGAATTACTA+AGG + chr6_4:21270191-21270210 Msa0981730:CDS 35.0%
! GTTGTTGTTACCTGATGATT+TGG - chr6_4:21270279-21270298 None:intergenic 35.0%
TGACAGAAGAAATGGGATTG+TGG - chr6_4:21267976-21267995 None:intergenic 40.0%
CTGCTAGTGACAGAAGAAAT+GGG - chr6_4:21267983-21268002 None:intergenic 40.0%
TCTGCTAGTGACAGAAGAAA+TGG - chr6_4:21267984-21268003 None:intergenic 40.0%
!! AACTCTGGTTCTGTCCAAAA+TGG + chr6_4:21268245-21268264 Msa0981730:CDS 40.0%
GCTCCAATCTTTGTCTATAC+TGG + chr6_4:21268392-21268411 Msa0981730:CDS 40.0%
GAGTGGTTTACACAAAACAC+AGG + chr6_4:21268431-21268450 Msa0981730:CDS 40.0%
ACAAAAAGACAATGCAGCTG+AGG - chr6_4:21268536-21268555 None:intergenic 40.0%
CTTGAGGTCAATGATAAGAG+TGG - chr6_4:21268903-21268922 None:intergenic 40.0%
AAAGCTCCAATTGCAACATG+TGG - chr6_4:21269641-21269660 None:intergenic 40.0%
! ATGATGTTGTCGAAGGCATA+TGG - chr6_4:21269707-21269726 None:intergenic 40.0%
GAAGAAACCGCCAAAAAACA+TGG + chr6_4:21270172-21270191 Msa0981730:CDS 40.0%
!!! TAGTCCTCCATGTTTTTTGG+CGG - chr6_4:21270182-21270201 None:intergenic 40.0%
! ATAGGAGTAGATGCTTTGGA+AGG + chr6_4:21270343-21270362 Msa0981730:CDS 40.0%
! TGGTGTTGGATAATCTGTCA+TGG - chr6_4:21270398-21270417 None:intergenic 40.0%
ATGGTTTGAACCTTTCTCAC+TGG - chr6_4:21270451-21270470 None:intergenic 40.0%
GCAGAAAAAGCCTAGTGGTT+GGG - chr6_4:21268007-21268026 None:intergenic 45.0%
!! CAACCACTAGGCTTTTTCTG+CGG + chr6_4:21268006-21268025 Msa0981730:five_prime_UTR 45.0%
CCAGAGTTTAGTTGTTGCTC+TGG - chr6_4:21268233-21268252 None:intergenic 45.0%
CCAGAGCAACAACTAAACTC+TGG + chr6_4:21268230-21268249 Msa0981730:CDS 45.0%
GAAATGAGGGGAACATAGAG+TGG + chr6_4:21268414-21268433 Msa0981730:CDS 45.0%
AAGACAATGCAGCTGAGGTA+GGG - chr6_4:21268531-21268550 None:intergenic 45.0%
AAAGACAATGCAGCTGAGGT+AGG - chr6_4:21268532-21268551 None:intergenic 45.0%
TCCATTTGGAGGCAAGAAGA+AGG + chr6_4:21268814-21268833 Msa0981730:CDS 45.0%
ACCTTCTTCTTGCCTCCAAA+TGG - chr6_4:21268818-21268837 None:intergenic 45.0%
!! TGGATATCTTAGTTCTGCGC+AGG + chr6_4:21268862-21268881 Msa0981730:CDS 45.0%
GAGTCTCCTGTTGTTGTGTT+TGG + chr6_4:21268941-21268960 Msa0981730:CDS 45.0%
TCTCCTGTTGTTGTGTTTGG+AGG + chr6_4:21268944-21268963 Msa0981730:CDS 45.0%
GATCCTCCAAACACAACAAC+AGG - chr6_4:21268950-21268969 None:intergenic 45.0%
GTTGTGTTTGGAGGATCCTA+TGG + chr6_4:21268953-21268972 Msa0981730:CDS 45.0%
AACAGTAGCAATGCGATCCT+TGG + chr6_4:21269076-21269095 Msa0981730:intron 45.0%
TTGTGCGATGATGTTGTCGA+AGG - chr6_4:21269714-21269733 None:intergenic 45.0%
ACATCATCGCACAAGACTTC+AGG + chr6_4:21269720-21269739 Msa0981730:CDS 45.0%
CATCATCGCACAAGACTTCA+GGG + chr6_4:21269721-21269740 Msa0981730:CDS 45.0%
GAAACCGCCAAAAAACATGG+AGG + chr6_4:21270175-21270194 Msa0981730:CDS 45.0%
!! GAGTAGATGCTTTGGAAGGT+TGG + chr6_4:21270347-21270366 Msa0981730:CDS 45.0%
TGGCTGTATAAATCCAAGCC+TGG - chr6_4:21270378-21270397 None:intergenic 45.0%
! CTCAGGAAATTGGTTGGTGT+TGG - chr6_4:21270412-21270431 None:intergenic 45.0%
AAGGGACTCAGGAAATTGGT+TGG - chr6_4:21270418-21270437 None:intergenic 45.0%
TGGTAAGGGACTCAGGAAAT+TGG - chr6_4:21270422-21270441 None:intergenic 45.0%
CTCACTGGATATGCTGGTAA+GGG - chr6_4:21270436-21270455 None:intergenic 45.0%
TCTCACTGGATATGCTGGTA+AGG - chr6_4:21270437-21270456 None:intergenic 45.0%
ACCAGCATATCCAGTGAGAA+AGG + chr6_4:21270438-21270457 Msa0981730:CDS 45.0%
ACCTTTCTCACTGGATATGC+TGG - chr6_4:21270442-21270461 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTACAA+AGG - chr6_4:21269356-21269375 None:intergenic 5.0%
!! TGTAAATTAAAATATAAAAA+TGG - chr6_4:21269773-21269792 None:intergenic 5.0%
!!! TATTTAATTTATTATTGTTT+TGG + chr6_4:21270304-21270323 Msa0981730:intron 5.0%
CGCAGAAAAAGCCTAGTGGT+TGG - chr6_4:21268008-21268027 None:intergenic 50.0%
GTTCCGCAGAAAAAGCCTAG+TGG - chr6_4:21268012-21268031 None:intergenic 50.0%
!! TCTTAGTTCTGCGCAGGCTT+TGG + chr6_4:21268868-21268887 Msa0981730:CDS 50.0%
GTGTTTGGAGGATCCTATGG+AGG + chr6_4:21268956-21268975 Msa0981730:CDS 50.0%
!!! TTTTTGCAGTGCTGGCTGCT+TGG + chr6_4:21269600-21269619 Msa0981730:intron 50.0%
!! GATGCTTTGGAAGGTTGGCT+TGG + chr6_4:21270352-21270371 Msa0981730:CDS 50.0%
GATATGCTGGTAAGGGACTC+AGG - chr6_4:21270429-21270448 None:intergenic 50.0%
CACTAGCAGACCCAACCACT+AGG + chr6_4:21267994-21268013 Msa0981730:five_prime_UTR 55.0%
!! TTTGGAAGGTTGGCTTGGCC+AGG + chr6_4:21270357-21270376 Msa0981730:CDS 55.0%
!! CAGTGCTGGCTGCTTGGTTC+AGG + chr6_4:21269606-21269625 Msa0981730:intron 60.0%
!! AAGGTTGGCTTGGCCAGGCT+TGG + chr6_4:21270362-21270381 Msa0981730:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21267797 21270480 21267797 ID=Msa0981730;Name=Msa0981730
chr6_4 mRNA 21267797 21270480 21267797 ID=Msa0981730-mRNA-1;Parent=Msa0981730;Name=Msa0981730-mRNA-1;_AED=0.28;_eAED=0.28;_QI=319|0.75|0.6|1|1|1|5|0|323
chr6_4 exon 21267797 21268505 21267797 ID=Msa0981730-mRNA-1:exon:6501;Parent=Msa0981730-mRNA-1
chr6_4 exon 21268791 21268980 21268791 ID=Msa0981730-mRNA-1:exon:6502;Parent=Msa0981730-mRNA-1
chr6_4 exon 21269609 21269742 21269609 ID=Msa0981730-mRNA-1:exon:6503;Parent=Msa0981730-mRNA-1
chr6_4 exon 21270121 21270233 21270121 ID=Msa0981730-mRNA-1:exon:6504;Parent=Msa0981730-mRNA-1
chr6_4 exon 21270336 21270480 21270336 ID=Msa0981730-mRNA-1:exon:6505;Parent=Msa0981730-mRNA-1
chr6_4 five_prime_UTR 21267797 21268115 21267797 ID=Msa0981730-mRNA-1:five_prime_utr;Parent=Msa0981730-mRNA-1
chr6_4 CDS 21268116 21268505 21268116 ID=Msa0981730-mRNA-1:cds;Parent=Msa0981730-mRNA-1
chr6_4 CDS 21268791 21268980 21268791 ID=Msa0981730-mRNA-1:cds;Parent=Msa0981730-mRNA-1
chr6_4 CDS 21269609 21269742 21269609 ID=Msa0981730-mRNA-1:cds;Parent=Msa0981730-mRNA-1
chr6_4 CDS 21270121 21270233 21270121 ID=Msa0981730-mRNA-1:cds;Parent=Msa0981730-mRNA-1
chr6_4 CDS 21270336 21270480 21270336 ID=Msa0981730-mRNA-1:cds;Parent=Msa0981730-mRNA-1
Gene Sequence

>Msa0981730

ATGGCAATTATCTTCTTCCATTACAAAGTTTTACTCTTTTCTTTGTTTTCTCTTCTGTTCTTTACCTTCTCTTCTTCCCATATCATACCAAGATTTCCTTATTCAGTGATTAGTCCAGAGCAACAACTAAACTCTGGTTCTGTCCAAAATGGTCTTTACAGAACAAAGTTTTTCACTCAAATACTTGATCACTTCAATTATAACCCTCAGAGTTATCAGAAATTTCAACAAAGGTATCTCATCAATGATACTTATTGGGGCGGTGCCAAAAAGAAAGCTCCAATCTTTGTCTATACTGGAAATGAGGGGAACATAGAGTGGTTTACACAAAACACAGGTTTTATGTTTGAGCAAGCACCTAATTTCAATGCCCTTTTGGTTTTTATTGAGCATAGATTCTATGGAAAATCAATTCCATTTGGAGGCAAGAAGAAGGTTGCATATGCAAATAGCAGTACACTTGGATATCTTAGTTCTGCGCAGGCTTTGGCTGACTATGCCACTCTTATCATTGACCTCAAGAAAAATTTGTCAGCAACTGAGTCTCCTGTTGTTGTGTTTGGAGGATCCTATGGAGGAATGCTGGCTGCTTGGTTCAGGATGAAGTATCCACATGTTGCAATTGGAGCTTTAGCATCATCAGCTCCAATCCTCCAATTTGATGATTTGGTTTCACCATATGCCTTCGACAACATCATCGCACAAGACTTCAGGAGTGAGAGTGAGAATTGTTACAAAGTGATAAAAGGGTCATGGAAGCTAATAGAAGAAACCGCCAAAAAACATGGAGGACTAGAATTACTAAGGAAATCATTCAGAATATGCAATAATTATATAGGAGTAGATGCTTTGGAAGGTTGGCTTGGCCAGGCTTGGATTTATACAGCCATGACAGATTATCCAACACCAACCAATTTCCTGAGTCCCTTACCAGCATATCCAGTGAGAAAGGTTCAAACCATACCCTCTTAA

Protein sequence

>Msa0981730

MAIIFFHYKVLLFSLFSLLFFTFSSSHIIPRFPYSVISPEQQLNSGSVQNGLYRTKFFTQILDHFNYNPQSYQKFQQRYLINDTYWGGAKKKAPIFVYTGNEGNIEWFTQNTGFMFEQAPNFNALLVFIEHRFYGKSIPFGGKKKVAYANSSTLGYLSSAQALADYATLIIDLKKNLSATESPVVVFGGSYGGMLAAWFRMKYPHVAIGALASSAPILQFDDLVSPYAFDNIIAQDFRSESENCYKVIKGSWKLIEETAKKHGGLELLRKSFRICNNYIGVDALEGWLGQAWIYTAMTDYPTPTNFLSPLPAYPVRKVQTIPS*